Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093720 | XP_003626362.1 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 2.19e-80 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093720 | sp|Q02610|SODC_PEA | 80.263 | 152 | 9 | 1 | 1 | 131 | 1 | 152 | 1.59e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093720 | B7FGV9 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 1.05e-80 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093720 | Msa0225370 | -0.811640 | 6.327209e-51 | -8.615850e-47 |
| Msa0093720 | Msa0636750 | -0.800466 | 1.422591e-48 | -8.615850e-47 |
| Msa0093720 | Msa1129010 | 0.914205 | 2.519997e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093720 | MtrunA17_Chr7g0273571 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 2.02e-84 | 243 |
| Msa0093720 | MtrunA17_Chr6g0461291 | 63.576 | 151 | 33 | 2 | 2 | 130 | 8 | 158 | 4.38e-57 | 174 |
| Msa0093720 | MtrunA17_Chr4g0028001 | 59.859 | 142 | 35 | 3 | 9 | 129 | 63 | 203 | 2.12e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093720 | AT1G08830.2 | 71.711 | 152 | 22 | 1 | 1 | 131 | 1 | 152 | 1.92e-69 | 206 |
| Msa0093720 | AT1G08830.1 | 71.711 | 152 | 22 | 1 | 1 | 131 | 1 | 152 | 1.92e-69 | 206 |
| Msa0093720 | AT5G18100.1 | 58.000 | 150 | 42 | 1 | 2 | 130 | 8 | 157 | 6.72e-55 | 169 |
| Msa0093720 | AT2G28190.1 | 58.784 | 148 | 40 | 1 | 3 | 129 | 66 | 213 | 4.18e-54 | 169 |
| Msa0093720 | AT5G18100.2 | 53.543 | 127 | 38 | 1 | 2 | 107 | 8 | 134 | 2.08e-40 | 132 |
Find 78 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 1_2:-76555711 | Msa0093720:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 1_2:-76556935 | Msa0093720:CDS |
| TCCTTCTCTTCTCTTCTCTC+TGG | 0.232034 | 1_2:-76558452 | Msa0093720:five_prime_UTR |
| GGCTTGCAAGGATGAACTTC+TGG | 0.248016 | 1_2:-76555690 | Msa0093720:exon |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 1_2:-76557315 | Msa0093720:CDS |
| CCTTCTCTTCTCTTCTCTCT+GGG | 0.296676 | 1_2:-76558451 | Msa0093720:five_prime_UTR |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 1_2:-76557357 | Msa0093720:CDS |
| CAGTTTGTGGTATGATCTTA+AGG | 0.306952 | 1_2:-76555467 | Msa0093720:three_prime_UTR |
| ATCCCATCTCTTGCTTGTTT+AGG | 0.310427 | 1_2:-76555607 | Msa0093720:three_prime_UTR |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 1_2:+76557350 | None:intergenic |
| GAATAGATGAGGTGGCAGTT+GGG | 0.368096 | 1_2:-76558605 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 1_2:+76556971 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 1_2:-76557538 | Msa0093720:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 1_2:-76557336 | Msa0093720:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 1_2:-76557316 | Msa0093720:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 1_2:+76556947 | None:intergenic |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 1_2:-76557285 | Msa0093720:intron |
| GTATTATAATCCTTTGTTAA+CGG | 0.459249 | 1_2:+76555403 | None:intergenic |
| TTCTCTTCTCTTCTCTCTGG+GGG | 0.461568 | 1_2:-76558449 | Msa0093720:five_prime_UTR |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 1_2:-76556986 | Msa0093720:CDS |
| GCTTGCAAGGATGAACTTCT+GGG | 0.462070 | 1_2:-76555689 | Msa0093720:exon |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 1_2:+76556368 | None:intergenic |
| TGAATAGATGAGGTGGCAGT+TGG | 0.465709 | 1_2:-76558606 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 1_2:-76556377 | Msa0093720:CDS |
| TTCTTGTGTCGAAATCTCAA+TGG | 0.471476 | 1_2:-76555553 | Msa0093720:three_prime_UTR |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 1_2:-76557487 | Msa0093720:intron |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 1_2:-76556376 | Msa0093720:CDS |
| AATAGATGAGGTGGCAGTTG+GGG | 0.478487 | 1_2:-76558604 | None:intergenic |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 1_2:-76556911 | Msa0093720:intron |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 1_2:-76557497 | Msa0093720:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 1_2:+76557287 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 1_2:-76557345 | Msa0093720:CDS |
| AACAAGCATGACAGTAACTT+CGG | 0.498758 | 1_2:+76555492 | None:intergenic |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 1_2:+76557363 | None:intergenic |
| TTATGGACGGCATTGATGAC+GGG | 0.506422 | 1_2:+76555371 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 1_2:-76556049 | Msa0093720:CDS |
| CCCAGAGAGAAGAGAAGAGA+AGG | 0.518902 | 1_2:+76558451 | None:intergenic |
| GCTCTCGCATATAAACAAAC+AGG | 0.523870 | 1_2:-76558535 | Msa0093720:five_prime_UTR |
| CTTCTCTTCTCTTCTCTCTG+GGG | 0.526123 | 1_2:-76558450 | Msa0093720:five_prime_UTR |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 1_2:+76557327 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 1_2:+76557319 | None:intergenic |
| GTTTGTTTATATGCGAGAGC+AGG | 0.531024 | 1_2:+76558538 | None:intergenic |
| AGACCTAAACAAGCAAGAGA+TGG | 0.533467 | 1_2:+76555604 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 1_2:-76556040 | Msa0093720:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 1_2:-76557369 | Msa0093720:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 1_2:-76555702 | Msa0093720:intron |
| ACTTCTGGGATACATGAAGT+TGG | 0.540567 | 1_2:-76555675 | Msa0093720:three_prime_UTR |
| GACCTAAACAAGCAAGAGAT+GGG | 0.545557 | 1_2:+76555605 | None:intergenic |
| CTAGAAGTGAGTGAGTAAGT+AGG | 0.545822 | 1_2:+76558480 | None:intergenic |
| GTTATGGACGGCATTGATGA+CGG | 0.547132 | 1_2:+76555370 | None:intergenic |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 1_2:-76557517 | Msa0093720:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 1_2:-76556981 | Msa0093720:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 1_2:-76557494 | Msa0093720:CDS |
| ACAAGCATGACAGTAACTTC+GGG | 0.558628 | 1_2:+76555493 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 1_2:-76556920 | Msa0093720:CDS |
| ATATCATCTTCCGTTAACAA+AGG | 0.584801 | 1_2:-76555413 | Msa0093720:three_prime_UTR |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 1_2:-76557548 | Msa0093720:exon |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 1_2:-76556944 | Msa0093720:CDS |
| CTTCAGATCACATTGAACAA+TGG | 0.604884 | 1_2:-76557560 | Msa0093720:intron |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 1_2:-76557554 | Msa0093720:exon |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 1_2:-76556371 | Msa0093720:intron |
| ATAGATGAGGTGGCAGTTGG+GGG | 0.613122 | 1_2:-76558603 | None:intergenic |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 1_2:-76557314 | Msa0093720:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 1_2:-76556974 | Msa0093720:CDS |
| AATGGCTATATGACTGCACT+TGG | 0.629665 | 1_2:-76555535 | Msa0093720:three_prime_UTR |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 1_2:+76557322 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 1_2:-76557493 | Msa0093720:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 1_2:+76556948 | None:intergenic |
| GGTGAATGTAAGAACAGTAG+AGG | 0.641475 | 1_2:-76558578 | Msa0093720:five_prime_UTR |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 1_2:+76556373 | None:intergenic |
| ATGTAAGAACAGTAGAGGCG+TGG | 0.643360 | 1_2:-76558573 | Msa0093720:five_prime_UTR |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 1_2:+76556983 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 1_2:-76557313 | Msa0093720:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 1_2:-76556963 | Msa0093720:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 1_2:-76556037 | Msa0093720:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 1_2:+76557359 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 1_2:+76556949 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 1_2:-76556022 | Msa0093720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAACAATTAAATTTT+TGG | + | chr1_2:76555763-76555782 | None:intergenic | 10.0% |
| !!! | AATTGAACAAAATTTTATTA+TGG | - | chr1_2:76556219-76556238 | Msa0093720:intron | 10.0% |
| !! | AAAAATGAAGAAATTAAACT+AGG | + | chr1_2:76555583-76555602 | None:intergenic | 15.0% |
| !! | AATCAAATTCCTTATATTAT+TGG | - | chr1_2:76556173-76556192 | Msa0093720:intron | 15.0% |
| !!! | TATGTTTTGTAAGATTTTTT+TGG | - | chr1_2:76556254-76556273 | Msa0093720:intron | 15.0% |
| !!! | AAATAACATTTGTTAGATAA+AGG | + | chr1_2:76556355-76556374 | None:intergenic | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | - | chr1_2:76556839-76556858 | Msa0093720:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | + | chr1_2:76556845-76556864 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | - | chr1_2:76557167-76557186 | Msa0093720:intron | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | - | chr1_2:76557277-76557296 | Msa0093720:intron | 15.0% |
| !!! | TTGTACAAATAAGTTGAAAA+CGG | + | chr1_2:76555915-76555934 | None:intergenic | 20.0% |
| !! | ATTTAACTGCAAGTAAAATA+TGG | + | chr1_2:76556153-76556172 | None:intergenic | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | - | chr1_2:76556732-76556751 | Msa0093720:intron | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | + | chr1_2:76556927-76556946 | None:intergenic | 20.0% |
| !! | CACAAAAAAATAAAATCAAG+TGG | + | chr1_2:76557123-76557142 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTTTTTGTGAC+CGG | - | chr1_2:76557125-76557144 | Msa0093720:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | - | chr1_2:76557276-76557295 | Msa0093720:intron | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr1_2:76557341-76557360 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr1_2:76557342-76557361 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | + | chr1_2:76557482-76557501 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | + | chr1_2:76557483-76557502 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | - | chr1_2:76557482-76557501 | Msa0093720:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | + | chr1_2:76558215-76558234 | None:intergenic | 20.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | + | chr1_2:76558216-76558235 | None:intergenic | 20.0% |
| !! | GTATTATAATCCTTTGTTAA+CGG | + | chr1_2:76558572-76558591 | None:intergenic | 20.0% |
| !! | ATTTTTCTTTAACGTGTTCT+CGG | - | chr1_2:76555597-76555616 | Msa0093720:three_prime_UTR | 25.0% |
| ! | TTATAAGCTATAAATCAAGC+TGG | - | chr1_2:76556047-76556066 | Msa0093720:CDS | 25.0% |
| ! | TATAAGCTATAAATCAAGCT+GGG | - | chr1_2:76556048-76556067 | Msa0093720:CDS | 25.0% |
| !! | TAACTTAACAGTGTTGAATT+TGG | - | chr1_2:76556104-76556123 | Msa0093720:intron | 25.0% |
| ! | TGCAAATTGCCAATAATATA+AGG | + | chr1_2:76556185-76556204 | None:intergenic | 25.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | + | chr1_2:76556719-76556738 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | - | chr1_2:76556965-76556984 | Msa0093720:CDS | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | - | chr1_2:76557097-76557116 | Msa0093720:intron | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | + | chr1_2:76557147-76557166 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | - | chr1_2:76557882-76557901 | Msa0093720:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | - | chr1_2:76558004-76558023 | Msa0093720:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | + | chr1_2:76558043-76558062 | None:intergenic | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | + | chr1_2:76558130-76558149 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | + | chr1_2:76558191-76558210 | None:intergenic | 25.0% |
| GTTTCTCGAATAATCAAATC+AGG | + | chr1_2:76555708-76555727 | None:intergenic | 30.0% | |
| TGTTGAATTGAATCTATACC+TGG | - | chr1_2:76555809-76555828 | Msa0093720:intron | 30.0% | |
| GTTGAATTGAATCTATACCT+GGG | - | chr1_2:76555810-76555829 | Msa0093720:intron | 30.0% | |
| GACAGTACATAAACTCAAAT+AGG | + | chr1_2:76555877-76555896 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr1_2:76555943-76555962 | None:intergenic | 30.0% |
| AGTTGATCACTAGATAGATT+TGG | + | chr1_2:76556085-76556104 | None:intergenic | 30.0% | |
| GCAGACTATTCAAAACAAAT+TGG | + | chr1_2:76556316-76556335 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | + | chr1_2:76556534-76556553 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | + | chr1_2:76556576-76556595 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | + | chr1_2:76556791-76556810 | None:intergenic | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | + | chr1_2:76556792-76556811 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | - | chr1_2:76556796-76556815 | Msa0093720:intron | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | + | chr1_2:76556992-76557011 | None:intergenic | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | - | chr1_2:76556991-76557010 | Msa0093720:intron | 30.0% | |
| AAAAATAAAATCAAGTGGCC+TGG | + | chr1_2:76557118-76557137 | None:intergenic | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | - | chr1_2:76557177-76557196 | Msa0093720:intron | 30.0% |
| GATTAAAAGTTGAAACTCTC+AGG | + | chr1_2:76557508-76557527 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | - | chr1_2:76557654-76557673 | Msa0093720:intron | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | - | chr1_2:76557655-76557674 | Msa0093720:intron | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | + | chr1_2:76557663-76557682 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | + | chr1_2:76557664-76557683 | None:intergenic | 30.0% | |
| !! | TTGGAAACACTTTTTGTGTT+TGG | - | chr1_2:76557694-76557713 | Msa0093720:intron | 30.0% |
| ATTTGTGACGATCACTTTAT+AGG | + | chr1_2:76557748-76557767 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | - | chr1_2:76558057-76558076 | Msa0093720:intron | 30.0% | |
| AATAATACCTACAACAAACG+GGG | + | chr1_2:76558262-76558281 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | + | chr1_2:76558263-76558282 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | + | chr1_2:76558264-76558283 | None:intergenic | 30.0% | |
| ATATCATCTTCCGTTAACAA+AGG | - | chr1_2:76558559-76558578 | Msa0093720:five_prime_UTR | 30.0% | |
| TTGAATCTATACCTGGGATT+TGG | - | chr1_2:76555816-76555835 | Msa0093720:intron | 35.0% | |
| CAAACAGATACTAACTGACT+CGG | + | chr1_2:76555848-76555867 | None:intergenic | 35.0% | |
| ATCTGAAGAACAAAACAGCT+AGG | + | chr1_2:76556400-76556419 | None:intergenic | 35.0% | |
| CTTCAGATCACATTGAACAA+TGG | - | chr1_2:76556412-76556431 | Msa0093720:intron | 35.0% | |
| ATCACATTGAACAATGGTGA+AGG | - | chr1_2:76556418-76556437 | Msa0093720:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | + | chr1_2:76556625-76556644 | None:intergenic | 35.0% | |
| AACACAATTCATTCTCGACT+TGG | + | chr1_2:76556882-76556901 | None:intergenic | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | - | chr1_2:76557052-76557071 | Msa0093720:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | + | chr1_2:76557231-76557250 | None:intergenic | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | - | chr1_2:76557326-76557345 | Msa0093720:CDS | 35.0% | |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr1_2:76557440-76557459 | Msa0093720:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr1_2:76557441-76557460 | Msa0093720:intron | 35.0% |
| ACCAAACTCAATCATAGGAA+GGG | - | chr1_2:76557561-76557580 | Msa0093720:intron | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | - | chr1_2:76557675-76557694 | Msa0093720:intron | 35.0% |
| AAGTGATCGTCACAAATTCA+AGG | - | chr1_2:76557751-76557770 | Msa0093720:intron | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | - | chr1_2:76557752-76557771 | Msa0093720:intron | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | + | chr1_2:76557807-76557826 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | - | chr1_2:76558017-76558036 | Msa0093720:intron | 35.0% | |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | - | chr1_2:76558261-76558280 | Msa0093720:intron | 35.0% |
| TTCTTGTGTCGAAATCTCAA+TGG | - | chr1_2:76558419-76558438 | Msa0093720:intron | 35.0% | |
| AACAAGCATGACAGTAACTT+CGG | + | chr1_2:76558483-76558502 | None:intergenic | 35.0% | |
| !! | TCATGCTTGTTTTCAGTTTG+TGG | - | chr1_2:76558492-76558511 | Msa0093720:five_prime_UTR | 35.0% |
| CAGTTTGTGGTATGATCTTA+AGG | - | chr1_2:76558505-76558524 | Msa0093720:five_prime_UTR | 35.0% | |
| GGTGAATGTAAGAACAGTAG+AGG | - | chr1_2:76555394-76555413 | Msa0093720:three_prime_UTR | 40.0% | |
| GTTTGTTTATATGCGAGAGC+AGG | + | chr1_2:76555437-76555456 | None:intergenic | 40.0% | |
| GCTCTCGCATATAAACAAAC+AGG | - | chr1_2:76555437-76555456 | Msa0093720:three_prime_UTR | 40.0% | |
| CTAGAAGTGAGTGAGTAAGT+AGG | + | chr1_2:76555495-76555514 | None:intergenic | 40.0% | |
| GAGAAACCTAAGCTATCTTG+TGG | - | chr1_2:76555721-76555740 | Msa0093720:intron | 40.0% | |
| ACAGATCCACAAGATAGCTT+AGG | + | chr1_2:76555730-76555749 | None:intergenic | 40.0% | |
| CGAGTCAGTTAGTATCTGTT+TGG | - | chr1_2:76555846-76555865 | Msa0093720:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | - | chr1_2:76556455-76556474 | Msa0093720:intron | 40.0% | |
| ! | TGGTACTATTAGCTTCTCTC+AGG | - | chr1_2:76556475-76556494 | Msa0093720:intron | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | - | chr1_2:76556478-76556497 | Msa0093720:intron | 40.0% |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | - | chr1_2:76556479-76556498 | Msa0093720:intron | 40.0% |
| TGGTAAGTTTCAACAGCCTT+TGG | - | chr1_2:76556505-76556524 | Msa0093720:intron | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | - | chr1_2:76556585-76556604 | Msa0093720:intron | 40.0% | |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | - | chr1_2:76556627-76556646 | Msa0093720:intron | 40.0% |
| AGTTGACATGCAACCATTTG+TGG | + | chr1_2:76556688-76556707 | None:intergenic | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | - | chr1_2:76556687-76556706 | Msa0093720:intron | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | - | chr1_2:76556699-76556718 | Msa0093720:intron | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | - | chr1_2:76556986-76557005 | Msa0093720:CDS | 40.0% | |
| AATCCTAATGGTAAGGAGCA+CGG | - | chr1_2:76556998-76557017 | Msa0093720:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | - | chr1_2:76557037-76557056 | Msa0093720:intron | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | - | chr1_2:76557223-76557242 | Msa0093720:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+TGG | - | chr1_2:76557300-76557319 | Msa0093720:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTTT+GGG | - | chr1_2:76557301-76557320 | Msa0093720:CDS | 40.0% |
| TTGCTTAACATGTGCCCAAA+GGG | + | chr1_2:76557318-76557337 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr1_2:76557458-76557477 | None:intergenic | 40.0% |
| ACTGGACCAAACTCAATCAT+AGG | - | chr1_2:76557556-76557575 | Msa0093720:exon | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | - | chr1_2:76557560-76557579 | Msa0093720:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | + | chr1_2:76557602-76557621 | None:intergenic | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | - | chr1_2:76558038-76558057 | Msa0093720:intron | 40.0% | |
| ! | GTGAGAAGTTCTGACAATCA+TGG | - | chr1_2:76558100-76558119 | Msa0093720:intron | 40.0% |
| TTGTCCTGTTACTGTCTCAT+AGG | - | chr1_2:76558151-76558170 | Msa0093720:intron | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | + | chr1_2:76558158-76558177 | None:intergenic | 40.0% | |
| !! | GTAGGTATTATTGGCTTGCA+AGG | - | chr1_2:76558270-76558289 | Msa0093720:intron | 40.0% |
| !! | ACTTCTGGGATACATGAAGT+TGG | - | chr1_2:76558297-76558316 | Msa0093720:intron | 40.0% |
| ATCCCATCTCTTGCTTGTTT+AGG | - | chr1_2:76558365-76558384 | Msa0093720:intron | 40.0% | |
| GACCTAAACAAGCAAGAGAT+GGG | + | chr1_2:76558370-76558389 | None:intergenic | 40.0% | |
| AGACCTAAACAAGCAAGAGA+TGG | + | chr1_2:76558371-76558390 | None:intergenic | 40.0% | |
| AATGGCTATATGACTGCACT+TGG | - | chr1_2:76558437-76558456 | Msa0093720:intron | 40.0% | |
| ACAAGCATGACAGTAACTTC+GGG | + | chr1_2:76558482-76558501 | None:intergenic | 40.0% | |
| ATGTAAGAACAGTAGAGGCG+TGG | - | chr1_2:76555399-76555418 | Msa0093720:three_prime_UTR | 45.0% | |
| TCCTTCTCTTCTCTTCTCTC+TGG | - | chr1_2:76555520-76555539 | Msa0093720:three_prime_UTR | 45.0% | |
| CCTTCTCTTCTCTTCTCTCT+GGG | - | chr1_2:76555521-76555540 | Msa0093720:three_prime_UTR | 45.0% | |
| CTTCTCTTCTCTTCTCTCTG+GGG | - | chr1_2:76555522-76555541 | Msa0093720:three_prime_UTR | 45.0% | |
| TTCTCTTCTCTTCTCTCTGG+GGG | - | chr1_2:76555523-76555542 | Msa0093720:three_prime_UTR | 45.0% | |
| GATTGATGCATGCATACCTC+AGG | + | chr1_2:76555552-76555571 | None:intergenic | 45.0% | |
| TTGAACAATGGTGAAGGCTG+TGG | - | chr1_2:76556424-76556443 | Msa0093720:intron | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | + | chr1_2:76556616-76556635 | None:intergenic | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | - | chr1_2:76556615-76556634 | Msa0093720:intron | 45.0% | |
| GGCACTATTGAGTATGAGTC+AGG | - | chr1_2:76556753-76556772 | Msa0093720:intron | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | + | chr1_2:76557026-76557045 | None:intergenic | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | + | chr1_2:76557027-76557046 | None:intergenic | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | - | chr1_2:76557191-76557210 | Msa0093720:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | + | chr1_2:76557196-76557215 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | + | chr1_2:76557219-76557238 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCAA+AGG | + | chr1_2:76557319-76557338 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | + | chr1_2:76557552-76557571 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | + | chr1_2:76557553-76557572 | None:intergenic | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | + | chr1_2:76557565-76557584 | None:intergenic | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | - | chr1_2:76557596-76557615 | Msa0093720:intron | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | - | chr1_2:76557601-76557620 | Msa0093720:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | + | chr1_2:76557607-76557626 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | - | chr1_2:76557896-76557915 | Msa0093720:intron | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | - | chr1_2:76557923-76557942 | Msa0093720:intron | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | - | chr1_2:76557932-76557951 | Msa0093720:intron | 45.0% | |
| AAGACTACTGGAAATGCTGG+TGG | - | chr1_2:76557935-76557954 | Msa0093720:intron | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | - | chr1_2:76558252-76558271 | Msa0093720:intron | 45.0% |
| GCTTGCAAGGATGAACTTCT+GGG | - | chr1_2:76558283-76558302 | Msa0093720:intron | 45.0% | |
| CCCAGAGAGAAGAGAAGAGA+AGG | + | chr1_2:76555524-76555543 | None:intergenic | 50.0% | |
| CTCGGATTCTTCCAAATCCC+AGG | + | chr1_2:76555830-76555849 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | - | chr1_2:76556485-76556504 | Msa0093720:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | + | chr1_2:76556524-76556543 | None:intergenic | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | + | chr1_2:76556612-76556631 | None:intergenic | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | + | chr1_2:76556653-76556672 | None:intergenic | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | + | chr1_2:76556656-76556675 | None:intergenic | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | - | chr1_2:76556656-76556675 | Msa0093720:intron | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | - | chr1_2:76556657-76556676 | Msa0093720:intron | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | - | chr1_2:76556658-76556677 | Msa0093720:intron | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | - | chr1_2:76556659-76556678 | Msa0093720:intron | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | + | chr1_2:76557028-76557047 | None:intergenic | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | - | chr1_2:76557028-76557047 | Msa0093720:intron | 50.0% | |
| AATGTCACTGTCGGCGATGA+TGG | - | chr1_2:76557061-76557080 | Msa0093720:intron | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | - | chr1_2:76557538-76557557 | Msa0093720:CDS | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | - | chr1_2:76557595-76557614 | Msa0093720:intron | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | - | chr1_2:76557899-76557918 | Msa0093720:intron | 50.0% | |
| GGCTTGCAAGGATGAACTTC+TGG | - | chr1_2:76558282-76558301 | Msa0093720:intron | 50.0% | |
| ! | TTCTCTCTGGGGGTTTCCTG+AGG | - | chr1_2:76555533-76555552 | Msa0093720:three_prime_UTR | 55.0% |
| GTGAAGGCTGTGGCAGTTCT+TGG | - | chr1_2:76556434-76556453 | Msa0093720:intron | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | + | chr1_2:76556648-76556667 | None:intergenic | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | + | chr1_2:76556665-76556684 | None:intergenic | 55.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | + | chr1_2:76556676-76556695 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | + | chr1_2:76557004-76557023 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | - | chr1_2:76557066-76557085 | Msa0093720:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | - | chr1_2:76556603-76556622 | Msa0093720:intron | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | - | chr1_2:76556636-76556655 | Msa0093720:intron | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | + | chr1_2:76556671-76556690 | None:intergenic | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | - | chr1_2:76556672-76556691 | Msa0093720:intron | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | - | chr1_2:76557950-76557969 | Msa0093720:intron | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | - | chr1_2:76557009-76557028 | Msa0093720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 76555378 | 76558616 | 76555378 | ID=Msa0093720;Name=Msa0093720 |
| chr1_2 | mRNA | 76555378 | 76558616 | 76555378 | ID=Msa0093720-mRNA-1;Parent=Msa0093720;Name=Msa0093720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=190|0.83|0.85|1|0.83|0.71|7|320|131 |
| chr1_2 | exon | 76555378 | 76555720 | 76555378 | ID=Msa0093720-mRNA-1:exon:27059;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76556023 | 76556076 | 76556023 | ID=Msa0093720-mRNA-1:exon:27058;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76556372 | 76556416 | 76556372 | ID=Msa0093720-mRNA-1:exon:27057;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76556912 | 76557007 | 76556912 | ID=Msa0093720-mRNA-1:exon:27056;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76557286 | 76557387 | 76557286 | ID=Msa0093720-mRNA-1:exon:27055;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76557488 | 76557576 | 76557488 | ID=Msa0093720-mRNA-1:exon:27054;Parent=Msa0093720-mRNA-1 |
| chr1_2 | exon | 76558440 | 76558616 | 76558440 | ID=Msa0093720-mRNA-1:exon:27053;Parent=Msa0093720-mRNA-1 |
| chr1_2 | five_prime_UTR | 76558440 | 76558616 | 76558440 | ID=Msa0093720-mRNA-1:five_prime_utr;Parent=Msa0093720-mRNA-1 |
| chr1_2 | five_prime_UTR | 76557564 | 76557576 | 76557564 | ID=Msa0093720-mRNA-1:five_prime_utr;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76557488 | 76557563 | 76557488 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76557286 | 76557387 | 76557286 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76556912 | 76557007 | 76556912 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76556372 | 76556416 | 76556372 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76556023 | 76556076 | 76556023 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | CDS | 76555698 | 76555720 | 76555698 | ID=Msa0093720-mRNA-1:cds;Parent=Msa0093720-mRNA-1 |
| chr1_2 | three_prime_UTR | 76555378 | 76555697 | 76555378 | ID=Msa0093720-mRNA-1:three_prime_utr;Parent=Msa0093720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
