AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225370 MtrunA17_Chr2g0331721 91.558 462 2 2 1 426 1 461 0.0 842
Msa0225370 MtrunA17_Chr6g0458931 69.584 457 95 4 12 426 1 455 0.0 654
Msa0225370 MtrunA17_Chr7g0230011 74.242 462 64 3 1 426 1 443 0.0 652
Msa0225370 MtrunA17_Chr6g0459021 70.139 432 92 2 31 426 17 447 0.0 593
Msa0225370 MtrunA17_Chr6g0459001 64.706 476 90 3 28 426 2 476 0.0 580
Msa0225370 MtrunA17_Chr8g0376991 62.356 433 126 2 30 426 5 436 0.0 574
Msa0225370 MtrunA17_Chr6g0458921 68.998 429 93 4 35 426 3 428 0.0 565
Msa0225370 MtrunA17_Chr6g0459031 67.290 428 102 3 36 426 2 428 0.0 557
Msa0225370 MtrunA17_Chr3g0122921 61.187 438 115 3 25 426 10 428 0.0 551
Msa0225370 MtrunA17_Chr4g0057851 63.438 413 114 2 48 424 10 421 0.0 548
Msa0225370 MtrunA17_Chr2g0328081 68.224 428 98 3 36 426 2 428 0.0 535
Msa0225370 MtrunA17_Chr6g0459011 71.066 394 77 2 64 421 1 393 0.0 528
Msa0225370 MtrunA17_Chr5g0422741 56.659 443 151 3 20 426 2 439 2.28e-172 489
Msa0225370 MtrunA17_Chr1g0198531 56.351 433 148 3 30 426 10 437 3.37e-169 481
Msa0225370 MtrunA17_Chr1g0198541 54.965 433 154 3 30 426 10 437 1.15e-164 470
Msa0225370 MtrunA17_Chr3g0077651 49.425 435 181 2 31 426 35 469 8.95e-146 423
Msa0225370 MtrunA17_Chr3g0143701 35.065 462 242 9 4 412 39 495 7.56e-85 268
Msa0225370 MtrunA17_Chr2g0281341 36.038 419 221 5 40 412 87 504 9.62e-85 268
Msa0225370 MtrunA17_Chr5g0406331 36.496 411 213 5 40 403 78 487 6.51e-83 263
Msa0225370 MtrunA17_Chr5g0406351 34.312 443 242 6 32 426 91 532 2.06e-81 260
Msa0225370 MtrunA17_Chr4g0038711 32.809 445 247 4 23 415 45 489 2.87e-80 256
Msa0225370 MtrunA17_Chr3g0140761 27.984 486 264 11 12 422 1 475 1.29e-51 180
Msa0225370 MtrunA17_Chr1g0198081 27.426 474 283 11 1 426 19 479 1.26e-48 172
Msa0225370 MtrunA17_Chr1g0146491 28.416 461 250 11 35 422 12 465 9.04e-48 170
Msa0225370 MtrunA17_Chr8g0387941 26.549 452 276 9 24 425 2 447 3.67e-46 165
Msa0225370 MtrunA17_Chr3g0125101 28.145 469 255 13 26 422 15 473 2.54e-44 160
Msa0225370 MtrunA17_Chr4g0027241 25.862 464 285 10 11 425 6 459 3.06e-44 160
Msa0225370 MtrunA17_Chr3g0125091 27.292 469 259 12 26 422 15 473 7.75e-44 159
Msa0225370 MtrunA17_Chr3g0103271 27.463 477 255 13 23 421 2 465 7.96e-44 159
Msa0225370 MtrunA17_Chr3g0125081 27.292 469 258 13 26 422 15 472 2.09e-43 158
Msa0225370 MtrunA17_Chr1g0206871 26.477 457 245 10 49 422 16 464 3.80e-42 154
Msa0225370 MtrunA17_Chr4g0037201 25.562 489 273 10 10 422 32 505 5.00e-42 155
Msa0225370 MtrunA17_Chr1g0146391 25.966 466 258 12 35 426 2 454 1.74e-39 147
Msa0225370 MtrunA17_Chr3g0130641 28.446 457 239 11 40 422 28 470 3.00e-39 147
Msa0225370 MtrunA17_Chr1g0159761 27.679 448 236 13 25 397 5 439 7.17e-38 143
Msa0225370 MtrunA17_Chr5g0447221 26.637 443 239 11 49 416 30 461 1.11e-37 142
Msa0225370 MtrunA17_Chr3g0130651 27.014 422 227 10 40 392 22 431 2.16e-37 141
Msa0225370 MtrunA17_Chr1g0184721 25.806 434 248 11 48 425 22 437 3.42e-37 140
Msa0225370 MtrunA17_Chr8g0384661 26.292 445 249 10 49 422 51 487 3.54e-37 141
Msa0225370 MtrunA17_Chr3g0103231 25.342 438 255 9 47 416 22 455 1.05e-35 137
Msa0225370 MtrunA17_Chr1g0146411 27.273 418 228 13 40 391 28 435 1.16e-35 137
Msa0225370 MtrunA17_Chr5g0447231 25.959 443 243 13 49 416 26 458 5.98e-34 132
Msa0225370 MtrunA17_Chr3g0140541 25.113 442 245 11 47 413 24 454 1.14e-33 131
Msa0225370 MtrunA17_Chr3g0103211 25.217 460 269 10 25 416 3 455 1.14e-32 128
Msa0225370 MtrunA17_Chr2g0293331 24.201 438 242 10 49 407 13 439 2.54e-32 127
Msa0225370 MtrunA17_Chr3g0140531 24.313 473 276 13 26 425 4 467 3.19e-32 127
Msa0225370 MtrunA17_Chr1g0146331 23.400 453 253 11 35 407 10 448 5.93e-32 126
Msa0225370 MtrunA17_Chr4g0058161 24.935 385 249 9 76 425 68 447 1.01e-30 122
Msa0225370 MtrunA17_Chr3g0103221 23.131 428 259 9 56 416 38 462 2.25e-28 116
Msa0225370 MtrunA17_Chr1g0206851 25.429 350 181 9 143 422 35 374 1.75e-27 112
Msa0225370 MtrunA17_Chr1g0206831 26.452 310 153 7 177 421 37 336 9.27e-27 109
Msa0225370 MtrunA17_Chr5g0436281 25.581 387 238 9 76 422 1 377 3.94e-24 103
Msa0225370 MtrunA17_Chr1g0206821 28.899 218 126 6 228 422 313 524 1.22e-23 103
Msa0225370 MtrunA17_Chr1g0206821 28.346 254 117 7 35 231 11 256 5.78e-16 79.7
Msa0225370 MtrunA17_Chr3g0103251 29.075 227 140 4 209 416 144 368 1.13e-22 99.0
Msa0225370 MtrunA17_Chr3g0130661 28.736 174 108 2 265 422 1 174 1.45e-16 77.4
Msa0225370 MtrunA17_Chr3g0112971 24.036 441 279 14 31 425 3 433 1.08e-15 78.6
Msa0225370 MtrunA17_Chr5g0402151 27.372 274 137 7 59 293 11 261 1.02e-13 71.2
Msa0225370 MtrunA17_Chr7g0217401 24.422 389 234 15 32 381 25 392 1.28e-13 72.4
Msa0225370 MtrunA17_Chr4g0027261 26.702 191 124 4 244 425 1 184 2.36e-13 68.6
Msa0225370 MtrunA17_Chr7g0239011 20.339 413 276 12 19 395 32 427 8.49e-13 69.7
Msa0225370 MtrunA17_Chr7g0217381 24.416 385 231 14 38 380 24 390 1.59e-12 68.9
Msa0225370 MtrunA17_Chr3g0090101 23.901 364 225 12 58 385 2 349 5.48e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225370 AT5G40780.1 71.461 445 84 3 24 426 3 446 0.0 659
Msa0225370 AT1G48640.1 67.574 441 103 3 25 426 14 453 0.0 610
Msa0225370 AT1G24400.1 71.096 429 87 2 34 426 14 441 0.0 601
Msa0225370 AT5G40780.3 72.180 399 74 2 64 426 1 398 0.0 597
Msa0225370 AT5G40780.2 72.180 399 74 2 64 426 1 398 0.0 597
Msa0225370 AT1G67640.1 69.318 440 97 3 23 426 4 441 0.0 582
Msa0225370 AT3G01760.1 60.648 432 129 3 30 420 10 441 0.0 540
Msa0225370 AT1G61270.1 61.305 429 129 2 21 412 6 434 0.0 539
Msa0225370 AT1G25530.1 56.221 434 148 3 28 425 12 439 3.93e-167 476
Msa0225370 AT1G71680.1 52.561 449 170 3 20 426 1 448 8.05e-154 443
Msa0225370 AT1G71680.2 52.473 364 130 3 20 341 1 363 9.34e-128 374
Msa0225370 AT1G47670.1 35.417 432 232 5 40 425 85 515 9.48e-83 263
Msa0225370 AT4G35180.1 29.596 446 263 7 5 406 19 457 1.95e-62 209
Msa0225370 AT1G10010.2 30.538 465 246 9 29 422 11 469 6.45e-54 187
Msa0225370 AT1G10010.1 30.538 465 246 9 29 422 10 468 6.86e-54 186
Msa0225370 AT4G35180.2 31.148 305 170 2 5 274 19 318 7.89e-50 172
Msa0225370 AT1G08230.2 26.711 453 274 10 24 425 3 448 3.36e-46 166
Msa0225370 AT1G58360.1 28.131 487 259 10 8 422 10 477 6.76e-46 165
Msa0225370 AT5G41800.1 26.056 426 260 7 50 426 28 447 1.40e-42 155
Msa0225370 AT5G49630.1 28.510 463 250 12 16 402 2 459 7.47e-42 154
Msa0225370 AT1G77380.1 28.670 436 231 12 32 397 15 440 7.54e-42 154
Msa0225370 AT5G09220.1 26.562 448 248 11 49 422 46 486 1.48e-40 151
Msa0225370 AT1G44100.1 25.364 481 266 13 23 422 5 473 7.52e-37 140
Msa0225370 AT5G63850.1 25.676 444 257 8 49 422 19 459 8.08e-37 140
Msa0225370 AT5G23810.1 26.651 424 220 11 47 390 24 436 2.94e-33 130
Msa0225370 AT1G08230.3 26.479 355 205 9 120 425 1 348 2.84e-29 117
Msa0225370 AT1G08230.4 26.888 331 186 9 144 425 6 329 1.13e-27 112
Msa0225370 AT1G08230.6 26.888 331 186 9 144 425 6 329 1.13e-27 112
Msa0225370 AT1G08230.5 26.888 331 186 9 144 425 6 329 1.13e-27 112
Msa0225370 AT3G55740.1 24.406 463 279 13 1 422 1 433 2.68e-24 104
Msa0225370 AT2G39890.2 23.474 426 275 11 39 422 20 436 1.18e-23 102
Msa0225370 AT2G39890.1 23.474 426 275 11 39 422 20 436 1.18e-23 102
Msa0225370 AT2G39890.3 23.316 386 248 9 76 422 1 377 3.53e-22 97.8
Msa0225370 AT2G36590.1 25.245 408 246 15 37 398 12 406 1.75e-21 96.7
Msa0225370 AT3G55740.2 24.289 387 243 9 76 422 1 377 3.16e-21 95.1
Msa0225370 AT3G55740.3 24.289 387 243 9 76 422 1 377 3.16e-21 95.1
Msa0225370 AT5G23810.2 25.767 326 170 9 47 311 24 338 4.84e-20 91.3
Msa0225370 AT5G15240.1 25.000 392 241 13 25 380 9 383 3.99e-18 86.3
Msa0225370 AT2G39130.2 24.017 458 285 17 6 416 104 545 3.94e-15 77.8
Msa0225370 AT2G39130.1 24.017 458 285 17 6 416 104 545 3.94e-15 77.8

Find 130 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCCAGTTGCTCTTAT+TGG 0.219378 2_1:+75492866 Msa0225370:CDS
TTCAATTTCTTCAGTGCTTT+AGG 0.228996 2_1:+75492707 Msa0225370:intron
GGAATAACCTTCCCATTCTT+TGG 0.269371 2_1:+75493463 Msa0225370:CDS
CCATTCTTTGGTGCCCTCCT+TGG 0.281653 2_1:+75493475 Msa0225370:CDS
TTTGTTGTCATTCATGTTAT+AGG 0.284943 2_1:+75492974 Msa0225370:CDS
ATTTCCCAGTTGCTCTTATT+GGG 0.285634 2_1:+75492867 Msa0225370:CDS
TTTCTATACTTGACGATTCA+TGG 0.294299 2_1:+75493897 Msa0225370:exon
GCTTGTCTTGGTTCACAAAC+TGG 0.295561 2_1:+75493687 Msa0225370:CDS
CAAGACAAGCTAAACCTCTT+AGG 0.301943 2_1:-75493674 None:intergenic
CCCAACTTCAACTCCATTGC+TGG 0.312413 2_1:+75491303 Msa0225370:CDS
CTTATTGGGTATTGGATGTT+TGG 0.317962 2_1:+75492881 Msa0225370:CDS
CAGTTGCTCTTATTGGGTAT+TGG 0.329751 2_1:+75492873 Msa0225370:CDS
TGCATTCCTTGAAGAAGTTA+TGG 0.330789 2_1:-75489412 None:intergenic
CTTCTTCAAGGAATGCAAAA+TGG 0.331015 2_1:+75489418 Msa0225370:CDS
TAATCACCCTCTACACTCTA+TGG 0.375402 2_1:+75491007 Msa0225370:CDS
CAATACCCAATAAGAGCAAC+TGG 0.375667 2_1:-75492872 None:intergenic
CATTGCGAACAACAAATCTT+AGG 0.383519 2_1:-75493177 None:intergenic
AACAAAAGAAAATTGATGAT+TGG 0.385860 2_1:+75489385 Msa0225370:CDS
TGCTTCTTCAGAGGCTGAAA+AGG 0.398966 2_1:+75489167 Msa0225370:CDS
GAGATGCATGAAATGGTTCC+AGG 0.408422 2_1:+75491039 Msa0225370:CDS
TGTAGCTTCCTTGCATTATG+TGG 0.411632 2_1:+75493636 Msa0225370:intron
TTGGAGAAAAGCTTGGACTC+TGG 0.412306 2_1:+75491103 Msa0225370:CDS
TCAGCCTCTGAAGAAGCAAT+TGG 0.414783 2_1:-75489162 None:intergenic
GGCTTCCCATAACTTCTTCA+AGG 0.414953 2_1:+75489406 Msa0225370:CDS
TCATGTTATAGGAAGCTATC+AGG 0.416323 2_1:+75492985 Msa0225370:CDS
TCCTCTCCACATTGGACCCT+TGG 0.420922 2_1:-75492810 None:intergenic
ATTAGCCTCAATCCACCTAT+TGG 0.422145 2_1:-75493850 None:intergenic
CTCCACATTGGACCCTTGGA+TGG 0.422755 2_1:-75492806 None:intergenic
GCATTCCTTGAAGAAGTTAT+GGG 0.423856 2_1:-75489411 None:intergenic
TCATGGATGCATGTGTATAA+TGG 0.429106 2_1:+75493914 Msa0225370:three_prime_UTR
TTCAAATTGTTTGCAATGGA+GGG 0.431140 2_1:+75494041 Msa0225370:three_prime_UTR
CCATCTGCCATGGCAAGTCT+TGG 0.434758 2_1:+75489498 Msa0225370:CDS
CCAAGGAGGGCACCAAAGAA+TGG 0.436204 2_1:-75493475 None:intergenic
CTAAGAGGTTTAGCTTGTCT+TGG 0.437451 2_1:+75493675 Msa0225370:CDS
GGACCCTTGGATGGTTTCTC+CGG 0.438031 2_1:-75492797 None:intergenic
CTTATGATTCTGTCACCAAT+AGG 0.442214 2_1:+75493835 Msa0225370:CDS
CTTCTCTTAATAAACCTACT+TGG 0.442717 2_1:+75492930 Msa0225370:CDS
GACATTGTTTACATGGTCAC+CGG 0.442865 2_1:+75491165 Msa0225370:CDS
CTCCATTGCTGGTATCTCCT+TGG 0.443891 2_1:+75491314 Msa0225370:CDS
TTTCAGATTTGCATTATACT+TGG 0.449641 2_1:+75493805 Msa0225370:intron
GATGGTTTCTCCGGTGTGGA+CGG 0.451778 2_1:-75492788 None:intergenic
TTCAGCATTCACAATGTTTG+TGG 0.454604 2_1:+75493441 Msa0225370:intron
ATGGTTTCTCCGGTGTGGAC+GGG 0.455777 2_1:-75492787 None:intergenic
GGTGCTTTGATTGGAACAAA+TGG 0.456812 2_1:+75494000 Msa0225370:three_prime_UTR
ACCAGCAATGGAGTTGAAGT+TGG 0.460631 2_1:-75491304 None:intergenic
CTCCAACACCACATTGTGTC+CGG 0.463600 2_1:-75492750 None:intergenic
GATTGGAACAAATGGAGATA+AGG 0.464708 2_1:+75494008 Msa0225370:three_prime_UTR
CTGCAGCAATCATGTCTTTG+AGG 0.471568 2_1:+75491337 Msa0225370:CDS
ATGAAATGGTTCCAGGAAAA+CGG 0.476078 2_1:+75491046 Msa0225370:CDS
TGGAGTTGAAGTTGGGAAGA+TGG 0.477812 2_1:-75491296 None:intergenic
ATGTCGAATTGCAGGGGTCC+TGG 0.479412 2_1:+75490958 Msa0225370:intron
AGTATAGAAACCGTAGGACT+TGG 0.487333 2_1:-75493884 None:intergenic
CTTGTCTTGGTTCACAAACT+GGG 0.488155 2_1:+75493688 Msa0225370:CDS
GGAGTTGAAGTTGGGAAGAT+GGG 0.488377 2_1:-75491295 None:intergenic
TCAGCATTCACAATGTTTGT+GGG 0.488938 2_1:+75493442 Msa0225370:intron
GGACTTACAAAATATGTTGT+GGG 0.491845 2_1:-75493523 None:intergenic
ATTCAAATTGTTTGCAATGG+AGG 0.493032 2_1:+75494040 Msa0225370:three_prime_UTR
CCAAGACTTGCCATGGCAGA+TGG 0.495959 2_1:-75489498 None:intergenic
CAAGGAGGGCACCAAAGAAT+GGG 0.496713 2_1:-75493474 None:intergenic
CCTCTACACTCTATGGCAAA+TGG 0.497407 2_1:+75491014 Msa0225370:CDS
TTGCTATTTACAAACCTAAG+AGG 0.497836 2_1:+75493660 Msa0225370:CDS
AACAACAAATCTTAGGAGTC+GGG 0.497913 2_1:-75493170 None:intergenic
TATATTCAAATTGTTTGCAA+TGG 0.499086 2_1:+75494037 Msa0225370:three_prime_UTR
TTTGACAGATACCATGAGTT+GGG 0.500029 2_1:+75491069 Msa0225370:CDS
TGACATGATTGAGACCGTAA+TGG 0.504825 2_1:+75493123 Msa0225370:CDS
GAGTTGGGACAAGAAGCATT+TGG 0.508176 2_1:+75491084 Msa0225370:CDS
GAAGCATTTGGAGAAAAGCT+TGG 0.510904 2_1:+75491096 Msa0225370:CDS
TGTTGGAGACTCAGTTCCCA+TGG 0.511962 2_1:-75489130 None:intergenic
TGGACTTACAAAATATGTTG+TGG 0.515751 2_1:-75493524 None:intergenic
CACAACGTTACTGCCATGGT+TGG 0.517108 2_1:+75489456 Msa0225370:CDS
CCAGCAATGGAGTTGAAGTT+GGG 0.520549 2_1:-75491303 None:intergenic
ATGCAAGATATGACAAAGGC+AGG 0.523499 2_1:-75493951 None:intergenic
GTTGTTCGCAATGTTTATGT+TGG 0.530022 2_1:+75493187 Msa0225370:CDS
GCTGCAACTATAAGCCAAGT+AGG 0.535757 2_1:-75492944 None:intergenic
ACATTGTTTACATGGTCACC+GGG 0.538739 2_1:+75491166 Msa0225370:CDS
TCAAATTGTTTGCAATGGAG+GGG 0.540207 2_1:+75494042 Msa0225370:three_prime_UTR
CTTGAGTCTTCCATCTGCCA+TGG 0.541643 2_1:+75489488 Msa0225370:CDS
ATTGTTTGCAATGGAGGGGA+GGG 0.545992 2_1:+75494046 Msa0225370:three_prime_UTR
ATGCTTCTTGTCCCAACTCA+TGG 0.547647 2_1:-75491080 None:intergenic
GAACAACAAATCTTAGGAGT+CGG 0.552204 2_1:-75493171 None:intergenic
TGGTGTGGACATTGTTTACA+TGG 0.554021 2_1:+75491158 Msa0225370:CDS
AATGGTTGAGATGCATGAAA+TGG 0.555074 2_1:+75491032 Msa0225370:CDS
AGACATGATTGCTGCAGCCA+AGG 0.555144 2_1:-75491331 None:intergenic
CTGCCATGGCAAGTCTTGGA+TGG 0.557557 2_1:+75489502 Msa0225370:CDS
GTTTGACAGATACCATGAGT+TGG 0.571800 2_1:+75491068 Msa0225370:CDS
AATTGTTTGCAATGGAGGGG+AGG 0.572605 2_1:+75494045 Msa0225370:three_prime_UTR
CAACAATTGATATGTGAAGT+TGG 0.573630 2_1:+75491138 Msa0225370:CDS
AATAAAACTCCTCTCCACAT+TGG 0.575187 2_1:-75492818 None:intergenic
ATACTCAATGCCAAGTCCTA+CGG 0.577308 2_1:+75493874 Msa0225370:CDS
ACAAATCTTAGGAGTCGGGT+TGG 0.583916 2_1:-75493166 None:intergenic
AAAACCAATTGCTTCTTCAG+AGG 0.589072 2_1:+75489158 Msa0225370:CDS
GTTACTGCCATGGTTGGAGC+TGG 0.590710 2_1:+75489462 Msa0225370:CDS
CTTGGATGGTTTCTCCGGTG+TGG 0.592081 2_1:-75492792 None:intergenic
ACTTCACATATCAATTGTTG+TGG 0.594166 2_1:-75491135 None:intergenic
CATTTGCCATAGAGTGTAGA+GGG 0.594361 2_1:-75491013 None:intergenic
CTTGACTTAATAACCACCAT+GGG 0.594664 2_1:+75489114 Msa0225370:exon
CAAGACACCAGCTCCAACCA+TGG 0.596093 2_1:-75489469 None:intergenic
TGCCGGACACAATGTGGTGT+TGG 0.600214 2_1:+75492748 Msa0225370:CDS
ATGATTCTGTCACCAATAGG+TGG 0.600362 2_1:+75493838 Msa0225370:CDS
TGTCACCAATAGGTGGATTG+AGG 0.602435 2_1:+75493845 Msa0225370:CDS
GATGTTGCATTTGCCTATGC+CGG 0.602926 2_1:+75492731 Msa0225370:CDS
GTGACAGAATCATAAGGAGG+AGG 0.610650 2_1:-75493828 None:intergenic
CCATTTGCCATAGAGTGTAG+AGG 0.615329 2_1:-75491014 None:intergenic
ATAGCAAGCCACATAATGCA+AGG 0.617411 2_1:-75493644 None:intergenic
AAAATTAGAATCACCACACC+AGG 0.621042 2_1:-75490976 None:intergenic
ACTTGACTTAATAACCACCA+TGG 0.625403 2_1:+75489113 Msa0225370:exon
TGGAGACTCAGTTCCCATGG+TGG 0.630497 2_1:-75489127 None:intergenic
ATACCATCCAAGACTTGCCA+TGG 0.631568 2_1:-75489505 None:intergenic
GAATTGCAGGGGTCCTGGTG+TGG 0.635436 2_1:+75490963 Msa0225370:intron
ATTGTTTACATGGTCACCGG+GGG 0.638235 2_1:+75491168 Msa0225370:CDS
ATTGATATGTGAAGTTGGTG+TGG 0.641517 2_1:+75491143 Msa0225370:CDS
CTATTGGTGACAGAATCATA+AGG 0.645120 2_1:-75493834 None:intergenic
TGTTTGTGTCAACACTAGGA+CGG 0.646719 2_1:+75488976 None:intergenic
TCCAAGGGTCCAATGTGGAG+AGG 0.647648 2_1:+75492809 Msa0225370:CDS
CACCACATTGTGTCCGGCAT+AGG 0.647925 2_1:-75492744 None:intergenic
TAAAATGCAAGATATGACAA+AGG 0.648706 2_1:-75493955 None:intergenic
GGCAAGAATAAAATGAACAG+AGG 0.650976 2_1:-75491274 None:intergenic
AGCAACAATCCCGTCCACAC+CGG 0.654369 2_1:+75492778 Msa0225370:CDS
CTTCAAGGAATGCAAAATGG+TGG 0.654515 2_1:+75489421 Msa0225370:CDS
CACACCGGAGAAACCATCCA+AGG 0.663681 2_1:+75492793 Msa0225370:CDS
AGCCAAGGAGATACCAGCAA+TGG 0.663690 2_1:-75491316 None:intergenic
CATTGTTTACATGGTCACCG+GGG 0.672585 2_1:+75491167 Msa0225370:CDS
TTTCTCAGCACAAGAACCAG+AGG 0.673739 2_1:+75489194 Msa0225370:CDS
GAGGGCACCAAAGAATGGGA+AGG 0.676285 2_1:-75493470 None:intergenic
TCGTCAAGTATAGAAACCGT+AGG 0.681478 2_1:-75493890 None:intergenic
AACCATCCAAGGGTCCAATG+TGG 0.683222 2_1:+75492804 Msa0225370:CDS
AATACCCAATAAGAGCAACT+GGG 0.687977 2_1:-75492871 None:intergenic
ACACCGGAGAAACCATCCAA+GGG 0.697058 2_1:+75492794 Msa0225370:CDS
TTGGTGACAGAATCATAAGG+AGG 0.701093 2_1:-75493831 None:intergenic
TGCCTATGCCGGACACAATG+TGG 0.720388 2_1:+75492742 Msa0225370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATATTTTTTAAA+TGG - chr2_1:75490007-75490026 None:intergenic 0.0%
!! TTTGTAAAAAAAAAAAACAA+GGG - chr2_1:75489761-75489780 None:intergenic 10.0%
!!! AATTTAACTTCTAAAAAAAA+AGG + chr2_1:75489843-75489862 Msa0225370:intron 10.0%
!!! ATTTATATTTTTTAAATGGT+TGG - chr2_1:75490003-75490022 None:intergenic 10.0%
!!! CTTTAAAAAAAAAAAAACTA+AGG + chr2_1:75490571-75490590 Msa0225370:intron 10.0%
!! ATTTGAATATTAATGAAATA+TGG - chr2_1:75491982-75492001 None:intergenic 10.0%
!! CAAAAAAAAAAAATTTGATT+CGG + chr2_1:75492289-75492308 Msa0225370:intron 10.0%
!!! TATATAAAATAAAAGTACAA+TGG + chr2_1:75492407-75492426 Msa0225370:intron 10.0%
!!! AAAATAGATTTTTTTTTTTG+TGG - chr2_1:75492531-75492550 None:intergenic 10.0%
!!! TATGTGTAGTTTAAATTTTT+TGG - chr2_1:75489092-75489111 None:intergenic 15.0%
!! GTTTGTAAAAAAAAAAAACA+AGG - chr2_1:75489762-75489781 None:intergenic 15.0%
!! AAATAATAATAATACACCTT+TGG - chr2_1:75490037-75490056 None:intergenic 15.0%
!! AGAAAATATTTAAGAAAAGA+AGG - chr2_1:75491405-75491424 None:intergenic 15.0%
!! ATAATATTATGTTATACCAT+TGG - chr2_1:75491666-75491685 None:intergenic 15.0%
!!! TCAAATTTTTTTTTTTTGTC+AGG - chr2_1:75492287-75492306 None:intergenic 15.0%
!!! TATTTTTTAACTAAACTTGA+TGG + chr2_1:75492560-75492579 Msa0225370:intron 15.0%
!!! TAAAATATCCAATTTTAGAA+AGG - chr2_1:75493219-75493238 None:intergenic 15.0%
!! TAAAACATAACTTATCTTAT+TGG + chr2_1:75493772-75493791 Msa0225370:intron 15.0%
!!! TTTTCTTTACTTTTTTTGTA+AGG + chr2_1:75493978-75493997 Msa0225370:three_prime_UTR 15.0%
!!! TTTCTTTACTTTTTTTGTAA+GGG + chr2_1:75493979-75493998 Msa0225370:three_prime_UTR 15.0%
!!! TTTTGTTTTCAAGAAAAAAA+TGG + chr2_1:75494104-75494123 Msa0225370:three_prime_UTR 15.0%
!!! TGTCAATAAATGTTTTGATA+TGG - chr2_1:75489042-75489061 None:intergenic 20.0%
!!! TTAAATTTTTTGGAACAAAG+AGG - chr2_1:75489082-75489101 None:intergenic 20.0%
!!! AACAAAAGAAAATTGATGAT+TGG + chr2_1:75489385-75489404 Msa0225370:CDS 20.0%
!!! AACTAGAATTTTTCAAACAA+GGG - chr2_1:75489653-75489672 None:intergenic 20.0%
!!! AAACTAGAATTTTTCAAACA+AGG - chr2_1:75489654-75489673 None:intergenic 20.0%
!! AGTTTAAACAATAACCTAAA+CGG - chr2_1:75489790-75489809 None:intergenic 20.0%
!! ACTATTCACTTATTAGAAAA+TGG + chr2_1:75489807-75489826 Msa0225370:intron 20.0%
!!! AGTTTTGAAATTTGAGAATT+GGG - chr2_1:75490115-75490134 None:intergenic 20.0%
!!! TAGTTTTGAAATTTGAGAAT+TGG - chr2_1:75490116-75490135 None:intergenic 20.0%
!! TTCTCAAATTTCAAAACTAT+TGG + chr2_1:75490117-75490136 Msa0225370:intron 20.0%
!! CAATAAACACTTACTTAATT+AGG - chr2_1:75490180-75490199 None:intergenic 20.0%
!! CTAATTAAGTAAGTGTTTAT+TGG + chr2_1:75490178-75490197 Msa0225370:intron 20.0%
!! GTTCATTATGCATTATTTAT+AGG + chr2_1:75490215-75490234 Msa0225370:intron 20.0%
!!! ATCAAGTTTGATTTTAATCA+TGG - chr2_1:75490248-75490267 None:intergenic 20.0%
!! TCATTGAAATAAAGTGAAAA+CGG + chr2_1:75490513-75490532 Msa0225370:intron 20.0%
!! TTTAGTAGTATTTATCAACA+TGG - chr2_1:75491469-75491488 None:intergenic 20.0%
!!! TGTTGATAAATACTACTAAA+AGG + chr2_1:75491469-75491488 Msa0225370:intron 20.0%
!! TACATAATATATGTAAGATC+AGG + chr2_1:75492488-75492507 Msa0225370:intron 20.0%
!! ACATAATATATGTAAGATCA+GGG + chr2_1:75492489-75492508 Msa0225370:intron 20.0%
!! ATTTACTTTGATATCTTTAG+AGG + chr2_1:75493741-75493760 Msa0225370:intron 20.0%
!! TATATTCAAATTGTTTGCAA+TGG + chr2_1:75494037-75494056 Msa0225370:three_prime_UTR 20.0%
! TATTAGAAAATGGATGTTCA+TGG + chr2_1:75489817-75489836 Msa0225370:intron 25.0%
! ATTAGAAAATGGATGTTCAT+GGG + chr2_1:75489818-75489837 Msa0225370:intron 25.0%
!!! TTTTAAATGGTTGGTATAGA+AGG - chr2_1:75489994-75490013 None:intergenic 25.0%
! TAAATAAAAAAAGTGGCCAA+AGG + chr2_1:75490018-75490037 Msa0225370:intron 25.0%
! TAAAGAAGAATAGAAACTTG+CGG - chr2_1:75490068-75490087 None:intergenic 25.0%
!! ATCAAACCATTTTCATAAGT+TGG + chr2_1:75490266-75490285 Msa0225370:intron 25.0%
!!! TATCGCGATACAATTTTTTT+AGG + chr2_1:75490399-75490418 Msa0225370:intron 25.0%
!!! ATTTTTTTGCGTTAACACTT+CGG - chr2_1:75490860-75490879 None:intergenic 25.0%
!! TGGTGATTCTAATTTTATCA+TGG + chr2_1:75490983-75491002 Msa0225370:CDS 25.0%
! ACTGCAAAAAATTCATGATT+TGG + chr2_1:75491197-75491216 Msa0225370:CDS 25.0%
! ACTAAAAGGTAAATAGAGAT+TGG + chr2_1:75491483-75491502 Msa0225370:intron 25.0%
! TTATATAAGCTCATCAATAG+AGG + chr2_1:75491823-75491842 Msa0225370:intron 25.0%
! ATATTCGACTTTATTGAGAA+CGG - chr2_1:75491899-75491918 None:intergenic 25.0%
! TTTAGGTGTCTAAATTGATT+CGG + chr2_1:75492070-75492089 Msa0225370:intron 25.0%
! ACAATGCATTATTATATGCA+GGG + chr2_1:75492126-75492145 Msa0225370:intron 25.0%
!!! TATAAGGTGAATTTTTTGTC+AGG - chr2_1:75492218-75492237 None:intergenic 25.0%
! GACAAAAAATTCACCTTATA+AGG + chr2_1:75492218-75492237 Msa0225370:intron 25.0%
! CATAATATATGTAAGATCAG+GGG + chr2_1:75492490-75492509 Msa0225370:intron 25.0%
!! AGCTAAACAAATAGCAATTT+TGG - chr2_1:75493398-75493417 None:intergenic 25.0%
! TTTCAGATTTGCATTATACT+TGG + chr2_1:75493805-75493824 Msa0225370:intron 25.0%
! TAAAATGCAAGATATGACAA+AGG - chr2_1:75493958-75493977 None:intergenic 25.0%
! AGAAAAAAATGGAGTGATTT+AGG + chr2_1:75494115-75494134 Msa0225370:three_prime_UTR 25.0%
!!! GCAATTGGTTTTTCATTTGT+TGG - chr2_1:75489150-75489169 None:intergenic 30.0%
TATGTTGTTAAGTTTACCTC+TGG - chr2_1:75489213-75489232 None:intergenic 30.0%
!! GAACTTCTAGTTCTAGAATA+CGG - chr2_1:75489571-75489590 None:intergenic 30.0%
!! ATTCTAGAACTAGAAGTTCA+TGG + chr2_1:75489572-75489591 Msa0225370:intron 30.0%
CTCATATTCTCATACTTGTT+AGG - chr2_1:75489608-75489627 None:intergenic 30.0%
!! ATTTTTCAAACAAGGGTTGA+GGG - chr2_1:75489646-75489665 None:intergenic 30.0%
!! AATTTTTCAAACAAGGGTTG+AGG - chr2_1:75489647-75489666 None:intergenic 30.0%
AATATGAGTGACCATATGAT+TGG + chr2_1:75489675-75489694 Msa0225370:intron 30.0%
TCAAACTTGTACCAATCATA+TGG - chr2_1:75489689-75489708 None:intergenic 30.0%
GGGATTTGACATGTAATTTA+CGG - chr2_1:75490095-75490114 None:intergenic 30.0%
TAGCTACCAACTTATGAAAA+TGG - chr2_1:75490275-75490294 None:intergenic 30.0%
TGAAAATCATATAACCTTCC+CGG + chr2_1:75490633-75490652 Msa0225370:intron 30.0%
TATTACCTCTCGAACAAATT+GGG + chr2_1:75490695-75490714 Msa0225370:intron 30.0%
TCATCAATAACGAATTGTTC+AGG + chr2_1:75490737-75490756 Msa0225370:intron 30.0%
!!! ATTCCTGGATGAACATTTTT+TGG + chr2_1:75490774-75490793 Msa0225370:intron 30.0%
! TTTTACAATGTCGAATTGCA+GGG + chr2_1:75490951-75490970 Msa0225370:intron 30.0%
ACTTCACATATCAATTGTTG+TGG - chr2_1:75491138-75491157 None:intergenic 30.0%
CAACAATTGATATGTGAAGT+TGG + chr2_1:75491138-75491157 Msa0225370:CDS 30.0%
AAACGACCAAATTGAAGAAT+TGG - chr2_1:75491529-75491548 None:intergenic 30.0%
TCTTCAATTTGGTCGTTTAA+TGG + chr2_1:75491531-75491550 Msa0225370:intron 30.0%
!! CAATTTTGAAGATGATGTGT+TGG + chr2_1:75491611-75491630 Msa0225370:intron 30.0%
TTATGAGAAAGCCAAAATCA+TGG + chr2_1:75491637-75491656 Msa0225370:intron 30.0%
!! AAGTCTTTCTAAAGTCTCTA+TGG - chr2_1:75491742-75491761 None:intergenic 30.0%
! ATAGAGACTTTAGAAAGACT+TGG + chr2_1:75491741-75491760 Msa0225370:intron 30.0%
! GATTGGATTGTTCTTTTAGT+CGG - chr2_1:75491867-75491886 None:intergenic 30.0%
TATTCGACTTTATTGAGAAC+GGG - chr2_1:75491898-75491917 None:intergenic 30.0%
TCAAATTGGTCACAATATGT+GGG - chr2_1:75492047-75492066 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG + chr2_1:75492125-75492144 Msa0225370:intron 30.0%
CAATGCATTATTATATGCAG+GGG + chr2_1:75492127-75492146 Msa0225370:intron 30.0%
ACCTTATAAGGTGAATAAGT+GGG - chr2_1:75492175-75492194 None:intergenic 30.0%
AATTCACCTTATAAGGTGAA+TGG - chr2_1:75492225-75492244 None:intergenic 30.0%
! ATTTCTGGACTAAAGTCAAA+TGG - chr2_1:75492384-75492403 None:intergenic 30.0%
!!! CAATCATATTTTAGCTCAGT+TGG + chr2_1:75492457-75492476 Msa0225370:intron 30.0%
TAGTTACTCAACAATTGCAT+GGG + chr2_1:75492610-75492629 Msa0225370:intron 30.0%
AAGAAATTGAAAACAGTTCC+TGG - chr2_1:75492698-75492717 None:intergenic 30.0%
TTCAATTTCTTCAGTGCTTT+AGG + chr2_1:75492707-75492726 Msa0225370:intron 30.0%
CTTCTCTTAATAAACCTACT+TGG + chr2_1:75492930-75492949 Msa0225370:CDS 30.0%
TGTGAAGAATCATATGCAAA+TGG - chr2_1:75493034-75493053 None:intergenic 30.0%
!!! ACGCAATTTTTTGACCATTA+CGG - chr2_1:75493140-75493159 None:intergenic 30.0%
! ATTTTATCGTTATCCGATGA+TGG + chr2_1:75493327-75493346 Msa0225370:intron 30.0%
GGACTTACAAAATATGTTGT+GGG - chr2_1:75493526-75493545 None:intergenic 30.0%
TGGACTTACAAAATATGTTG+TGG - chr2_1:75493527-75493546 None:intergenic 30.0%
!! TTGCTATTTACAAACCTAAG+AGG + chr2_1:75493660-75493679 Msa0225370:CDS 30.0%
TTTCTATACTTGACGATTCA+TGG + chr2_1:75493897-75493916 Msa0225370:exon 30.0%
ATTCAAATTGTTTGCAATGG+AGG + chr2_1:75494040-75494059 Msa0225370:three_prime_UTR 30.0%
TTCAAATTGTTTGCAATGGA+GGG + chr2_1:75494041-75494060 Msa0225370:three_prime_UTR 30.0%
!!! ATTTTAGCTCTCTCAGAAAA+TGG + chr2_1:75494076-75494095 Msa0225370:three_prime_UTR 30.0%
ACTTGACTTAATAACCACCA+TGG + chr2_1:75489113-75489132 Msa0225370:exon 35.0%
CTTGACTTAATAACCACCAT+GGG + chr2_1:75489114-75489133 Msa0225370:exon 35.0%
AAAACCAATTGCTTCTTCAG+AGG + chr2_1:75489158-75489177 Msa0225370:CDS 35.0%
GCATTCCTTGAAGAAGTTAT+GGG - chr2_1:75489414-75489433 None:intergenic 35.0%
TGCATTCCTTGAAGAAGTTA+TGG - chr2_1:75489415-75489434 None:intergenic 35.0%
CTTCTTCAAGGAATGCAAAA+TGG + chr2_1:75489418-75489437 Msa0225370:CDS 35.0%
! TCATACTTGTTAGGACGAAA+AGG - chr2_1:75489599-75489618 None:intergenic 35.0%
TTTACAAACCAACACCGTTT+AGG + chr2_1:75489773-75489792 Msa0225370:intron 35.0%
AACAATAACCTAAACGGTGT+TGG - chr2_1:75489784-75489803 None:intergenic 35.0%
GAAAATCATATAACCTTCCC+GGG + chr2_1:75490634-75490653 Msa0225370:intron 35.0%
AGACGAAATTTAAATCACCC+GGG - chr2_1:75490654-75490673 None:intergenic 35.0%
GAGACGAAATTTAAATCACC+CGG - chr2_1:75490655-75490674 None:intergenic 35.0%
CTATTACCTCTCGAACAAAT+TGG + chr2_1:75490694-75490713 Msa0225370:intron 35.0%
GAGAATCTAAGTTTGATTCC+TGG + chr2_1:75490759-75490778 Msa0225370:intron 35.0%
TGACCAAAAAATGTTCATCC+AGG - chr2_1:75490780-75490799 None:intergenic 35.0%
! GTTAACACTTCGGTTCTAAT+GGG - chr2_1:75490850-75490869 None:intergenic 35.0%
ACCACTAATTTGACATCTGA+AGG + chr2_1:75490892-75490911 Msa0225370:intron 35.0%
TCCTTCAGATGTCAAATTAG+TGG - chr2_1:75490896-75490915 None:intergenic 35.0%
! GTTTTACAATGTCGAATTGC+AGG + chr2_1:75490950-75490969 Msa0225370:intron 35.0%
TTTACAATGTCGAATTGCAG+GGG + chr2_1:75490952-75490971 Msa0225370:intron 35.0%
AAAATTAGAATCACCACACC+AGG - chr2_1:75490979-75490998 None:intergenic 35.0%
AATGGTTGAGATGCATGAAA+TGG + chr2_1:75491032-75491051 Msa0225370:CDS 35.0%
ATGAAATGGTTCCAGGAAAA+CGG + chr2_1:75491046-75491065 Msa0225370:CDS 35.0%
TTTGACAGATACCATGAGTT+GGG + chr2_1:75491069-75491088 Msa0225370:CDS 35.0%
!! ATTGATATGTGAAGTTGGTG+TGG + chr2_1:75491143-75491162 Msa0225370:CDS 35.0%
GGCAAGAATAAAATGAACAG+AGG - chr2_1:75491277-75491296 None:intergenic 35.0%
!! GGTTGATGATTGATACTGAA+TGG - chr2_1:75491384-75491403 None:intergenic 35.0%
TAGCGACCAATTCTTCAATT+TGG + chr2_1:75491520-75491539 Msa0225370:intron 35.0%
! ACCATTGGTATCCATGATTT+TGG - chr2_1:75491651-75491670 None:intergenic 35.0%
AGTTATCAAGTACCTTACCT+TGG + chr2_1:75491703-75491722 Msa0225370:intron 35.0%
GTCAAATTGGTCACAATATG+TGG - chr2_1:75492048-75492067 None:intergenic 35.0%
! TGTGACCAATTTGACGTTTT+AGG + chr2_1:75492053-75492072 Msa0225370:intron 35.0%
AGACACCTAAAACGTCAAAT+TGG - chr2_1:75492061-75492080 None:intergenic 35.0%
CCTTATAAGGTGAATAAGTG+GGG - chr2_1:75492174-75492193 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG - chr2_1:75492176-75492195 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG - chr2_1:75492187-75492206 None:intergenic 35.0%
! GTGAATGGATTCACCTTATA+AGG - chr2_1:75492234-75492253 None:intergenic 35.0%
GTGAATCCATTCACCTTATA+AGG + chr2_1:75492240-75492259 Msa0225370:intron 35.0%
TGGCTAGAATTCACCTTATA+AGG - chr2_1:75492187-75492206 None:intergenic 35.0%
!!! CATATTTTAGCTCAGTTGGT+AGG + chr2_1:75492461-75492480 Msa0225370:intron 35.0%
GTAGTTACTCAACAATTGCA+TGG + chr2_1:75492609-75492628 Msa0225370:intron 35.0%
ATGGGTGGCTTCATTAAAAA+AGG + chr2_1:75492628-75492647 Msa0225370:intron 35.0%
TGGGTGGCTTCATTAAAAAA+GGG + chr2_1:75492629-75492648 Msa0225370:intron 35.0%
AATAAAACTCCTCTCCACAT+TGG - chr2_1:75492821-75492840 None:intergenic 35.0%
TATTTCCCAGTTGCTCTTAT+TGG + chr2_1:75492866-75492885 Msa0225370:CDS 35.0%
ATTTCCCAGTTGCTCTTATT+GGG + chr2_1:75492867-75492886 Msa0225370:CDS 35.0%
AATACCCAATAAGAGCAACT+GGG - chr2_1:75492874-75492893 None:intergenic 35.0%
!! CTTATTGGGTATTGGATGTT+TGG + chr2_1:75492881-75492900 Msa0225370:CDS 35.0%
AAGCTATCAGGTATGTATGA+TGG + chr2_1:75492997-75493016 Msa0225370:intron 35.0%
GTCTCAATCATGTCAAAAAC+AGG - chr2_1:75493118-75493137 None:intergenic 35.0%
AACAACAAATCTTAGGAGTC+GGG - chr2_1:75493173-75493192 None:intergenic 35.0%
GAACAACAAATCTTAGGAGT+CGG - chr2_1:75493174-75493193 None:intergenic 35.0%
CATTGCGAACAACAAATCTT+AGG - chr2_1:75493180-75493199 None:intergenic 35.0%
GTTGTTCGCAATGTTTATGT+TGG + chr2_1:75493187-75493206 Msa0225370:CDS 35.0%
TTCAGCATTCACAATGTTTG+TGG + chr2_1:75493441-75493460 Msa0225370:intron 35.0%
TCAGCATTCACAATGTTTGT+GGG + chr2_1:75493442-75493461 Msa0225370:intron 35.0%
! CTATTGGTGACAGAATCATA+AGG - chr2_1:75493837-75493856 None:intergenic 35.0%
CTTATGATTCTGTCACCAAT+AGG + chr2_1:75493835-75493854 Msa0225370:CDS 35.0%
TCATGGATGCATGTGTATAA+TGG + chr2_1:75493914-75493933 Msa0225370:three_prime_UTR 35.0%
!!! TTTTGTAAGGGTGCTTTGAT+TGG + chr2_1:75493991-75494010 Msa0225370:three_prime_UTR 35.0%
GATTGGAACAAATGGAGATA+AGG + chr2_1:75494008-75494027 Msa0225370:three_prime_UTR 35.0%
TCAAATTGTTTGCAATGGAG+GGG + chr2_1:75494042-75494061 Msa0225370:three_prime_UTR 35.0%
CTTCAAGGAATGCAAAATGG+TGG + chr2_1:75489421-75489440 Msa0225370:CDS 40.0%
! TTTTCACAACGTTACTGCCA+TGG + chr2_1:75489452-75489471 Msa0225370:CDS 40.0%
AAGAAGACAACGATCTTCGT+TGG + chr2_1:75489888-75489907 Msa0225370:intron 40.0%
GAAATTTAAATCACCCGGGA+AGG - chr2_1:75490650-75490669 None:intergenic 40.0%
GTTTGGTCATAAGGGAAGTA+AGG - chr2_1:75490805-75490824 None:intergenic 40.0%
AATCCGGAGTTTGGTCATAA+GGG - chr2_1:75490813-75490832 None:intergenic 40.0%
TAATCCGGAGTTTGGTCATA+AGG - chr2_1:75490814-75490833 None:intergenic 40.0%
! CGTTAACACTTCGGTTCTAA+TGG - chr2_1:75490851-75490870 None:intergenic 40.0%
TAATCACCCTCTACACTCTA+TGG + chr2_1:75491007-75491026 Msa0225370:CDS 40.0%
CATTTGCCATAGAGTGTAGA+GGG - chr2_1:75491016-75491035 None:intergenic 40.0%
! TATCTGTCAAACCGTTTTCC+TGG - chr2_1:75491060-75491079 None:intergenic 40.0%
GTTTGACAGATACCATGAGT+TGG + chr2_1:75491068-75491087 Msa0225370:CDS 40.0%
! GAAGCATTTGGAGAAAAGCT+TGG + chr2_1:75491096-75491115 Msa0225370:CDS 40.0%
TGGTGTGGACATTGTTTACA+TGG + chr2_1:75491158-75491177 Msa0225370:CDS 40.0%
GACATTGTTTACATGGTCAC+CGG + chr2_1:75491165-75491184 Msa0225370:CDS 40.0%
ACATTGTTTACATGGTCACC+GGG + chr2_1:75491166-75491185 Msa0225370:CDS 40.0%
GCCAAAATCATGGATACCAA+TGG + chr2_1:75491647-75491666 Msa0225370:intron 40.0%
GCATTATTATATGCAGGGGT+CGG + chr2_1:75492131-75492150 Msa0225370:intron 40.0%
CATTATTATATGCAGGGGTC+GGG + chr2_1:75492132-75492151 Msa0225370:intron 40.0%
ATTATTATATGCAGGGGTCG+GGG + chr2_1:75492133-75492152 Msa0225370:intron 40.0%
CCCCACTTATTCACCTTATA+AGG + chr2_1:75492171-75492190 Msa0225370:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr2_1:75492189-75492208 Msa0225370:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG - chr2_1:75492207-75492226 None:intergenic 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr2_1:75492189-75492208 Msa0225370:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG - chr2_1:75492207-75492226 None:intergenic 40.0%
AAGATCAGGGGTTCAAACAT+CGG + chr2_1:75492502-75492521 Msa0225370:intron 40.0%
TTACTCAACAATTGCATGGG+TGG + chr2_1:75492613-75492632 Msa0225370:intron 40.0%
CAATACCCAATAAGAGCAAC+TGG - chr2_1:75492875-75492894 None:intergenic 40.0%
CAGTTGCTCTTATTGGGTAT+TGG + chr2_1:75492873-75492892 Msa0225370:CDS 40.0%
TGACATGATTGAGACCGTAA+TGG + chr2_1:75493123-75493142 Msa0225370:CDS 40.0%
!! GGTGAGCACCTTTCTAAAAT+TGG + chr2_1:75493208-75493227 Msa0225370:intron 40.0%
!! ATCCGATGATGGAGATTTCA+TGG + chr2_1:75493338-75493357 Msa0225370:intron 40.0%
!! TCCGATGATGGAGATTTCAT+GGG + chr2_1:75493339-75493358 Msa0225370:intron 40.0%
ACCCATGAAATCTCCATCAT+CGG - chr2_1:75493343-75493362 None:intergenic 40.0%
GGAATAACCTTCCCATTCTT+TGG + chr2_1:75493463-75493482 Msa0225370:CDS 40.0%
TCCTCCAAAAAATCCAAGGA+GGG - chr2_1:75493491-75493510 None:intergenic 40.0%
ATCCTCCAAAAAATCCAAGG+AGG - chr2_1:75493492-75493511 None:intergenic 40.0%
CCAATCCTCCAAAAAATCCA+AGG - chr2_1:75493495-75493514 None:intergenic 40.0%
!!! CCTTGGATTTTTTGGAGGAT+TGG + chr2_1:75493492-75493511 Msa0225370:CDS 40.0%
TGTAGCTTCCTTGCATTATG+TGG + chr2_1:75493636-75493655 Msa0225370:intron 40.0%
ATAGCAAGCCACATAATGCA+AGG - chr2_1:75493647-75493666 None:intergenic 40.0%
CAAGACAAGCTAAACCTCTT+AGG - chr2_1:75493677-75493696 None:intergenic 40.0%
!! CTAAGAGGTTTAGCTTGTCT+TGG + chr2_1:75493675-75493694 Msa0225370:CDS 40.0%
CTTGTCTTGGTTCACAAACT+GGG + chr2_1:75493688-75493707 Msa0225370:CDS 40.0%
! TTGGTGACAGAATCATAAGG+AGG - chr2_1:75493834-75493853 None:intergenic 40.0%
ATGATTCTGTCACCAATAGG+TGG + chr2_1:75493838-75493857 Msa0225370:CDS 40.0%
! ATTAGCCTCAATCCACCTAT+TGG - chr2_1:75493853-75493872 None:intergenic 40.0%
ATACTCAATGCCAAGTCCTA+CGG + chr2_1:75493874-75493893 Msa0225370:CDS 40.0%
AGTATAGAAACCGTAGGACT+TGG - chr2_1:75493887-75493906 None:intergenic 40.0%
TCGTCAAGTATAGAAACCGT+AGG - chr2_1:75493893-75493912 None:intergenic 40.0%
ATGCAAGATATGACAAAGGC+AGG - chr2_1:75493954-75493973 None:intergenic 40.0%
GGTGCTTTGATTGGAACAAA+TGG + chr2_1:75494000-75494019 Msa0225370:three_prime_UTR 40.0%
! TCAGCCTCTGAAGAAGCAAT+TGG - chr2_1:75489165-75489184 None:intergenic 45.0%
TGCTTCTTCAGAGGCTGAAA+AGG + chr2_1:75489167-75489186 Msa0225370:CDS 45.0%
TTTCTCAGCACAAGAACCAG+AGG + chr2_1:75489194-75489213 Msa0225370:CDS 45.0%
GGCTTCCCATAACTTCTTCA+AGG + chr2_1:75489406-75489425 Msa0225370:CDS 45.0%
ATACCATCCAAGACTTGCCA+TGG - chr2_1:75489508-75489527 None:intergenic 45.0%
CTTCCCTTATGACCAAACTC+CGG + chr2_1:75490807-75490826 Msa0225370:intron 45.0%
TGACCAAACTCCGGATTATG+AGG + chr2_1:75490816-75490835 Msa0225370:intron 45.0%
GGAAAGAGGTCCTCATAATC+CGG - chr2_1:75490829-75490848 None:intergenic 45.0%
! CTTCGGTTCTAATGGGAAAG+AGG - chr2_1:75490843-75490862 None:intergenic 45.0%
CCATTTGCCATAGAGTGTAG+AGG - chr2_1:75491017-75491036 None:intergenic 45.0%
CCTCTACACTCTATGGCAAA+TGG + chr2_1:75491014-75491033 Msa0225370:CDS 45.0%
GAGATGCATGAAATGGTTCC+AGG + chr2_1:75491039-75491058 Msa0225370:CDS 45.0%
ATGCTTCTTGTCCCAACTCA+TGG - chr2_1:75491083-75491102 None:intergenic 45.0%
!! GAGTTGGGACAAGAAGCATT+TGG + chr2_1:75491084-75491103 Msa0225370:CDS 45.0%
TTGGAGAAAAGCTTGGACTC+TGG + chr2_1:75491103-75491122 Msa0225370:CDS 45.0%
CATTGTTTACATGGTCACCG+GGG + chr2_1:75491167-75491186 Msa0225370:CDS 45.0%
ATTGTTTACATGGTCACCGG+GGG + chr2_1:75491168-75491187 Msa0225370:CDS 45.0%
!! TTTTTGCAGTGATTTGCCCC+CGG - chr2_1:75491187-75491206 None:intergenic 45.0%
GGAGTTGAAGTTGGGAAGAT+GGG - chr2_1:75491298-75491317 None:intergenic 45.0%
TGGAGTTGAAGTTGGGAAGA+TGG - chr2_1:75491299-75491318 None:intergenic 45.0%
CCAGCAATGGAGTTGAAGTT+GGG - chr2_1:75491306-75491325 None:intergenic 45.0%
ACCAGCAATGGAGTTGAAGT+TGG - chr2_1:75491307-75491326 None:intergenic 45.0%
CTGCAGCAATCATGTCTTTG+AGG + chr2_1:75491337-75491356 Msa0225370:CDS 45.0%
ACCTTACCTTGGATGATCGA+AGG + chr2_1:75491714-75491733 Msa0225370:intron 45.0%
TCCTTCGATCATCCAAGGTA+AGG - chr2_1:75491718-75491737 None:intergenic 45.0%
ATGGATCCTTCGATCATCCA+AGG - chr2_1:75491723-75491742 None:intergenic 45.0%
ACACGTTGCTCATCAGTAAG+AGG - chr2_1:75491786-75491805 None:intergenic 45.0%
TTATTGAGAACGGGTCGTGA+TGG - chr2_1:75491889-75491908 None:intergenic 45.0%
AAAGGGAGTTCAACCAGATG+TGG + chr2_1:75492646-75492665 Msa0225370:intron 45.0%
!! AGTTGTGGCTTTGTAGCCAT+AGG - chr2_1:75492672-75492691 None:intergenic 45.0%
TACAAAGCCACAACTACACC+AGG + chr2_1:75492677-75492696 Msa0225370:intron 45.0%
AACAGTTCCTGGTGTAGTTG+TGG - chr2_1:75492687-75492706 None:intergenic 45.0%
GATGTTGCATTTGCCTATGC+CGG + chr2_1:75492731-75492750 Msa0225370:CDS 45.0%
GCTGCAACTATAAGCCAAGT+AGG - chr2_1:75492947-75492966 None:intergenic 45.0%
ACAAATCTTAGGAGTCGGGT+TGG - chr2_1:75493169-75493188 None:intergenic 45.0%
GCTTGTCTTGGTTCACAAAC+TGG + chr2_1:75493687-75493706 Msa0225370:CDS 45.0%
GTGACAGAATCATAAGGAGG+AGG - chr2_1:75493831-75493850 None:intergenic 45.0%
!! TGTCACCAATAGGTGGATTG+AGG + chr2_1:75493845-75493864 Msa0225370:CDS 45.0%
AATTGTTTGCAATGGAGGGG+AGG + chr2_1:75494045-75494064 Msa0225370:three_prime_UTR 45.0%
ATTGTTTGCAATGGAGGGGA+GGG + chr2_1:75494046-75494065 Msa0225370:three_prime_UTR 45.0%
!! AAAAATATAAATAAAAAAAG+TGG + chr2_1:75490011-75490030 Msa0225370:intron 5.0%
!!! TTATTTTATATATTAATTTC+TGG - chr2_1:75492399-75492418 None:intergenic 5.0%
!!! TTAAAGAAAAATAAATTTTA+TGG - chr2_1:75493547-75493566 None:intergenic 5.0%
!!! TATTTTTCTTTAAATATATT+TGG + chr2_1:75493554-75493573 Msa0225370:intron 5.0%
TGTTGGAGACTCAGTTCCCA+TGG - chr2_1:75489133-75489152 None:intergenic 50.0%
CACAACGTTACTGCCATGGT+TGG + chr2_1:75489456-75489475 Msa0225370:CDS 50.0%
CTTGAGTCTTCCATCTGCCA+TGG + chr2_1:75489488-75489507 Msa0225370:CDS 50.0%
! CTGAGCCCAATTTGTTCGAG+AGG - chr2_1:75490703-75490722 None:intergenic 50.0%
CTCTCGAACAAATTGGGCTC+AGG + chr2_1:75490701-75490720 Msa0225370:intron 50.0%
TCGAACAAATTGGGCTCAGG+TGG + chr2_1:75490704-75490723 Msa0225370:intron 50.0%
GGTCCTCATAATCCGGAGTT+TGG - chr2_1:75490822-75490841 None:intergenic 50.0%
CCCAACTTCAACTCCATTGC+TGG + chr2_1:75491303-75491322 Msa0225370:CDS 50.0%
CTCCATTGCTGGTATCTCCT+TGG + chr2_1:75491314-75491333 Msa0225370:CDS 50.0%
AGCCAAGGAGATACCAGCAA+TGG - chr2_1:75491319-75491338 None:intergenic 50.0%
AGACATGATTGCTGCAGCCA+AGG - chr2_1:75491334-75491353 None:intergenic 50.0%
TCTCGTGAGCATAGCTCAGT+TGG + chr2_1:75492099-75492118 Msa0225370:intron 50.0%
GTGAGCATAGCTCAGTTGGT+AGG + chr2_1:75492103-75492122 Msa0225370:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG - chr2_1:75492167-75492186 None:intergenic 50.0%
GTTCAACCAGATGTGGCCTA+TGG + chr2_1:75492653-75492672 Msa0225370:intron 50.0%
TTGTAGCCATAGGCCACATC+TGG - chr2_1:75492662-75492681 None:intergenic 50.0%
CTCCAACACCACATTGTGTC+CGG - chr2_1:75492753-75492772 None:intergenic 50.0%
ACACCGGAGAAACCATCCAA+GGG + chr2_1:75492794-75492813 Msa0225370:CDS 50.0%
AACCATCCAAGGGTCCAATG+TGG + chr2_1:75492804-75492823 Msa0225370:CDS 50.0%
!! CAAGGAGGGCACCAAAGAAT+GGG - chr2_1:75493477-75493496 None:intergenic 50.0%
!!! GGTGCCCTCCTTGGATTTTT+TGG + chr2_1:75493484-75493503 Msa0225370:CDS 50.0%
!!! GCCCTCCTTGGATTTTTTGG+AGG + chr2_1:75493487-75493506 Msa0225370:CDS 50.0%
TGGAGACTCAGTTCCCATGG+TGG - chr2_1:75489130-75489149 None:intergenic 55.0%
GTTACTGCCATGGTTGGAGC+TGG + chr2_1:75489462-75489481 Msa0225370:CDS 55.0%
CAAGACACCAGCTCCAACCA+TGG - chr2_1:75489472-75489491 None:intergenic 55.0%
CCAAGACTTGCCATGGCAGA+TGG - chr2_1:75489501-75489520 None:intergenic 55.0%
CCATCTGCCATGGCAAGTCT+TGG + chr2_1:75489498-75489517 Msa0225370:CDS 55.0%
CTGCCATGGCAAGTCTTGGA+TGG + chr2_1:75489502-75489521 Msa0225370:CDS 55.0%
ATGTCGAATTGCAGGGGTCC+TGG + chr2_1:75490958-75490977 Msa0225370:intron 55.0%
!! GAGAACGGGTCGTGATGGAT+TGG - chr2_1:75491884-75491903 None:intergenic 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG - chr2_1:75492165-75492184 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG - chr2_1:75492166-75492185 None:intergenic 55.0%
TGCCTATGCCGGACACAATG+TGG + chr2_1:75492742-75492761 Msa0225370:CDS 55.0%
CACCACATTGTGTCCGGCAT+AGG - chr2_1:75492747-75492766 None:intergenic 55.0%
TGCCGGACACAATGTGGTGT+TGG + chr2_1:75492748-75492767 Msa0225370:CDS 55.0%
AGCAACAATCCCGTCCACAC+CGG + chr2_1:75492778-75492797 Msa0225370:CDS 55.0%
ATGGTTTCTCCGGTGTGGAC+GGG - chr2_1:75492790-75492809 None:intergenic 55.0%
GATGGTTTCTCCGGTGTGGA+CGG - chr2_1:75492791-75492810 None:intergenic 55.0%
CTTGGATGGTTTCTCCGGTG+TGG - chr2_1:75492795-75492814 None:intergenic 55.0%
CACACCGGAGAAACCATCCA+AGG + chr2_1:75492793-75492812 Msa0225370:CDS 55.0%
GGACCCTTGGATGGTTTCTC+CGG - chr2_1:75492800-75492819 None:intergenic 55.0%
CTCCACATTGGACCCTTGGA+TGG - chr2_1:75492809-75492828 None:intergenic 55.0%
TCCAAGGGTCCAATGTGGAG+AGG + chr2_1:75492809-75492828 Msa0225370:CDS 55.0%
TCCTCTCCACATTGGACCCT+TGG - chr2_1:75492813-75492832 None:intergenic 55.0%
!! GAGGGCACCAAAGAATGGGA+AGG - chr2_1:75493473-75493492 None:intergenic 55.0%
!! CCAAGGAGGGCACCAAAGAA+TGG - chr2_1:75493478-75493497 None:intergenic 55.0%
!! CCATTCTTTGGTGCCCTCCT+TGG + chr2_1:75493475-75493494 Msa0225370:CDS 55.0%
GAATTGCAGGGGTCCTGGTG+TGG + chr2_1:75490963-75490982 Msa0225370:intron 60.0%
AGGGGTCGGGGTTCGAACCC+CGG + chr2_1:75492145-75492164 Msa0225370:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75488990 75494238 75488990 ID=Msa0225370;Name=Msa0225370
chr2_1 mRNA 75488990 75494238 75488990 ID=Msa0225370-mRNA-1;Parent=Msa0225370;Name=Msa0225370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=142|0.85|0.87|1|1|1|8|329|426
chr2_1 exon 75488990 75489215 75488990 ID=Msa0225370-mRNA-1:exon:22586;Parent=Msa0225370-mRNA-1
chr2_1 exon 75489366 75489523 75489366 ID=Msa0225370-mRNA-1:exon:22587;Parent=Msa0225370-mRNA-1
chr2_1 exon 75490972 75491358 75490972 ID=Msa0225370-mRNA-1:exon:22588;Parent=Msa0225370-mRNA-1
chr2_1 exon 75492721 75493006 75492721 ID=Msa0225370-mRNA-1:exon:22589;Parent=Msa0225370-mRNA-1
chr2_1 exon 75493103 75493208 75493103 ID=Msa0225370-mRNA-1:exon:22590;Parent=Msa0225370-mRNA-1
chr2_1 exon 75493446 75493537 75493446 ID=Msa0225370-mRNA-1:exon:22591;Parent=Msa0225370-mRNA-1
chr2_1 exon 75493641 75493709 75493641 ID=Msa0225370-mRNA-1:exon:22592;Parent=Msa0225370-mRNA-1
chr2_1 exon 75493811 75494238 75493811 ID=Msa0225370-mRNA-1:exon:22593;Parent=Msa0225370-mRNA-1
chr2_1 five_prime_UTR 75488990 75489131 75488990 ID=Msa0225370-mRNA-1:five_prime_utr;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75489132 75489215 75489132 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75489366 75489523 75489366 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75490972 75491358 75490972 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75492721 75493006 75492721 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75493103 75493208 75493103 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75493446 75493537 75493446 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75493641 75493709 75493641 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 CDS 75493811 75493909 75493811 ID=Msa0225370-mRNA-1:cds;Parent=Msa0225370-mRNA-1
chr2_1 three_prime_UTR 75493910 75494238 75493910 ID=Msa0225370-mRNA-1:three_prime_utr;Parent=Msa0225370-mRNA-1
Gene Sequence

>Msa0225370

ATGGGAACTGAGTCTCCAACAAATGAAAAACCAATTGCTTCTTCAGAGGCTGAAAAGGTCTCTTTCTCAGCACAAGAACCAGAGATAGATAAAAGAACAGCTGAACAAAAGAAAATTGATGATTGGCTTCCCATAACTTCTTCAAGGAATGCAAAATGGTGGTACGCAGCTTTTCACAACGTTACTGCCATGGTTGGAGCTGGTGTCTTGAGTCTTCCATCTGCCATGGCAAGTCTTGGATGGGGTCCTGGTGTGGTGATTCTAATTTTATCATGGATAATCACCCTCTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCAGGAAAACGGTTTGACAGATACCATGAGTTGGGACAAGAAGCATTTGGAGAAAAGCTTGGACTCTGGATTGTCGTGCCACAACAATTGATATGTGAAGTTGGTGTGGACATTGTTTACATGGTCACCGGGGGCAAATCACTGCAAAAAATTCATGATTTGGTGTGTAAAAAAAATTGCAAATCAATGAAAACTACTTATTTCATCATGATATTTGCCTCTGTTCATTTTATTCTTGCCCATCTTCCCAACTTCAACTCCATTGCTGGTATCTCCTTGGCTGCAGCAATCATGTCTTTGAGTGCTTTAGGTGATGTTGCATTTGCCTATGCCGGACACAATGTGGTGTTGGAGATTCAAGCAACAATCCCGTCCACACCGGAGAAACCATCCAAGGGTCCAATGTGGAGAGGAGTTTTATTAGCATATATTGTTGTAGCTCTGTGTTATTTCCCAGTTGCTCTTATTGGGTATTGGATGTTTGGCAATTCAGTTGCTGATAATATTCTTACTTCTCTTAATAAACCTACTTGGCTTATAGTTGCAGCTAACATGTTTGTTGTCATTCATGTTATAGGAAGCTATCAGTTGTATGCAATGCCTGTTTTTGACATGATTGAGACCGTAATGGTCAAAAAATTGCGTTTCAAGCCAACCCGACTCCTAAGATTTGTTGTTCGCAATGTTTATGTTGCATTCACAATGTTTGTGGGAATAACCTTCCCATTCTTTGGTGCCCTCCTTGGATTTTTTGGAGGATTGGCATTTGCTCCCACAACATATTTTCTTCCTTGCATTATGTGGCTTGCTATTTACAAACCTAAGAGGTTTAGCTTGTCTTGGTTCACAAACTGGATTTGCATTATACTTGGCCTCCTCCTTATGATTCTGTCACCAATAGGTGGATTGAGGCTAATCATACTCAATGCCAAGTCCTACGGTTTCTATACTTGA

Protein sequence

>Msa0225370

MGTESPTNEKPIASSEAEKVSFSAQEPEIDKRTAEQKKIDDWLPITSSRNAKWWYAAFHNVTAMVGAGVLSLPSAMASLGWGPGVVILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQEAFGEKLGLWIVVPQQLICEVGVDIVYMVTGGKSLQKIHDLVCKKNCKSMKTTYFIMIFASVHFILAHLPNFNSIAGISLAAAIMSLSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVLLAYIVVALCYFPVALIGYWMFGNSVADNILTSLNKPTWLIVAANMFVVIHVIGSYQLYAMPVFDMIETVMVKKLRFKPTRLLRFVVRNVYVAFTMFVGITFPFFGALLGFFGGLAFAPTTYFLPCIMWLAIYKPKRFSLSWFTNWICIILGLLLMILSPIGGLRLIILNAKSYGFYT*