Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129010 | XP_003626362.1 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 2.19e-80 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129010 | sp|Q02610|SODC_PEA | 80.263 | 152 | 9 | 1 | 1 | 131 | 1 | 152 | 1.59e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129010 | B7FGV9 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 1.05e-80 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093720 | Msa1129010 | 0.914205 | 2.519997e-84 | -8.615850e-47 |
| Msa0616560 | Msa1129010 | 0.804933 | 1.702962e-49 | -8.615850e-47 |
| Msa0641020 | Msa1129010 | -0.828851 | 7.145564e-55 | -8.615850e-47 |
| Msa0641030 | Msa1129010 | -0.811567 | 6.564184e-51 | -8.615850e-47 |
| Msa0645460 | Msa1129010 | -0.808795 | 2.598887e-50 | -8.615850e-47 |
| Msa0648370 | Msa1129010 | 0.814284 | 1.666011e-51 | -8.615850e-47 |
| Msa0660880 | Msa1129010 | 0.800566 | 1.357033e-48 | -8.615850e-47 |
| Msa0679560 | Msa1129010 | -0.835188 | 1.940655e-56 | -8.615850e-47 |
| Msa0716740 | Msa1129010 | 0.820951 | 5.229716e-53 | -8.615850e-47 |
| Msa0799290 | Msa1129010 | 0.812416 | 4.285653e-51 | -8.615850e-47 |
| Msa0837510 | Msa1129010 | 0.811217 | 7.816604e-51 | -8.615850e-47 |
| Msa0135590 | Msa1129010 | -0.820448 | 6.821935e-53 | -8.615850e-47 |
| Msa0212490 | Msa1129010 | 0.814078 | 1.850322e-51 | -8.615850e-47 |
| Msa0225370 | Msa1129010 | -0.812639 | 3.831285e-51 | -8.615850e-47 |
| Msa0439700 | Msa1129010 | -0.804951 | 1.688231e-49 | -8.615850e-47 |
| Msa0453220 | Msa1129010 | -0.812913 | 3.336414e-51 | -8.615850e-47 |
| Msa0457370 | Msa1129010 | -0.812463 | 4.187009e-51 | -8.615850e-47 |
| Msa1001210 | Msa1129010 | -0.817854 | 2.657501e-52 | -8.615850e-47 |
| Msa1008340 | Msa1129010 | -0.833619 | 4.807207e-56 | -8.615850e-47 |
| Msa1081710 | Msa1129010 | -0.800387 | 1.475811e-48 | -8.615850e-47 |
| Msa0241580 | Msa1129010 | -0.813469 | 2.519703e-51 | -8.615850e-47 |
| Msa0256660 | Msa1129010 | -0.817286 | 3.567108e-52 | -8.615850e-47 |
| Msa0279490 | Msa1129010 | -0.808876 | 2.497045e-50 | -8.615850e-47 |
| Msa1129010 | Msa1139240 | -0.819624 | 1.053559e-52 | -8.615850e-47 |
| Msa1129010 | Msa1261970 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa1129010 | Msa1445250 | -0.819767 | 9.769573e-53 | -8.615850e-47 |
| Msa0501470 | Msa1129010 | -0.801269 | 9.751077e-49 | -8.615850e-47 |
| Msa0544930 | Msa1129010 | -0.805545 | 1.267442e-49 | -8.615850e-47 |
| Msa0563140 | Msa1129010 | -0.811507 | 6.763803e-51 | -8.615850e-47 |
| Msa0886660 | Msa1129010 | -0.836506 | 8.990157e-57 | -8.615850e-47 |
| Msa0912160 | Msa1129010 | -0.805624 | 1.220394e-49 | -8.615850e-47 |
| Msa0912230 | Msa1129010 | -0.806047 | 9.941567e-50 | -8.615850e-47 |
| Msa0912470 | Msa1129010 | -0.819067 | 1.411078e-52 | -8.615850e-47 |
| Msa0968320 | Msa1129010 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129010 | MtrunA17_Chr7g0273571 | 84.211 | 152 | 3 | 1 | 1 | 131 | 1 | 152 | 2.02e-84 | 243 |
| Msa1129010 | MtrunA17_Chr6g0461291 | 63.576 | 151 | 33 | 2 | 2 | 130 | 8 | 158 | 4.38e-57 | 174 |
| Msa1129010 | MtrunA17_Chr4g0028001 | 59.859 | 142 | 35 | 3 | 9 | 129 | 63 | 203 | 2.12e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1129010 | AT1G08830.2 | 71.711 | 152 | 22 | 1 | 1 | 131 | 1 | 152 | 1.92e-69 | 206 |
| Msa1129010 | AT1G08830.1 | 71.711 | 152 | 22 | 1 | 1 | 131 | 1 | 152 | 1.92e-69 | 206 |
| Msa1129010 | AT5G18100.1 | 58.000 | 150 | 42 | 1 | 2 | 130 | 8 | 157 | 6.72e-55 | 169 |
| Msa1129010 | AT2G28190.1 | 58.784 | 148 | 40 | 1 | 3 | 129 | 66 | 213 | 4.18e-54 | 169 |
| Msa1129010 | AT5G18100.2 | 53.543 | 127 | 38 | 1 | 2 | 107 | 8 | 134 | 2.08e-40 | 132 |
Find 78 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 7_3:+80901597 | Msa1129010:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7_3:+80900373 | Msa1129010:CDS |
| TCCTTCTCTTCTCTTCTCTC+TGG | 0.232034 | 7_3:+80898825 | Msa1129010:five_prime_UTR |
| GGCTTGCAAGGATGAACTTC+TGG | 0.248016 | 7_3:+80901618 | Msa1129010:exon |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7_3:+80899993 | Msa1129010:CDS |
| CCTTCTCTTCTCTTCTCTCT+GGG | 0.296676 | 7_3:+80898826 | Msa1129010:five_prime_UTR |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7_3:+80899951 | Msa1129010:CDS |
| CAGTTTGTGGTATGATCTTA+AGG | 0.306952 | 7_3:+80901841 | Msa1129010:three_prime_UTR |
| ATCCCATCTCTTGCTTGTTT+AGG | 0.310427 | 7_3:+80901701 | Msa1129010:three_prime_UTR |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7_3:-80899958 | None:intergenic |
| GAATAGATGAGGTGGCAGTT+GGG | 0.368096 | 7_3:+80898672 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7_3:-80900337 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7_3:+80899770 | Msa1129010:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7_3:+80899972 | Msa1129010:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7_3:+80899992 | Msa1129010:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7_3:-80900361 | None:intergenic |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7_3:+80900023 | Msa1129010:CDS |
| GTATTATAATCCTTTGTTAA+CGG | 0.459249 | 7_3:-80901905 | None:intergenic |
| TTCTCTTCTCTTCTCTCTGG+GGG | 0.461568 | 7_3:+80898828 | Msa1129010:five_prime_UTR |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7_3:+80900322 | Msa1129010:intron |
| GCTTGCAAGGATGAACTTCT+GGG | 0.462070 | 7_3:+80901619 | Msa1129010:exon |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7_3:-80900940 | None:intergenic |
| TGAATAGATGAGGTGGCAGT+TGG | 0.465709 | 7_3:+80898671 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7_3:+80900931 | Msa1129010:CDS |
| TTCTTGTGTCGAAATCTCAA+TGG | 0.471476 | 7_3:+80901755 | Msa1129010:three_prime_UTR |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7_3:+80899821 | Msa1129010:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7_3:+80900932 | Msa1129010:CDS |
| AATAGATGAGGTGGCAGTTG+GGG | 0.478487 | 7_3:+80898673 | None:intergenic |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7_3:+80900397 | Msa1129010:CDS |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7_3:+80899811 | Msa1129010:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7_3:-80900021 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7_3:+80899963 | Msa1129010:CDS |
| AACAAGCATGACAGTAACTT+CGG | 0.498758 | 7_3:-80901816 | None:intergenic |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7_3:-80899945 | None:intergenic |
| TTATGGACGGCATTGATGAC+GGG | 0.506422 | 7_3:-80901937 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7_3:+80901259 | Msa1129010:CDS |
| CCCAGAGAGAAGAGAAGAGA+AGG | 0.518902 | 7_3:-80898826 | None:intergenic |
| GCTCTCGCATATAAACAAAC+AGG | 0.523870 | 7_3:+80898742 | Msa1129010:five_prime_UTR |
| CTTCTCTTCTCTTCTCTCTG+GGG | 0.526123 | 7_3:+80898827 | Msa1129010:five_prime_UTR |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7_3:-80899981 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7_3:-80899989 | None:intergenic |
| GTTTGTTTATATGCGAGAGC+AGG | 0.531024 | 7_3:-80898739 | None:intergenic |
| AGACCTAAACAAGCAAGAGA+TGG | 0.533467 | 7_3:-80901704 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7_3:+80901268 | Msa1129010:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7_3:+80899939 | Msa1129010:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 7_3:+80901606 | Msa1129010:intron |
| ACTTCTGGGATACATGAAGT+TGG | 0.540567 | 7_3:+80901633 | Msa1129010:three_prime_UTR |
| GACCTAAACAAGCAAGAGAT+GGG | 0.545557 | 7_3:-80901703 | None:intergenic |
| CTAGAAGTGAGTGAGTAAGT+AGG | 0.545822 | 7_3:-80898797 | None:intergenic |
| GTTATGGACGGCATTGATGA+CGG | 0.547132 | 7_3:-80901938 | None:intergenic |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7_3:+80899791 | Msa1129010:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7_3:+80900327 | Msa1129010:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7_3:+80899814 | Msa1129010:CDS |
| ACAAGCATGACAGTAACTTC+GGG | 0.558628 | 7_3:-80901815 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7_3:+80900388 | Msa1129010:CDS |
| ATATCATCTTCCGTTAACAA+AGG | 0.584801 | 7_3:+80901895 | Msa1129010:three_prime_UTR |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7_3:+80899760 | Msa1129010:exon |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7_3:+80900364 | Msa1129010:CDS |
| CTTCAGATCACATTGAACAA+TGG | 0.604884 | 7_3:+80899748 | Msa1129010:intron |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7_3:+80899754 | Msa1129010:exon |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7_3:+80900937 | Msa1129010:CDS |
| ATAGATGAGGTGGCAGTTGG+GGG | 0.613122 | 7_3:+80898674 | None:intergenic |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7_3:+80899994 | Msa1129010:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7_3:+80900334 | Msa1129010:CDS |
| AATGGCTATATGACTGCACT+TGG | 0.629665 | 7_3:+80901773 | Msa1129010:three_prime_UTR |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7_3:-80899986 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7_3:+80899815 | Msa1129010:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7_3:-80900360 | None:intergenic |
| GGTGAATGTAAGAACAGTAG+AGG | 0.641475 | 7_3:+80898699 | Msa1129010:five_prime_UTR |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7_3:-80900935 | None:intergenic |
| ATGTAAGAACAGTAGAGGCG+TGG | 0.643360 | 7_3:+80898704 | Msa1129010:five_prime_UTR |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7_3:-80900325 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7_3:+80899995 | Msa1129010:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7_3:+80900345 | Msa1129010:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7_3:+80901271 | Msa1129010:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7_3:-80899949 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7_3:-80900359 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7_3:+80901286 | Msa1129010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAACAATTAAATTTT+TGG | - | chr7_3:80899068-80899087 | None:intergenic | 10.0% |
| !!! | AATTGAACAAAATTTTATTA+TGG | + | chr7_3:80899555-80899574 | Msa1129010:intron | 10.0% |
| !! | AAAAATGAAGAAATTAAACT+AGG | - | chr7_3:80898888-80898907 | None:intergenic | 15.0% |
| !!! | TTGTAAAAATAAGTTGAAAA+CGG | - | chr7_3:80899251-80899270 | None:intergenic | 15.0% |
| !! | AATCAAATTCCTTATATTAT+TGG | + | chr7_3:80899509-80899528 | Msa1129010:intron | 15.0% |
| !!! | TATGTTTTGTAAGATTTTTT+TGG | + | chr7_3:80899590-80899609 | Msa1129010:intron | 15.0% |
| !!! | AAATAACATTTGTTAGATAA+AGG | - | chr7_3:80899691-80899710 | None:intergenic | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | + | chr7_3:80900175-80900194 | Msa1129010:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | - | chr7_3:80900181-80900200 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | + | chr7_3:80900503-80900522 | Msa1129010:intron | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | + | chr7_3:80900613-80900632 | Msa1129010:intron | 15.0% |
| !! | ATTTAACTGCAAGTAAAATA+TGG | - | chr7_3:80899489-80899508 | None:intergenic | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | + | chr7_3:80900068-80900087 | Msa1129010:intron | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | - | chr7_3:80900263-80900282 | None:intergenic | 20.0% |
| !! | CACAAAAAAATAAAATCAAG+TGG | - | chr7_3:80900459-80900478 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTTTTTGTGAC+CGG | + | chr7_3:80900461-80900480 | Msa1129010:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | + | chr7_3:80900612-80900631 | Msa1129010:intron | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr7_3:80900677-80900696 | None:intergenic | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr7_3:80900678-80900697 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | - | chr7_3:80900818-80900837 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | - | chr7_3:80900819-80900838 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | + | chr7_3:80900818-80900837 | Msa1129010:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | - | chr7_3:80901551-80901570 | None:intergenic | 20.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | - | chr7_3:80901552-80901571 | None:intergenic | 20.0% |
| !! | GTATTATAATCCTTTGTTAA+CGG | - | chr7_3:80901908-80901927 | None:intergenic | 20.0% |
| !! | ATTTTTCTTTAACGTGTTCT+CGG | + | chr7_3:80898902-80898921 | Msa1129010:intron | 25.0% |
| ! | TTATAAGCTATAAATCAAGC+TGG | + | chr7_3:80899383-80899402 | Msa1129010:intron | 25.0% |
| ! | TATAAGCTATAAATCAAGCT+GGG | + | chr7_3:80899384-80899403 | Msa1129010:intron | 25.0% |
| !! | TAACTTAACAGTGTTGAATT+TGG | + | chr7_3:80899440-80899459 | Msa1129010:intron | 25.0% |
| ! | TGCAAATTGCCAATAATATA+AGG | - | chr7_3:80899521-80899540 | None:intergenic | 25.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | - | chr7_3:80900055-80900074 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | + | chr7_3:80900301-80900320 | Msa1129010:intron | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | + | chr7_3:80900433-80900452 | Msa1129010:intron | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | - | chr7_3:80900483-80900502 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | + | chr7_3:80901218-80901237 | Msa1129010:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | + | chr7_3:80901340-80901359 | Msa1129010:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | - | chr7_3:80901379-80901398 | None:intergenic | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | - | chr7_3:80901466-80901485 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | - | chr7_3:80901527-80901546 | None:intergenic | 25.0% |
| GTTTCTCGAATAATCAAATC+AGG | - | chr7_3:80899013-80899032 | None:intergenic | 30.0% | |
| TGTTGAATTGAATCTATACC+TGG | + | chr7_3:80899114-80899133 | Msa1129010:intron | 30.0% | |
| GTTGAATTGAATCTATACCT+GGG | + | chr7_3:80899115-80899134 | Msa1129010:intron | 30.0% | |
| GACAGTACATAAACTCAAAT+AGG | - | chr7_3:80899182-80899201 | None:intergenic | 30.0% | |
| TTTATGTACTGTCTGTTTCA+GGG | + | chr7_3:80899189-80899208 | Msa1129010:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr7_3:80899279-80899298 | None:intergenic | 30.0% |
| AGTTGATCACTAGATAGATT+CGG | - | chr7_3:80899421-80899440 | None:intergenic | 30.0% | |
| GCAGACTATTCAAAACAAAT+TGG | - | chr7_3:80899652-80899671 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | - | chr7_3:80899870-80899889 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | - | chr7_3:80899912-80899931 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | - | chr7_3:80900127-80900146 | None:intergenic | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | - | chr7_3:80900128-80900147 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | + | chr7_3:80900132-80900151 | Msa1129010:intron | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | - | chr7_3:80900328-80900347 | None:intergenic | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | + | chr7_3:80900327-80900346 | Msa1129010:CDS | 30.0% | |
| AAAAATAAAATCAAGTGGCC+TGG | - | chr7_3:80900454-80900473 | None:intergenic | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | + | chr7_3:80900513-80900532 | Msa1129010:intron | 30.0% |
| GATTAAAAGTTGAAACTCTC+AGG | - | chr7_3:80900844-80900863 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | + | chr7_3:80900990-80901009 | Msa1129010:intron | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | + | chr7_3:80900991-80901010 | Msa1129010:intron | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | - | chr7_3:80900999-80901018 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | - | chr7_3:80901000-80901019 | None:intergenic | 30.0% | |
| !! | TTGGAAACACTTTTTGTGTT+TGG | + | chr7_3:80901030-80901049 | Msa1129010:intron | 30.0% |
| ATTTGTGACGATCACTTTAT+AGG | - | chr7_3:80901084-80901103 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | + | chr7_3:80901393-80901412 | Msa1129010:intron | 30.0% | |
| AATAATACCTACAACAAACG+GGG | - | chr7_3:80901598-80901617 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | - | chr7_3:80901599-80901618 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | - | chr7_3:80901600-80901619 | None:intergenic | 30.0% | |
| ATATCATCTTCCGTTAACAA+AGG | + | chr7_3:80901895-80901914 | Msa1129010:three_prime_UTR | 30.0% | |
| TTGAATCTATACCTGGGATT+TGG | + | chr7_3:80899121-80899140 | Msa1129010:intron | 35.0% | |
| CAAACAGATACTAACTGACT+CGG | - | chr7_3:80899153-80899172 | None:intergenic | 35.0% | |
| GTTTATGTACTGTCTGTTTC+AGG | + | chr7_3:80899188-80899207 | Msa1129010:intron | 35.0% | |
| ATCTGAAGAACAAAACAGCT+AGG | - | chr7_3:80899736-80899755 | None:intergenic | 35.0% | |
| CTTCAGATCACATTGAACAA+TGG | + | chr7_3:80899748-80899767 | Msa1129010:intron | 35.0% | |
| ATCACATTGAACAATGGTGA+AGG | + | chr7_3:80899754-80899773 | Msa1129010:exon | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | - | chr7_3:80899961-80899980 | None:intergenic | 35.0% | |
| AACACAATTCATTCTCGACT+TGG | - | chr7_3:80900218-80900237 | None:intergenic | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | + | chr7_3:80900388-80900407 | Msa1129010:CDS | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | - | chr7_3:80900567-80900586 | None:intergenic | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | + | chr7_3:80900662-80900681 | Msa1129010:intron | 35.0% | |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr7_3:80900776-80900795 | Msa1129010:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr7_3:80900777-80900796 | Msa1129010:intron | 35.0% |
| ACCAAACTCAATCATAGGAA+GGG | + | chr7_3:80900897-80900916 | Msa1129010:intron | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | + | chr7_3:80901011-80901030 | Msa1129010:intron | 35.0% |
| AAGTGATCGTCACAAATTCA+AGG | + | chr7_3:80901087-80901106 | Msa1129010:intron | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | + | chr7_3:80901088-80901107 | Msa1129010:intron | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | - | chr7_3:80901143-80901162 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | + | chr7_3:80901353-80901372 | Msa1129010:intron | 35.0% | |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | + | chr7_3:80901597-80901616 | Msa1129010:intron | 35.0% |
| TTCTTGTGTCGAAATCTCAA+TGG | + | chr7_3:80901755-80901774 | Msa1129010:three_prime_UTR | 35.0% | |
| AACAAGCATGACAGTAACTT+CGG | - | chr7_3:80901819-80901838 | None:intergenic | 35.0% | |
| !! | TCATGCTTGTTTTCAGTTTG+TGG | + | chr7_3:80901828-80901847 | Msa1129010:three_prime_UTR | 35.0% |
| CAGTTTGTGGTATGATCTTA+AGG | + | chr7_3:80901841-80901860 | Msa1129010:three_prime_UTR | 35.0% | |
| GGTGAATGTAAGAACAGTAG+AGG | + | chr7_3:80898699-80898718 | Msa1129010:five_prime_UTR | 40.0% | |
| GTTTGTTTATATGCGAGAGC+AGG | - | chr7_3:80898742-80898761 | None:intergenic | 40.0% | |
| GCTCTCGCATATAAACAAAC+AGG | + | chr7_3:80898742-80898761 | Msa1129010:five_prime_UTR | 40.0% | |
| CTAGAAGTGAGTGAGTAAGT+AGG | - | chr7_3:80898800-80898819 | None:intergenic | 40.0% | |
| GAGAAACCTAAGCTATCTTG+TGG | + | chr7_3:80899026-80899045 | Msa1129010:intron | 40.0% | |
| ACAGATCCACAAGATAGCTT+AGG | - | chr7_3:80899035-80899054 | None:intergenic | 40.0% | |
| CGAGTCAGTTAGTATCTGTT+TGG | + | chr7_3:80899151-80899170 | Msa1129010:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | + | chr7_3:80899791-80899810 | Msa1129010:CDS | 40.0% | |
| ! | TGGTACTATTAGCTTCTCTC+AGG | + | chr7_3:80899811-80899830 | Msa1129010:CDS | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | + | chr7_3:80899814-80899833 | Msa1129010:CDS | 40.0% |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | + | chr7_3:80899815-80899834 | Msa1129010:CDS | 40.0% |
| TGGTAAGTTTCAACAGCCTT+TGG | + | chr7_3:80899841-80899860 | Msa1129010:intron | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | + | chr7_3:80899921-80899940 | Msa1129010:intron | 40.0% | |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | + | chr7_3:80899963-80899982 | Msa1129010:CDS | 40.0% |
| AGTTGACATGCAACCATTTG+TGG | - | chr7_3:80900024-80900043 | None:intergenic | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | + | chr7_3:80900023-80900042 | Msa1129010:CDS | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | + | chr7_3:80900035-80900054 | Msa1129010:intron | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | + | chr7_3:80900322-80900341 | Msa1129010:intron | 40.0% | |
| AATCCTAATGGTAAGGAGCA+CGG | + | chr7_3:80900334-80900353 | Msa1129010:CDS | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | + | chr7_3:80900373-80900392 | Msa1129010:CDS | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | + | chr7_3:80900559-80900578 | Msa1129010:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+TGG | + | chr7_3:80900636-80900655 | Msa1129010:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTT+GGG | + | chr7_3:80900637-80900656 | Msa1129010:intron | 40.0% |
| TTGCTTAACATGTGCCCAAA+GGG | - | chr7_3:80900654-80900673 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7_3:80900794-80900813 | None:intergenic | 40.0% |
| ACTGGACCAAACTCAATCAT+AGG | + | chr7_3:80900892-80900911 | Msa1129010:intron | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | + | chr7_3:80900896-80900915 | Msa1129010:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | - | chr7_3:80900938-80900957 | None:intergenic | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | + | chr7_3:80901374-80901393 | Msa1129010:intron | 40.0% | |
| ! | GTGAGAAGTTCTGACAATCA+TGG | + | chr7_3:80901436-80901455 | Msa1129010:intron | 40.0% |
| TTGTCCTGTTACTGTCTCAT+AGG | + | chr7_3:80901487-80901506 | Msa1129010:intron | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | - | chr7_3:80901494-80901513 | None:intergenic | 40.0% | |
| !! | GTAGGTATTATTGGCTTGCA+AGG | + | chr7_3:80901606-80901625 | Msa1129010:intron | 40.0% |
| !! | ACTTCTGGGATACATGAAGT+TGG | + | chr7_3:80901633-80901652 | Msa1129010:three_prime_UTR | 40.0% |
| ATCCCATCTCTTGCTTGTTT+AGG | + | chr7_3:80901701-80901720 | Msa1129010:three_prime_UTR | 40.0% | |
| GACCTAAACAAGCAAGAGAT+GGG | - | chr7_3:80901706-80901725 | None:intergenic | 40.0% | |
| AGACCTAAACAAGCAAGAGA+TGG | - | chr7_3:80901707-80901726 | None:intergenic | 40.0% | |
| AATGGCTATATGACTGCACT+TGG | + | chr7_3:80901773-80901792 | Msa1129010:three_prime_UTR | 40.0% | |
| ACAAGCATGACAGTAACTTC+GGG | - | chr7_3:80901818-80901837 | None:intergenic | 40.0% | |
| ATGTAAGAACAGTAGAGGCG+TGG | + | chr7_3:80898704-80898723 | Msa1129010:five_prime_UTR | 45.0% | |
| TCCTTCTCTTCTCTTCTCTC+TGG | + | chr7_3:80898825-80898844 | Msa1129010:five_prime_UTR | 45.0% | |
| CCTTCTCTTCTCTTCTCTCT+GGG | + | chr7_3:80898826-80898845 | Msa1129010:five_prime_UTR | 45.0% | |
| CTTCTCTTCTCTTCTCTCTG+GGG | + | chr7_3:80898827-80898846 | Msa1129010:five_prime_UTR | 45.0% | |
| TTCTCTTCTCTTCTCTCTGG+GGG | + | chr7_3:80898828-80898847 | Msa1129010:five_prime_UTR | 45.0% | |
| GATTGATGCATGCATACCTC+AGG | - | chr7_3:80898857-80898876 | None:intergenic | 45.0% | |
| TTGAACAATGGTGAAGGCTG+TGG | + | chr7_3:80899760-80899779 | Msa1129010:exon | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | - | chr7_3:80899952-80899971 | None:intergenic | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | + | chr7_3:80899951-80899970 | Msa1129010:CDS | 45.0% | |
| GGCACTATTGAGTATGAGTC+AGG | + | chr7_3:80900089-80900108 | Msa1129010:intron | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | - | chr7_3:80900362-80900381 | None:intergenic | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | - | chr7_3:80900363-80900382 | None:intergenic | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | + | chr7_3:80900527-80900546 | Msa1129010:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | - | chr7_3:80900532-80900551 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | - | chr7_3:80900555-80900574 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCAA+AGG | - | chr7_3:80900655-80900674 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | - | chr7_3:80900888-80900907 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | - | chr7_3:80900889-80900908 | None:intergenic | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | - | chr7_3:80900901-80900920 | None:intergenic | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | + | chr7_3:80900932-80900951 | Msa1129010:CDS | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | + | chr7_3:80900937-80900956 | Msa1129010:CDS | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | - | chr7_3:80900943-80900962 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | + | chr7_3:80901232-80901251 | Msa1129010:intron | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | + | chr7_3:80901259-80901278 | Msa1129010:CDS | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | + | chr7_3:80901268-80901287 | Msa1129010:CDS | 45.0% | |
| AAGACTACTGGAAATGCTGG+TGG | + | chr7_3:80901271-80901290 | Msa1129010:CDS | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | + | chr7_3:80901588-80901607 | Msa1129010:intron | 45.0% |
| GCTTGCAAGGATGAACTTCT+GGG | + | chr7_3:80901619-80901638 | Msa1129010:exon | 45.0% | |
| CCCAGAGAGAAGAGAAGAGA+AGG | - | chr7_3:80898829-80898848 | None:intergenic | 50.0% | |
| CTCGGATTCTTCCAAATCCC+AGG | - | chr7_3:80899135-80899154 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | + | chr7_3:80899821-80899840 | Msa1129010:CDS | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | - | chr7_3:80899860-80899879 | None:intergenic | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | - | chr7_3:80899948-80899967 | None:intergenic | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | - | chr7_3:80899989-80900008 | None:intergenic | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | - | chr7_3:80899992-80900011 | None:intergenic | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | + | chr7_3:80899992-80900011 | Msa1129010:CDS | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | + | chr7_3:80899993-80900012 | Msa1129010:CDS | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | + | chr7_3:80899994-80900013 | Msa1129010:CDS | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | + | chr7_3:80899995-80900014 | Msa1129010:CDS | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | - | chr7_3:80900364-80900383 | None:intergenic | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | + | chr7_3:80900364-80900383 | Msa1129010:CDS | 50.0% | |
| AATGTCACTGTCGGCGATGA+TGG | + | chr7_3:80900397-80900416 | Msa1129010:CDS | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | + | chr7_3:80900874-80900893 | Msa1129010:intron | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | + | chr7_3:80900931-80900950 | Msa1129010:CDS | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | + | chr7_3:80901235-80901254 | Msa1129010:intron | 50.0% | |
| GGCTTGCAAGGATGAACTTC+TGG | + | chr7_3:80901618-80901637 | Msa1129010:exon | 50.0% | |
| ! | TTCTCTCTGGGGGTTTCCTG+AGG | + | chr7_3:80898838-80898857 | Msa1129010:five_prime_UTR | 55.0% |
| GTGAAGGCTGTGGCAGTTCT+TGG | + | chr7_3:80899770-80899789 | Msa1129010:CDS | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | - | chr7_3:80899984-80900003 | None:intergenic | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | - | chr7_3:80900001-80900020 | None:intergenic | 55.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | - | chr7_3:80900012-80900031 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | - | chr7_3:80900340-80900359 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | + | chr7_3:80900402-80900421 | Msa1129010:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | + | chr7_3:80899939-80899958 | Msa1129010:intron | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | + | chr7_3:80899972-80899991 | Msa1129010:CDS | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | - | chr7_3:80900007-80900026 | None:intergenic | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | + | chr7_3:80900008-80900027 | Msa1129010:CDS | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | + | chr7_3:80901286-80901305 | Msa1129010:CDS | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | + | chr7_3:80900345-80900364 | Msa1129010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80898683 | 80901952 | 80898683 | ID=Msa1129010;Name=Msa1129010 |
| chr7_3 | mRNA | 80898683 | 80901952 | 80898683 | ID=Msa1129010-mRNA-1;Parent=Msa1129010;Name=Msa1129010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=190|0.83|0.85|1|0.83|0.71|7|320|131 |
| chr7_3 | exon | 80898683 | 80898859 | 80898683 | ID=Msa1129010-mRNA-1:exon:23357;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80899754 | 80899842 | 80899754 | ID=Msa1129010-mRNA-1:exon:23358;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80899943 | 80900044 | 80899943 | ID=Msa1129010-mRNA-1:exon:23359;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80900323 | 80900418 | 80900323 | ID=Msa1129010-mRNA-1:exon:23360;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80900914 | 80900958 | 80900914 | ID=Msa1129010-mRNA-1:exon:23361;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80901254 | 80901307 | 80901254 | ID=Msa1129010-mRNA-1:exon:23362;Parent=Msa1129010-mRNA-1 |
| chr7_3 | exon | 80901610 | 80901952 | 80901610 | ID=Msa1129010-mRNA-1:exon:23363;Parent=Msa1129010-mRNA-1 |
| chr7_3 | five_prime_UTR | 80898683 | 80898859 | 80898683 | ID=Msa1129010-mRNA-1:five_prime_utr;Parent=Msa1129010-mRNA-1 |
| chr7_3 | five_prime_UTR | 80899754 | 80899766 | 80899754 | ID=Msa1129010-mRNA-1:five_prime_utr;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80899767 | 80899842 | 80899767 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80899943 | 80900044 | 80899943 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80900323 | 80900418 | 80900323 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80900914 | 80900958 | 80900914 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80901254 | 80901307 | 80901254 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | CDS | 80901610 | 80901632 | 80901610 | ID=Msa1129010-mRNA-1:cds;Parent=Msa1129010-mRNA-1 |
| chr7_3 | three_prime_UTR | 80901633 | 80901952 | 80901633 | ID=Msa1129010-mRNA-1:three_prime_utr;Parent=Msa1129010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
