Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095850 | sp|Q8RWR1|JMJ30_ARATH | 31.136 | 273 | 130 | 11 | 27 | 294 | 207 | 426 | 1.34e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095850 | G7ICR6 | 94.259 | 540 | 26 | 3 | 1 | 536 | 1 | 539 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028330 | Msa0095850 | 0.827810 | 1.273925e-54 | -8.615850e-47 |
| Msa0076180 | Msa0095850 | 0.898600 | 4.527090e-77 | -8.615850e-47 |
| Msa0095850 | Msa0168580 | 0.809995 | 1.436527e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095850 | MtrunA17_Chr1g0185111 | 94.259 | 540 | 26 | 3 | 1 | 536 | 1 | 539 | 0.0 | 1041 |
| Msa0095850 | MtrunA17_Chr4g0033081 | 39.610 | 154 | 77 | 6 | 139 | 288 | 263 | 404 | 4.66e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095850 | AT5G19840.1 | 53.160 | 538 | 215 | 8 | 7 | 528 | 10 | 526 | 0.0 | 543 |
| Msa0095850 | AT5G19840.2 | 50.093 | 539 | 214 | 9 | 7 | 514 | 10 | 524 | 1.84e-171 | 496 |
| Msa0095850 | AT3G20810.1 | 31.136 | 273 | 130 | 11 | 27 | 294 | 196 | 415 | 1.00e-22 | 101 |
| Msa0095850 | AT3G20810.2 | 31.136 | 273 | 130 | 11 | 27 | 294 | 207 | 426 | 1.36e-22 | 100 |
| Msa0095850 | AT3G20810.3 | 31.496 | 254 | 116 | 11 | 27 | 275 | 196 | 396 | 1.34e-18 | 88.6 |
Find 158 sgRNAs with CRISPR-Local
Find 601 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGAGCTTTCTCTTTA+TGG | 0.052884 | 1_3:+1227197 | Msa0095850:CDS |
| ATTGGGAGCTTCTTTATTTC+AGG | 0.161998 | 1_3:-1236176 | None:intergenic |
| GGACCAGCAACTGCTAAAAT+TGG | 0.210930 | 1_3:+1231930 | Msa0095850:intron |
| GTTGAAAGGAATGGATTTAA+AGG | 0.248023 | 1_3:+1232161 | Msa0095850:CDS |
| TTACTTGCTCTTCCATTCTT+AGG | 0.256470 | 1_3:-1231988 | None:intergenic |
| TTTGACATTCCAGAGAATTT+TGG | 0.260261 | 1_3:-1232391 | None:intergenic |
| TATTTCAGGAAAATATTAAA+TGG | 0.260967 | 1_3:-1236162 | None:intergenic |
| TCCAAGGGCAGAAGACTTAA+TGG | 0.263974 | 1_3:+1229304 | Msa0095850:CDS |
| CTAGTTTAGCTAGTTCAAAT+TGG | 0.270035 | 1_3:-1236231 | None:intergenic |
| CTCTACCCAATGCCTATCTA+TGG | 0.271872 | 1_3:+1229045 | Msa0095850:CDS |
| CTAGTTTAGCTAGTTCAAAT+TGG | 0.291464 | 1_3:-1236194 | None:intergenic |
| GCTTCATGAACTCGTGTCTT+TGG | 0.293768 | 1_3:+1232242 | Msa0095850:CDS |
| TTACTATTGCTATTAACTTT+TGG | 0.296412 | 1_3:+1230980 | Msa0095850:CDS |
| AGAGAAAGCTCTCCAAGTTT+TGG | 0.315791 | 1_3:-1227191 | None:intergenic |
| CCGTCTGAATGTCTTCCCTT+AGG | 0.329877 | 1_3:-1228363 | None:intergenic |
| CAACTTCCCAAGAACTTTAG+AGG | 0.336480 | 1_3:+1233175 | Msa0095850:CDS |
| GCAGAAGACTTAATGGAGTT+TGG | 0.345127 | 1_3:+1229311 | Msa0095850:CDS |
| CCTTGGATAAATTGAGTAAT+CGG | 0.353609 | 1_3:-1229288 | None:intergenic |
| CTTGTACATTATTGATTAGT+TGG | 0.356663 | 1_3:+1236284 | Msa0095850:three_prime_UTR |
| TGCGCTAAATAAATTTGTTC+GGG | 0.359336 | 1_3:-1228050 | None:intergenic |
| GTTTGGACAAAAGGTTGTTC+TGG | 0.361014 | 1_3:+1229328 | Msa0095850:CDS |
| ACGAGAGCCTCTAAAGTTCT+TGG | 0.362653 | 1_3:-1233182 | None:intergenic |
| AGTGAACTTTATGAATGAAT+TGG | 0.363017 | 1_3:+1235899 | Msa0095850:three_prime_UTR |
| TTTGATCGTTTGAAGTTTGA+AGG | 0.368858 | 1_3:-1226959 | None:intergenic |
| CTTAATGGAGTTTGGACAAA+AGG | 0.372824 | 1_3:+1229319 | Msa0095850:CDS |
| AAATCAAGGAAAGTAGAAAA+TGG | 0.379020 | 1_3:-1227909 | None:intergenic |
| AACTGTCTTCTATAAATTTG+TGG | 0.379402 | 1_3:+1228530 | Msa0095850:CDS |
| CTGCGCTAAATAAATTTGTT+CGG | 0.380933 | 1_3:-1228051 | None:intergenic |
| TGCATGTACTATCACCAGTT+GGG | 0.384920 | 1_3:+1233207 | Msa0095850:CDS |
| TCCATTAAGTCTTCTGCCCT+TGG | 0.385486 | 1_3:-1229305 | None:intergenic |
| ATATGCATCAATTTATTCTT+CGG | 0.391730 | 1_3:-1235937 | None:intergenic |
| AATGTATTGGACAAATTTGT+GGG | 0.394832 | 1_3:+1235832 | Msa0095850:CDS |
| CGTCTGAATGTCTTCCCTTA+GGG | 0.396196 | 1_3:-1228362 | None:intergenic |
| AACAGTTGTTAGTGTTGTAT+AGG | 0.398057 | 1_3:+1236044 | Msa0095850:three_prime_UTR |
| TCGTAAGGAGAAAGTTCAAT+TGG | 0.399065 | 1_3:+1228336 | Msa0095850:CDS |
| TGGGAAGTTCTTCGTATCTT+CGG | 0.400011 | 1_3:-1227004 | None:intergenic |
| AACTTCAAACGATCAAAGTA+TGG | 0.400916 | 1_3:+1226965 | Msa0095850:exon |
| TATAGACCTTACCATCCTTC+AGG | 0.402206 | 1_3:-1229374 | None:intergenic |
| GTGATCTTGGAAGTCATCAT+AGG | 0.402862 | 1_3:+1227314 | Msa0095850:CDS |
| CGATGGTTTAGATTACTTGC+AGG | 0.403301 | 1_3:+1227231 | Msa0095850:CDS |
| CGATGTATCATGACGATTAA+CGG | 0.407497 | 1_3:-1226786 | None:intergenic |
| AAATGTATTGGACAAATTTG+TGG | 0.410927 | 1_3:+1235831 | Msa0095850:CDS |
| ATCTTCTGTGGTGGAGGCTA+TGG | 0.410951 | 1_3:+1227264 | Msa0095850:CDS |
| AAAGGAGAAAAGACTTAAAG+AGG | 0.411316 | 1_3:+1232179 | Msa0095850:CDS |
| GACCAGCAACTGCTAAAATT+GGG | 0.413196 | 1_3:+1231931 | Msa0095850:CDS |
| TAGTTTAGCTAGTTCAAATT+GGG | 0.416275 | 1_3:-1236193 | None:intergenic |
| AACTCAGCAACAACAACATC+TGG | 0.418124 | 1_3:+1227956 | Msa0095850:CDS |
| CATATAACTTACCTTGTTTG+AGG | 0.419995 | 1_3:-1228624 | None:intergenic |
| TCCGTTTCTTACACAAATCA+AGG | 0.421905 | 1_3:-1227923 | None:intergenic |
| TTCAGTGTATCAAATACATA+GGG | 0.424971 | 1_3:-1236092 | None:intergenic |
| CTTGGATAAATTGAGTAATC+GGG | 0.430456 | 1_3:-1229287 | None:intergenic |
| TAGTTTAGCTAGTTCAAATT+GGG | 0.433414 | 1_3:-1236230 | None:intergenic |
| ATCCAGTTGCCAAAATTCTC+TGG | 0.437695 | 1_3:+1232382 | Msa0095850:CDS |
| AAACCAAAGCATTTCTTCGT+TGG | 0.439277 | 1_3:+1235963 | Msa0095850:three_prime_UTR |
| GTCTTGCATGATGGAACATA+TGG | 0.439711 | 1_3:+1231020 | Msa0095850:CDS |
| TTCTTCGGAGGTACCTTGGT+GGG | 0.440392 | 1_3:-1235922 | None:intergenic |
| TATGCGGTTGCACCAAAACT+TGG | 0.441510 | 1_3:+1227179 | Msa0095850:CDS |
| ATAAATGATTATGATCTCAT+AGG | 0.445329 | 1_3:+1232315 | Msa0095850:CDS |
| GATCCAACGAAGAAATGCTT+TGG | 0.446004 | 1_3:-1235966 | None:intergenic |
| TCAAAATGTCTTTCTTGCTA+TGG | 0.460266 | 1_3:+1232425 | Msa0095850:CDS |
| TACACGGAAATTTGATGAGA+TGG | 0.460378 | 1_3:+1233241 | Msa0095850:CDS |
| CAGTCAGATGTTGAAAGGAA+TGG | 0.465665 | 1_3:+1232152 | Msa0095850:CDS |
| CAAAAGGTTGTTCTGGAGGC+AGG | 0.466338 | 1_3:+1229335 | Msa0095850:CDS |
| AAGGAGAAAAGACTTAAAGA+GGG | 0.467339 | 1_3:+1232180 | Msa0095850:CDS |
| CGAGAGCCTCTAAAGTTCTT+GGG | 0.468427 | 1_3:-1233181 | None:intergenic |
| TCCTTGATTTGTGTAAGAAA+CGG | 0.469402 | 1_3:+1227922 | Msa0095850:CDS |
| CCATTGAGTATACCTGTGAT+TGG | 0.477258 | 1_3:-1229076 | None:intergenic |
| TTCAGGAAAATATTAAATGG+TGG | 0.477903 | 1_3:-1236159 | None:intergenic |
| AGATTTCACAAGAGAGGAGA+AGG | 0.479903 | 1_3:-1226919 | None:intergenic |
| ATTCAGTGTATCAAATACAT+AGG | 0.480443 | 1_3:-1236093 | None:intergenic |
| GTATCAAATACATAGGGGCT+AGG | 0.484996 | 1_3:-1236086 | None:intergenic |
| TCAGGAAAATATTAAATGGT+GGG | 0.485206 | 1_3:-1236158 | None:intergenic |
| GTAAGAACTTCAGCCCCAAC+TGG | 0.503073 | 1_3:-1233221 | None:intergenic |
| GCTTCCCCATAGATAGGCAT+TGG | 0.503987 | 1_3:-1229051 | None:intergenic |
| TGAAGCACCTGGACTGCAGC+AGG | 0.504273 | 1_3:-1232225 | None:intergenic |
| TTTATTCTTCGGAGGTACCT+TGG | 0.505283 | 1_3:-1235926 | None:intergenic |
| CGTAAGGAGAAAGTTCAATT+GGG | 0.506701 | 1_3:+1228337 | Msa0095850:CDS |
| CAACAGTGTTAGCGCCAGCC+AGG | 0.511294 | 1_3:+1232269 | Msa0095850:CDS |
| GCGAACACGCTTCCTAAGAA+TGG | 0.516538 | 1_3:+1231976 | Msa0095850:CDS |
| TTGACAGTGATTGTTGATCC+TGG | 0.517753 | 1_3:-1232287 | None:intergenic |
| CAGTGATTGTTGATCCTGGC+TGG | 0.519786 | 1_3:-1232283 | None:intergenic |
| CAACACAATGTCTTGCATGA+TGG | 0.520074 | 1_3:+1231011 | Msa0095850:CDS |
| CGCAGAATATTGAGACGGTA+TGG | 0.520912 | 1_3:+1231057 | Msa0095850:CDS |
| AATCTAGAATGCTCAAAGCC+AGG | 0.521753 | 1_3:+1235859 | Msa0095850:CDS |
| TTGGAAGCTTCCCCATAGAT+AGG | 0.523469 | 1_3:-1229057 | None:intergenic |
| CGAACAAATTTATTTAGCGC+AGG | 0.525937 | 1_3:+1228052 | Msa0095850:CDS |
| GAAGGAGCTATTCACACAAC+AGG | 0.526957 | 1_3:+1233456 | Msa0095850:CDS |
| TCATTGTGTTGCTTCGCAAA+CGG | 0.527120 | 1_3:+1227989 | Msa0095850:CDS |
| CTTTCTCTTTATGGAATCCA+CGG | 0.528143 | 1_3:+1227206 | Msa0095850:CDS |
| TCTACCCAATGCCTATCTAT+GGG | 0.528926 | 1_3:+1229046 | Msa0095850:CDS |
| CTGCATGTACTATCACCAGT+TGG | 0.532800 | 1_3:+1233206 | Msa0095850:CDS |
| AAGTTCAATTGGGAACCCTA+AGG | 0.532991 | 1_3:+1228347 | Msa0095850:CDS |
| ATCTAGAATGCTCAAAGCCA+GGG | 0.534129 | 1_3:+1235860 | Msa0095850:CDS |
| AGCAATGAATTCTATTCTGA+AGG | 0.535974 | 1_3:+1233432 | Msa0095850:CDS |
| GCAACTGCTAAAATTGGGGA+TGG | 0.539515 | 1_3:+1231936 | Msa0095850:CDS |
| ATGGGGAAGCTTCCAATCAC+AGG | 0.540697 | 1_3:+1229064 | Msa0095850:CDS |
| AATTGCAGTCAGATGTTGAA+AGG | 0.542508 | 1_3:+1232147 | Msa0095850:CDS |
| GCAATGAATTCTATTCTGAA+GGG | 0.548337 | 1_3:+1233433 | Msa0095850:CDS |
| TTAGCATCTCATCTGACCCC+TGG | 0.550595 | 1_3:-1235877 | None:intergenic |
| CCGATTACTCAATTTATCCA+AGG | 0.551976 | 1_3:+1229288 | Msa0095850:CDS |
| AATTTCAGATTTCACAAGAG+AGG | 0.552328 | 1_3:-1226925 | None:intergenic |
| AATCGTCACTATCTACTTGG+TGG | 0.552384 | 1_3:-1230957 | None:intergenic |
| GGTAGGATCTTCTGTGGTGG+AGG | 0.552390 | 1_3:+1227258 | Msa0095850:CDS |
| CTTCCCCATAGATAGGCATT+GGG | 0.552590 | 1_3:-1229050 | None:intergenic |
| TAAAATCGTCACTATCTACT+TGG | 0.557534 | 1_3:-1230960 | None:intergenic |
| CGTAACAGCAGCACCAACAT+TGG | 0.559634 | 1_3:-1226880 | None:intergenic |
| ATTCTTCGGAGGTACCTTGG+TGG | 0.562177 | 1_3:-1235923 | None:intergenic |
| GATGGATGAACTAACTATTG+AGG | 0.566538 | 1_3:+1233259 | Msa0095850:CDS |
| GACTGAGAGTTAATTGTCGT+GGG | 0.567210 | 1_3:+1226814 | Msa0095850:five_prime_UTR |
| TGCATCAATTTATTCTTCGG+AGG | 0.571173 | 1_3:-1235934 | None:intergenic |
| AGTTCAATTGGGAACCCTAA+GGG | 0.576376 | 1_3:+1228348 | Msa0095850:CDS |
| AACTAACTATTGAGGAAGAT+CGG | 0.577756 | 1_3:+1233267 | Msa0095850:CDS |
| GTTTAGATTACTTGCAGGCA+CGG | 0.581262 | 1_3:+1227236 | Msa0095850:CDS |
| AGGAAAGTAGAAAATGGTAG+AGG | 0.582577 | 1_3:-1227903 | None:intergenic |
| TATCAAATACATAGGGGCTA+GGG | 0.583187 | 1_3:-1236085 | None:intergenic |
| CATCATGCAAGACATTGTGT+TGG | 0.583461 | 1_3:-1231010 | None:intergenic |
| TTTAGATTACTTGCAGGCAC+GGG | 0.584855 | 1_3:+1227237 | Msa0095850:CDS |
| TGATCTTGGAAGTCATCATA+GGG | 0.587396 | 1_3:+1227315 | Msa0095850:CDS |
| GATCATGAACAGTAATCGTA+AGG | 0.587526 | 1_3:+1228321 | Msa0095850:CDS |
| TTACGATTACTGTTCATGAT+CGG | 0.587845 | 1_3:-1228319 | None:intergenic |
| TGGACAAAAGGTTGTTCTGG+AGG | 0.593855 | 1_3:+1229331 | Msa0095850:CDS |
| CCAAGATCACCATAAAAGAC+AGG | 0.594951 | 1_3:-1227301 | None:intergenic |
| GACTCGAAGTCGTTAGATGT+GGG | 0.595951 | 1_3:-1227023 | None:intergenic |
| AAACTATGCACAAAAGATTG+TGG | 0.597530 | 1_3:-1228597 | None:intergenic |
| AGACTCGAAGTCGTTAGATG+TGG | 0.598359 | 1_3:-1227024 | None:intergenic |
| CGATTACTCAATTTATCCAA+GGG | 0.598981 | 1_3:+1229289 | Msa0095850:CDS |
| GTACAAGACATAATTATACA+TGG | 0.599435 | 1_3:-1236268 | None:intergenic |
| AGGAGAAAAGACTTAAAGAG+GGG | 0.599672 | 1_3:+1232181 | Msa0095850:CDS |
| GCATGTACTATCACCAGTTG+GGG | 0.599762 | 1_3:+1233208 | Msa0095850:CDS |
| CAGGAAAATATTAAATGGTG+GGG | 0.602135 | 1_3:-1236157 | None:intergenic |
| TAGAGTGAGGGACTAGCAGA+AGG | 0.603258 | 1_3:-1229027 | None:intergenic |
| GAATTCTATTCTGAAGGGGA+AGG | 0.607819 | 1_3:+1233438 | Msa0095850:CDS |
| ATAGTTTCTGGCCTCAAACA+AGG | 0.607916 | 1_3:+1228613 | Msa0095850:CDS |
| GATTACTTGCAGGCACGGGT+AGG | 0.611307 | 1_3:+1227241 | Msa0095850:CDS |
| ACCAGCAACTGCTAAAATTG+GGG | 0.620256 | 1_3:+1231932 | Msa0095850:CDS |
| CAACTGCTAAAATTGGGGAT+GGG | 0.621871 | 1_3:+1231937 | Msa0095850:CDS |
| CAATGAATTCTATTCTGAAG+GGG | 0.626132 | 1_3:+1233434 | Msa0095850:CDS |
| TTATGGAATCCACGGAACGA+TGG | 0.627037 | 1_3:+1227214 | Msa0095850:CDS |
| TTGGATAAATTGAGTAATCG+GGG | 0.627533 | 1_3:-1229286 | None:intergenic |
| TGACTGAGAGTTAATTGTCG+TGG | 0.629947 | 1_3:+1226813 | Msa0095850:five_prime_UTR |
| GATAGGCATTGGGTAGAGTG+AGG | 0.631689 | 1_3:-1229040 | None:intergenic |
| ATTTACGCAGAATATTGAGA+CGG | 0.636021 | 1_3:+1231052 | Msa0095850:CDS |
| ATGAATGAATTGGCCCACCA+AGG | 0.636345 | 1_3:+1235909 | Msa0095850:three_prime_UTR |
| TAATCTAAACCATCGTTCCG+TGG | 0.637577 | 1_3:-1227223 | None:intergenic |
| ATAGGCATTGGGTAGAGTGA+GGG | 0.639856 | 1_3:-1229039 | None:intergenic |
| GGCACGGGTAGGATCTTCTG+TGG | 0.658645 | 1_3:+1227252 | Msa0095850:CDS |
| TCAGCAACAACAACATCTGG+AGG | 0.661278 | 1_3:+1227959 | Msa0095850:CDS |
| AGTGAGGGACTAGCAGAAGG+AGG | 0.665357 | 1_3:-1229024 | None:intergenic |
| TTGGGGCTGAAGTTCTTACA+CGG | 0.669048 | 1_3:+1233225 | Msa0095850:CDS |
| CTACCCAATGCCTATCTATG+GGG | 0.674740 | 1_3:+1229047 | Msa0095850:CDS |
| ACGGGTAGGATCTTCTGTGG+TGG | 0.683705 | 1_3:+1227255 | Msa0095850:CDS |
| TCTAGAATGCTCAAAGCCAG+GGG | 0.685468 | 1_3:+1235861 | Msa0095850:CDS |
| ATGCACAAAAGATTGTGGTG+TGG | 0.710216 | 1_3:-1228592 | None:intergenic |
| TCAGTGTATCAAATACATAG+GGG | 0.710953 | 1_3:-1236091 | None:intergenic |
| CCTAAGGGAAGACATTCAGA+CGG | 0.717846 | 1_3:+1228363 | Msa0095850:CDS |
| TTGCAGGAATAGATTCTACG+AGG | 0.728407 | 1_3:+1233378 | Msa0095850:intron |
| TGTATCATGACGATTAACGG+TGG | 0.755390 | 1_3:-1226783 | None:intergenic |
| ACTGAGAGTTAATTGTCGTG+GGG | 0.760854 | 1_3:+1226815 | Msa0095850:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAGTACTAATAT+TGG | - | chr1_3:1228145-1228164 | None:intergenic | 10.0% |
| !! | CATTAAATAAATTAAAACAT+CGG | - | chr1_3:1228790-1228809 | None:intergenic | 10.0% |
| !!! | TATTATTTTTTCATTTGTAT+TGG | + | chr1_3:1231284-1231303 | Msa0095850:intron | 10.0% |
| !!! | TTATGATTTTTTTTTTTAAG+AGG | + | chr1_3:1232530-1232549 | Msa0095850:intron | 10.0% |
| !! | AAATAATCATAATACTTAAA+TGG | - | chr1_3:1233794-1233813 | None:intergenic | 10.0% |
| !!! | ATTTTACATATTAAAAAAGT+TGG | + | chr1_3:1236316-1236335 | Msa0095850:three_prime_UTR | 10.0% |
| !!! | TTTTACATATTAAAAAAGTT+GGG | + | chr1_3:1236317-1236336 | Msa0095850:three_prime_UTR | 10.0% |
| !! | TAGAAATAGATTATACATAA+AGG | - | chr1_3:1227656-1227675 | None:intergenic | 15.0% |
| !! | AAATGAAAAAATAATAGTGT+AGG | - | chr1_3:1231280-1231299 | None:intergenic | 15.0% |
| !! | ATCTATTAAGTTTAGTAAAT+TGG | - | chr1_3:1233970-1233989 | None:intergenic | 15.0% |
| !! | TTATTATTCCAAAAATCTAT+TGG | - | chr1_3:1234914-1234933 | None:intergenic | 15.0% |
| !! | TAATAACATTTAATGTAGAT+AGG | + | chr1_3:1234928-1234947 | Msa0095850:intron | 15.0% |
| !!! | AAATAAAAAAACAGTTTGTT+TGG | - | chr1_3:1235392-1235411 | None:intergenic | 15.0% |
| !! | ATGTTAATTAAACTAATCAA+AGG | + | chr1_3:1235687-1235706 | Msa0095850:intron | 15.0% |
| !! | TATTTCAGGAAAATATTAAA+TGG | - | chr1_3:1236165-1236184 | None:intergenic | 15.0% |
| !!! | TTGATTTTTCTAACCTAAAA+AGG | + | chr1_3:1227153-1227172 | Msa0095850:intron | 20.0% |
| !!! | ACTTATTTGATTTTATCTAG+TGG | - | chr1_3:1227620-1227639 | None:intergenic | 20.0% |
| !! | AATAAGCTAAAATCAACTTA+TGG | + | chr1_3:1227754-1227773 | Msa0095850:intron | 20.0% |
| !! | GTTTAATTAAATGACAGAAA+TGG | - | chr1_3:1228980-1228999 | None:intergenic | 20.0% |
| !!! | TCTTTTCAATAAAATTCTTG+TGG | + | chr1_3:1229242-1229261 | Msa0095850:intron | 20.0% |
| !!! | TTTTGTGTTTAAAATGCAAT+TGG | + | chr1_3:1230809-1230828 | Msa0095850:intron | 20.0% |
| !!! | TTACTATTGCTATTAACTTT+TGG | + | chr1_3:1230980-1230999 | Msa0095850:CDS | 20.0% |
| !!! | TATTTTTTCATTTGTATTGG+TGG | + | chr1_3:1231287-1231306 | Msa0095850:intron | 20.0% |
| !!! | ATTTTTTCATTTGTATTGGT+GGG | + | chr1_3:1231288-1231307 | Msa0095850:intron | 20.0% |
| !!! | CATCTAAAAAATTCTGAAAA+AGG | - | chr1_3:1231423-1231442 | None:intergenic | 20.0% |
| !!! | AAGTTAGTTGTTTTTGTAAT+GGG | + | chr1_3:1231878-1231897 | Msa0095850:intron | 20.0% |
| !! | CAAGTAAGATAATTAGAAAA+TGG | + | chr1_3:1232004-1232023 | Msa0095850:intron | 20.0% |
| !!! | TAGAATTTAGTTTTCTTGTA+AGG | - | chr1_3:1232060-1232079 | None:intergenic | 20.0% |
| !! | ATAAATGATTATGATCTCAT+AGG | + | chr1_3:1232315-1232334 | Msa0095850:CDS | 20.0% |
| !! | GTGACATTTGTAAATTATAT+GGG | - | chr1_3:1232467-1232486 | None:intergenic | 20.0% |
| !! | AGTGACATTTGTAAATTATA+TGG | - | chr1_3:1232468-1232487 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCTCATTTTCTC+AGG | + | chr1_3:1232653-1232672 | Msa0095850:intron | 20.0% |
| !! | TAAATCTAAATCCTTCTTAA+TGG | - | chr1_3:1232827-1232846 | None:intergenic | 20.0% |
| !! | AAGAAGGATTTAGATTTAAA+TGG | + | chr1_3:1232829-1232848 | Msa0095850:intron | 20.0% |
| !!! | AAGATAACATCGTATTATTT+TGG | + | chr1_3:1233343-1233362 | Msa0095850:intron | 20.0% |
| !!! | TTTTAACTGTTATCATACAA+TGG | - | chr1_3:1233771-1233790 | None:intergenic | 20.0% |
| !! | TTATTTGAAAAATAGTTCAC+AGG | + | chr1_3:1233808-1233827 | Msa0095850:intron | 20.0% |
| !! | TTACTAAACTTAATAGATCA+AGG | + | chr1_3:1233972-1233991 | Msa0095850:intron | 20.0% |
| !! | AAAATCCAATTAATTGTGTT+CGG | - | chr1_3:1234064-1234083 | None:intergenic | 20.0% |
| !! | ATAACAAAAATTATCATGGA+AGG | - | chr1_3:1234679-1234698 | None:intergenic | 20.0% |
| !! | TGCTATAACAAAAATTATCA+TGG | - | chr1_3:1234683-1234702 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTTGTTATAGC+AGG | + | chr1_3:1234682-1234701 | Msa0095850:intron | 20.0% |
| !! | TATATAGTTTATACACAAGA+AGG | - | chr1_3:1234805-1234824 | None:intergenic | 20.0% |
| !!! | AAATTACTCCAATAGATTTT+TGG | + | chr1_3:1234903-1234922 | Msa0095850:intron | 20.0% |
| !! | ATAAGCAAAAAAATCTCTAT+TGG | - | chr1_3:1234981-1235000 | None:intergenic | 20.0% |
| !!! | TTTATTTTTCATGACTGTAT+CGG | - | chr1_3:1235068-1235087 | None:intergenic | 20.0% |
| !! | AAAGAACATGAAACATATTA+AGG | - | chr1_3:1235166-1235185 | None:intergenic | 20.0% |
| !! | GCATAAAATAATATTGTACA+TGG | - | chr1_3:1235288-1235307 | None:intergenic | 20.0% |
| !! | ATAAAATGTCATCAATGTTA+AGG | - | chr1_3:1235315-1235334 | None:intergenic | 20.0% |
| !! | TATTAGATGTTAAAAACTTC+AGG | + | chr1_3:1235716-1235735 | Msa0095850:intron | 20.0% |
| !! | ATATGCATCAATTTATTCTT+CGG | - | chr1_3:1235940-1235959 | None:intergenic | 20.0% |
| !! | CGCTTTTCATATAAGTTTTT+CGG | + | chr1_3:1227420-1227439 | Msa0095850:intron | 25.0% |
| ! | AAGTTGTTTATCCAAACAAA+CGG | - | chr1_3:1227447-1227466 | None:intergenic | 25.0% |
| ! | GTAGTTATTGTAAGCTATAT+CGG | + | chr1_3:1227719-1227738 | Msa0095850:intron | 25.0% |
| ! | CTTATTTCAACTTACGAAAA+CGG | - | chr1_3:1227792-1227811 | None:intergenic | 25.0% |
| ! | TGAAATAAGGCAATCAAAAT+TGG | + | chr1_3:1227803-1227822 | Msa0095850:intron | 25.0% |
| ! | TTGGTACTATTTATGTGATA+TGG | + | chr1_3:1227822-1227841 | Msa0095850:intron | 25.0% |
| ! | TGGTACTATTTATGTGATAT+GGG | + | chr1_3:1227823-1227842 | Msa0095850:intron | 25.0% |
| ! | AAATCAAGGAAAGTAGAAAA+TGG | - | chr1_3:1227912-1227931 | None:intergenic | 25.0% |
| !!! | GCACTAAATTGATATTTTGA+CGG | + | chr1_3:1228224-1228243 | Msa0095850:intron | 25.0% |
| !!! | TGTGTTTTGAACTGAATTTT+TGG | + | chr1_3:1228279-1228298 | Msa0095850:intron | 25.0% |
| !!! | ATTTTTGGTGATTGTACTTT+AGG | + | chr1_3:1228294-1228313 | Msa0095850:intron | 25.0% |
| !! | AGTTCTTTTGATCCTAAAAA+TGG | - | chr1_3:1228514-1228533 | None:intergenic | 25.0% |
| ! | AACTGTCTTCTATAAATTTG+TGG | + | chr1_3:1228530-1228549 | Msa0095850:CDS | 25.0% |
| !!! | GGAATTTTTAGTACTTGTAT+TGG | + | chr1_3:1228760-1228779 | Msa0095850:intron | 25.0% |
| !! | AATAACATATAGCAGAGTTT+TGG | + | chr1_3:1228830-1228849 | Msa0095850:intron | 25.0% |
| ! | GCAGAATCATAAAAAGAAAA+TGG | - | chr1_3:1228878-1228897 | None:intergenic | 25.0% |
| ! | ACAAAACAACTGCAAAATTT+CGG | - | chr1_3:1229002-1229021 | None:intergenic | 25.0% |
| ! | ACTACATCAATACATATAGA+GGG | - | chr1_3:1229112-1229131 | None:intergenic | 25.0% |
| ! | TACTACATCAATACATATAG+AGG | - | chr1_3:1229113-1229132 | None:intergenic | 25.0% |
| !! | ATGTATTGATGTAGTAAACA+CGG | + | chr1_3:1229117-1229136 | Msa0095850:intron | 25.0% |
| ! | TTGAAAAGAAAGACAAAAGA+AGG | - | chr1_3:1229231-1229250 | None:intergenic | 25.0% |
| !! | GATTATTTCTCTTCCATATT+TGG | + | chr1_3:1229439-1229458 | Msa0095850:intron | 25.0% |
| !! | GATTTTATTACAGTTACAAG+AGG | - | chr1_3:1229755-1229774 | None:intergenic | 25.0% |
| ! | AATATGCATGAATTCTTTCT+CGG | - | chr1_3:1229931-1229950 | None:intergenic | 25.0% |
| ! | AGAATTCATGCATATTTGTT+TGG | + | chr1_3:1229935-1229954 | Msa0095850:intron | 25.0% |
| !!! | TTTTAGAAAATGACTAAAGC+TGG | - | chr1_3:1230065-1230084 | None:intergenic | 25.0% |
| !! | TTATTGGTTGTTGGTTAAAA+TGG | + | chr1_3:1230209-1230228 | Msa0095850:intron | 25.0% |
| !!! | AATGAATTTTAACTGCATCT+AGG | - | chr1_3:1230329-1230348 | None:intergenic | 25.0% |
| ! | CTGAAAATGTGTTTATAAGT+GGG | - | chr1_3:1230490-1230509 | None:intergenic | 25.0% |
| !!! | CTAGAAAAGCATTTATAAGT+GGG | - | chr1_3:1230692-1230711 | None:intergenic | 25.0% |
| !!! | TCTAGAAAAGCATTTATAAG+TGG | - | chr1_3:1230693-1230712 | None:intergenic | 25.0% |
| ! | TTTACATGAATAAACTTCTC+AGG | + | chr1_3:1230877-1230896 | Msa0095850:intron | 25.0% |
| ! | TAATTACTGTTCTATAGTGT+AGG | + | chr1_3:1230932-1230951 | Msa0095850:intron | 25.0% |
| !!! | TTTTTTCATTTGTATTGGTG+GGG | + | chr1_3:1231289-1231308 | Msa0095850:intron | 25.0% |
| !! | CAGAAAATTTTCTTTGCAAA+TGG | + | chr1_3:1231532-1231551 | Msa0095850:intron | 25.0% |
| ! | GTGTTAGTAAATACATTTGA+AGG | + | chr1_3:1231629-1231648 | Msa0095850:intron | 25.0% |
| ! | TAATAGTCACTAATTCTAAC+AGG | + | chr1_3:1231712-1231731 | Msa0095850:intron | 25.0% |
| !!! | CAAGTTAGTTGTTTTTGTAA+TGG | + | chr1_3:1231877-1231896 | Msa0095850:intron | 25.0% |
| !! | ATATTGAAAAAGCATGTCAT+CGG | - | chr1_3:1231904-1231923 | None:intergenic | 25.0% |
| !!! | ATGACATGCTTTTTCAATAT+AGG | + | chr1_3:1231904-1231923 | Msa0095850:intron | 25.0% |
| ! | ACAAAGTTATTGTTGATACA+AGG | + | chr1_3:1232571-1232590 | Msa0095850:intron | 25.0% |
| ! | AGCAGGAAAGATATTATTAT+TGG | - | chr1_3:1232700-1232719 | None:intergenic | 25.0% |
| ! | TAGGATAGTCTAATTATTAG+AGG | + | chr1_3:1232769-1232788 | Msa0095850:intron | 25.0% |
| ! | TTGTCATTAGACAAGATATA+TGG | + | chr1_3:1232853-1232872 | Msa0095850:intron | 25.0% |
| ! | AAATATCAAAGAAATAGCCA+CGG | - | chr1_3:1233102-1233121 | None:intergenic | 25.0% |
| ! | ATCTATTCCTGCAATTAAAA+AGG | - | chr1_3:1233372-1233391 | None:intergenic | 25.0% |
| ! | TATTAGAAAACTTCTTTCCT+AGG | - | chr1_3:1233731-1233750 | None:intergenic | 25.0% |
| ! | TTTCATCAGAATTTGAAAAC+TGG | - | chr1_3:1233923-1233942 | None:intergenic | 25.0% |
| ! | TGACAATTTGTACTAACAAA+AGG | + | chr1_3:1233943-1233962 | Msa0095850:intron | 25.0% |
| ! | GACAATTTGTACTAACAAAA+GGG | + | chr1_3:1233944-1233963 | Msa0095850:intron | 25.0% |
| !! | AAAGAATGAAGGTATAACAA+CGG | - | chr1_3:1234559-1234578 | None:intergenic | 25.0% |
| ! | TTATCATGGAAGGAAAATAA+GGG | - | chr1_3:1234669-1234688 | None:intergenic | 25.0% |
| ! | ATTATCATGGAAGGAAAATA+AGG | - | chr1_3:1234670-1234689 | None:intergenic | 25.0% |
| ! | TATCAAAAAGACATCACAAA+TGG | - | chr1_3:1234768-1234787 | None:intergenic | 25.0% |
| ! | CTATTAGATTGTTGCAATAA+GGG | + | chr1_3:1234868-1234887 | Msa0095850:intron | 25.0% |
| ! | TATTAGATTGTTGCAATAAG+GGG | + | chr1_3:1234869-1234888 | Msa0095850:intron | 25.0% |
| !! | TTTTGCTTATAATTGTGAAC+CGG | + | chr1_3:1234991-1235010 | Msa0095850:intron | 25.0% |
| !!! | TTATTTTTCATGACTGTATC+GGG | - | chr1_3:1235067-1235086 | None:intergenic | 25.0% |
| ! | AATAAATGTTCATCAGAAAG+AGG | + | chr1_3:1235082-1235101 | Msa0095850:intron | 25.0% |
| !!! | ACTTTAACTTTTCTAGCATT+TGG | + | chr1_3:1235249-1235268 | Msa0095850:intron | 25.0% |
| ! | TCCTAAATATACTTTGATGA+TGG | + | chr1_3:1235484-1235503 | Msa0095850:intron | 25.0% |
| ! | TATTAAAGAGAATAAGCAGT+TGG | + | chr1_3:1235612-1235631 | Msa0095850:intron | 25.0% |
| ! | ATTAAAGAGAATAAGCAGTT+GGG | + | chr1_3:1235613-1235632 | Msa0095850:intron | 25.0% |
| !! | TTACGTTTTCTTTTCATGTA+TGG | + | chr1_3:1235795-1235814 | Msa0095850:intron | 25.0% |
| ! | TCAGGCATTTAAAAATGTAT+TGG | + | chr1_3:1235819-1235838 | Msa0095850:intron | 25.0% |
| ! | AAATGTATTGGACAAATTTG+TGG | + | chr1_3:1235831-1235850 | Msa0095850:CDS | 25.0% |
| ! | AATGTATTGGACAAATTTGT+GGG | + | chr1_3:1235832-1235851 | Msa0095850:CDS | 25.0% |
| ! | AGTGAACTTTATGAATGAAT+TGG | + | chr1_3:1235899-1235918 | Msa0095850:three_prime_UTR | 25.0% |
| ! | TTCAGTGTATCAAATACATA+GGG | - | chr1_3:1236095-1236114 | None:intergenic | 25.0% |
| ! | ATTCAGTGTATCAAATACAT+AGG | - | chr1_3:1236096-1236115 | None:intergenic | 25.0% |
| ! | TCAGGAAAATATTAAATGGT+GGG | - | chr1_3:1236161-1236180 | None:intergenic | 25.0% |
| ! | TTCAGGAAAATATTAAATGG+TGG | - | chr1_3:1236162-1236181 | None:intergenic | 25.0% |
| ! | TAGTTTAGCTAGTTCAAATT+GGG | - | chr1_3:1236196-1236215 | None:intergenic | 25.0% |
| ! | TAGTTTAGCTAGTTCAAATT+GGG | - | chr1_3:1236196-1236215 | None:intergenic | 25.0% |
| ! | GTACAAGACATAATTATACA+TGG | - | chr1_3:1236271-1236290 | None:intergenic | 25.0% |
| !! | CTTGTACATTATTGATTAGT+TGG | + | chr1_3:1236284-1236303 | Msa0095850:three_prime_UTR | 25.0% |
| ! | GAAGAACAATTTTCCAATGT+TGG | + | chr1_3:1226867-1226886 | Msa0095850:five_prime_UTR | 30.0% |
| AATTTCAGATTTCACAAGAG+AGG | - | chr1_3:1226928-1226947 | None:intergenic | 30.0% | |
| ! | TTTGATCGTTTGAAGTTTGA+AGG | - | chr1_3:1226962-1226981 | None:intergenic | 30.0% |
| AACTTCAAACGATCAAAGTA+TGG | + | chr1_3:1226965-1226984 | Msa0095850:exon | 30.0% | |
| ! | TGTTGTTTGATTGATTACAG+CGG | - | chr1_3:1227072-1227091 | None:intergenic | 30.0% |
| TAACCTAAAAAGGTTCTATG+CGG | + | chr1_3:1227163-1227182 | Msa0095850:intron | 30.0% | |
| AGTTGTTTATCCAAACAAAC+GGG | - | chr1_3:1227446-1227465 | None:intergenic | 30.0% | |
| AAGCATGTTTGACAATGTTT+GGG | - | chr1_3:1227594-1227613 | None:intergenic | 30.0% | |
| TAAGCATGTTTGACAATGTT+TGG | - | chr1_3:1227595-1227614 | None:intergenic | 30.0% | |
| TTATTGTAAGCTATATCGGA+GGG | + | chr1_3:1227723-1227742 | Msa0095850:intron | 30.0% | |
| !! | CGTTTTCGTAAGTTGAAATA+AGG | + | chr1_3:1227790-1227809 | Msa0095850:intron | 30.0% |
| TTATGTGATATGGGATTATG+TGG | + | chr1_3:1227832-1227851 | Msa0095850:intron | 30.0% | |
| !! | TCCTTGATTTGTGTAAGAAA+CGG | + | chr1_3:1227922-1227941 | Msa0095850:CDS | 30.0% |
| ! | TGCGCTAAATAAATTTGTTC+GGG | - | chr1_3:1228053-1228072 | None:intergenic | 30.0% |
| ! | CTGCGCTAAATAAATTTGTT+CGG | - | chr1_3:1228054-1228073 | None:intergenic | 30.0% |
| ! | TGAGATAGGTTATTTCACAT+TGG | - | chr1_3:1228088-1228107 | None:intergenic | 30.0% |
| GTGAAATAACCTATCTCAAT+TGG | + | chr1_3:1228090-1228109 | Msa0095850:intron | 30.0% | |
| TTTGATGAACCAATTGAGAT+AGG | - | chr1_3:1228102-1228121 | None:intergenic | 30.0% | |
| CAAAATATCAATTTAGTGCG+TGG | - | chr1_3:1228223-1228242 | None:intergenic | 30.0% | |
| TTACGATTACTGTTCATGAT+CGG | - | chr1_3:1228322-1228341 | None:intergenic | 30.0% | |
| !!! | CTACTTTGTTTTGTAGTCTA+TGG | + | chr1_3:1228404-1228423 | Msa0095850:intron | 30.0% |
| ! | TCTTTTGATCCTAAAAATGG+AGG | - | chr1_3:1228511-1228530 | None:intergenic | 30.0% |
| AAACTATGCACAAAAGATTG+TGG | - | chr1_3:1228600-1228619 | None:intergenic | 30.0% | |
| ! | AATCTTTTGTGCATAGTTTC+TGG | + | chr1_3:1228601-1228620 | Msa0095850:CDS | 30.0% |
| ! | CATATAACTTACCTTGTTTG+AGG | - | chr1_3:1228627-1228646 | None:intergenic | 30.0% |
| TAATAGGTCATAACAAGAAG+AGG | - | chr1_3:1228654-1228673 | None:intergenic | 30.0% | |
| TAATATGCTATCAACTGTGT+AGG | + | chr1_3:1228739-1228758 | Msa0095850:intron | 30.0% | |
| !! | TAAATGACAGAAATGGATTG+AGG | - | chr1_3:1228973-1228992 | None:intergenic | 30.0% |
| !! | GAAATTTTGCAGTTGTTTTG+TGG | + | chr1_3:1229001-1229020 | Msa0095850:intron | 30.0% |
| TTGGATAAATTGAGTAATCG+GGG | - | chr1_3:1229289-1229308 | None:intergenic | 30.0% | |
| CTTGGATAAATTGAGTAATC+GGG | - | chr1_3:1229290-1229309 | None:intergenic | 30.0% | |
| CCTTGGATAAATTGAGTAAT+CGG | - | chr1_3:1229291-1229310 | None:intergenic | 30.0% | |
| CGATTACTCAATTTATCCAA+GGG | + | chr1_3:1229289-1229308 | Msa0095850:CDS | 30.0% | |
| ! | TAACTTCTCTGATTGTTTTC+TGG | + | chr1_3:1229504-1229523 | Msa0095850:intron | 30.0% |
| ! | AACTTCTCTGATTGTTTTCT+GGG | + | chr1_3:1229505-1229524 | Msa0095850:intron | 30.0% |
| !! | TTCTGTACTGGTTAAATATC+TGG | + | chr1_3:1229530-1229549 | Msa0095850:intron | 30.0% |
| TCAATGTTCACACTTATTGA+AGG | + | chr1_3:1229558-1229577 | Msa0095850:intron | 30.0% | |
| ACAGCTCATAATTAGATAAC+TGG | + | chr1_3:1229582-1229601 | Msa0095850:intron | 30.0% | |
| CAAGAATTGTTAGCAATTGT+AGG | - | chr1_3:1230120-1230139 | None:intergenic | 30.0% | |
| ATGACATAATGCGAAGATAT+AGG | - | chr1_3:1230154-1230173 | None:intergenic | 30.0% | |
| ! | TCATGGTCCTTTTCATTTAT+TGG | + | chr1_3:1230193-1230212 | Msa0095850:intron | 30.0% |
| CCAACAACCAATAAATGAAA+AGG | - | chr1_3:1230203-1230222 | None:intergenic | 30.0% | |
| !! | CCTTTTCATTTATTGGTTGT+TGG | + | chr1_3:1230200-1230219 | Msa0095850:intron | 30.0% |
| AAGAAAGATCTATACTCTCA+TGG | - | chr1_3:1230282-1230301 | None:intergenic | 30.0% | |
| AGAGTATAGATCTTTCTTGA+AGG | + | chr1_3:1230284-1230303 | Msa0095850:intron | 30.0% | |
| AAATGTATATGCTCAAGCAA+CGG | - | chr1_3:1230388-1230407 | None:intergenic | 30.0% | |
| TCTTCTCTTTGAATTTGAGT+TGG | + | chr1_3:1230418-1230437 | Msa0095850:intron | 30.0% | |
| ! | CTTCTCTTTGAATTTGAGTT+GGG | + | chr1_3:1230419-1230438 | Msa0095850:intron | 30.0% |
| AAAATGTGTTTATAAGTGGG+AGG | - | chr1_3:1230487-1230506 | None:intergenic | 30.0% | |
| CCTGAAAATGTGTTTATAAG+TGG | - | chr1_3:1230491-1230510 | None:intergenic | 30.0% | |
| ! | CCACTTATAAACACATTTTC+AGG | + | chr1_3:1230488-1230507 | Msa0095850:intron | 30.0% |
| GAGTTTATCCAAGATTCATT+GGG | - | chr1_3:1230605-1230624 | None:intergenic | 30.0% | |
| TCCTATACCATCTTAGAATT+TGG | + | chr1_3:1230623-1230642 | Msa0095850:intron | 30.0% | |
| CCTATACCATCTTAGAATTT+GGG | + | chr1_3:1230624-1230643 | Msa0095850:intron | 30.0% | |
| TAACTCAACCCTACAAAATA+GGG | + | chr1_3:1230654-1230673 | Msa0095850:intron | 30.0% | |
| ! | ATCTTTCACCCTATTTTGTA+GGG | - | chr1_3:1230665-1230684 | None:intergenic | 30.0% |
| ATAGATCCTACTGCAAAATA+CGG | - | chr1_3:1230788-1230807 | None:intergenic | 30.0% | |
| TGTAATGAATATGCGAACTA+GGG | - | chr1_3:1230842-1230861 | None:intergenic | 30.0% | |
| TTGTAATGAATATGCGAACT+AGG | - | chr1_3:1230843-1230862 | None:intergenic | 30.0% | |
| TAAAATCGTCACTATCTACT+TGG | - | chr1_3:1230963-1230982 | None:intergenic | 30.0% | |
| !! | CTATTGCTATTAACTTTTGG+TGG | + | chr1_3:1230983-1231002 | Msa0095850:CDS | 30.0% |
| ATTTACGCAGAATATTGAGA+CGG | + | chr1_3:1231052-1231071 | Msa0095850:CDS | 30.0% | |
| CTAACACCATTACAAATACA+AGG | - | chr1_3:1231616-1231635 | None:intergenic | 30.0% | |
| TTTAAGAATCCGTACAATCA+AGG | + | chr1_3:1231671-1231690 | Msa0095850:intron | 30.0% | |
| GTTAGTATTCCTTGATTGTA+CGG | - | chr1_3:1231683-1231702 | None:intergenic | 30.0% | |
| TTAACTCGATGAACTTTGAT+AGG | - | chr1_3:1231831-1231850 | None:intergenic | 30.0% | |
| !!! | ATGCTTTTTCAATATAGGAC+AGG | + | chr1_3:1231909-1231928 | Msa0095850:intron | 30.0% |
| AAAATTGATTAGACCGTCAA+TGG | - | chr1_3:1232096-1232115 | None:intergenic | 30.0% | |
| ! | GTTGAAAGGAATGGATTTAA+AGG | + | chr1_3:1232161-1232180 | Msa0095850:CDS | 30.0% |
| AAAGGAGAAAAGACTTAAAG+AGG | + | chr1_3:1232179-1232198 | Msa0095850:CDS | 30.0% | |
| AAGGAGAAAAGACTTAAAGA+GGG | + | chr1_3:1232180-1232199 | Msa0095850:CDS | 30.0% | |
| ! | TTTGACATTCCAGAGAATTT+TGG | - | chr1_3:1232394-1232413 | None:intergenic | 30.0% |
| !! | AAGACATTTTGAAGAGTTTG+TGG | - | chr1_3:1232417-1232436 | None:intergenic | 30.0% |
| TCAAAATGTCTTTCTTGCTA+TGG | + | chr1_3:1232425-1232444 | Msa0095850:CDS | 30.0% | |
| TTTGTACTTGATCATATCGA+TGG | + | chr1_3:1232596-1232615 | Msa0095850:intron | 30.0% | |
| AATGTATTTGTCAACTTGCA+AGG | - | chr1_3:1232629-1232648 | None:intergenic | 30.0% | |
| TAATATCTTTCCTGCTTGAA+AGG | + | chr1_3:1232704-1232723 | Msa0095850:intron | 30.0% | |
| AATATCTTTCCTGCTTGAAA+GGG | + | chr1_3:1232705-1232724 | Msa0095850:intron | 30.0% | |
| AAAGTGAGTAGATCATATGT+AGG | + | chr1_3:1232750-1232769 | Msa0095850:intron | 30.0% | |
| AGTCTAATTATTAGAGGTAG+AGG | + | chr1_3:1232775-1232794 | Msa0095850:intron | 30.0% | |
| GTCTAATTATTAGAGGTAGA+GGG | + | chr1_3:1232776-1232795 | Msa0095850:intron | 30.0% | |
| CATTAGACAAGATATATGGT+AGG | + | chr1_3:1232857-1232876 | Msa0095850:intron | 30.0% | |
| !! | AAGGTGTTATTGTCGTTAAA+AGG | + | chr1_3:1232934-1232953 | Msa0095850:intron | 30.0% |
| !! | AGGTGTTATTGTCGTTAAAA+GGG | + | chr1_3:1232935-1232954 | Msa0095850:intron | 30.0% |
| ! | TCACTTCTAAAGAATAAAGG+AGG | - | chr1_3:1232979-1232998 | None:intergenic | 30.0% |
| ! | GCATCACTTCTAAAGAATAA+AGG | - | chr1_3:1232982-1233001 | None:intergenic | 30.0% |
| ! | TATTCTTTAGAAGTGATGCT+TGG | + | chr1_3:1232983-1233002 | Msa0095850:intron | 30.0% |
| ! | ATTCTTTAGAAGTGATGCTT+GGG | + | chr1_3:1232984-1233003 | Msa0095850:intron | 30.0% |
| AACTAACTATTGAGGAAGAT+CGG | + | chr1_3:1233267-1233286 | Msa0095850:CDS | 30.0% | |
| TCATAAGTGTTTCATGTGAT+TGG | + | chr1_3:1233312-1233331 | Msa0095850:intron | 30.0% | |
| AGCAATGAATTCTATTCTGA+AGG | + | chr1_3:1233432-1233451 | Msa0095850:CDS | 30.0% | |
| GCAATGAATTCTATTCTGAA+GGG | + | chr1_3:1233433-1233452 | Msa0095850:CDS | 30.0% | |
| ! | CAATGAATTCTATTCTGAAG+GGG | + | chr1_3:1233434-1233453 | Msa0095850:CDS | 30.0% |
| ! | TTAATAGGTTGGAGATTCAA+GGG | - | chr1_3:1233589-1233608 | None:intergenic | 30.0% |
| !!! | AAAGTTTTGGGTTAATAGGT+TGG | - | chr1_3:1233600-1233619 | None:intergenic | 30.0% |
| !!! | CAGAAAAGTTTTGGGTTAAT+AGG | - | chr1_3:1233604-1233623 | None:intergenic | 30.0% |
| !! | TCTGCATAAGTTCTAAAACA+AGG | + | chr1_3:1233854-1233873 | Msa0095850:intron | 30.0% |
| AATGCACACGGAATTTATAT+CGG | + | chr1_3:1234003-1234022 | Msa0095850:intron | 30.0% | |
| AAACTCCGAACACAATTAAT+TGG | + | chr1_3:1234056-1234075 | Msa0095850:intron | 30.0% | |
| AAGCTGAATCAATGTTGAAA+TGG | + | chr1_3:1234263-1234282 | Msa0095850:intron | 30.0% | |
| !! | TGTCTTGAATTTGCTATCAA+TGG | + | chr1_3:1234297-1234316 | Msa0095850:intron | 30.0% |
| ACTAGAAAATAGAGTGACTA+TGG | + | chr1_3:1234333-1234352 | Msa0095850:intron | 30.0% | |
| GGAAAAGAATTGGATAGTAA+CGG | - | chr1_3:1234427-1234446 | None:intergenic | 30.0% | |
| TATCATGGAAGGAAAATAAG+GGG | - | chr1_3:1234668-1234687 | None:intergenic | 30.0% | |
| AAAAGACATCACAAATGGTA+TGG | - | chr1_3:1234763-1234782 | None:intergenic | 30.0% | |
| GCTATTAGATTGTTGCAATA+AGG | + | chr1_3:1234867-1234886 | Msa0095850:intron | 30.0% | |
| ATTAGATTGTTGCAATAAGG+GGG | + | chr1_3:1234870-1234889 | Msa0095850:intron | 30.0% | |
| ! | TATTTTTCATGACTGTATCG+GGG | - | chr1_3:1235066-1235085 | None:intergenic | 30.0% |
| CCAAATAGTTATAGCATAGA+TGG | - | chr1_3:1235123-1235142 | None:intergenic | 30.0% | |
| CCATCTATGCTATAACTATT+TGG | + | chr1_3:1235120-1235139 | Msa0095850:intron | 30.0% | |
| GGAACATGAAACACATATTA+AGG | - | chr1_3:1235206-1235225 | None:intergenic | 30.0% | |
| GCCATCATCAAAGTATATTT+AGG | - | chr1_3:1235488-1235507 | None:intergenic | 30.0% | |
| ! | GTTCACACTTTAGAAGTATA+TGG | + | chr1_3:1235743-1235762 | Msa0095850:intron | 30.0% |
| ! | TTTCTTTTCATGTATGGTTC+AGG | + | chr1_3:1235801-1235820 | Msa0095850:intron | 30.0% |
| AACAGTTGTTAGTGTTGTAT+AGG | + | chr1_3:1236044-1236063 | Msa0095850:three_prime_UTR | 30.0% | |
| TCAGTGTATCAAATACATAG+GGG | - | chr1_3:1236094-1236113 | None:intergenic | 30.0% | |
| CAGGAAAATATTAAATGGTG+GGG | - | chr1_3:1236160-1236179 | None:intergenic | 30.0% | |
| CTAGTTTAGCTAGTTCAAAT+TGG | - | chr1_3:1236197-1236216 | None:intergenic | 30.0% | |
| CTAGTTTAGCTAGTTCAAAT+TGG | - | chr1_3:1236197-1236216 | None:intergenic | 30.0% | |
| CGATGTATCATGACGATTAA+CGG | - | chr1_3:1226789-1226808 | None:intergenic | 35.0% | |
| GTTGTTTGATTGATTACAGC+GGG | - | chr1_3:1227071-1227090 | None:intergenic | 35.0% | |
| CTTTCTCTTTATGGAATCCA+CGG | + | chr1_3:1227206-1227225 | Msa0095850:CDS | 35.0% | |
| TGATCTTGGAAGTCATCATA+GGG | + | chr1_3:1227315-1227334 | Msa0095850:CDS | 35.0% | |
| GTTATTGTAAGCTATATCGG+AGG | + | chr1_3:1227722-1227741 | Msa0095850:intron | 35.0% | |
| AGGAAAGTAGAAAATGGTAG+AGG | - | chr1_3:1227906-1227925 | None:intergenic | 35.0% | |
| TCCGTTTCTTACACAAATCA+AGG | - | chr1_3:1227926-1227945 | None:intergenic | 35.0% | |
| CGAACAAATTTATTTAGCGC+AGG | + | chr1_3:1228052-1228071 | Msa0095850:CDS | 35.0% | |
| ATATCAATTTAGTGCGTGGA+TGG | - | chr1_3:1228219-1228238 | None:intergenic | 35.0% | |
| GATCATGAACAGTAATCGTA+AGG | + | chr1_3:1228321-1228340 | Msa0095850:CDS | 35.0% | |
| TCGTAAGGAGAAAGTTCAAT+TGG | + | chr1_3:1228336-1228355 | Msa0095850:CDS | 35.0% | |
| CGTAAGGAGAAAGTTCAATT+GGG | + | chr1_3:1228337-1228356 | Msa0095850:CDS | 35.0% | |
| TTCTGCAAAAAATCCTTTCC+AGG | + | chr1_3:1228892-1228911 | Msa0095850:intron | 35.0% | |
| TCTGCAAAAAATCCTTTCCA+GGG | + | chr1_3:1228893-1228912 | Msa0095850:intron | 35.0% | |
| GAATAAGTAACTGAAAACCC+TGG | - | chr1_3:1228913-1228932 | None:intergenic | 35.0% | |
| CCGATTACTCAATTTATCCA+AGG | + | chr1_3:1229288-1229307 | Msa0095850:CDS | 35.0% | |
| CTTAATGGAGTTTGGACAAA+AGG | + | chr1_3:1229319-1229338 | Msa0095850:CDS | 35.0% | |
| ! | TGATAAGCCTTTCTGTTTCT+GGG | + | chr1_3:1229414-1229433 | Msa0095850:intron | 35.0% |
| TAATCTACCCAGAAACAGAA+AGG | - | chr1_3:1229424-1229443 | None:intergenic | 35.0% | |
| !!! | TTGTTTGGTGCTTTTGATGA+AGG | + | chr1_3:1229950-1229969 | Msa0095850:intron | 35.0% |
| AAGGTGATTGATATGTGCAT+TGG | + | chr1_3:1229969-1229988 | Msa0095850:intron | 35.0% | |
| AATAAATGCTTACAAGCCTG+AGG | + | chr1_3:1230085-1230104 | Msa0095850:intron | 35.0% | |
| ATAAATGCTTACAAGCCTGA+GGG | + | chr1_3:1230086-1230105 | Msa0095850:intron | 35.0% | |
| TCTAACTCAACCTTACGAAA+CGG | + | chr1_3:1230442-1230461 | Msa0095850:intron | 35.0% | |
| GGAGTTTATCCAAGATTCAT+TGG | - | chr1_3:1230606-1230625 | None:intergenic | 35.0% | |
| !! | CCCAAATTCTAAGATGGTAT+AGG | - | chr1_3:1230627-1230646 | None:intergenic | 35.0% |
| ! | GTTCAACCCAAATTCTAAGA+TGG | - | chr1_3:1230633-1230652 | None:intergenic | 35.0% |
| ! | CTATTTTGTAGGGTTGAGTT+AGG | - | chr1_3:1230655-1230674 | None:intergenic | 35.0% |
| CTAACTCAACCCTACAAAAT+AGG | + | chr1_3:1230653-1230672 | Msa0095850:intron | 35.0% | |
| ! | CATCTTTCACCCTATTTTGT+AGG | - | chr1_3:1230666-1230685 | None:intergenic | 35.0% |
| ! | AAGGTTGATTGACAAAGAGA+TGG | + | chr1_3:1231205-1231224 | Msa0095850:intron | 35.0% |
| ATTACAAATACAAGGTGGTG+TGG | - | chr1_3:1231608-1231627 | None:intergenic | 35.0% | |
| ACACCACCTTGTATTTGTAA+TGG | + | chr1_3:1231607-1231626 | Msa0095850:intron | 35.0% | |
| ACACCATTACAAATACAAGG+TGG | - | chr1_3:1231613-1231632 | None:intergenic | 35.0% | |
| !! | TTGTTTCTGAGTGTGAAGAA+TGG | + | chr1_3:1231778-1231797 | Msa0095850:intron | 35.0% |
| ! | ACAACTAACTTGTGAGCATA+AGG | - | chr1_3:1231869-1231888 | None:intergenic | 35.0% |
| TTACTTGCTCTTCCATTCTT+AGG | - | chr1_3:1231991-1232010 | None:intergenic | 35.0% | |
| GCTTATCATTTCTCCATTGA+CGG | + | chr1_3:1232080-1232099 | Msa0095850:intron | 35.0% | |
| AATTGCAGTCAGATGTTGAA+AGG | + | chr1_3:1232147-1232166 | Msa0095850:CDS | 35.0% | |
| AGGAGAAAAGACTTAAAGAG+GGG | + | chr1_3:1232181-1232200 | Msa0095850:CDS | 35.0% | |
| ATGATCTACTCACTTTACGT+AGG | - | chr1_3:1232746-1232765 | None:intergenic | 35.0% | |
| ! | GTTGAGCCAACAATTTTCAT+TGG | - | chr1_3:1232805-1232824 | None:intergenic | 35.0% |
| AGATATATGGTAGGACATTG+TGG | + | chr1_3:1232866-1232885 | Msa0095850:intron | 35.0% | |
| ! | TATGACTGATTCCAACTAGT+GGG | + | chr1_3:1232909-1232928 | Msa0095850:intron | 35.0% |
| TACACGGAAATTTGATGAGA+TGG | + | chr1_3:1233241-1233260 | Msa0095850:CDS | 35.0% | |
| GATGGATGAACTAACTATTG+AGG | + | chr1_3:1233259-1233278 | Msa0095850:CDS | 35.0% | |
| ATTCACACAACAGGTAATTG+AGG | + | chr1_3:1233465-1233484 | Msa0095850:intron | 35.0% | |
| !!! | TGTGCTCTAGCTTTATCTTT+TGG | + | chr1_3:1233491-1233510 | Msa0095850:intron | 35.0% |
| TGTACTTAGAGTCACATGAA+GGG | + | chr1_3:1233550-1233569 | Msa0095850:intron | 35.0% | |
| ! | GTTAATAGGTTGGAGATTCA+AGG | - | chr1_3:1233590-1233609 | None:intergenic | 35.0% |
| ! | GTGAGAGTCAGAAAAGTTTT+GGG | - | chr1_3:1233612-1233631 | None:intergenic | 35.0% |
| ! | AGTGAGAGTCAGAAAAGTTT+TGG | - | chr1_3:1233613-1233632 | None:intergenic | 35.0% |
| !! | AAGCAACATGAATTTGCTGA+TGG | + | chr1_3:1233695-1233714 | Msa0095850:intron | 35.0% |
| TACAATGGAAAACAGTTCGA+GGG | - | chr1_3:1233756-1233775 | None:intergenic | 35.0% | |
| ATACAATGGAAAACAGTTCG+AGG | - | chr1_3:1233757-1233776 | None:intergenic | 35.0% | |
| ATGCACACGGAATTTATATC+GGG | + | chr1_3:1234004-1234023 | Msa0095850:intron | 35.0% | |
| CCAATACAAAGAATGCTTCA+GGG | - | chr1_3:1234128-1234147 | None:intergenic | 35.0% | |
| TCCAATACAAAGAATGCTTC+AGG | - | chr1_3:1234129-1234148 | None:intergenic | 35.0% | |
| ! | GAAGCATTCTTTGTATTGGA+CGG | + | chr1_3:1234129-1234148 | Msa0095850:intron | 35.0% |
| !! | GAACATTGTAAGGTATTGCA+CGG | - | chr1_3:1234160-1234179 | None:intergenic | 35.0% |
| CAATGTTGAAATGGAGATGA+TGG | + | chr1_3:1234272-1234291 | Msa0095850:intron | 35.0% | |
| !! | AGTCACTCTATTTTCTAGTG+AGG | - | chr1_3:1234332-1234351 | None:intergenic | 35.0% |
| !! | TGAAGGTTGTTTTCTCCATA+GGG | - | chr1_3:1234388-1234407 | None:intergenic | 35.0% |
| CAAGGATATGCAAAGAATGA+AGG | - | chr1_3:1234570-1234589 | None:intergenic | 35.0% | |
| CATTCTTTGCATATCCTTGT+AGG | + | chr1_3:1234571-1234590 | Msa0095850:intron | 35.0% | |
| ATCATGGAAGGAAAATAAGG+GGG | - | chr1_3:1234667-1234686 | None:intergenic | 35.0% | |
| ATCAAAATTTCCACTTGCCT+TGG | + | chr1_3:1234728-1234747 | Msa0095850:intron | 35.0% | |
| AGAATAAGCAGTTGGGTTAT+TGG | + | chr1_3:1235620-1235639 | Msa0095850:intron | 35.0% | |
| GAATAAGCAGTTGGGTTATT+GGG | + | chr1_3:1235621-1235640 | Msa0095850:intron | 35.0% | |
| TGCATCAATTTATTCTTCGG+AGG | - | chr1_3:1235937-1235956 | None:intergenic | 35.0% | |
| ! | AAACCAAAGCATTTCTTCGT+TGG | + | chr1_3:1235963-1235982 | Msa0095850:three_prime_UTR | 35.0% |
| TATCAAATACATAGGGGCTA+GGG | - | chr1_3:1236088-1236107 | None:intergenic | 35.0% | |
| ! | ATTGGGAGCTTCTTTATTTC+AGG | - | chr1_3:1236179-1236198 | None:intergenic | 35.0% |
| TGTATCATGACGATTAACGG+TGG | - | chr1_3:1226786-1226805 | None:intergenic | 40.0% | |
| TGACTGAGAGTTAATTGTCG+TGG | + | chr1_3:1226813-1226832 | Msa0095850:five_prime_UTR | 40.0% | |
| GACTGAGAGTTAATTGTCGT+GGG | + | chr1_3:1226814-1226833 | Msa0095850:five_prime_UTR | 40.0% | |
| ACTGAGAGTTAATTGTCGTG+GGG | + | chr1_3:1226815-1226834 | Msa0095850:five_prime_UTR | 40.0% | |
| AGATTTCACAAGAGAGGAGA+AGG | - | chr1_3:1226922-1226941 | None:intergenic | 40.0% | |
| TGGGAAGTTCTTCGTATCTT+CGG | - | chr1_3:1227007-1227026 | None:intergenic | 40.0% | |
| ! | CAACCGCATAGAACCTTTTT+AGG | - | chr1_3:1227169-1227188 | None:intergenic | 40.0% |
| ! | AGAGAAAGCTCTCCAAGTTT+TGG | - | chr1_3:1227194-1227213 | None:intergenic | 40.0% |
| CTTGGAGAGCTTTCTCTTTA+TGG | + | chr1_3:1227197-1227216 | Msa0095850:CDS | 40.0% | |
| TAATCTAAACCATCGTTCCG+TGG | - | chr1_3:1227226-1227245 | None:intergenic | 40.0% | |
| CGATGGTTTAGATTACTTGC+AGG | + | chr1_3:1227231-1227250 | Msa0095850:CDS | 40.0% | |
| GTTTAGATTACTTGCAGGCA+CGG | + | chr1_3:1227236-1227255 | Msa0095850:CDS | 40.0% | |
| TTTAGATTACTTGCAGGCAC+GGG | + | chr1_3:1227237-1227256 | Msa0095850:CDS | 40.0% | |
| CCAAGATCACCATAAAAGAC+AGG | - | chr1_3:1227304-1227323 | None:intergenic | 40.0% | |
| ! | CCTGTCTTTTATGGTGATCT+TGG | + | chr1_3:1227301-1227320 | Msa0095850:CDS | 40.0% |
| GTGATCTTGGAAGTCATCAT+AGG | + | chr1_3:1227314-1227333 | Msa0095850:CDS | 40.0% | |
| AAGCTATATCGGAGGGTTTA+TGG | + | chr1_3:1227730-1227749 | Msa0095850:intron | 40.0% | |
| TGTTCATTTCCTTGCATTGC+AGG | + | chr1_3:1227878-1227897 | Msa0095850:intron | 40.0% | |
| AACTCAGCAACAACAACATC+TGG | + | chr1_3:1227956-1227975 | Msa0095850:CDS | 40.0% | |
| !! | TCATTGTGTTGCTTCGCAAA+CGG | + | chr1_3:1227989-1228008 | Msa0095850:CDS | 40.0% |
| AAGTTCAATTGGGAACCCTA+AGG | + | chr1_3:1228347-1228366 | Msa0095850:CDS | 40.0% | |
| AGTTCAATTGGGAACCCTAA+GGG | + | chr1_3:1228348-1228367 | Msa0095850:CDS | 40.0% | |
| !! | TCTCTTCAGCCTCCATTTTT+AGG | + | chr1_3:1228499-1228518 | Msa0095850:intron | 40.0% |
| ATGCACAAAAGATTGTGGTG+TGG | - | chr1_3:1228595-1228614 | None:intergenic | 40.0% | |
| !! | ATAGTTTCTGGCCTCAAACA+AGG | + | chr1_3:1228613-1228632 | Msa0095850:CDS | 40.0% |
| GAGGTAGTAGGTAGGATAAT+AGG | - | chr1_3:1228670-1228689 | None:intergenic | 40.0% | |
| !!! | GCAGAGTTTTGGAACTCTAT+TGG | + | chr1_3:1228841-1228860 | Msa0095850:intron | 40.0% |
| AGTAACTGAAAACCCTGGAA+AGG | - | chr1_3:1228908-1228927 | None:intergenic | 40.0% | |
| TGAGGAAGGAAAAGAAGGTA+GGG | - | chr1_3:1228948-1228967 | None:intergenic | 40.0% | |
| TTGAGGAAGGAAAAGAAGGT+AGG | - | chr1_3:1228949-1228968 | None:intergenic | 40.0% | |
| TCTACCCAATGCCTATCTAT+GGG | + | chr1_3:1229046-1229065 | Msa0095850:CDS | 40.0% | |
| CCATTGAGTATACCTGTGAT+TGG | - | chr1_3:1229079-1229098 | None:intergenic | 40.0% | |
| CCAATCACAGGTATACTCAA+TGG | + | chr1_3:1229076-1229095 | Msa0095850:intron | 40.0% | |
| GCAGAAGACTTAATGGAGTT+TGG | + | chr1_3:1229311-1229330 | Msa0095850:CDS | 40.0% | |
| GTTTGGACAAAAGGTTGTTC+TGG | + | chr1_3:1229328-1229347 | Msa0095850:CDS | 40.0% | |
| ! | GATGCACTTTTCATTCCTGA+AGG | + | chr1_3:1229359-1229378 | Msa0095850:CDS | 40.0% |
| ! | CACTTTTCATTCCTGAAGGA+TGG | + | chr1_3:1229363-1229382 | Msa0095850:CDS | 40.0% |
| TTCATTCCTGAAGGATGGTA+AGG | + | chr1_3:1229368-1229387 | Msa0095850:intron | 40.0% | |
| TATAGACCTTACCATCCTTC+AGG | - | chr1_3:1229377-1229396 | None:intergenic | 40.0% | |
| GTGATAAGCCTTTCTGTTTC+TGG | + | chr1_3:1229413-1229432 | Msa0095850:intron | 40.0% | |
| TCTTCCATATTTGGCAGACA+TGG | + | chr1_3:1229448-1229467 | Msa0095850:intron | 40.0% | |
| ATATTTGGCAGACATGGACA+GGG | + | chr1_3:1229454-1229473 | Msa0095850:intron | 40.0% | |
| !! | GTTTTCTGGGAATTCTGTAC+TGG | + | chr1_3:1229518-1229537 | Msa0095850:intron | 40.0% |
| AATCTAGTGCAGAACCTCTA+TGG | - | chr1_3:1229623-1229642 | None:intergenic | 40.0% | |
| TGTACGGTTAGACAGTTACA+GGG | - | chr1_3:1229651-1229670 | None:intergenic | 40.0% | |
| TTGTACGGTTAGACAGTTAC+AGG | - | chr1_3:1229652-1229671 | None:intergenic | 40.0% | |
| TAACTGTCTAACCGTACAAC+TGG | + | chr1_3:1229653-1229672 | Msa0095850:intron | 40.0% | |
| CGAAGATATAGGAGTGAAAC+AGG | - | chr1_3:1230143-1230162 | None:intergenic | 40.0% | |
| AATGAAAAGGACCATGATCC+TGG | - | chr1_3:1230190-1230209 | None:intergenic | 40.0% | |
| CCTTACAAAACCGTTTCGTA+AGG | - | chr1_3:1230455-1230474 | None:intergenic | 40.0% | |
| !! | CCTTACGAAACGGTTTTGTA+AGG | + | chr1_3:1230452-1230471 | Msa0095850:intron | 40.0% |
| AGGACATATCACATCCGATT+TGG | + | chr1_3:1230508-1230527 | Msa0095850:intron | 40.0% | |
| GGACATATCACATCCGATTT+GGG | + | chr1_3:1230509-1230528 | Msa0095850:intron | 40.0% | |
| ! | GACATATCACATCCGATTTG+GGG | + | chr1_3:1230510-1230529 | Msa0095850:intron | 40.0% |
| GTGTGATAAGATCCCCAAAT+CGG | - | chr1_3:1230525-1230544 | None:intergenic | 40.0% | |
| CAGGTAACACTTCGATATTC+AGG | - | chr1_3:1230563-1230582 | None:intergenic | 40.0% | |
| ! | ATATCGAAGTGTTACCTGAG+TGG | + | chr1_3:1230565-1230584 | Msa0095850:intron | 40.0% |
| TTGAGACTTGAGTCTCATAC+TGG | - | chr1_3:1230735-1230754 | None:intergenic | 40.0% | |
| TCCTACTGCAAAATACGGTT+GGG | - | chr1_3:1230783-1230802 | None:intergenic | 40.0% | |
| ATCCTACTGCAAAATACGGT+TGG | - | chr1_3:1230784-1230803 | None:intergenic | 40.0% | |
| AATCGTCACTATCTACTTGG+TGG | - | chr1_3:1230960-1230979 | None:intergenic | 40.0% | |
| CATCATGCAAGACATTGTGT+TGG | - | chr1_3:1231013-1231032 | None:intergenic | 40.0% | |
| CAACACAATGTCTTGCATGA+TGG | + | chr1_3:1231011-1231030 | Msa0095850:CDS | 40.0% | |
| ! | GTCTTGCATGATGGAACATA+TGG | + | chr1_3:1231020-1231039 | Msa0095850:CDS | 40.0% |
| TCATTTGCCTGTTGATCCAA+TGG | + | chr1_3:1231173-1231192 | Msa0095850:intron | 40.0% | |
| AATGCATCCATTGGATCAAC+AGG | - | chr1_3:1231183-1231202 | None:intergenic | 40.0% | |
| ! | TTCATTTGTATTGGTGGGGT+TGG | + | chr1_3:1231293-1231312 | Msa0095850:intron | 40.0% |
| CAAGAGAGAAAGGAACATCA+TGG | - | chr1_3:1231463-1231482 | None:intergenic | 40.0% | |
| ATGTTCCTTTCTCTCTTGTG+TGG | + | chr1_3:1231465-1231484 | Msa0095850:intron | 40.0% | |
| !! | TTGCAAATGGTTGATGAAGC+AGG | + | chr1_3:1231545-1231564 | Msa0095850:intron | 40.0% |
| TTTCTGAGTGTGAAGAATGG+AGG | + | chr1_3:1231781-1231800 | Msa0095850:intron | 40.0% | |
| TTCTGAGTGTGAAGAATGGA+GGG | + | chr1_3:1231782-1231801 | Msa0095850:intron | 40.0% | |
| GACCAGCAACTGCTAAAATT+GGG | + | chr1_3:1231931-1231950 | Msa0095850:CDS | 40.0% | |
| ACCAGCAACTGCTAAAATTG+GGG | + | chr1_3:1231932-1231951 | Msa0095850:CDS | 40.0% | |
| CAACTGCTAAAATTGGGGAT+GGG | + | chr1_3:1231937-1231956 | Msa0095850:CDS | 40.0% | |
| AATTGGGGATGGGAAAAACT+AGG | + | chr1_3:1231947-1231966 | Msa0095850:CDS | 40.0% | |
| ! | CAATTTTCATCAGCGTGATC+TGG | - | chr1_3:1232132-1232151 | None:intergenic | 40.0% |
| CAGTCAGATGTTGAAAGGAA+TGG | + | chr1_3:1232152-1232171 | Msa0095850:CDS | 40.0% | |
| TTGACAGTGATTGTTGATCC+TGG | - | chr1_3:1232290-1232309 | None:intergenic | 40.0% | |
| ATCCAGTTGCCAAAATTCTC+TGG | + | chr1_3:1232382-1232401 | Msa0095850:CDS | 40.0% | |
| !! | TTCCAGAGAATTTTGGCAAC+TGG | - | chr1_3:1232387-1232406 | None:intergenic | 40.0% |
| CTTCTTTGTACTGTGAACCA+TGG | + | chr1_3:1232486-1232505 | Msa0095850:intron | 40.0% | |
| GGGAGACCAATGAAAATTGT+TGG | + | chr1_3:1232796-1232815 | Msa0095850:intron | 40.0% | |
| !! | TGTTGGCTCAACCATTAAGA+AGG | + | chr1_3:1232813-1232832 | Msa0095850:intron | 40.0% |
| ! | GTATGACTGATTCCAACTAG+TGG | + | chr1_3:1232908-1232927 | Msa0095850:intron | 40.0% |
| TGATTCCAACTAGTGGGAAA+AGG | + | chr1_3:1232915-1232934 | Msa0095850:intron | 40.0% | |
| ! | TAACACCTTTTCCCACTAGT+TGG | - | chr1_3:1232923-1232942 | None:intergenic | 40.0% |
| CCACGGCATGATTAAATACA+AGG | - | chr1_3:1233085-1233104 | None:intergenic | 40.0% | |
| CCTTGTATTTAATCATGCCG+TGG | + | chr1_3:1233082-1233101 | Msa0095850:intron | 40.0% | |
| CAACTTCCCAAGAACTTTAG+AGG | + | chr1_3:1233175-1233194 | Msa0095850:CDS | 40.0% | |
| TGCATGTACTATCACCAGTT+GGG | + | chr1_3:1233207-1233226 | Msa0095850:CDS | 40.0% | |
| !! | TTGGTCGCCTTTTTAATTGC+AGG | + | chr1_3:1233362-1233381 | Msa0095850:intron | 40.0% |
| TTGCAGGAATAGATTCTACG+AGG | + | chr1_3:1233378-1233397 | Msa0095850:intron | 40.0% | |
| ! | GAATTCTATTCTGAAGGGGA+AGG | + | chr1_3:1233438-1233457 | Msa0095850:CDS | 40.0% |
| TTCGTCCATATTTACCCTTC+TGG | + | chr1_3:1233523-1233542 | Msa0095850:intron | 40.0% | |
| ACACACCAGAAGGGTAAATA+TGG | - | chr1_3:1233531-1233550 | None:intergenic | 40.0% | |
| TCTAAGTACACACACCAGAA+GGG | - | chr1_3:1233540-1233559 | None:intergenic | 40.0% | |
| GTGTACTTAGAGTCACATGA+AGG | + | chr1_3:1233549-1233568 | Msa0095850:intron | 40.0% | |
| AAGGAAGAGAGAAATGCACA+CGG | + | chr1_3:1233991-1234010 | Msa0095850:intron | 40.0% | |
| ! | GGGTTCACTCACAAAAGTTT+TGG | + | chr1_3:1234024-1234043 | Msa0095850:intron | 40.0% |
| ! | CCCTGAAGCATTCTTTGTAT+TGG | + | chr1_3:1234125-1234144 | Msa0095850:intron | 40.0% |
| CTAGGGCAAAGAACATTGTA+AGG | - | chr1_3:1234170-1234189 | None:intergenic | 40.0% | |
| CAATGTTCTTTGCCCTAGAT+AGG | + | chr1_3:1234172-1234191 | Msa0095850:intron | 40.0% | |
| TTTATTGCGTGTTAGCTGAG+AGG | - | chr1_3:1234223-1234242 | None:intergenic | 40.0% | |
| !! | GTGAAGGTTGTTTTCTCCAT+AGG | - | chr1_3:1234389-1234408 | None:intergenic | 40.0% |
| TTTGAGGGGAGGAAAAGAAT+TGG | - | chr1_3:1234437-1234456 | None:intergenic | 40.0% | |
| ATCAGTTCCATACAGTGGAA+AGG | - | chr1_3:1234470-1234489 | None:intergenic | 40.0% | |
| CAGAATGGGGAATAACAGAA+CGG | - | chr1_3:1234530-1234549 | None:intergenic | 40.0% | |
| AACAACGGCAACATCAGAAT+GGG | - | chr1_3:1234544-1234563 | None:intergenic | 40.0% | |
| TAACAACGGCAACATCAGAA+TGG | - | chr1_3:1234545-1234564 | None:intergenic | 40.0% | |
| AACATTGGGCCACAAAGAAT+GGG | - | chr1_3:1234597-1234616 | None:intergenic | 40.0% | |
| TGGTATGGTCAAGTATTCCA+AGG | - | chr1_3:1234748-1234767 | None:intergenic | 40.0% | |
| CAAGAGTAGTGCATTGTACA+TGG | - | chr1_3:1235227-1235246 | None:intergenic | 40.0% | |
| AAAGTCTCAATGCACATGCA+GGG | - | chr1_3:1235577-1235596 | None:intergenic | 40.0% | |
| TAAAGTCTCAATGCACATGC+AGG | - | chr1_3:1235578-1235597 | None:intergenic | 40.0% | |
| ! | AATCTAGAATGCTCAAAGCC+AGG | + | chr1_3:1235859-1235878 | Msa0095850:CDS | 40.0% |
| ! | ATCTAGAATGCTCAAAGCCA+GGG | + | chr1_3:1235860-1235879 | Msa0095850:CDS | 40.0% |
| !! | TTTATTCTTCGGAGGTACCT+TGG | - | chr1_3:1235929-1235948 | None:intergenic | 40.0% |
| GATCCAACGAAGAAATGCTT+TGG | - | chr1_3:1235969-1235988 | None:intergenic | 40.0% | |
| GTATCAAATACATAGGGGCT+AGG | - | chr1_3:1236089-1236108 | None:intergenic | 40.0% | |
| GACTCGAAGTCGTTAGATGT+GGG | - | chr1_3:1227026-1227045 | None:intergenic | 45.0% | |
| AGACTCGAAGTCGTTAGATG+TGG | - | chr1_3:1227027-1227046 | None:intergenic | 45.0% | |
| TATGCGGTTGCACCAAAACT+TGG | + | chr1_3:1227179-1227198 | Msa0095850:CDS | 45.0% | |
| TTATGGAATCCACGGAACGA+TGG | + | chr1_3:1227214-1227233 | Msa0095850:CDS | 45.0% | |
| ! | TCGTCTGCACCTGTCTTTTA+TGG | + | chr1_3:1227292-1227311 | Msa0095850:CDS | 45.0% |
| !! | AGTTTTTCGGCCCGTTTGTT+TGG | + | chr1_3:1227433-1227452 | Msa0095850:intron | 45.0% |
| TCAGCAACAACAACATCTGG+AGG | + | chr1_3:1227959-1227978 | Msa0095850:CDS | 45.0% | |
| TTTAGTGCGTGGATGGAACA+AGG | - | chr1_3:1228212-1228231 | None:intergenic | 45.0% | |
| CGTCTGAATGTCTTCCCTTA+GGG | - | chr1_3:1228365-1228384 | None:intergenic | 45.0% | |
| CCTAAGGGAAGACATTCAGA+CGG | + | chr1_3:1228363-1228382 | Msa0095850:CDS | 45.0% | |
| GTGGTGAAAAAACCCATGCT+GGG | - | chr1_3:1228692-1228711 | None:intergenic | 45.0% | |
| AGTGGTGAAAAAACCCATGC+TGG | - | chr1_3:1228693-1228712 | None:intergenic | 45.0% | |
| TTTCACCACTGCAGAAATGC+AGG | + | chr1_3:1228703-1228722 | Msa0095850:intron | 45.0% | |
| GAGGAAGGAAAAGAAGGTAG+GGG | - | chr1_3:1228947-1228966 | None:intergenic | 45.0% | |
| AGGCTTGAGGAAGGAAAAGA+AGG | - | chr1_3:1228953-1228972 | None:intergenic | 45.0% | |
| !! | AATGGATTGAGGCTTGAGGA+AGG | - | chr1_3:1228962-1228981 | None:intergenic | 45.0% |
| !! | CAGAAATGGATTGAGGCTTG+AGG | - | chr1_3:1228966-1228985 | None:intergenic | 45.0% |
| !! | ATAGGCATTGGGTAGAGTGA+GGG | - | chr1_3:1229042-1229061 | None:intergenic | 45.0% |
| CTCTACCCAATGCCTATCTA+TGG | + | chr1_3:1229045-1229064 | Msa0095850:CDS | 45.0% | |
| CTACCCAATGCCTATCTATG+GGG | + | chr1_3:1229047-1229066 | Msa0095850:CDS | 45.0% | |
| CTTCCCCATAGATAGGCATT+GGG | - | chr1_3:1229053-1229072 | None:intergenic | 45.0% | |
| TTGGAAGCTTCCCCATAGAT+AGG | - | chr1_3:1229060-1229079 | None:intergenic | 45.0% | |
| TCCAAGGGCAGAAGACTTAA+TGG | + | chr1_3:1229304-1229323 | Msa0095850:CDS | 45.0% | |
| TCCATTAAGTCTTCTGCCCT+TGG | - | chr1_3:1229308-1229327 | None:intergenic | 45.0% | |
| TGGACAAAAGGTTGTTCTGG+AGG | + | chr1_3:1229331-1229350 | Msa0095850:CDS | 45.0% | |
| CTGTCCATGTCTGCCAAATA+TGG | - | chr1_3:1229455-1229474 | None:intergenic | 45.0% | |
| CATATTTGGCAGACATGGAC+AGG | + | chr1_3:1229453-1229472 | Msa0095850:intron | 45.0% | |
| AGACATGGACAGGGAAACTT+GGG | + | chr1_3:1229463-1229482 | Msa0095850:intron | 45.0% | |
| GATCAGCATGATCACCATAG+AGG | + | chr1_3:1229606-1229625 | Msa0095850:intron | 45.0% | |
| AATGGTGACTGACACACTAG+AGG | + | chr1_3:1229696-1229715 | Msa0095850:intron | 45.0% | |
| ACAGAGATGCAAAAGCTCTC+TGG | + | chr1_3:1229810-1229829 | Msa0095850:intron | 45.0% | |
| TTCTGTGTCAGCACAGCATT+GGG | - | chr1_3:1229881-1229900 | None:intergenic | 45.0% | |
| ATTCTGTGTCAGCACAGCAT+TGG | - | chr1_3:1229882-1229901 | None:intergenic | 45.0% | |
| ! | GTCATCTTTTCCTTGACTCC+AGG | + | chr1_3:1230169-1230188 | Msa0095850:intron | 45.0% |
| TTTCCTTGACTCCAGGATCA+TGG | + | chr1_3:1230176-1230195 | Msa0095850:intron | 45.0% | |
| ! | ATTCAGGTTTGAGCGTGAGA+GGG | - | chr1_3:1230547-1230566 | None:intergenic | 45.0% |
| ! | TATTCAGGTTTGAGCGTGAG+AGG | - | chr1_3:1230548-1230567 | None:intergenic | 45.0% |
| ACGAGTGACCCAATGAATCT+TGG | + | chr1_3:1230594-1230613 | Msa0095850:intron | 45.0% | |
| CTGGAGGTGATCATGTGATA+AGG | - | chr1_3:1230716-1230735 | None:intergenic | 45.0% | |
| AGACTTGAGTCTCATACTGG+AGG | - | chr1_3:1230732-1230751 | None:intergenic | 45.0% | |
| TACTGCAAAATACGGTTGGG+TGG | - | chr1_3:1230780-1230799 | None:intergenic | 45.0% | |
| ! | ACCCAACCGTATTTTGCAGT+AGG | + | chr1_3:1230779-1230798 | Msa0095850:intron | 45.0% |
| CGCAGAATATTGAGACGGTA+TGG | + | chr1_3:1231057-1231076 | Msa0095850:CDS | 45.0% | |
| GATCCAATGGATGCATTCGA+AGG | + | chr1_3:1231186-1231205 | Msa0095850:intron | 45.0% | |
| CAACCTTCGAATGCATCCAT+TGG | - | chr1_3:1231192-1231211 | None:intergenic | 45.0% | |
| TGCTACCACACAAGAGAGAA+AGG | - | chr1_3:1231473-1231492 | None:intergenic | 45.0% | |
| TCTGAGTGTGAAGAATGGAG+GGG | + | chr1_3:1231783-1231802 | Msa0095850:intron | 45.0% | |
| GGACCAGCAACTGCTAAAAT+TGG | + | chr1_3:1231930-1231949 | Msa0095850:intron | 45.0% | |
| !! | TCCCCAATTTTAGCAGTTGC+TGG | - | chr1_3:1231936-1231955 | None:intergenic | 45.0% |
| GCAACTGCTAAAATTGGGGA+TGG | + | chr1_3:1231936-1231955 | Msa0095850:CDS | 45.0% | |
| GCTTCATGAACTCGTGTCTT+TGG | + | chr1_3:1232242-1232261 | Msa0095850:CDS | 45.0% | |
| CAAGTAGTTCCCTTTCAAGC+AGG | - | chr1_3:1232717-1232736 | None:intergenic | 45.0% | |
| ! | ATGCTTGGGCTAGATGAGAT+TGG | + | chr1_3:1232998-1233017 | Msa0095850:intron | 45.0% |
| ! | TGCTTGGGCTAGATGAGATT+GGG | + | chr1_3:1232999-1233018 | Msa0095850:intron | 45.0% |
| !! | CGAGAGCCTCTAAAGTTCTT+GGG | - | chr1_3:1233184-1233203 | None:intergenic | 45.0% |
| !! | ACGAGAGCCTCTAAAGTTCT+TGG | - | chr1_3:1233185-1233204 | None:intergenic | 45.0% |
| CTGCATGTACTATCACCAGT+TGG | + | chr1_3:1233206-1233225 | Msa0095850:CDS | 45.0% | |
| GCATGTACTATCACCAGTTG+GGG | + | chr1_3:1233208-1233227 | Msa0095850:CDS | 45.0% | |
| TTGGGGCTGAAGTTCTTACA+CGG | + | chr1_3:1233225-1233244 | Msa0095850:CDS | 45.0% | |
| GAAGGAGCTATTCACACAAC+AGG | + | chr1_3:1233456-1233475 | Msa0095850:CDS | 45.0% | |
| CTCTAAGTACACACACCAGA+AGG | - | chr1_3:1233541-1233560 | None:intergenic | 45.0% | |
| CTGATGGAATGACACATCCT+AGG | + | chr1_3:1233711-1233730 | Msa0095850:intron | 45.0% | |
| !! | TTGTAAGGTATTGCACGGAG+AGG | - | chr1_3:1234155-1234174 | None:intergenic | 45.0% |
| !! | TTAGCTGAGAGGTGTTACTG+GGG | - | chr1_3:1234212-1234231 | None:intergenic | 45.0% |
| !! | GTTAGCTGAGAGGTGTTACT+GGG | - | chr1_3:1234213-1234232 | None:intergenic | 45.0% |
| !! | TGTTAGCTGAGAGGTGTTAC+TGG | - | chr1_3:1234214-1234233 | None:intergenic | 45.0% |
| GGAGAAAACAACCTTCACCA+AGG | + | chr1_3:1234391-1234410 | Msa0095850:intron | 45.0% | |
| GAAAAGCTTTGCCTTGGTGA+AGG | - | chr1_3:1234405-1234424 | None:intergenic | 45.0% | |
| ! | GTAACGGAAAAGCTTTGCCT+TGG | - | chr1_3:1234411-1234430 | None:intergenic | 45.0% |
| TTCCATACAGTGGAAAGGTG+GGG | - | chr1_3:1234465-1234484 | None:intergenic | 45.0% | |
| GTTCCATACAGTGGAAAGGT+GGG | - | chr1_3:1234466-1234485 | None:intergenic | 45.0% | |
| AGTTCCATACAGTGGAAAGG+TGG | - | chr1_3:1234467-1234486 | None:intergenic | 45.0% | |
| AGGGAATCAGTTCCATACAG+TGG | - | chr1_3:1234475-1234494 | None:intergenic | 45.0% | |
| ATGTGTCAATTGGAGAGTGG+AGG | - | chr1_3:1234505-1234524 | None:intergenic | 45.0% | |
| GACATGTGTCAATTGGAGAG+TGG | - | chr1_3:1234508-1234527 | None:intergenic | 45.0% | |
| CAGAACGGACATGTGTCAAT+TGG | - | chr1_3:1234515-1234534 | None:intergenic | 45.0% | |
| ACAACGGCAACATCAGAATG+GGG | - | chr1_3:1234543-1234562 | None:intergenic | 45.0% | |
| GAACATTGGGCCACAAAGAA+TGG | - | chr1_3:1234598-1234617 | None:intergenic | 45.0% | |
| AGGAAAATAAGGGGGAGCAA+GGG | - | chr1_3:1234659-1234678 | None:intergenic | 45.0% | |
| AAGGAAAATAAGGGGGAGCA+AGG | - | chr1_3:1234660-1234679 | None:intergenic | 45.0% | |
| GTCAAGTATTCCAAGGCAAG+TGG | - | chr1_3:1234741-1234760 | None:intergenic | 45.0% | |
| CATGCACTGAAACAGTGATG+AGG | - | chr1_3:1235536-1235555 | None:intergenic | 45.0% | |
| TGTTTCAGTGCATGAGTCTC+TGG | + | chr1_3:1235542-1235561 | Msa0095850:intron | 45.0% | |
| ! | TCTAGAATGCTCAAAGCCAG+GGG | + | chr1_3:1235861-1235880 | Msa0095850:CDS | 45.0% |
| ATGAATGAATTGGCCCACCA+AGG | + | chr1_3:1235909-1235928 | Msa0095850:three_prime_UTR | 45.0% | |
| CGTAACAGCAGCACCAACAT+TGG | - | chr1_3:1226883-1226902 | None:intergenic | 50.0% | |
| ! | ATCTTCTGTGGTGGAGGCTA+TGG | + | chr1_3:1227264-1227283 | Msa0095850:CDS | 50.0% |
| GTAGAGGAACCTGCAATGCA+AGG | - | chr1_3:1227890-1227909 | None:intergenic | 50.0% | |
| CCGTCTGAATGTCTTCCCTT+AGG | - | chr1_3:1228366-1228385 | None:intergenic | 50.0% | |
| TACCTACTACCTCCCAGCAT+GGG | + | chr1_3:1228677-1228696 | Msa0095850:intron | 50.0% | |
| GTGAAAAAACCCATGCTGGG+AGG | - | chr1_3:1228689-1228708 | None:intergenic | 50.0% | |
| AAGCACCTGCATTTCTGCAG+TGG | - | chr1_3:1228711-1228730 | None:intergenic | 50.0% | |
| ! | TAGAGTGAGGGACTAGCAGA+AGG | - | chr1_3:1229030-1229049 | None:intergenic | 50.0% |
| !! | GATAGGCATTGGGTAGAGTG+AGG | - | chr1_3:1229043-1229062 | None:intergenic | 50.0% |
| GCTTCCCCATAGATAGGCAT+TGG | - | chr1_3:1229054-1229073 | None:intergenic | 50.0% | |
| ATGGGGAAGCTTCCAATCAC+AGG | + | chr1_3:1229064-1229083 | Msa0095850:CDS | 50.0% | |
| !! | CAAAAGGTTGTTCTGGAGGC+AGG | + | chr1_3:1229335-1229354 | Msa0095850:CDS | 50.0% |
| CAGACATGGACAGGGAAACT+TGG | + | chr1_3:1229462-1229481 | Msa0095850:intron | 50.0% | |
| ACTGGCAGTTGCCAGTTGTA+CGG | - | chr1_3:1229667-1229686 | None:intergenic | 50.0% | |
| TGGCAACTGCCAGTTACCTA+GGG | + | chr1_3:1229673-1229692 | Msa0095850:intron | 50.0% | |
| ACTGCCAGTTACCTAGGGAA+TGG | + | chr1_3:1229678-1229697 | Msa0095850:intron | 50.0% | |
| GTCACCATTCCCTAGGTAAC+TGG | - | chr1_3:1229685-1229704 | None:intergenic | 50.0% | |
| TGTGTCAGTCACCATTCCCT+AGG | - | chr1_3:1229692-1229711 | None:intergenic | 50.0% | |
| TTGTAGGTGAGTGATCCCTC+AGG | - | chr1_3:1230104-1230123 | None:intergenic | 50.0% | |
| TCACTCGTTACTGTCCACTC+AGG | - | chr1_3:1230582-1230601 | None:intergenic | 50.0% | |
| GGTCTGATTTAGACACGCAG+AGG | - | chr1_3:1231587-1231606 | None:intergenic | 50.0% | |
| ATTAGAACCTGCTGCAGTCC+AGG | + | chr1_3:1232218-1232237 | Msa0095850:intron | 50.0% | |
| ! | ACACGAGTTCATGAAGCACC+TGG | - | chr1_3:1232239-1232258 | None:intergenic | 50.0% |
| CAGTGATTGTTGATCCTGGC+TGG | - | chr1_3:1232286-1232305 | None:intergenic | 50.0% | |
| TTGTACTGTGAACCATGGCG+TGG | + | chr1_3:1232491-1232510 | Msa0095850:intron | 50.0% | |
| TGTACTGTGAACCATGGCGT+GGG | + | chr1_3:1232492-1232511 | Msa0095850:intron | 50.0% | |
| TAGCTAAAACACCCACGCCA+TGG | - | chr1_3:1232506-1232525 | None:intergenic | 50.0% | |
| GTAAGAACTTCAGCCCCAAC+TGG | - | chr1_3:1233224-1233243 | None:intergenic | 50.0% | |
| CCTAGAGAGGCTCCTATCTA+GGG | - | chr1_3:1234187-1234206 | None:intergenic | 50.0% | |
| CAACTAGACTGCTCTCCCTA+TGG | + | chr1_3:1234370-1234389 | Msa0095850:intron | 50.0% | |
| AAAGGTGGGGGTCTGTTTGA+GGG | - | chr1_3:1234452-1234471 | None:intergenic | 50.0% | |
| TCCATACAGTGGAAAGGTGG+GGG | - | chr1_3:1234464-1234483 | None:intergenic | 50.0% | |
| CCACAAAGAATGGGCCTACA+AGG | - | chr1_3:1234588-1234607 | None:intergenic | 50.0% | |
| CCTTGTAGGCCCATTCTTTG+TGG | + | chr1_3:1234585-1234604 | Msa0095850:intron | 50.0% | |
| TTGTGGCCCAATGTTCTCCT+CGG | + | chr1_3:1234602-1234621 | Msa0095850:intron | 50.0% | |
| AAATAAGGGGGAGCAAGGGT+GGG | - | chr1_3:1234655-1234674 | None:intergenic | 50.0% | |
| AAAATAAGGGGGAGCAAGGG+TGG | - | chr1_3:1234656-1234675 | None:intergenic | 50.0% | |
| !! | ACCGGTGCTGTAAAGAACAC+TGG | + | chr1_3:1235009-1235028 | Msa0095850:intron | 50.0% |
| CCCAGTGTTCTTTACAGCAC+CGG | - | chr1_3:1235013-1235032 | None:intergenic | 50.0% | |
| !! | CCGGTGCTGTAAAGAACACT+GGG | + | chr1_3:1235010-1235029 | Msa0095850:intron | 50.0% |
| AGTGCATGAGTCTCTGGCAT+TGG | + | chr1_3:1235548-1235567 | Msa0095850:intron | 50.0% | |
| TTAGCATCTCATCTGACCCC+TGG | - | chr1_3:1235880-1235899 | None:intergenic | 50.0% | |
| !! | TTCTTCGGAGGTACCTTGGT+GGG | - | chr1_3:1235925-1235944 | None:intergenic | 50.0% |
| !! | ATTCTTCGGAGGTACCTTGG+TGG | - | chr1_3:1235926-1235945 | None:intergenic | 50.0% |
| GATTACTTGCAGGCACGGGT+AGG | + | chr1_3:1227241-1227260 | Msa0095850:CDS | 55.0% | |
| ACGGGTAGGATCTTCTGTGG+TGG | + | chr1_3:1227255-1227274 | Msa0095850:CDS | 55.0% | |
| GGTAGGATCTTCTGTGGTGG+AGG | + | chr1_3:1227258-1227277 | Msa0095850:CDS | 55.0% | |
| CATGCTGGGAGGTAGTAGGT+AGG | - | chr1_3:1228678-1228697 | None:intergenic | 55.0% | |
| CTACCTACTACCTCCCAGCA+TGG | + | chr1_3:1228676-1228695 | Msa0095850:intron | 55.0% | |
| AACCCATGCTGGGAGGTAGT+AGG | - | chr1_3:1228682-1228701 | None:intergenic | 55.0% | |
| ! | AGTGAGGGACTAGCAGAAGG+AGG | - | chr1_3:1229027-1229046 | None:intergenic | 55.0% |
| CTGGCAACTGCCAGTTACCT+AGG | + | chr1_3:1229672-1229691 | Msa0095850:intron | 55.0% | |
| GGACCATGATCCTGGAGTCA+AGG | - | chr1_3:1230182-1230201 | None:intergenic | 55.0% | |
| ! | GTATTGGTGGGGTTGGAGAG+TGG | + | chr1_3:1231300-1231319 | Msa0095850:intron | 55.0% |
| GTGGGGTTGGAGAGTGGATA+CGG | + | chr1_3:1231306-1231325 | Msa0095850:intron | 55.0% | |
| CTTCAGGGTGAAGCTTGAGC+AGG | - | chr1_3:1234113-1234132 | None:intergenic | 55.0% | |
| CCCTAGATAGGAGCCTCTCT+AGG | + | chr1_3:1234184-1234203 | Msa0095850:intron | 55.0% | |
| GCCTAGAGAGGCTCCTATCT+AGG | - | chr1_3:1234188-1234207 | None:intergenic | 55.0% | |
| TGTTACTGGGGAGCCTAGAG+AGG | - | chr1_3:1234200-1234219 | None:intergenic | 55.0% | |
| AAGGTGGGGGTCTGTTTGAG+GGG | - | chr1_3:1234451-1234470 | None:intergenic | 55.0% | |
| GAAAGGTGGGGGTCTGTTTG+AGG | - | chr1_3:1234453-1234472 | None:intergenic | 55.0% | |
| ACCCCCACCTTTCCACTGTA+TGG | + | chr1_3:1234460-1234479 | Msa0095850:intron | 55.0% | |
| GGAGAGTGGAGGATGAGACA+GGG | - | chr1_3:1234494-1234513 | None:intergenic | 55.0% | |
| TGGAGAGTGGAGGATGAGAC+AGG | - | chr1_3:1234495-1234514 | None:intergenic | 55.0% | |
| CCCAGACCGAGGAGAACATT+GGG | - | chr1_3:1234611-1234630 | None:intergenic | 55.0% | |
| CCCAATGTTCTCCTCGGTCT+GGG | + | chr1_3:1234608-1234627 | Msa0095850:intron | 55.0% | |
| TCCCAGACCGAGGAGAACAT+TGG | - | chr1_3:1234612-1234631 | None:intergenic | 55.0% | |
| TGCTGTATCATCCCAGACCG+AGG | - | chr1_3:1234622-1234641 | None:intergenic | 55.0% | |
| AATAAGGGGGAGCAAGGGTG+GGG | - | chr1_3:1234654-1234673 | None:intergenic | 55.0% | |
| GGCACGGGTAGGATCTTCTG+TGG | + | chr1_3:1227252-1227271 | Msa0095850:CDS | 60.0% | |
| ! | TGAAGCACCTGGACTGCAGC+AGG | - | chr1_3:1232228-1232247 | None:intergenic | 60.0% |
| CAACAGTGTTAGCGCCAGCC+AGG | + | chr1_3:1232269-1232288 | Msa0095850:CDS | 60.0% | |
| GCCCAATGTTCTCCTCGGTC+TGG | + | chr1_3:1234607-1234626 | Msa0095850:intron | 60.0% | |
| GTGGGGGTCTGTTTGAGGGG+AGG | - | chr1_3:1234448-1234467 | None:intergenic | 65.0% | |
| GGAGCAAGGGTGGGGACGTG+GGG | - | chr1_3:1234646-1234665 | None:intergenic | 70.0% | |
| GGGAGCAAGGGTGGGGACGT+GGG | - | chr1_3:1234647-1234666 | None:intergenic | 70.0% | |
| GGGGAGCAAGGGTGGGGACG+TGG | - | chr1_3:1234648-1234667 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1226777 | 1236346 | 1226777 | ID=Msa0095850;Name=Msa0095850 |
| chr1_3 | mRNA | 1226777 | 1236346 | 1226777 | ID=Msa0095850-mRNA-1;Parent=Msa0095850;Name=Msa0095850-mRNA-1;_AED=0.16;_eAED=0.16;_QI=207|0.84|0.78|1|0.76|0.78|14|455|536 |
| chr1_3 | exon | 1226777 | 1227073 | 1226777 | ID=Msa0095850-mRNA-1:exon:194;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1227175 | 1227336 | 1227175 | ID=Msa0095850-mRNA-1:exon:195;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1227900 | 1228073 | 1227900 | ID=Msa0095850-mRNA-1:exon:196;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1228316 | 1228384 | 1228316 | ID=Msa0095850-mRNA-1:exon:197;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1228508 | 1228634 | 1228508 | ID=Msa0095850-mRNA-1:exon:198;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1229013 | 1229085 | 1229013 | ID=Msa0095850-mRNA-1:exon:199;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1229268 | 1229384 | 1229268 | ID=Msa0095850-mRNA-1:exon:200;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1230954 | 1231086 | 1230954 | ID=Msa0095850-mRNA-1:exon:201;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1231931 | 1232006 | 1231931 | ID=Msa0095850-mRNA-1:exon:202;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1232133 | 1232233 | 1232133 | ID=Msa0095850-mRNA-1:exon:203;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1232240 | 1232449 | 1232240 | ID=Msa0095850-mRNA-1:exon:204;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1233173 | 1233288 | 1233173 | ID=Msa0095850-mRNA-1:exon:205;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1233384 | 1233477 | 1233384 | ID=Msa0095850-mRNA-1:exon:206;Parent=Msa0095850-mRNA-1 |
| chr1_3 | exon | 1235823 | 1236346 | 1235823 | ID=Msa0095850-mRNA-1:exon:207;Parent=Msa0095850-mRNA-1 |
| chr1_3 | five_prime_UTR | 1226777 | 1226983 | 1226777 | ID=Msa0095850-mRNA-1:five_prime_utr;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1226984 | 1227073 | 1226984 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1227175 | 1227336 | 1227175 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1227900 | 1228073 | 1227900 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1228316 | 1228384 | 1228316 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1228508 | 1228634 | 1228508 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1229013 | 1229085 | 1229013 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1229268 | 1229384 | 1229268 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1230954 | 1231086 | 1230954 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1231931 | 1232006 | 1231931 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1232133 | 1232233 | 1232133 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1232240 | 1232449 | 1232240 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1233173 | 1233288 | 1233173 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1233384 | 1233477 | 1233384 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | CDS | 1235823 | 1235891 | 1235823 | ID=Msa0095850-mRNA-1:cds;Parent=Msa0095850-mRNA-1 |
| chr1_3 | three_prime_UTR | 1235892 | 1236346 | 1235892 | ID=Msa0095850-mRNA-1:three_prime_utr;Parent=Msa0095850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
