Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095860 | Msa0446950 | 0.857131 | 2.011989e-62 | -8.615850e-47 |
| Msa0095860 | Msa0612000 | 0.820178 | 7.868359e-53 | -8.615850e-47 |
| Msa0095860 | Msa0820720 | 0.870630 | 1.262034e-66 | -8.615850e-47 |
| Msa0095860 | Msa1042690 | 0.853349 | 2.534743e-61 | -8.615850e-47 |
| Msa0095860 | Msa1297160 | 0.848944 | 4.436958e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTTGTGAAGATAAA+AGG | 0.212182 | 1_3:+1244064 | None:intergenic |
| TTGATTAAGAAGATTGATAA+AGG | 0.347680 | 1_3:-1245419 | Msa0095860:CDS |
| TTATCAATCTTCTTAATCAA+TGG | 0.348218 | 1_3:+1245422 | None:intergenic |
| GTGATCTCATCCAGGATGAT+AGG | 0.356626 | 1_3:+1243346 | None:intergenic |
| CCAGGATGATAGGGTGGATA+GGG | 0.403549 | 1_3:+1243356 | None:intergenic |
| ATGTTGAAGGAGGCAAGAAC+TGG | 0.403774 | 1_3:-1243459 | Msa0095860:CDS |
| TCTTATAAAATCATCATGAT+AGG | 0.434799 | 1_3:+1243284 | None:intergenic |
| CATACTACCTCTGCTAAGAT+TGG | 0.469905 | 1_3:-1243391 | Msa0095860:CDS |
| GCAAGAGGTGTGATGGCAGC+AGG | 0.472865 | 1_3:+1243415 | None:intergenic |
| CCCTATCCACCCTATCATCC+TGG | 0.477480 | 1_3:-1243356 | Msa0095860:CDS |
| ACCATGTTGCAGAATGTTGA+AGG | 0.481802 | 1_3:-1243472 | Msa0095860:CDS |
| ATTCTGCAACATGGTGGAAG+GGG | 0.513075 | 1_3:+1243480 | None:intergenic |
| AGAAGATTGATAAAGGAAGA+AGG | 0.523461 | 1_3:-1245412 | Msa0095860:intron |
| TTGCAGGAGTGATCTCATCC+AGG | 0.524797 | 1_3:+1243338 | None:intergenic |
| TGTCTTTGAACAACAAGTGC+AGG | 0.532648 | 1_3:-1244098 | Msa0095860:CDS |
| AAAATCATCATGATAGGAAG+AGG | 0.535692 | 1_3:+1243290 | None:intergenic |
| ACATTCTGCAACATGGTGGA+AGG | 0.539324 | 1_3:+1243478 | None:intergenic |
| TGATCTCATCCAGGATGATA+GGG | 0.550931 | 1_3:+1243347 | None:intergenic |
| TCCTTCAACATTCTGCAACA+TGG | 0.556193 | 1_3:+1243471 | None:intergenic |
| CATTCTGCAACATGGTGGAA+GGG | 0.560478 | 1_3:+1243479 | None:intergenic |
| AGTATGAGCAAGAGGTGTGA+TGG | 0.566077 | 1_3:+1243408 | None:intergenic |
| TCCAGGATGATAGGGTGGAT+AGG | 0.585429 | 1_3:+1243355 | None:intergenic |
| TGATGGCAGCAGGAGTAAGT+TGG | 0.597392 | 1_3:+1243425 | None:intergenic |
| GCAGAGGTAGTATGAGCAAG+AGG | 0.599567 | 1_3:+1243400 | None:intergenic |
| TGTTGAAGGAGGCAAGAACT+GGG | 0.613431 | 1_3:-1243458 | Msa0095860:CDS |
| CAGGATGATAGGGTGGATAG+GGG | 0.620934 | 1_3:+1243357 | None:intergenic |
| TTCAACATTCTGCAACATGG+TGG | 0.658953 | 1_3:+1243474 | None:intergenic |
| TCTCATCCAGGATGATAGGG+TGG | 0.663515 | 1_3:+1243350 | None:intergenic |
| ACTTGAACCAATCTTAGCAG+AGG | 0.665354 | 1_3:+1243384 | None:intergenic |
| ATGTTGCAGAATGTTGAAGG+AGG | 0.685850 | 1_3:-1243469 | Msa0095860:CDS |
| TATGATTTAGGACACAAATG+TGG | 0.703373 | 1_3:-1243672 | Msa0095860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATTAATTCTTTTT+TGG | - | chr1_3:1243669-1243688 | Msa0095860:intron | 10.0% |
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr1_3:1243964-1243983 | Msa0095860:intron | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr1_3:1243996-1244015 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr1_3:1244084-1244103 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr1_3:1244175-1244194 | Msa0095860:intron | 10.0% |
| !!! | AACAATAATTAATTCTTTTT+TGG | - | chr1_3:1243669-1243688 | Msa0095860:intron | 10.0% |
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr1_3:1243964-1243983 | Msa0095860:intron | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr1_3:1243996-1244015 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr1_3:1244084-1244103 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr1_3:1244175-1244194 | Msa0095860:intron | 10.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr1_3:1243999-1244018 | Msa0095860:intron | 15.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr1_3:1243999-1244018 | Msa0095860:intron | 15.0% |
| !! | TTATCAATCTTCTTAATCAA+TGG | + | chr1_3:1243315-1243334 | None:intergenic | 20.0% |
| !! | TTGATTAAGAAGATTGATAA+AGG | - | chr1_3:1243315-1243334 | Msa0095860:CDS | 20.0% |
| !! | TATTTGAAGAATATTGAGTA+TGG | + | chr1_3:1243520-1243539 | None:intergenic | 20.0% |
| !!! | TACACAACTTTTCATTTTTT+TGG | - | chr1_3:1243554-1243573 | Msa0095860:intron | 20.0% |
| !!! | ACACAACTTTTCATTTTTTT+GGG | - | chr1_3:1243555-1243574 | Msa0095860:intron | 20.0% |
| !! | AGAAAAATAGACAAGAAATA+AGG | - | chr1_3:1243583-1243602 | Msa0095860:intron | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr1_3:1243677-1243696 | Msa0095860:intron | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr1_3:1243933-1243952 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr1_3:1244290-1244309 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr1_3:1244289-1244308 | Msa0095860:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr1_3:1244751-1244770 | Msa0095860:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr1_3:1244798-1244817 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAGCAGTTGA+TGG | + | chr1_3:1244836-1244855 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr1_3:1245171-1245190 | None:intergenic | 20.0% |
| !! | TTATCAATCTTCTTAATCAA+TGG | + | chr1_3:1243315-1243334 | None:intergenic | 20.0% |
| !! | TTGATTAAGAAGATTGATAA+AGG | - | chr1_3:1243315-1243334 | Msa0095860:CDS | 20.0% |
| !! | TATTTGAAGAATATTGAGTA+TGG | + | chr1_3:1243520-1243539 | None:intergenic | 20.0% |
| !!! | TACACAACTTTTCATTTTTT+TGG | - | chr1_3:1243554-1243573 | Msa0095860:intron | 20.0% |
| !!! | ACACAACTTTTCATTTTTTT+GGG | - | chr1_3:1243555-1243574 | Msa0095860:intron | 20.0% |
| !! | AGAAAAATAGACAAGAAATA+AGG | - | chr1_3:1243583-1243602 | Msa0095860:intron | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr1_3:1243677-1243696 | Msa0095860:intron | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr1_3:1243933-1243952 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr1_3:1244290-1244309 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr1_3:1244289-1244308 | Msa0095860:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr1_3:1244751-1244770 | Msa0095860:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr1_3:1244798-1244817 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAGCAGTTGA+TGG | + | chr1_3:1244836-1244855 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr1_3:1245171-1245190 | None:intergenic | 20.0% |
| !! | TGAAGAAGAAAATTTTGCAA+AGG | + | chr1_3:1243368-1243387 | None:intergenic | 25.0% |
| ! | TAGAATTTGTAATGTTATGC+AGG | + | chr1_3:1243443-1243462 | None:intergenic | 25.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr1_3:1243889-1243908 | Msa0095860:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr1_3:1244002-1244021 | Msa0095860:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr1_3:1244202-1244221 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr1_3:1244282-1244301 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr1_3:1244359-1244378 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr1_3:1244546-1244565 | Msa0095860:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr1_3:1244781-1244800 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr1_3:1244855-1244874 | Msa0095860:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr1_3:1244958-1244977 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr1_3:1245128-1245147 | Msa0095860:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr1_3:1245417-1245436 | Msa0095860:CDS | 25.0% |
| !! | TGAAGAAGAAAATTTTGCAA+AGG | + | chr1_3:1243368-1243387 | None:intergenic | 25.0% |
| ! | TAGAATTTGTAATGTTATGC+AGG | + | chr1_3:1243443-1243462 | None:intergenic | 25.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr1_3:1243889-1243908 | Msa0095860:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr1_3:1244002-1244021 | Msa0095860:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr1_3:1244202-1244221 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr1_3:1244282-1244301 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr1_3:1244359-1244378 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr1_3:1244546-1244565 | Msa0095860:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr1_3:1244781-1244800 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr1_3:1244855-1244874 | Msa0095860:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr1_3:1244958-1244977 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr1_3:1245128-1245147 | Msa0095860:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr1_3:1245417-1245436 | Msa0095860:CDS | 25.0% |
| AGAAGATTGATAAAGGAAGA+AGG | - | chr1_3:1243322-1243341 | Msa0095860:CDS | 30.0% | |
| ! | AAGTCGGTTTAATATGATGA+AGG | + | chr1_3:1243405-1243424 | None:intergenic | 30.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr1_3:1243788-1243807 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr1_3:1243789-1243808 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr1_3:1244240-1244259 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr1_3:1244367-1244386 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr1_3:1244378-1244397 | Msa0095860:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr1_3:1244405-1244424 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr1_3:1244666-1244685 | Msa0095860:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr1_3:1244673-1244692 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr1_3:1244859-1244878 | Msa0095860:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr1_3:1244941-1244960 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr1_3:1244981-1245000 | Msa0095860:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr1_3:1244982-1245001 | Msa0095860:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr1_3:1245050-1245069 | Msa0095860:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr1_3:1245062-1245081 | Msa0095860:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+CGG | - | chr1_3:1245142-1245161 | Msa0095860:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr1_3:1245415-1245434 | None:intergenic | 30.0% |
| AGAAGATTGATAAAGGAAGA+AGG | - | chr1_3:1243322-1243341 | Msa0095860:CDS | 30.0% | |
| ! | AAGTCGGTTTAATATGATGA+AGG | + | chr1_3:1243405-1243424 | None:intergenic | 30.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr1_3:1243788-1243807 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr1_3:1243789-1243808 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr1_3:1244240-1244259 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr1_3:1244367-1244386 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr1_3:1244378-1244397 | Msa0095860:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr1_3:1244405-1244424 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr1_3:1244666-1244685 | Msa0095860:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr1_3:1244673-1244692 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr1_3:1244859-1244878 | Msa0095860:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr1_3:1244941-1244960 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr1_3:1244981-1245000 | Msa0095860:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr1_3:1244982-1245001 | Msa0095860:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr1_3:1245050-1245069 | Msa0095860:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr1_3:1245062-1245081 | Msa0095860:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+CGG | - | chr1_3:1245142-1245161 | Msa0095860:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr1_3:1245415-1245434 | None:intergenic | 30.0% |
| CGGTTTAATATGATGAAGGA+AGG | + | chr1_3:1243401-1243420 | None:intergenic | 35.0% | |
| TGTAATGTTATGCAGGTGAA+GGG | + | chr1_3:1243436-1243455 | None:intergenic | 35.0% | |
| TTGTAATGTTATGCAGGTGA+AGG | + | chr1_3:1243437-1243456 | None:intergenic | 35.0% | |
| GAAATAAGGACACGTAAGAA+TGG | - | chr1_3:1243597-1243616 | Msa0095860:intron | 35.0% | |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr1_3:1243619-1243638 | Msa0095860:intron | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr1_3:1243634-1243653 | Msa0095860:intron | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr1_3:1243635-1243654 | Msa0095860:intron | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr1_3:1243777-1243796 | Msa0095860:intron | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr1_3:1244252-1244271 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr1_3:1244407-1244426 | Msa0095860:intron | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr1_3:1244823-1244842 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr1_3:1244860-1244879 | Msa0095860:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr1_3:1245048-1245067 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr1_3:1245220-1245239 | Msa0095860:intron | 35.0% | |
| CGGTTTAATATGATGAAGGA+AGG | + | chr1_3:1243401-1243420 | None:intergenic | 35.0% | |
| TGTAATGTTATGCAGGTGAA+GGG | + | chr1_3:1243436-1243455 | None:intergenic | 35.0% | |
| TTGTAATGTTATGCAGGTGA+AGG | + | chr1_3:1243437-1243456 | None:intergenic | 35.0% | |
| GAAATAAGGACACGTAAGAA+TGG | - | chr1_3:1243597-1243616 | Msa0095860:intron | 35.0% | |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr1_3:1243619-1243638 | Msa0095860:intron | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr1_3:1243634-1243653 | Msa0095860:intron | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr1_3:1243635-1243654 | Msa0095860:intron | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr1_3:1243777-1243796 | Msa0095860:intron | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr1_3:1244252-1244271 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr1_3:1244407-1244426 | Msa0095860:intron | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr1_3:1244823-1244842 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr1_3:1244860-1244879 | Msa0095860:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr1_3:1245048-1245067 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr1_3:1245220-1245239 | Msa0095860:intron | 35.0% | |
| GTGAAGGGAAAAAGTGAAGT+CGG | + | chr1_3:1243421-1243440 | None:intergenic | 40.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr1_3:1243636-1243655 | Msa0095860:intron | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr1_3:1244450-1244469 | Msa0095860:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr1_3:1244454-1244473 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr1_3:1244636-1244655 | Msa0095860:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr1_3:1244897-1244916 | Msa0095860:intron | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | + | chr1_3:1245263-1245282 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | - | chr1_3:1245262-1245281 | Msa0095860:intron | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | + | chr1_3:1245266-1245285 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | - | chr1_3:1245265-1245284 | Msa0095860:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr1_3:1245343-1245362 | Msa0095860:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr1_3:1245353-1245372 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr1_3:1245390-1245409 | None:intergenic | 40.0% | |
| GTGAAGGGAAAAAGTGAAGT+CGG | + | chr1_3:1243421-1243440 | None:intergenic | 40.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr1_3:1243636-1243655 | Msa0095860:intron | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr1_3:1244450-1244469 | Msa0095860:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr1_3:1244454-1244473 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr1_3:1244636-1244655 | Msa0095860:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr1_3:1244897-1244916 | Msa0095860:intron | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | + | chr1_3:1245263-1245282 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | - | chr1_3:1245262-1245281 | Msa0095860:intron | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | + | chr1_3:1245266-1245285 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | - | chr1_3:1245265-1245284 | Msa0095860:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr1_3:1245343-1245362 | Msa0095860:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr1_3:1245353-1245372 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr1_3:1245390-1245409 | None:intergenic | 40.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr1_3:1243769-1243788 | Msa0095860:intron | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr1_3:1244440-1244459 | Msa0095860:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr1_3:1244864-1244883 | Msa0095860:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr1_3:1244874-1244893 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr1_3:1244873-1244892 | Msa0095860:intron | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | + | chr1_3:1245257-1245276 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | + | chr1_3:1245258-1245277 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | + | chr1_3:1245259-1245278 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr1_3:1245275-1245294 | Msa0095860:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr1_3:1245276-1245295 | Msa0095860:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr1_3:1245329-1245348 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr1_3:1245391-1245410 | None:intergenic | 45.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr1_3:1243769-1243788 | Msa0095860:intron | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr1_3:1244440-1244459 | Msa0095860:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr1_3:1244864-1244883 | Msa0095860:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr1_3:1244874-1244893 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr1_3:1244873-1244892 | Msa0095860:intron | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | + | chr1_3:1245257-1245276 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | + | chr1_3:1245258-1245277 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | + | chr1_3:1245259-1245278 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr1_3:1245275-1245294 | Msa0095860:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr1_3:1245276-1245295 | Msa0095860:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr1_3:1245329-1245348 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr1_3:1245391-1245410 | None:intergenic | 45.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr1_3:1244879-1244898 | Msa0095860:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr1_3:1245195-1245214 | None:intergenic | 50.0% | |
| TGATGGCAGCAGGAGTAAGT+TGG | + | chr1_3:1245312-1245331 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr1_3:1245337-1245356 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr1_3:1245380-1245399 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr1_3:1245381-1245400 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr1_3:1245382-1245401 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr1_3:1245387-1245406 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr1_3:1245399-1245418 | None:intergenic | 50.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr1_3:1244879-1244898 | Msa0095860:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr1_3:1245195-1245214 | None:intergenic | 50.0% | |
| TGATGGCAGCAGGAGTAAGT+TGG | + | chr1_3:1245312-1245331 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr1_3:1245337-1245356 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr1_3:1245380-1245399 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr1_3:1245381-1245400 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr1_3:1245382-1245401 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr1_3:1245387-1245406 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr1_3:1245399-1245418 | None:intergenic | 50.0% | |
| CCCTATCCACCCTATCATCC+TGG | - | chr1_3:1245378-1245397 | Msa0095860:intron | 55.0% | |
| CCCTATCCACCCTATCATCC+TGG | - | chr1_3:1245378-1245397 | Msa0095860:intron | 55.0% | |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr1_3:1245322-1245341 | None:intergenic | 60.0% |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr1_3:1245322-1245341 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1243297 | 1245459 | 1243297 | ID=Msa0095860;Name=Msa0095860 |
| chr1_3 | mRNA | 1243297 | 1245459 | 1243297 | ID=Msa0095860-mRNA-1;Parent=Msa0095860;Name=Msa0095860-mRNA-1;_AED=0.48;_eAED=0.83;_QI=0|0|0|0.75|0.66|0.75|4|0|119 |
| chr1_3 | exon | 1245413 | 1245459 | 1245413 | ID=Msa0095860-mRNA-1:exon:229;Parent=Msa0095860-mRNA-1 |
| chr1_3 | exon | 1244069 | 1244129 | 1244069 | ID=Msa0095860-mRNA-1:exon:228;Parent=Msa0095860-mRNA-1 |
| chr1_3 | exon | 1243646 | 1243684 | 1243646 | ID=Msa0095860-mRNA-1:exon:227;Parent=Msa0095860-mRNA-1 |
| chr1_3 | exon | 1243297 | 1243509 | 1243297 | ID=Msa0095860-mRNA-1:exon:226;Parent=Msa0095860-mRNA-1 |
| chr1_3 | CDS | 1245413 | 1245459 | 1245413 | ID=Msa0095860-mRNA-1:cds;Parent=Msa0095860-mRNA-1 |
| chr1_3 | CDS | 1244069 | 1244129 | 1244069 | ID=Msa0095860-mRNA-1:cds;Parent=Msa0095860-mRNA-1 |
| chr1_3 | CDS | 1243646 | 1243684 | 1243646 | ID=Msa0095860-mRNA-1:cds;Parent=Msa0095860-mRNA-1 |
| chr1_3 | CDS | 1243297 | 1243509 | 1243297 | ID=Msa0095860-mRNA-1:cds;Parent=Msa0095860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
