Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006380 | Msa0446950 | 0.803050 | 4.193470e-49 | -8.615850e-47 |
| Msa0021510 | Msa0446950 | 0.805457 | 1.322799e-49 | -8.615850e-47 |
| Msa0032090 | Msa0446950 | 0.804680 | 1.922942e-49 | -8.615850e-47 |
| Msa0032430 | Msa0446950 | 0.826460 | 2.679782e-54 | -8.615850e-47 |
| Msa0079380 | Msa0446950 | 0.821431 | 4.052667e-53 | -8.615850e-47 |
| Msa0095860 | Msa0446950 | 0.857131 | 2.011989e-62 | -8.615850e-47 |
| Msa0172070 | Msa0446950 | 0.826890 | 2.115880e-54 | -8.615850e-47 |
| Msa0446950 | Msa0602390 | 0.864576 | 1.101241e-64 | -8.615850e-47 |
| Msa0446950 | Msa0612000 | 0.966383 | 7.568957e-126 | -8.615850e-47 |
| Msa0446950 | Msa0636800 | 0.828529 | 8.545083e-55 | -8.615850e-47 |
| Msa0446950 | Msa0649110 | 0.818107 | 2.328902e-52 | -8.615850e-47 |
| Msa0446950 | Msa0765910 | 0.822794 | 1.957668e-53 | -8.615850e-47 |
| Msa0446950 | Msa0820720 | 0.970259 | 2.400679e-131 | -8.615850e-47 |
| Msa0446950 | Msa0888130 | 0.805388 | 1.367256e-49 | -8.615850e-47 |
| Msa0446950 | Msa0892120 | 0.803114 | 4.067985e-49 | -8.615850e-47 |
| Msa0446950 | Msa1042690 | 0.936008 | 3.443285e-97 | -8.615850e-47 |
| Msa0446950 | Msa1075650 | 0.818214 | 2.203118e-52 | -8.615850e-47 |
| Msa0446950 | Msa1181250 | 0.809954 | 1.465935e-50 | -8.615850e-47 |
| Msa0446950 | Msa1181330 | 0.807070 | 6.047559e-50 | -8.615850e-47 |
| Msa0446950 | Msa1181910 | 0.838007 | 3.713619e-57 | -8.615850e-47 |
| Msa0446950 | Msa1287460 | 0.801611 | 8.297351e-49 | -8.615850e-47 |
| Msa0446950 | Msa1297160 | 0.986881 | 2.715554e-168 | -8.615850e-47 |
| Msa0446950 | Msa1412530 | 0.821719 | 3.477066e-53 | -8.615850e-47 |
| Msa0328810 | Msa0446950 | 0.819113 | 1.376998e-52 | -8.615850e-47 |
| Msa0339480 | Msa0446950 | 0.808247 | 3.401715e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTTTGTGAAGATAAA+AGG | 0.212182 | 3_3:+24108984 | None:intergenic |
| GTGATCTCATCCAGGATGAT+AGG | 0.356626 | 3_3:+24108267 | None:intergenic |
| CCAGGATGATAGGGTGGATA+GGG | 0.403549 | 3_3:+24108277 | None:intergenic |
| ATGTTGAAGGAGGCAAGAAC+TGG | 0.403774 | 3_3:-24108380 | Msa0446950:CDS |
| TAAGGACGGGAAGGAACATT+TGG | 0.428961 | 3_3:-24108782 | Msa0446950:CDS |
| TCTTATAAAATCATCATGAT+AGG | 0.434799 | 3_3:+24108205 | None:intergenic |
| GCAAGAGGTGTGATGGCAGC+AGG | 0.439246 | 3_3:+24108336 | None:intergenic |
| GAAGAAGCACGAGAAAATAA+AGG | 0.445989 | 3_3:-24110036 | Msa0446950:CDS |
| AAATGTTCCTTCCCGTCCTT+AGG | 0.450368 | 3_3:+24108784 | None:intergenic |
| TGATGGCAGCAGGGGTAAGT+TGG | 0.456592 | 3_3:+24108346 | None:intergenic |
| CATACTACCTCTGCTAAGAT+TGG | 0.469905 | 3_3:-24108312 | Msa0446950:CDS |
| CCCTATCCACCCTATCATCC+TGG | 0.477480 | 3_3:-24108277 | Msa0446950:CDS |
| ACCATGTTGCAGAATGTTGA+AGG | 0.481802 | 3_3:-24108393 | Msa0446950:CDS |
| TAAGATAGTAACATATCCTA+AGG | 0.501123 | 3_3:-24108800 | Msa0446950:intron |
| ATTCTGCAACATGGTGGAAG+GGG | 0.513075 | 3_3:+24108401 | None:intergenic |
| TTGCAGGAGTGATCTCATCC+AGG | 0.524797 | 3_3:+24108259 | None:intergenic |
| TGTCTTTGAACAACAAGTGC+AGG | 0.532648 | 3_3:-24109018 | Msa0446950:CDS |
| AAAATCATCATGATAGGAAG+AGG | 0.535692 | 3_3:+24108211 | None:intergenic |
| ACATTCTGCAACATGGTGGA+AGG | 0.539324 | 3_3:+24108399 | None:intergenic |
| TGATCTCATCCAGGATGATA+GGG | 0.550931 | 3_3:+24108268 | None:intergenic |
| TAGTAACATATCCTAAGGAC+GGG | 0.551671 | 3_3:-24108795 | Msa0446950:CDS |
| TCCTTCAACATTCTGCAACA+TGG | 0.556193 | 3_3:+24108392 | None:intergenic |
| CATTCTGCAACATGGTGGAA+GGG | 0.560478 | 3_3:+24108400 | None:intergenic |
| AGTATGAGCAAGAGGTGTGA+TGG | 0.566077 | 3_3:+24108329 | None:intergenic |
| GATGGTCATTGTTGATGCTA+AGG | 0.581330 | 3_3:-24108758 | Msa0446950:intron |
| TCCAGGATGATAGGGTGGAT+AGG | 0.585429 | 3_3:+24108276 | None:intergenic |
| CAAGAGGTGTGATGGCAGCA+GGG | 0.589536 | 3_3:+24108337 | None:intergenic |
| GCAGAGGTAGTATGAGCAAG+AGG | 0.599567 | 3_3:+24108321 | None:intergenic |
| ATAGTAACATATCCTAAGGA+CGG | 0.602531 | 3_3:-24108796 | Msa0446950:CDS |
| CGGGAAGGAACATTTGGAGA+TGG | 0.612772 | 3_3:-24108776 | Msa0446950:CDS |
| TGTTGAAGGAGGCAAGAACT+GGG | 0.613431 | 3_3:-24108379 | Msa0446950:CDS |
| AACATATCCTAAGGACGGGA+AGG | 0.619664 | 3_3:-24108791 | Msa0446950:CDS |
| CAGGATGATAGGGTGGATAG+GGG | 0.620934 | 3_3:+24108278 | None:intergenic |
| AAGAGGTGTGATGGCAGCAG+GGG | 0.623171 | 3_3:+24108338 | None:intergenic |
| TTCAACATTCTGCAACATGG+TGG | 0.658953 | 3_3:+24108395 | None:intergenic |
| TCTCATCCAGGATGATAGGG+TGG | 0.663515 | 3_3:+24108271 | None:intergenic |
| ACTTGAACCAATCTTAGCAG+AGG | 0.665354 | 3_3:+24108305 | None:intergenic |
| ATGTTGCAGAATGTTGAAGG+AGG | 0.685850 | 3_3:-24108390 | Msa0446950:CDS |
| TATGATTTAGGACACAAATG+TGG | 0.703373 | 3_3:-24108593 | Msa0446950:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr3_3:24108567-24108586 | Msa0446950:CDS | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr3_3:24108599-24108618 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr3_3:24108687-24108706 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr3_3:24108778-24108797 | Msa0446950:CDS | 10.0% |
| !!! | ATATTTTATGTATAAAACAA+TGG | - | chr3_3:24108567-24108586 | Msa0446950:CDS | 10.0% |
| !!! | TACATAAAGATTTTTTTTAA+AGG | + | chr3_3:24108599-24108618 | None:intergenic | 10.0% |
| !! | TATATTAGATCTTAAAAAAT+TGG | + | chr3_3:24108687-24108706 | None:intergenic | 10.0% |
| !! | ATAGAAAAAAGATTATAATT+AGG | - | chr3_3:24108778-24108797 | Msa0446950:CDS | 10.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr3_3:24108602-24108621 | Msa0446950:intron | 15.0% |
| !! | AAAAAAATCTTTATGTATTG+AGG | - | chr3_3:24108602-24108621 | Msa0446950:intron | 15.0% |
| !!! | AACAGTAGTTAATTCTTTTT+TGG | - | chr3_3:24108271-24108290 | Msa0446950:CDS | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr3_3:24108279-24108298 | Msa0446950:CDS | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr3_3:24108535-24108554 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr3_3:24108893-24108912 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr3_3:24108892-24108911 | Msa0446950:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr3_3:24109354-24109373 | Msa0446950:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr3_3:24109401-24109420 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | + | chr3_3:24109439-24109458 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr3_3:24109773-24109792 | None:intergenic | 20.0% |
| !!! | AACAGTAGTTAATTCTTTTT+TGG | - | chr3_3:24108271-24108290 | Msa0446950:CDS | 20.0% |
| !!! | TTAATTCTTTTTTGGCTTTT+AGG | - | chr3_3:24108279-24108298 | Msa0446950:CDS | 20.0% |
| !! | ACAATATACAATAGTAATAC+AGG | + | chr3_3:24108535-24108554 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr3_3:24108893-24108912 | None:intergenic | 20.0% |
| !!! | TTTGATAAATGTGATTTTGT+TGG | - | chr3_3:24108892-24108911 | Msa0446950:intron | 20.0% |
| !! | CAAACTTATAACATGTTAAA+TGG | - | chr3_3:24109354-24109373 | Msa0446950:intron | 20.0% |
| !! | ATGTTATTATGCAGTTATTT+AGG | + | chr3_3:24109401-24109420 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATAGCAGTTGA+TGG | + | chr3_3:24109439-24109458 | None:intergenic | 20.0% |
| !! | ACATATGTTTAAACATATCA+AGG | + | chr3_3:24109773-24109792 | None:intergenic | 20.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr3_3:24108491-24108510 | Msa0446950:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr3_3:24108605-24108624 | Msa0446950:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr3_3:24108805-24108824 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr3_3:24108885-24108904 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr3_3:24108962-24108981 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr3_3:24109149-24109168 | Msa0446950:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr3_3:24109384-24109403 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr3_3:24109457-24109476 | Msa0446950:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr3_3:24109560-24109579 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr3_3:24109730-24109749 | Msa0446950:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr3_3:24110019-24110038 | Msa0446950:intron | 25.0% |
| ! | GATATGTTCTGCAAATTTAT+TGG | - | chr3_3:24108491-24108510 | Msa0446950:intron | 25.0% |
| ! | AAAATCTTTATGTATTGAGG+TGG | - | chr3_3:24108605-24108624 | Msa0446950:intron | 25.0% |
| !!! | CGAATATTTTTTTTCATGTG+CGG | + | chr3_3:24108805-24108824 | None:intergenic | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr3_3:24108885-24108904 | None:intergenic | 25.0% |
| !!! | CAACAAATCAAATGGTTTTA+AGG | + | chr3_3:24108962-24108981 | None:intergenic | 25.0% |
| !! | AATTTGTAGTGTTTTCAACT+AGG | - | chr3_3:24109149-24109168 | Msa0446950:intron | 25.0% |
| !! | TTTAGGATATGTACATATGA+AGG | + | chr3_3:24109384-24109403 | None:intergenic | 25.0% |
| ! | TAAGATAGTAACATATCCTA+AGG | - | chr3_3:24109457-24109476 | Msa0446950:intron | 25.0% |
| ! | AAGATGTCATAAATTAGTCA+AGG | + | chr3_3:24109560-24109579 | None:intergenic | 25.0% |
| ! | TCAATTAAGATGATCTACAT+TGG | - | chr3_3:24109730-24109749 | Msa0446950:intron | 25.0% |
| !! | AAAAAACTCTTACTCTAAGA+TGG | - | chr3_3:24110019-24110038 | Msa0446950:intron | 25.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr3_3:24108390-24108409 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr3_3:24108391-24108410 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr3_3:24108843-24108862 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr3_3:24108970-24108989 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr3_3:24108981-24109000 | Msa0446950:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr3_3:24109008-24109027 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr3_3:24109269-24109288 | Msa0446950:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr3_3:24109276-24109295 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr3_3:24109461-24109480 | Msa0446950:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr3_3:24109543-24109562 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr3_3:24109583-24109602 | Msa0446950:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr3_3:24109584-24109603 | Msa0446950:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr3_3:24109652-24109671 | Msa0446950:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr3_3:24109664-24109683 | Msa0446950:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+TGG | - | chr3_3:24109744-24109763 | Msa0446950:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr3_3:24110017-24110036 | None:intergenic | 30.0% |
| ! | TTTTCTGTCCAATAAACCAA+GGG | + | chr3_3:24108390-24108409 | None:intergenic | 30.0% |
| ! | TTTTTCTGTCCAATAAACCA+AGG | + | chr3_3:24108391-24108410 | None:intergenic | 30.0% |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr3_3:24108843-24108862 | None:intergenic | 30.0% | |
| ACATGCATCAACAAATCAAA+TGG | + | chr3_3:24108970-24108989 | None:intergenic | 30.0% | |
| GATGCATGTTTGAAAGAATT+AGG | - | chr3_3:24108981-24109000 | Msa0446950:intron | 30.0% | |
| ! | ATATCATGTAAGCTCTCTTT+TGG | + | chr3_3:24109008-24109027 | None:intergenic | 30.0% |
| ! | TACTCCTTTTATCTTCACAA+AGG | - | chr3_3:24109269-24109288 | Msa0446950:intron | 30.0% |
| CATACCTTTGTGAAGATAAA+AGG | + | chr3_3:24109276-24109295 | None:intergenic | 30.0% | |
| ATAGTAACATATCCTAAGGA+CGG | - | chr3_3:24109461-24109480 | Msa0446950:intron | 30.0% | |
| TCAAGGAAATAATCAGTTGT+AGG | + | chr3_3:24109543-24109562 | None:intergenic | 30.0% | |
| TGTGTGTTTGTTTGCTTATT+AGG | - | chr3_3:24109583-24109602 | Msa0446950:intron | 30.0% | |
| GTGTGTTTGTTTGCTTATTA+GGG | - | chr3_3:24109584-24109603 | Msa0446950:intron | 30.0% | |
| AGATGACAATGCTATGATTT+AGG | - | chr3_3:24109652-24109671 | Msa0446950:intron | 30.0% | |
| ! | TATGATTTAGGACACAAATG+TGG | - | chr3_3:24109664-24109683 | Msa0446950:intron | 30.0% |
| ! | CTACATTGGTTATTTATCTG+TGG | - | chr3_3:24109744-24109763 | Msa0446950:intron | 30.0% |
| !!! | TTAGAGTAAGAGTTTTTTGC+AGG | + | chr3_3:24110017-24110036 | None:intergenic | 30.0% |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr3_3:24108221-24108240 | Msa0446950:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr3_3:24108236-24108255 | Msa0446950:CDS | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr3_3:24108237-24108256 | Msa0446950:CDS | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr3_3:24108379-24108398 | Msa0446950:CDS | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr3_3:24108855-24108874 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr3_3:24109010-24109029 | Msa0446950:CDS | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr3_3:24109426-24109445 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr3_3:24109462-24109481 | Msa0446950:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr3_3:24109650-24109669 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr3_3:24109822-24109841 | Msa0446950:intron | 35.0% | |
| ! | GAAGAAGCACGAGAAAATAA+AGG | - | chr3_3:24108221-24108240 | Msa0446950:CDS | 35.0% |
| AATAAAGGCGAGTACAAAGT+TGG | - | chr3_3:24108236-24108255 | Msa0446950:CDS | 35.0% | |
| ATAAAGGCGAGTACAAAGTT+GGG | - | chr3_3:24108237-24108256 | Msa0446950:CDS | 35.0% | |
| AAAGCTTTCCCTTGGTTTAT+TGG | - | chr3_3:24108379-24108398 | Msa0446950:CDS | 35.0% | |
| TTGTATCTGTTGTTCTTGTG+AGG | + | chr3_3:24108855-24108874 | None:intergenic | 35.0% | |
| AGAGAGCTTACATGATATGT+AGG | - | chr3_3:24109010-24109029 | Msa0446950:CDS | 35.0% | |
| !! | CAGTTGATGGATATGTACTT+AGG | + | chr3_3:24109426-24109445 | None:intergenic | 35.0% |
| TAGTAACATATCCTAAGGAC+GGG | - | chr3_3:24109462-24109481 | Msa0446950:intron | 35.0% | |
| ATCATAGCATTGTCATCTTG+TGG | + | chr3_3:24109650-24109669 | None:intergenic | 35.0% | |
| TAAGAACATGATCTGTCACT+TGG | - | chr3_3:24109822-24109841 | Msa0446950:intron | 35.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr3_3:24108238-24108257 | Msa0446950:CDS | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr3_3:24109053-24109072 | Msa0446950:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr3_3:24109057-24109076 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr3_3:24109239-24109258 | Msa0446950:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr3_3:24109499-24109518 | Msa0446950:intron | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | + | chr3_3:24109865-24109884 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | - | chr3_3:24109864-24109883 | Msa0446950:intron | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | + | chr3_3:24109868-24109887 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | - | chr3_3:24109867-24109886 | Msa0446950:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr3_3:24109945-24109964 | Msa0446950:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr3_3:24109955-24109974 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr3_3:24109992-24110011 | None:intergenic | 40.0% | |
| TAAAGGCGAGTACAAAGTTG+GGG | - | chr3_3:24108238-24108257 | Msa0446950:CDS | 40.0% | |
| TCCATGAATGAGGTCGAAAA+TGG | - | chr3_3:24109053-24109072 | Msa0446950:intron | 40.0% | |
| ! | ACCATTTTCGACCTCATTCA+TGG | + | chr3_3:24109057-24109076 | None:intergenic | 40.0% |
| TGTCTTTGAACAACAAGTGC+AGG | - | chr3_3:24109239-24109258 | Msa0446950:intron | 40.0% | |
| GATGGTCATTGTTGATGCTA+AGG | - | chr3_3:24109499-24109518 | Msa0446950:intron | 40.0% | |
| TTCAACATTCTGCAACATGG+TGG | + | chr3_3:24109865-24109884 | None:intergenic | 40.0% | |
| ACCATGTTGCAGAATGTTGA+AGG | - | chr3_3:24109864-24109883 | Msa0446950:intron | 40.0% | |
| TCCTTCAACATTCTGCAACA+TGG | + | chr3_3:24109868-24109887 | None:intergenic | 40.0% | |
| ATGTTGCAGAATGTTGAAGG+AGG | - | chr3_3:24109867-24109886 | Msa0446950:intron | 40.0% | |
| CATACTACCTCTGCTAAGAT+TGG | - | chr3_3:24109945-24109964 | Msa0446950:intron | 40.0% | |
| ACTTGAACCAATCTTAGCAG+AGG | + | chr3_3:24109955-24109974 | None:intergenic | 40.0% | |
| TGATCTCATCCAGGATGATA+GGG | + | chr3_3:24109992-24110011 | None:intergenic | 40.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr3_3:24108371-24108390 | Msa0446950:CDS | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr3_3:24109043-24109062 | Msa0446950:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr3_3:24109466-24109485 | Msa0446950:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr3_3:24109476-24109495 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr3_3:24109475-24109494 | Msa0446950:intron | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | + | chr3_3:24109859-24109878 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | + | chr3_3:24109860-24109879 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | + | chr3_3:24109861-24109880 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr3_3:24109877-24109896 | Msa0446950:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr3_3:24109878-24109897 | Msa0446950:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr3_3:24109931-24109950 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr3_3:24109993-24110012 | None:intergenic | 45.0% | |
| GTTCTTGCAAAGCTTTCCCT+TGG | - | chr3_3:24108371-24108390 | Msa0446950:CDS | 45.0% | |
| GCTGTAGTACTCCATGAATG+AGG | - | chr3_3:24109043-24109062 | Msa0446950:intron | 45.0% | |
| AACATATCCTAAGGACGGGA+AGG | - | chr3_3:24109466-24109485 | Msa0446950:intron | 45.0% | |
| AAATGTTCCTTCCCGTCCTT+AGG | + | chr3_3:24109476-24109495 | None:intergenic | 45.0% | |
| TAAGGACGGGAAGGAACATT+TGG | - | chr3_3:24109475-24109494 | Msa0446950:intron | 45.0% | |
| ! | ATTCTGCAACATGGTGGAAG+GGG | + | chr3_3:24109859-24109878 | None:intergenic | 45.0% |
| ! | CATTCTGCAACATGGTGGAA+GGG | + | chr3_3:24109860-24109879 | None:intergenic | 45.0% |
| ! | ACATTCTGCAACATGGTGGA+AGG | + | chr3_3:24109861-24109880 | None:intergenic | 45.0% |
| ATGTTGAAGGAGGCAAGAAC+TGG | - | chr3_3:24109877-24109896 | Msa0446950:intron | 45.0% | |
| TGTTGAAGGAGGCAAGAACT+GGG | - | chr3_3:24109878-24109897 | Msa0446950:intron | 45.0% | |
| ! | AGTATGAGCAAGAGGTGTGA+TGG | + | chr3_3:24109931-24109950 | None:intergenic | 45.0% |
| GTGATCTCATCCAGGATGAT+AGG | + | chr3_3:24109993-24110012 | None:intergenic | 45.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr3_3:24109481-24109500 | Msa0446950:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr3_3:24109797-24109816 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr3_3:24109939-24109958 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr3_3:24109982-24110001 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr3_3:24109983-24110002 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr3_3:24109984-24110003 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr3_3:24109989-24110008 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr3_3:24110001-24110020 | None:intergenic | 50.0% | |
| CGGGAAGGAACATTTGGAGA+TGG | - | chr3_3:24109481-24109500 | Msa0446950:intron | 50.0% | |
| AAGTTGCAGATGCAGCACAC+TGG | + | chr3_3:24109797-24109816 | None:intergenic | 50.0% | |
| GCAGAGGTAGTATGAGCAAG+AGG | + | chr3_3:24109939-24109958 | None:intergenic | 50.0% | |
| CAGGATGATAGGGTGGATAG+GGG | + | chr3_3:24109982-24110001 | None:intergenic | 50.0% | |
| CCAGGATGATAGGGTGGATA+GGG | + | chr3_3:24109983-24110002 | None:intergenic | 50.0% | |
| TCCAGGATGATAGGGTGGAT+AGG | + | chr3_3:24109984-24110003 | None:intergenic | 50.0% | |
| TCTCATCCAGGATGATAGGG+TGG | + | chr3_3:24109989-24110008 | None:intergenic | 50.0% | |
| TTGCAGGAGTGATCTCATCC+AGG | + | chr3_3:24110001-24110020 | None:intergenic | 50.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | + | chr3_3:24109914-24109933 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | + | chr3_3:24109922-24109941 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | + | chr3_3:24109923-24109942 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | - | chr3_3:24109980-24109999 | Msa0446950:intron | 55.0% | |
| TGATGGCAGCAGGGGTAAGT+TGG | + | chr3_3:24109914-24109933 | None:intergenic | 55.0% | |
| ! | AAGAGGTGTGATGGCAGCAG+GGG | + | chr3_3:24109922-24109941 | None:intergenic | 55.0% |
| ! | CAAGAGGTGTGATGGCAGCA+GGG | + | chr3_3:24109923-24109942 | None:intergenic | 55.0% |
| CCCTATCCACCCTATCATCC+TGG | - | chr3_3:24109980-24109999 | Msa0446950:intron | 55.0% | |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr3_3:24109924-24109943 | None:intergenic | 60.0% |
| ! | GCAAGAGGTGTGATGGCAGC+AGG | + | chr3_3:24109924-24109943 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 24108218 | 24110061 | 24108218 | ID=Msa0446950;Name=Msa0446950 |
| chr3_3 | mRNA | 24108218 | 24110061 | 24108218 | ID=Msa0446950-mRNA-1;Parent=Msa0446950;Name=Msa0446950-mRNA-1;_AED=0.44;_eAED=0.76;_QI=0|0|0|0.8|1|1|5|0|133 |
| chr3_3 | exon | 24110033 | 24110061 | 24110033 | ID=Msa0446950-mRNA-1:exon:4825;Parent=Msa0446950-mRNA-1 |
| chr3_3 | exon | 24108989 | 24109049 | 24108989 | ID=Msa0446950-mRNA-1:exon:4824;Parent=Msa0446950-mRNA-1 |
| chr3_3 | exon | 24108759 | 24108818 | 24108759 | ID=Msa0446950-mRNA-1:exon:4823;Parent=Msa0446950-mRNA-1 |
| chr3_3 | exon | 24108567 | 24108605 | 24108567 | ID=Msa0446950-mRNA-1:exon:4822;Parent=Msa0446950-mRNA-1 |
| chr3_3 | exon | 24108218 | 24108430 | 24108218 | ID=Msa0446950-mRNA-1:exon:4821;Parent=Msa0446950-mRNA-1 |
| chr3_3 | CDS | 24110033 | 24110061 | 24110033 | ID=Msa0446950-mRNA-1:cds;Parent=Msa0446950-mRNA-1 |
| chr3_3 | CDS | 24108989 | 24109049 | 24108989 | ID=Msa0446950-mRNA-1:cds;Parent=Msa0446950-mRNA-1 |
| chr3_3 | CDS | 24108759 | 24108818 | 24108759 | ID=Msa0446950-mRNA-1:cds;Parent=Msa0446950-mRNA-1 |
| chr3_3 | CDS | 24108567 | 24108605 | 24108567 | ID=Msa0446950-mRNA-1:cds;Parent=Msa0446950-mRNA-1 |
| chr3_3 | CDS | 24108218 | 24108430 | 24108218 | ID=Msa0446950-mRNA-1:cds;Parent=Msa0446950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
