AlfalfaGEDB | Msa0612000

M. sativa cultivar zhongmu-4 / Msa0612000

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032430	Msa0612000	0.807454	5.015928e-50	-8.615850e-47
Msa0079380	Msa0612000	0.806217	9.157838e-50	-8.615850e-47
Msa0095860	Msa0612000	0.820178	7.868359e-53	-8.615850e-47
Msa0172070	Msa0612000	0.807559	4.764193e-50	-8.615850e-47
Msa0328810	Msa0612000	0.807332	5.323249e-50	-8.615850e-47
Msa0446950	Msa0612000	0.966383	7.568957e-126	-8.615850e-47
Msa0467380	Msa0612000	0.806323	8.698507e-50	-8.615850e-47
Msa0475600	Msa0612000	0.800353	1.500011e-48	-8.615850e-47
Msa0602390	Msa0612000	0.857884	1.204272e-62	-8.615850e-47
Msa0612000	Msa0636800	0.825989	3.470016e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 30 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCATGATAGGAAG+AGG	0.535692	4_2:-60378235	None:intergenic
AAGAGGTGTGATGGCAGCAG+GGG	0.623171	4_2:-60378108	None:intergenic
ACATTCTGCAACATGGTGGA+AGG	0.539324	4_2:-60378047	None:intergenic
ACCATGTTGCAGAATGTTGA+AGG	0.481802	4_2:+60378053	Msa0612000:CDS
ACTTGAACCAATCTTAGCAG+AGG	0.665354	4_2:-60378141	None:intergenic
AGTATGAGCAAGAGGTGTGA+TGG	0.566077	4_2:-60378117	None:intergenic
ATGTTGAAGGAGGCAAGAAC+TGG	0.403774	4_2:+60378066	Msa0612000:CDS
ATGTTGCAGAATGTTGAAGG+AGG	0.685850	4_2:+60378056	Msa0612000:CDS
ATTCTGCAACATGGTGGAAG+GGG	0.513075	4_2:-60378045	None:intergenic
CAAGAGGTGTGATGGCAGCA+GGG	0.589536	4_2:-60378109	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATACCTTTGTGAAGATAAA+AGG	-	chr4_2:60377437-60377456	None:intergenic	30.0%
ATAGTAACATATCCTAAGGA+CGG	+	chr4_2:60377624-60377643	Msa0612000:intron	30.0%
TCAAGGAAATAATCAGTTGT+AGG	-	chr4_2:60377706-60377725	None:intergenic	30.0%
TGTGTGTTTGTTTGCTTATT+AGG	+	chr4_2:60377746-60377765	Msa0612000:intron	30.0%
GTGTGTTTGTTTGCTTATTA+GGG	+	chr4_2:60377747-60377766	Msa0612000:intron	30.0%
CATACCTTTGTGAAGATAAA+AGG	-	chr4_2:60377437-60377456	None:intergenic	30.0%
ATAGTAACATATCCTAAGGA+CGG	+	chr4_2:60377624-60377643	Msa0612000:intron	30.0%
TCAAGGAAATAATCAGTTGT+AGG	-	chr4_2:60377706-60377725	None:intergenic	30.0%
TGTGTGTTTGTTTGCTTATT+AGG	+	chr4_2:60377746-60377765	Msa0612000:intron	30.0%
GTGTGTTTGTTTGCTTATTA+GGG	+	chr4_2:60377747-60377766	Msa0612000:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	60377392	60378250	60377392	ID=Msa0612000;Name=Msa0612000
chr4_2	mRNA	60377392	60378250	60377392	ID=Msa0612000-mRNA-1;Parent=Msa0612000;Name=Msa0612000-mRNA-1;_AED=0.42;_eAED=0.81;_QI=0\|0\|0\|1\|0.5\|0.66\|3\|0\|103
chr4_2	exon	60377392	60377451	60377392	ID=Msa0612000-mRNA-1:exon:16199;Parent=Msa0612000-mRNA-1
chr4_2	exon	60377837	60377875	60377837	ID=Msa0612000-mRNA-1:exon:16200;Parent=Msa0612000-mRNA-1
chr4_2	exon	60378038	60378250	60378038	ID=Msa0612000-mRNA-1:exon:16201;Parent=Msa0612000-mRNA-1
chr4_2	CDS	60377392	60377451	60377392	ID=Msa0612000-mRNA-1:cds;Parent=Msa0612000-mRNA-1
chr4_2	CDS	60377837	60377875	60377837	ID=Msa0612000-mRNA-1:cds;Parent=Msa0612000-mRNA-1
chr4_2	CDS	60378038	60378250	60378038	ID=Msa0612000-mRNA-1:cds;Parent=Msa0612000-mRNA-1

Gene Sequence	>Msa0612000 AAAATTGATGTCTTTGAACAACAAGTGCAGGTAAATGATACTCCTTTTATCTTCACAAAGGACACAAATGTGGAGAGTGATGATGTTACTATCTCAGTTATGCAAACCCCTTCCACCATGTTGCAGAATGTTGAAGGAGGCAAGAACTGGGACTCACTCAGCCAACTTACCCCTGCTGCCATCACACCTCTTGCTCATACTACCTCTGCTAAGATTGGTTCAAGTGCTACCCCTATCCACCCTATCATCCTGGATGAGATCACTCCTGCAAAAAACTCTTACTCTAAGATGGTTAACCTCTTCCTATCATGA
Protein sequence	>Msa0612000 KIDVFEQQVQVNDTPFIFTKDTNVESDDVTISVMQTPSTMLQNVEGGKNWDSLSQLTPAAITPLAHTTSAKIGSSATPIHPIILDEITPAKNSYSKMVNLFLS*