Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097400 | XP_003589079.2 | 97.667 | 300 | 3 | 1 | 1 | 296 | 29 | 328 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097400 | sp|O22193|PUB4_ARATH | 48.980 | 294 | 139 | 3 | 19 | 302 | 523 | 815 | 2.61e-78 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097400 | G7ICC9 | 97.667 | 300 | 3 | 1 | 1 | 296 | 29 | 328 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018070 | Msa0097400 | 0.821186 | 4.615627e-53 | -8.615850e-47 |
| Msa0052030 | Msa0097400 | 0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0097400 | Msa1419000 | 0.899655 | 1.597836e-77 | -8.615850e-47 |
| Msa0097400 | Msa1452370 | 0.804399 | 2.200938e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097400 | MtrunA17_Chr1g0152561 | 97.667 | 300 | 3 | 1 | 1 | 296 | 29 | 328 | 0.0 | 577 |
| Msa0097400 | MtrunA17_Chr3g0134761 | 75.163 | 306 | 66 | 3 | 1 | 296 | 17 | 322 | 3.39e-161 | 452 |
| Msa0097400 | MtrunA17_Chr2g0290151 | 51.825 | 274 | 128 | 1 | 33 | 302 | 175 | 448 | 4.37e-80 | 250 |
| Msa0097400 | MtrunA17_Chr1g0183781 | 51.460 | 274 | 128 | 2 | 33 | 302 | 440 | 712 | 3.00e-79 | 254 |
| Msa0097400 | MtrunA17_Chr3g0106931 | 53.285 | 274 | 123 | 2 | 33 | 302 | 553 | 825 | 1.52e-76 | 249 |
| Msa0097400 | MtrunA17_Chr7g0261371 | 50.000 | 274 | 132 | 3 | 33 | 302 | 514 | 786 | 4.47e-74 | 242 |
| Msa0097400 | MtrunA17_Chr4g0044411 | 47.368 | 266 | 136 | 1 | 33 | 294 | 373 | 638 | 4.00e-66 | 218 |
| Msa0097400 | MtrunA17_Chr4g0031431 | 43.554 | 287 | 156 | 2 | 12 | 294 | 334 | 618 | 4.00e-63 | 211 |
| Msa0097400 | MtrunA17_Chr7g0237931 | 42.066 | 271 | 147 | 3 | 28 | 294 | 333 | 597 | 6.85e-58 | 196 |
| Msa0097400 | MtrunA17_Chr7g0248251 | 41.026 | 273 | 156 | 2 | 26 | 294 | 361 | 632 | 2.81e-57 | 194 |
| Msa0097400 | MtrunA17_Chr1g0199321 | 43.985 | 266 | 145 | 1 | 33 | 294 | 345 | 610 | 3.59e-56 | 191 |
| Msa0097400 | MtrunA17_Chr5g0437411 | 40.741 | 270 | 151 | 5 | 36 | 296 | 408 | 677 | 1.16e-45 | 164 |
| Msa0097400 | MtrunA17_Chr7g0275081 | 38.403 | 263 | 148 | 6 | 44 | 294 | 182 | 442 | 1.01e-36 | 136 |
| Msa0097400 | MtrunA17_Chr7g0234671 | 35.094 | 265 | 157 | 7 | 42 | 294 | 180 | 441 | 3.82e-35 | 132 |
| Msa0097400 | MtrunA17_Chr5g0429231 | 35.055 | 271 | 167 | 5 | 33 | 294 | 34 | 304 | 9.85e-32 | 120 |
| Msa0097400 | MtrunA17_Chr2g0284461 | 37.546 | 269 | 156 | 7 | 36 | 294 | 399 | 665 | 2.51e-31 | 123 |
| Msa0097400 | MtrunA17_Chr5g0435041 | 34.296 | 277 | 171 | 7 | 27 | 294 | 14 | 288 | 4.95e-27 | 108 |
| Msa0097400 | MtrunA17_Chr6g0449461 | 32.601 | 273 | 165 | 8 | 34 | 292 | 3 | 270 | 3.51e-24 | 100 |
| Msa0097400 | MtrunA17_Chr3g0118001 | 28.947 | 266 | 180 | 4 | 36 | 294 | 214 | 477 | 2.13e-23 | 100 |
| Msa0097400 | MtrunA17_Chr8g0377151 | 29.430 | 316 | 197 | 9 | 2 | 302 | 404 | 708 | 2.58e-23 | 100 |
| Msa0097400 | MtrunA17_Chr1g0189811 | 34.307 | 274 | 165 | 6 | 35 | 294 | 156 | 428 | 2.92e-23 | 99.0 |
| Msa0097400 | MtrunA17_Chr4g0059201 | 29.924 | 264 | 173 | 8 | 46 | 297 | 434 | 697 | 7.25e-20 | 90.1 |
| Msa0097400 | MtrunA17_Chr3g0137061 | 29.856 | 278 | 177 | 7 | 33 | 294 | 110 | 385 | 1.00e-19 | 89.4 |
| Msa0097400 | MtrunA17_Chr3g0122721 | 31.298 | 262 | 164 | 8 | 54 | 302 | 448 | 706 | 2.63e-19 | 88.2 |
| Msa0097400 | MtrunA17_Chr3g0111451 | 33.457 | 269 | 172 | 6 | 33 | 294 | 41 | 309 | 8.00e-19 | 85.9 |
| Msa0097400 | MtrunA17_Chr4g0048811 | 32.474 | 194 | 124 | 5 | 103 | 293 | 121 | 310 | 1.93e-17 | 81.3 |
| Msa0097400 | MtrunA17_Chr3g0117851 | 31.008 | 258 | 135 | 8 | 46 | 294 | 390 | 613 | 2.18e-17 | 82.4 |
| Msa0097400 | MtrunA17_Chr6g0451581 | 25.843 | 267 | 189 | 3 | 36 | 295 | 241 | 505 | 6.68e-17 | 80.9 |
| Msa0097400 | MtrunA17_Chr1g0149941 | 28.417 | 278 | 178 | 10 | 35 | 294 | 175 | 449 | 1.58e-16 | 79.7 |
| Msa0097400 | MtrunA17_Chr8g0350681 | 27.826 | 230 | 150 | 7 | 73 | 293 | 238 | 460 | 6.07e-16 | 78.2 |
| Msa0097400 | MtrunA17_Chr2g0280671 | 29.242 | 277 | 184 | 6 | 32 | 300 | 104 | 376 | 6.96e-16 | 77.4 |
| Msa0097400 | MtrunA17_Chr1g0199031 | 38.462 | 117 | 52 | 2 | 106 | 222 | 18 | 114 | 3.81e-14 | 68.2 |
| Msa0097400 | MtrunA17_Chr4g0013091 | 31.086 | 267 | 161 | 8 | 44 | 294 | 429 | 688 | 4.91e-14 | 72.4 |
| Msa0097400 | MtrunA17_Chr7g0246731 | 23.529 | 306 | 187 | 7 | 33 | 293 | 156 | 459 | 1.38e-11 | 65.1 |
| Msa0097400 | MtrunA17_Chr1g0159781 | 32.843 | 204 | 110 | 9 | 69 | 257 | 467 | 658 | 3.13e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097400 | AT3G01400.1 | 81.395 | 301 | 51 | 2 | 1 | 296 | 32 | 332 | 2.86e-173 | 484 |
| Msa0097400 | AT5G58680.1 | 74.013 | 304 | 71 | 4 | 1 | 296 | 28 | 331 | 4.55e-156 | 440 |
| Msa0097400 | AT2G23140.3 | 48.980 | 294 | 139 | 3 | 19 | 302 | 334 | 626 | 3.06e-81 | 258 |
| Msa0097400 | AT2G23140.5 | 48.980 | 294 | 139 | 3 | 19 | 302 | 334 | 626 | 3.06e-81 | 258 |
| Msa0097400 | AT2G23140.1 | 48.980 | 294 | 139 | 3 | 19 | 302 | 526 | 818 | 1.97e-79 | 257 |
| Msa0097400 | AT2G23140.2 | 48.980 | 294 | 139 | 3 | 19 | 302 | 523 | 815 | 2.66e-79 | 257 |
| Msa0097400 | AT2G23140.4 | 48.980 | 294 | 139 | 3 | 19 | 302 | 523 | 815 | 2.66e-79 | 257 |
| Msa0097400 | AT4G16490.1 | 51.087 | 276 | 129 | 2 | 33 | 302 | 185 | 460 | 6.38e-76 | 240 |
| Msa0097400 | AT5G67340.1 | 49.818 | 275 | 132 | 3 | 33 | 302 | 423 | 696 | 1.58e-74 | 242 |
| Msa0097400 | AT5G67340.2 | 49.818 | 275 | 132 | 3 | 33 | 302 | 423 | 696 | 1.58e-74 | 242 |
| Msa0097400 | AT3G54790.2 | 49.817 | 273 | 131 | 3 | 35 | 302 | 440 | 711 | 1.60e-72 | 237 |
| Msa0097400 | AT3G54790.3 | 49.817 | 273 | 131 | 3 | 35 | 302 | 476 | 747 | 3.67e-72 | 237 |
| Msa0097400 | AT3G54790.1 | 49.817 | 273 | 131 | 3 | 35 | 302 | 476 | 747 | 3.67e-72 | 237 |
| Msa0097400 | AT1G23030.1 | 45.290 | 276 | 144 | 3 | 26 | 294 | 324 | 599 | 2.03e-64 | 213 |
| Msa0097400 | AT1G71020.2 | 46.269 | 268 | 138 | 2 | 33 | 294 | 195 | 462 | 9.13e-63 | 206 |
| Msa0097400 | AT2G28830.1 | 42.701 | 274 | 151 | 2 | 27 | 294 | 279 | 552 | 7.77e-62 | 206 |
| Msa0097400 | AT1G71020.1 | 46.269 | 268 | 138 | 2 | 33 | 294 | 343 | 610 | 9.66e-62 | 206 |
| Msa0097400 | AT3G46510.1 | 43.985 | 266 | 145 | 1 | 33 | 294 | 354 | 619 | 1.82e-61 | 206 |
| Msa0097400 | AT3G54850.1 | 45.896 | 268 | 139 | 3 | 32 | 294 | 346 | 612 | 9.12e-55 | 188 |
| Msa0097400 | AT5G42340.1 | 41.418 | 268 | 153 | 1 | 31 | 294 | 379 | 646 | 1.18e-49 | 174 |
| Msa0097400 | AT3G07360.5 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.3 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.9 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.6 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.2 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.8 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.10 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.7 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.4 | 34.420 | 276 | 167 | 7 | 31 | 294 | 34 | 307 | 3.46e-34 | 127 |
| Msa0097400 | AT3G07360.1 | 34.420 | 276 | 167 | 7 | 31 | 294 | 169 | 442 | 3.72e-33 | 127 |
| Msa0097400 | AT4G12710.1 | 34.328 | 268 | 162 | 8 | 40 | 294 | 55 | 321 | 2.88e-26 | 107 |
| Msa0097400 | AT1G29340.1 | 38.806 | 268 | 154 | 7 | 36 | 294 | 411 | 677 | 9.33e-26 | 107 |
| Msa0097400 | AT3G03440.1 | 32.246 | 276 | 172 | 7 | 33 | 296 | 66 | 338 | 1.97e-25 | 105 |
| Msa0097400 | AT1G67530.2 | 31.250 | 272 | 173 | 6 | 43 | 302 | 436 | 705 | 1.63e-23 | 101 |
| Msa0097400 | AT1G67530.1 | 31.250 | 272 | 173 | 6 | 43 | 302 | 436 | 705 | 1.63e-23 | 101 |
| Msa0097400 | AT1G67530.4 | 31.250 | 272 | 173 | 6 | 43 | 302 | 436 | 705 | 1.63e-23 | 101 |
| Msa0097400 | AT5G62560.1 | 29.740 | 269 | 178 | 5 | 35 | 294 | 238 | 504 | 3.27e-23 | 100 |
| Msa0097400 | AT5G40140.1 | 29.963 | 267 | 177 | 4 | 36 | 294 | 233 | 497 | 3.00e-22 | 97.1 |
| Msa0097400 | AT5G18320.1 | 35.450 | 189 | 98 | 6 | 29 | 194 | 149 | 336 | 5.02e-21 | 93.2 |
| Msa0097400 | AT1G27910.1 | 29.530 | 298 | 190 | 7 | 23 | 302 | 407 | 702 | 1.76e-20 | 92.0 |
| Msa0097400 | AT5G14510.1 | 32.014 | 278 | 174 | 8 | 36 | 302 | 5 | 278 | 3.89e-20 | 89.4 |
| Msa0097400 | AT1G24330.1 | 30.116 | 259 | 168 | 6 | 55 | 302 | 448 | 704 | 1.86e-19 | 89.4 |
| Msa0097400 | AT1G24330.2 | 30.116 | 259 | 168 | 6 | 55 | 302 | 448 | 704 | 1.86e-19 | 89.4 |
| Msa0097400 | AT4G21350.1 | 33.591 | 259 | 160 | 6 | 27 | 277 | 88 | 342 | 1.10e-17 | 82.8 |
| Msa0097400 | AT4G31890.3 | 30.916 | 262 | 158 | 9 | 51 | 294 | 163 | 419 | 1.19e-17 | 83.6 |
| Msa0097400 | AT4G31890.2 | 30.916 | 262 | 158 | 9 | 51 | 294 | 163 | 419 | 1.19e-17 | 83.6 |
| Msa0097400 | AT4G31890.1 | 30.916 | 262 | 158 | 9 | 51 | 294 | 163 | 419 | 1.19e-17 | 83.6 |
| Msa0097400 | AT1G10560.1 | 31.797 | 217 | 137 | 6 | 36 | 242 | 393 | 608 | 1.99e-16 | 80.1 |
| Msa0097400 | AT2G25130.1 | 28.794 | 257 | 165 | 8 | 54 | 294 | 132 | 386 | 5.46e-15 | 75.5 |
| Msa0097400 | AT5G01830.1 | 28.623 | 276 | 168 | 9 | 44 | 302 | 380 | 643 | 2.05e-14 | 73.9 |
| Msa0097400 | AT5G65200.1 | 26.103 | 272 | 180 | 5 | 40 | 294 | 233 | 500 | 2.08e-14 | 73.9 |
| Msa0097400 | AT1G60190.1 | 27.848 | 237 | 154 | 9 | 46 | 266 | 389 | 624 | 2.52e-13 | 70.9 |
| Msa0097400 | AT3G47820.1 | 35.537 | 121 | 72 | 3 | 48 | 163 | 264 | 383 | 1.69e-12 | 68.2 |
| Msa0097400 | AT5G13060.1 | 24.898 | 245 | 158 | 4 | 33 | 266 | 311 | 540 | 7.67e-12 | 66.2 |
| Msa0097400 | AT5G50900.1 | 28.302 | 265 | 177 | 6 | 34 | 288 | 147 | 408 | 1.97e-11 | 65.1 |
| Msa0097400 | AT1G77460.2 | 28.507 | 221 | 136 | 7 | 84 | 293 | 486 | 695 | 3.26e-11 | 64.7 |
| Msa0097400 | AT1G77460.3 | 28.507 | 221 | 136 | 7 | 84 | 293 | 486 | 695 | 3.26e-11 | 64.7 |
| Msa0097400 | AT1G77460.4 | 28.507 | 221 | 136 | 7 | 84 | 293 | 486 | 695 | 3.26e-11 | 64.7 |
| Msa0097400 | AT1G77460.1 | 28.507 | 221 | 136 | 7 | 84 | 293 | 486 | 695 | 3.26e-11 | 64.7 |
Find 79 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGGTGCAATTCCGTTAT+TGG | 0.216994 | 1_3:+3205220 | Msa0097400:CDS |
| CCGTTATTGGTGAATCTTCT+AGG | 0.217498 | 1_3:+3205233 | Msa0097400:CDS |
| GAAGTAACTAACGAAATTAA+TGG | 0.228085 | 1_3:-3204905 | None:intergenic |
| TGAAGGTGCCATTCCTCCTT+TGG | 0.322339 | 1_3:+3205592 | Msa0097400:CDS |
| TTAGTTAGAGCGTTAAATTC+AGG | 0.337381 | 1_3:+3205031 | Msa0097400:CDS |
| GAGTGTGTTGGTATCGTTGC+CGG | 0.364461 | 1_3:+3205421 | Msa0097400:CDS |
| TTGGTTGAGATTGTGGAGGT+TGG | 0.376021 | 1_3:+3205485 | Msa0097400:CDS |
| CACCGTATTCTTGAAGTTGC+AGG | 0.379035 | 1_3:-3204934 | None:intergenic |
| ATCGAATATGGTGGATAAAT+CGG | 0.413047 | 1_3:+3205388 | Msa0097400:CDS |
| TTTCTGTTCTTCGATTGAAT+CGG | 0.431111 | 1_3:-3204801 | None:intergenic |
| TGCTCTCCTTCGTCTATCTC+AGG | 0.438091 | 1_3:+3205084 | Msa0097400:CDS |
| CGAATCAAAATTGCTAAAGC+TGG | 0.447290 | 1_3:+3204872 | Msa0097400:CDS |
| TGGAGGAATACGCGGGAAGA+AGG | 0.449541 | 1_3:+3205259 | Msa0097400:CDS |
| AAAGAACTAATAGCTTCTTC+CGG | 0.451795 | 1_3:+3204995 | Msa0097400:CDS |
| GAAGGTGTTAGTTGAGTTGA+TGG | 0.452370 | 1_3:+3205355 | Msa0097400:CDS |
| CACAAATCGCGCCAAACAAA+AGG | 0.454708 | 1_3:+3205634 | Msa0097400:CDS |
| AACTAACGGTTTAATAGCTC+CGG | 0.461417 | 1_3:-3205014 | None:intergenic |
| TTGGTTGCTTTGACGCAGTC+CGG | 0.462970 | 1_3:+3205611 | Msa0097400:CDS |
| CGCAGGCGAGGAAGAGTCGT+CGG | 0.463723 | 1_3:-3204727 | None:intergenic |
| GGAGGCGAAGGTTGCGTTGG+TGG | 0.465398 | 1_3:+3205442 | Msa0097400:CDS |
| TTGTTTGGCGCGATTTGTGC+CGG | 0.465975 | 1_3:-3205630 | None:intergenic |
| TTGGTGAATCTTCTAGGAAG+TGG | 0.474246 | 1_3:+3205239 | Msa0097400:CDS |
| CCTAGAAGATTCACCAATAA+CGG | 0.474649 | 1_3:-3205233 | None:intergenic |
| GAAGAGAACAAGGCGGCGAT+TGG | 0.476176 | 1_3:+3205194 | Msa0097400:CDS |
| ACCAACGCAACCTTCGCCTC+CGG | 0.485700 | 1_3:-3205440 | None:intergenic |
| AAGATGAGAGCAGTGAAAGC+GGG | 0.496525 | 1_3:+3205326 | Msa0097400:CDS |
| GGTATCGTTGCCGGAGGCGA+AGG | 0.501938 | 1_3:+3205430 | Msa0097400:CDS |
| GCAGGCGAGGAAGAGTCGTC+GGG | 0.507232 | 1_3:-3204726 | None:intergenic |
| GCCGGTGTTGGTTGAGATTG+TGG | 0.507527 | 1_3:+3205478 | Msa0097400:CDS |
| TAGCGCGGCGGTTCGATCCA+TGG | 0.519060 | 1_3:+3205562 | Msa0097400:CDS |
| GCCGGAGGCGAAGGTTGCGT+TGG | 0.522059 | 1_3:+3205439 | Msa0097400:CDS |
| AAGGCGGCGATTGGAAGATC+CGG | 0.524415 | 1_3:+3205203 | Msa0097400:CDS |
| CGGAGACAAGTTGACGGATG+AGG | 0.526478 | 1_3:-3204769 | None:intergenic |
| CGGGAAGAAGGACGCGTCTA+CGG | 0.528830 | 1_3:+3205271 | Msa0097400:CDS |
| GACTGCAACAGTGACAGATC+CGG | 0.529495 | 1_3:+3204677 | Msa0097400:CDS |
| CAAAGCAACCAAAGGAGGAA+TGG | 0.530629 | 1_3:-3205600 | None:intergenic |
| AGAAGTGGTGGCGAATTCGC+CGG | 0.533976 | 1_3:-3204696 | None:intergenic |
| CGATCCATGGTGGCTCGTGA+AGG | 0.535543 | 1_3:+3205575 | Msa0097400:CDS |
| ATTGCTCGCAAAGAATAAAC+CGG | 0.537284 | 1_3:+3204844 | Msa0097400:CDS |
| GATTGAATCGGAGTGAAGAT+CGG | 0.537748 | 1_3:-3204789 | None:intergenic |
| AAGGTTGCGTTGGTGGAAGA+AGG | 0.538669 | 1_3:+3205449 | Msa0097400:CDS |
| TGCGAGCAATCGAATTTCCA+TGG | 0.550132 | 1_3:-3204831 | None:intergenic |
| GAAGATCGGAGACAAGTTGA+CGG | 0.556676 | 1_3:-3204775 | None:intergenic |
| GACCTGCAACTTCAAGAATA+CGG | 0.556927 | 1_3:+3204932 | Msa0097400:CDS |
| AGAAGGTGGTGTGCCGGTGT+TGG | 0.561302 | 1_3:+3205466 | Msa0097400:CDS |
| AGAACAGAAACAAGCTGCCA+TGG | 0.562865 | 1_3:+3204814 | Msa0097400:CDS |
| GAATTTAACGCTCTAACTAA+CGG | 0.564280 | 1_3:-3205028 | None:intergenic |
| GGTGGAAGAAGGTGGTGTGC+CGG | 0.565802 | 1_3:+3205460 | Msa0097400:CDS |
| TCGTCGGGAGGTAGAAGAAG+TGG | 0.568427 | 1_3:-3204711 | None:intergenic |
| TAAGATGAGAGCAGTGAAAG+CGG | 0.573018 | 1_3:+3205325 | Msa0097400:CDS |
| AGTGAAAGCGGGGATAATGA+AGG | 0.578097 | 1_3:+3205337 | Msa0097400:CDS |
| CACCAATAACGGAATTGCAC+CGG | 0.579118 | 1_3:-3205222 | None:intergenic |
| TCCACAATCTCAACCAACAC+CGG | 0.586132 | 1_3:-3205479 | None:intergenic |
| GTATACTCTGTGTTCTGTGA+AGG | 0.596489 | 1_3:+3205298 | Msa0097400:CDS |
| CTAGGAAGTGGAGGAATACG+CGG | 0.602566 | 1_3:+3205251 | Msa0097400:CDS |
| GGTTGGATCGCAGAGACAGA+AGG | 0.604932 | 1_3:+3205502 | Msa0097400:CDS |
| GGCACCTTCACGAGCCACCA+TGG | 0.605176 | 1_3:-3205579 | None:intergenic |
| TATTCTGTTACAGATTTGTG+AGG | 0.606208 | 1_3:+3205538 | Msa0097400:CDS |
| GTTGCGTTGGTGGAAGAAGG+TGG | 0.609924 | 1_3:+3205452 | Msa0097400:CDS |
| ATTACAGGTGGAAGAGAACA+AGG | 0.611067 | 1_3:+3205184 | Msa0097400:intron |
| TGCGTCAAAGCAACCAAAGG+AGG | 0.612998 | 1_3:-3205605 | None:intergenic |
| GGCGAGGAAGAGTCGTCGGG+AGG | 0.616350 | 1_3:-3204723 | None:intergenic |
| GGTGTTAGTTGAGTTGATGG+CGG | 0.617674 | 1_3:+3205358 | Msa0097400:CDS |
| GTGAATCTTCTAGGAAGTGG+AGG | 0.623068 | 1_3:+3205242 | Msa0097400:CDS |
| GACTGCGTCAAAGCAACCAA+AGG | 0.631800 | 1_3:-3205608 | None:intergenic |
| TAGGAAGTGGAGGAATACGC+GGG | 0.637423 | 1_3:+3205252 | Msa0097400:CDS |
| AGATGAGAGCAGTGAAAGCG+GGG | 0.651698 | 1_3:+3205327 | Msa0097400:CDS |
| AAGTTGACGGATGAGGTCAT+CGG | 0.659006 | 1_3:-3204762 | None:intergenic |
| TCGGGAGGTAGAAGAAGTGG+TGG | 0.663074 | 1_3:-3204708 | None:intergenic |
| GCAGAGACAGAAGGAAATTG+CGG | 0.663880 | 1_3:+3205511 | Msa0097400:CDS |
| TAATAACCTGAGATAGACGA+AGG | 0.681280 | 1_3:-3205090 | None:intergenic |
| ACAGATTTGTGAGGATAGCG+CGG | 0.684005 | 1_3:+3205547 | Msa0097400:CDS |
| CGCGGCGGTTCGATCCATGG+TGG | 0.687911 | 1_3:+3205565 | Msa0097400:CDS |
| CAAAGAGAGATTCAAAATCG+CGG | 0.688714 | 1_3:-3204960 | None:intergenic |
| GGTGTTGGTTGAGATTGTGG+AGG | 0.688844 | 1_3:+3205481 | Msa0097400:CDS |
| GAGACAGAAGGAAATTGCGG+CGG | 0.714686 | 1_3:+3205514 | Msa0097400:CDS |
| TGTGTTGGTATCGTTGCCGG+AGG | 0.723155 | 1_3:+3205424 | Msa0097400:CDS |
| GATTTGTGAGGATAGCGCGG+CGG | 0.801712 | 1_3:+3205550 | Msa0097400:CDS |
| ACAGGTGGAAGAGAACAAGG+CGG | 0.815311 | 1_3:+3205187 | Msa0097400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATTGTAAGTTCTAA+CGG | + | chr1_3:3205156-3205175 | Msa0097400:intron | 20.0% |
| !!! | ATAATATTCTACCTTTTGTT+TGG | - | chr1_3:3205648-3205667 | None:intergenic | 20.0% |
| !!! | TTGATTATTGTAAGTTCTAA+CGG | + | chr1_3:3205156-3205175 | Msa0097400:intron | 20.0% |
| !!! | ATAATATTCTACCTTTTGTT+TGG | - | chr1_3:3205648-3205667 | None:intergenic | 20.0% |
| ! | GAAGTAACTAACGAAATTAA+TGG | - | chr1_3:3204908-3204927 | None:intergenic | 25.0% |
| ! | GATGTAATAGTTAGTTATAC+CGG | + | chr1_3:3205113-3205132 | Msa0097400:intron | 25.0% |
| ! | GACAACAACTAATAATTAAC+CGG | - | chr1_3:3205135-3205154 | None:intergenic | 25.0% |
| ! | GAAGTAACTAACGAAATTAA+TGG | - | chr1_3:3204908-3204927 | None:intergenic | 25.0% |
| ! | GATGTAATAGTTAGTTATAC+CGG | + | chr1_3:3205113-3205132 | Msa0097400:intron | 25.0% |
| ! | GACAACAACTAATAATTAAC+CGG | - | chr1_3:3205135-3205154 | None:intergenic | 25.0% |
| TTTCTGTTCTTCGATTGAAT+CGG | - | chr1_3:3204804-3204823 | None:intergenic | 30.0% | |
| !!! | GCAATTTTGATTCGATTTTC+CGG | - | chr1_3:3204866-3204885 | None:intergenic | 30.0% |
| AATTTCGTTAGTTACTTCAC+AGG | + | chr1_3:3204910-3204929 | Msa0097400:intron | 30.0% | |
| AAAGAACTAATAGCTTCTTC+CGG | + | chr1_3:3204995-3205014 | Msa0097400:CDS | 30.0% | |
| GAATTTAACGCTCTAACTAA+CGG | - | chr1_3:3205031-3205050 | None:intergenic | 30.0% | |
| ! | TTAGTTAGAGCGTTAAATTC+AGG | + | chr1_3:3205031-3205050 | Msa0097400:CDS | 30.0% |
| !! | ATCGAATATGGTGGATAAAT+CGG | + | chr1_3:3205388-3205407 | Msa0097400:CDS | 30.0% |
| TATTCTGTTACAGATTTGTG+AGG | + | chr1_3:3205538-3205557 | Msa0097400:CDS | 30.0% | |
| TTTCTGTTCTTCGATTGAAT+CGG | - | chr1_3:3204804-3204823 | None:intergenic | 30.0% | |
| !!! | GCAATTTTGATTCGATTTTC+CGG | - | chr1_3:3204866-3204885 | None:intergenic | 30.0% |
| AATTTCGTTAGTTACTTCAC+AGG | + | chr1_3:3204910-3204929 | Msa0097400:intron | 30.0% | |
| AAAGAACTAATAGCTTCTTC+CGG | + | chr1_3:3204995-3205014 | Msa0097400:CDS | 30.0% | |
| GAATTTAACGCTCTAACTAA+CGG | - | chr1_3:3205031-3205050 | None:intergenic | 30.0% | |
| ! | TTAGTTAGAGCGTTAAATTC+AGG | + | chr1_3:3205031-3205050 | Msa0097400:CDS | 30.0% |
| !! | ATCGAATATGGTGGATAAAT+CGG | + | chr1_3:3205388-3205407 | Msa0097400:CDS | 30.0% |
| TATTCTGTTACAGATTTGTG+AGG | + | chr1_3:3205538-3205557 | Msa0097400:CDS | 30.0% | |
| ATTGCTCGCAAAGAATAAAC+CGG | + | chr1_3:3204844-3204863 | Msa0097400:CDS | 35.0% | |
| CGAATCAAAATTGCTAAAGC+TGG | + | chr1_3:3204872-3204891 | Msa0097400:CDS | 35.0% | |
| CAAAGAGAGATTCAAAATCG+CGG | - | chr1_3:3204963-3204982 | None:intergenic | 35.0% | |
| AACTAACGGTTTAATAGCTC+CGG | - | chr1_3:3205017-3205036 | None:intergenic | 35.0% | |
| TAATAACCTGAGATAGACGA+AGG | - | chr1_3:3205093-3205112 | None:intergenic | 35.0% | |
| GTTCTAACGGTAATGATTAC+AGG | + | chr1_3:3205169-3205188 | Msa0097400:intron | 35.0% | |
| CCTAGAAGATTCACCAATAA+CGG | - | chr1_3:3205236-3205255 | None:intergenic | 35.0% | |
| ! | GGATTTTGAATCGAATATGG+TGG | + | chr1_3:3205379-3205398 | Msa0097400:CDS | 35.0% |
| ATTGCTCGCAAAGAATAAAC+CGG | + | chr1_3:3204844-3204863 | Msa0097400:CDS | 35.0% | |
| CGAATCAAAATTGCTAAAGC+TGG | + | chr1_3:3204872-3204891 | Msa0097400:CDS | 35.0% | |
| CAAAGAGAGATTCAAAATCG+CGG | - | chr1_3:3204963-3204982 | None:intergenic | 35.0% | |
| AACTAACGGTTTAATAGCTC+CGG | - | chr1_3:3205017-3205036 | None:intergenic | 35.0% | |
| TAATAACCTGAGATAGACGA+AGG | - | chr1_3:3205093-3205112 | None:intergenic | 35.0% | |
| GTTCTAACGGTAATGATTAC+AGG | + | chr1_3:3205169-3205188 | Msa0097400:intron | 35.0% | |
| CCTAGAAGATTCACCAATAA+CGG | - | chr1_3:3205236-3205255 | None:intergenic | 35.0% | |
| ! | GGATTTTGAATCGAATATGG+TGG | + | chr1_3:3205379-3205398 | Msa0097400:CDS | 35.0% |
| ! | GATGAGGTCATCGGAATTTT+CGG | - | chr1_3:3204756-3204775 | None:intergenic | 40.0% |
| GATTGAATCGGAGTGAAGAT+CGG | - | chr1_3:3204792-3204811 | None:intergenic | 40.0% | |
| GACCTGCAACTTCAAGAATA+CGG | + | chr1_3:3204932-3204951 | Msa0097400:CDS | 40.0% | |
| CTAACGGTAATGATTACAGG+TGG | + | chr1_3:3205172-3205191 | Msa0097400:intron | 40.0% | |
| ATTACAGGTGGAAGAGAACA+AGG | + | chr1_3:3205184-3205203 | Msa0097400:intron | 40.0% | |
| CCGTTATTGGTGAATCTTCT+AGG | + | chr1_3:3205233-3205252 | Msa0097400:CDS | 40.0% | |
| ! | TTGGTGAATCTTCTAGGAAG+TGG | + | chr1_3:3205239-3205258 | Msa0097400:CDS | 40.0% |
| GTATACTCTGTGTTCTGTGA+AGG | + | chr1_3:3205298-3205317 | Msa0097400:CDS | 40.0% | |
| TAAGATGAGAGCAGTGAAAG+CGG | + | chr1_3:3205325-3205344 | Msa0097400:CDS | 40.0% | |
| !! | GAAGGTGTTAGTTGAGTTGA+TGG | + | chr1_3:3205355-3205374 | Msa0097400:CDS | 40.0% |
| !! | GGCGGATTTTGAATCGAATA+TGG | + | chr1_3:3205376-3205395 | Msa0097400:CDS | 40.0% |
| !! | GGCTTATGTTTTGAGTGTGT+TGG | + | chr1_3:3205409-3205428 | Msa0097400:CDS | 40.0% |
| ! | GATGAGGTCATCGGAATTTT+CGG | - | chr1_3:3204756-3204775 | None:intergenic | 40.0% |
| GATTGAATCGGAGTGAAGAT+CGG | - | chr1_3:3204792-3204811 | None:intergenic | 40.0% | |
| GACCTGCAACTTCAAGAATA+CGG | + | chr1_3:3204932-3204951 | Msa0097400:CDS | 40.0% | |
| CTAACGGTAATGATTACAGG+TGG | + | chr1_3:3205172-3205191 | Msa0097400:intron | 40.0% | |
| ATTACAGGTGGAAGAGAACA+AGG | + | chr1_3:3205184-3205203 | Msa0097400:intron | 40.0% | |
| CCGTTATTGGTGAATCTTCT+AGG | + | chr1_3:3205233-3205252 | Msa0097400:CDS | 40.0% | |
| ! | TTGGTGAATCTTCTAGGAAG+TGG | + | chr1_3:3205239-3205258 | Msa0097400:CDS | 40.0% |
| GTATACTCTGTGTTCTGTGA+AGG | + | chr1_3:3205298-3205317 | Msa0097400:CDS | 40.0% | |
| TAAGATGAGAGCAGTGAAAG+CGG | + | chr1_3:3205325-3205344 | Msa0097400:CDS | 40.0% | |
| !! | GAAGGTGTTAGTTGAGTTGA+TGG | + | chr1_3:3205355-3205374 | Msa0097400:CDS | 40.0% |
| !! | GGCGGATTTTGAATCGAATA+TGG | + | chr1_3:3205376-3205395 | Msa0097400:CDS | 40.0% |
| !! | GGCTTATGTTTTGAGTGTGT+TGG | + | chr1_3:3205409-3205428 | Msa0097400:CDS | 40.0% |
| ! | AAGTTGACGGATGAGGTCAT+CGG | - | chr1_3:3204765-3204784 | None:intergenic | 45.0% |
| ! | GAAGATCGGAGACAAGTTGA+CGG | - | chr1_3:3204778-3204797 | None:intergenic | 45.0% |
| AGAACAGAAACAAGCTGCCA+TGG | + | chr1_3:3204814-3204833 | Msa0097400:CDS | 45.0% | |
| TGCGAGCAATCGAATTTCCA+TGG | - | chr1_3:3204834-3204853 | None:intergenic | 45.0% | |
| CACCGTATTCTTGAAGTTGC+AGG | - | chr1_3:3204937-3204956 | None:intergenic | 45.0% | |
| ATCCGGTGCAATTCCGTTAT+TGG | + | chr1_3:3205220-3205239 | Msa0097400:CDS | 45.0% | |
| ! | CACCAATAACGGAATTGCAC+CGG | - | chr1_3:3205225-3205244 | None:intergenic | 45.0% |
| ! | GTGAATCTTCTAGGAAGTGG+AGG | + | chr1_3:3205242-3205261 | Msa0097400:CDS | 45.0% |
| AAGATGAGAGCAGTGAAAGC+GGG | + | chr1_3:3205326-3205345 | Msa0097400:CDS | 45.0% | |
| AGTGAAAGCGGGGATAATGA+AGG | + | chr1_3:3205337-3205356 | Msa0097400:CDS | 45.0% | |
| !! | GGTGTTAGTTGAGTTGATGG+CGG | + | chr1_3:3205358-3205377 | Msa0097400:CDS | 45.0% |
| TCCACAATCTCAACCAACAC+CGG | - | chr1_3:3205482-3205501 | None:intergenic | 45.0% | |
| TTGGTTGAGATTGTGGAGGT+TGG | + | chr1_3:3205485-3205504 | Msa0097400:CDS | 45.0% | |
| GCAGAGACAGAAGGAAATTG+CGG | + | chr1_3:3205511-3205530 | Msa0097400:CDS | 45.0% | |
| ACAGATTTGTGAGGATAGCG+CGG | + | chr1_3:3205547-3205566 | Msa0097400:CDS | 45.0% | |
| CAAAGCAACCAAAGGAGGAA+TGG | - | chr1_3:3205603-3205622 | None:intergenic | 45.0% | |
| CACAAATCGCGCCAAACAAA+AGG | + | chr1_3:3205634-3205653 | Msa0097400:CDS | 45.0% | |
| ! | AAGTTGACGGATGAGGTCAT+CGG | - | chr1_3:3204765-3204784 | None:intergenic | 45.0% |
| ! | GAAGATCGGAGACAAGTTGA+CGG | - | chr1_3:3204778-3204797 | None:intergenic | 45.0% |
| AGAACAGAAACAAGCTGCCA+TGG | + | chr1_3:3204814-3204833 | Msa0097400:CDS | 45.0% | |
| TGCGAGCAATCGAATTTCCA+TGG | - | chr1_3:3204834-3204853 | None:intergenic | 45.0% | |
| CACCGTATTCTTGAAGTTGC+AGG | - | chr1_3:3204937-3204956 | None:intergenic | 45.0% | |
| ATCCGGTGCAATTCCGTTAT+TGG | + | chr1_3:3205220-3205239 | Msa0097400:CDS | 45.0% | |
| ! | CACCAATAACGGAATTGCAC+CGG | - | chr1_3:3205225-3205244 | None:intergenic | 45.0% |
| ! | GTGAATCTTCTAGGAAGTGG+AGG | + | chr1_3:3205242-3205261 | Msa0097400:CDS | 45.0% |
| AAGATGAGAGCAGTGAAAGC+GGG | + | chr1_3:3205326-3205345 | Msa0097400:CDS | 45.0% | |
| AGTGAAAGCGGGGATAATGA+AGG | + | chr1_3:3205337-3205356 | Msa0097400:CDS | 45.0% | |
| !! | GGTGTTAGTTGAGTTGATGG+CGG | + | chr1_3:3205358-3205377 | Msa0097400:CDS | 45.0% |
| TCCACAATCTCAACCAACAC+CGG | - | chr1_3:3205482-3205501 | None:intergenic | 45.0% | |
| TTGGTTGAGATTGTGGAGGT+TGG | + | chr1_3:3205485-3205504 | Msa0097400:CDS | 45.0% | |
| GCAGAGACAGAAGGAAATTG+CGG | + | chr1_3:3205511-3205530 | Msa0097400:CDS | 45.0% | |
| ACAGATTTGTGAGGATAGCG+CGG | + | chr1_3:3205547-3205566 | Msa0097400:CDS | 45.0% | |
| CAAAGCAACCAAAGGAGGAA+TGG | - | chr1_3:3205603-3205622 | None:intergenic | 45.0% | |
| CACAAATCGCGCCAAACAAA+AGG | + | chr1_3:3205634-3205653 | Msa0097400:CDS | 45.0% | |
| GACTGCAACAGTGACAGATC+CGG | + | chr1_3:3204677-3204696 | Msa0097400:CDS | 50.0% | |
| !! | ATCGGAATTTTCGGAAGCGC+AGG | - | chr1_3:3204747-3204766 | None:intergenic | 50.0% |
| TGCTCTCCTTCGTCTATCTC+AGG | + | chr1_3:3205084-3205103 | Msa0097400:CDS | 50.0% | |
| ACAGGTGGAAGAGAACAAGG+CGG | + | chr1_3:3205187-3205206 | Msa0097400:intron | 50.0% | |
| CTAGGAAGTGGAGGAATACG+CGG | + | chr1_3:3205251-3205270 | Msa0097400:CDS | 50.0% | |
| TAGGAAGTGGAGGAATACGC+GGG | + | chr1_3:3205252-3205271 | Msa0097400:CDS | 50.0% | |
| AGATGAGAGCAGTGAAAGCG+GGG | + | chr1_3:3205327-3205346 | Msa0097400:CDS | 50.0% | |
| ! | GAGTGTGTTGGTATCGTTGC+CGG | + | chr1_3:3205421-3205440 | Msa0097400:CDS | 50.0% |
| ! | AAGGTTGCGTTGGTGGAAGA+AGG | + | chr1_3:3205449-3205468 | Msa0097400:CDS | 50.0% |
| !! | GGTGTTGGTTGAGATTGTGG+AGG | + | chr1_3:3205481-3205500 | Msa0097400:CDS | 50.0% |
| GAGACAGAAGGAAATTGCGG+CGG | + | chr1_3:3205514-3205533 | Msa0097400:CDS | 50.0% | |
| !! | TGAAGGTGCCATTCCTCCTT+TGG | + | chr1_3:3205592-3205611 | Msa0097400:CDS | 50.0% |
| TGCGTCAAAGCAACCAAAGG+AGG | - | chr1_3:3205608-3205627 | None:intergenic | 50.0% | |
| GACTGCGTCAAAGCAACCAA+AGG | - | chr1_3:3205611-3205630 | None:intergenic | 50.0% | |
| ! | TTGGTTGCTTTGACGCAGTC+CGG | + | chr1_3:3205611-3205630 | Msa0097400:CDS | 50.0% |
| TTGTTTGGCGCGATTTGTGC+CGG | - | chr1_3:3205633-3205652 | None:intergenic | 50.0% | |
| GACTGCAACAGTGACAGATC+CGG | + | chr1_3:3204677-3204696 | Msa0097400:CDS | 50.0% | |
| !! | ATCGGAATTTTCGGAAGCGC+AGG | - | chr1_3:3204747-3204766 | None:intergenic | 50.0% |
| TGCTCTCCTTCGTCTATCTC+AGG | + | chr1_3:3205084-3205103 | Msa0097400:CDS | 50.0% | |
| ACAGGTGGAAGAGAACAAGG+CGG | + | chr1_3:3205187-3205206 | Msa0097400:intron | 50.0% | |
| CTAGGAAGTGGAGGAATACG+CGG | + | chr1_3:3205251-3205270 | Msa0097400:CDS | 50.0% | |
| TAGGAAGTGGAGGAATACGC+GGG | + | chr1_3:3205252-3205271 | Msa0097400:CDS | 50.0% | |
| AGATGAGAGCAGTGAAAGCG+GGG | + | chr1_3:3205327-3205346 | Msa0097400:CDS | 50.0% | |
| ! | GAGTGTGTTGGTATCGTTGC+CGG | + | chr1_3:3205421-3205440 | Msa0097400:CDS | 50.0% |
| ! | AAGGTTGCGTTGGTGGAAGA+AGG | + | chr1_3:3205449-3205468 | Msa0097400:CDS | 50.0% |
| !! | GGTGTTGGTTGAGATTGTGG+AGG | + | chr1_3:3205481-3205500 | Msa0097400:CDS | 50.0% |
| GAGACAGAAGGAAATTGCGG+CGG | + | chr1_3:3205514-3205533 | Msa0097400:CDS | 50.0% | |
| !! | TGAAGGTGCCATTCCTCCTT+TGG | + | chr1_3:3205592-3205611 | Msa0097400:CDS | 50.0% |
| TGCGTCAAAGCAACCAAAGG+AGG | - | chr1_3:3205608-3205627 | None:intergenic | 50.0% | |
| GACTGCGTCAAAGCAACCAA+AGG | - | chr1_3:3205611-3205630 | None:intergenic | 50.0% | |
| ! | TTGGTTGCTTTGACGCAGTC+CGG | + | chr1_3:3205611-3205630 | Msa0097400:CDS | 50.0% |
| TTGTTTGGCGCGATTTGTGC+CGG | - | chr1_3:3205633-3205652 | None:intergenic | 50.0% | |
| ! | AGAAGTGGTGGCGAATTCGC+CGG | - | chr1_3:3204699-3204718 | None:intergenic | 55.0% |
| TCGGGAGGTAGAAGAAGTGG+TGG | - | chr1_3:3204711-3204730 | None:intergenic | 55.0% | |
| TCGTCGGGAGGTAGAAGAAG+TGG | - | chr1_3:3204714-3204733 | None:intergenic | 55.0% | |
| !! | AATTTTCGGAAGCGCAGGCG+AGG | - | chr1_3:3204742-3204761 | None:intergenic | 55.0% |
| ! | CGGAGACAAGTTGACGGATG+AGG | - | chr1_3:3204772-3204791 | None:intergenic | 55.0% |
| GAAGAGAACAAGGCGGCGAT+TGG | + | chr1_3:3205194-3205213 | Msa0097400:CDS | 55.0% | |
| AAGGCGGCGATTGGAAGATC+CGG | + | chr1_3:3205203-3205222 | Msa0097400:CDS | 55.0% | |
| TGGAGGAATACGCGGGAAGA+AGG | + | chr1_3:3205259-3205278 | Msa0097400:CDS | 55.0% | |
| ! | TGTGTTGGTATCGTTGCCGG+AGG | + | chr1_3:3205424-3205443 | Msa0097400:CDS | 55.0% |
| ! | GTTGCGTTGGTGGAAGAAGG+TGG | + | chr1_3:3205452-3205471 | Msa0097400:CDS | 55.0% |
| !! | GCCGGTGTTGGTTGAGATTG+TGG | + | chr1_3:3205478-3205497 | Msa0097400:CDS | 55.0% |
| GGTTGGATCGCAGAGACAGA+AGG | + | chr1_3:3205502-3205521 | Msa0097400:CDS | 55.0% | |
| GATTTGTGAGGATAGCGCGG+CGG | + | chr1_3:3205550-3205569 | Msa0097400:CDS | 55.0% | |
| ! | AGAAGTGGTGGCGAATTCGC+CGG | - | chr1_3:3204699-3204718 | None:intergenic | 55.0% |
| TCGGGAGGTAGAAGAAGTGG+TGG | - | chr1_3:3204711-3204730 | None:intergenic | 55.0% | |
| TCGTCGGGAGGTAGAAGAAG+TGG | - | chr1_3:3204714-3204733 | None:intergenic | 55.0% | |
| !! | AATTTTCGGAAGCGCAGGCG+AGG | - | chr1_3:3204742-3204761 | None:intergenic | 55.0% |
| ! | CGGAGACAAGTTGACGGATG+AGG | - | chr1_3:3204772-3204791 | None:intergenic | 55.0% |
| GAAGAGAACAAGGCGGCGAT+TGG | + | chr1_3:3205194-3205213 | Msa0097400:CDS | 55.0% | |
| AAGGCGGCGATTGGAAGATC+CGG | + | chr1_3:3205203-3205222 | Msa0097400:CDS | 55.0% | |
| TGGAGGAATACGCGGGAAGA+AGG | + | chr1_3:3205259-3205278 | Msa0097400:CDS | 55.0% | |
| ! | TGTGTTGGTATCGTTGCCGG+AGG | + | chr1_3:3205424-3205443 | Msa0097400:CDS | 55.0% |
| ! | GTTGCGTTGGTGGAAGAAGG+TGG | + | chr1_3:3205452-3205471 | Msa0097400:CDS | 55.0% |
| !! | GCCGGTGTTGGTTGAGATTG+TGG | + | chr1_3:3205478-3205497 | Msa0097400:CDS | 55.0% |
| GGTTGGATCGCAGAGACAGA+AGG | + | chr1_3:3205502-3205521 | Msa0097400:CDS | 55.0% | |
| GATTTGTGAGGATAGCGCGG+CGG | + | chr1_3:3205550-3205569 | Msa0097400:CDS | 55.0% | |
| CGGGAAGAAGGACGCGTCTA+CGG | + | chr1_3:3205271-3205290 | Msa0097400:CDS | 60.0% | |
| ACCAACGCAACCTTCGCCTC+CGG | - | chr1_3:3205443-3205462 | None:intergenic | 60.0% | |
| GGTGGAAGAAGGTGGTGTGC+CGG | + | chr1_3:3205460-3205479 | Msa0097400:CDS | 60.0% | |
| ! | AGAAGGTGGTGTGCCGGTGT+TGG | + | chr1_3:3205466-3205485 | Msa0097400:CDS | 60.0% |
| CGATCCATGGTGGCTCGTGA+AGG | + | chr1_3:3205575-3205594 | Msa0097400:CDS | 60.0% | |
| CGGGAAGAAGGACGCGTCTA+CGG | + | chr1_3:3205271-3205290 | Msa0097400:CDS | 60.0% | |
| ACCAACGCAACCTTCGCCTC+CGG | - | chr1_3:3205443-3205462 | None:intergenic | 60.0% | |
| GGTGGAAGAAGGTGGTGTGC+CGG | + | chr1_3:3205460-3205479 | Msa0097400:CDS | 60.0% | |
| ! | AGAAGGTGGTGTGCCGGTGT+TGG | + | chr1_3:3205466-3205485 | Msa0097400:CDS | 60.0% |
| CGATCCATGGTGGCTCGTGA+AGG | + | chr1_3:3205575-3205594 | Msa0097400:CDS | 60.0% | |
| GCAGGCGAGGAAGAGTCGTC+GGG | - | chr1_3:3204729-3204748 | None:intergenic | 65.0% | |
| CGCAGGCGAGGAAGAGTCGT+CGG | - | chr1_3:3204730-3204749 | None:intergenic | 65.0% | |
| GGTATCGTTGCCGGAGGCGA+AGG | + | chr1_3:3205430-3205449 | Msa0097400:CDS | 65.0% | |
| GGAGGCGAAGGTTGCGTTGG+TGG | + | chr1_3:3205442-3205461 | Msa0097400:CDS | 65.0% | |
| TAGCGCGGCGGTTCGATCCA+TGG | + | chr1_3:3205562-3205581 | Msa0097400:CDS | 65.0% | |
| GGCACCTTCACGAGCCACCA+TGG | - | chr1_3:3205582-3205601 | None:intergenic | 65.0% | |
| GCAGGCGAGGAAGAGTCGTC+GGG | - | chr1_3:3204729-3204748 | None:intergenic | 65.0% | |
| CGCAGGCGAGGAAGAGTCGT+CGG | - | chr1_3:3204730-3204749 | None:intergenic | 65.0% | |
| GGTATCGTTGCCGGAGGCGA+AGG | + | chr1_3:3205430-3205449 | Msa0097400:CDS | 65.0% | |
| GGAGGCGAAGGTTGCGTTGG+TGG | + | chr1_3:3205442-3205461 | Msa0097400:CDS | 65.0% | |
| TAGCGCGGCGGTTCGATCCA+TGG | + | chr1_3:3205562-3205581 | Msa0097400:CDS | 65.0% | |
| GGCACCTTCACGAGCCACCA+TGG | - | chr1_3:3205582-3205601 | None:intergenic | 65.0% | |
| GGCGAGGAAGAGTCGTCGGG+AGG | - | chr1_3:3204726-3204745 | None:intergenic | 70.0% | |
| GCCGGAGGCGAAGGTTGCGT+TGG | + | chr1_3:3205439-3205458 | Msa0097400:CDS | 70.0% | |
| CGCGGCGGTTCGATCCATGG+TGG | + | chr1_3:3205565-3205584 | Msa0097400:CDS | 70.0% | |
| GGCGAGGAAGAGTCGTCGGG+AGG | - | chr1_3:3204726-3204745 | None:intergenic | 70.0% | |
| GCCGGAGGCGAAGGTTGCGT+TGG | + | chr1_3:3205439-3205458 | Msa0097400:CDS | 70.0% | |
| CGCGGCGGTTCGATCCATGG+TGG | + | chr1_3:3205565-3205584 | Msa0097400:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3204677 | 3205688 | 3204677 | ID=Msa0097400;Name=Msa0097400 |
| chr1_3 | mRNA | 3204677 | 3205688 | 3204677 | ID=Msa0097400-mRNA-1;Parent=Msa0097400;Name=Msa0097400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0.5|0.33|3|0|305 |
| chr1_3 | exon | 3204677 | 3204919 | 3204677 | ID=Msa0097400-mRNA-1:exon:914;Parent=Msa0097400-mRNA-1 |
| chr1_3 | exon | 3204932 | 3205105 | 3204932 | ID=Msa0097400-mRNA-1:exon:915;Parent=Msa0097400-mRNA-1 |
| chr1_3 | exon | 3205191 | 3205688 | 3205191 | ID=Msa0097400-mRNA-1:exon:916;Parent=Msa0097400-mRNA-1 |
| chr1_3 | CDS | 3204677 | 3204919 | 3204677 | ID=Msa0097400-mRNA-1:cds;Parent=Msa0097400-mRNA-1 |
| chr1_3 | CDS | 3204932 | 3205105 | 3204932 | ID=Msa0097400-mRNA-1:cds;Parent=Msa0097400-mRNA-1 |
| chr1_3 | CDS | 3205191 | 3205688 | 3205191 | ID=Msa0097400-mRNA-1:cds;Parent=Msa0097400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
