AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018070 MtrunA17_Chr1g0152561 94.398 357 3 1 1 357 1 340 0.0 667
Msa0018070 MtrunA17_Chr3g0134761 71.714 350 75 5 16 359 5 336 1.36e-172 483
Msa0018070 MtrunA17_Chr1g0183781 53.008 266 124 1 61 326 440 704 1.59e-80 260
Msa0018070 MtrunA17_Chr2g0290151 49.164 299 135 1 61 359 175 456 3.11e-80 252
Msa0018070 MtrunA17_Chr3g0106931 54.887 266 119 1 61 326 553 817 1.61e-78 257
Msa0018070 MtrunA17_Chr7g0261371 51.128 266 129 1 61 326 514 778 1.93e-74 245
Msa0018070 MtrunA17_Chr4g0044411 48.120 266 138 0 61 326 373 638 1.78e-69 229
Msa0018070 MtrunA17_Chr4g0031431 41.368 307 178 1 27 333 321 625 1.85e-64 216
Msa0018070 MtrunA17_Chr7g0248251 40.647 278 164 1 54 331 361 637 1.11e-59 203
Msa0018070 MtrunA17_Chr7g0237931 42.066 271 151 2 56 326 333 597 1.34e-58 199
Msa0018070 MtrunA17_Chr1g0199321 44.361 266 148 0 61 326 345 610 2.80e-58 199
Msa0018070 MtrunA17_Chr5g0437411 41.544 272 146 5 64 326 408 675 3.14e-48 172
Msa0018070 MtrunA17_Chr7g0275081 38.043 276 159 6 68 333 176 449 3.33e-37 139
Msa0018070 MtrunA17_Chr5g0429231 34.007 297 174 5 61 352 34 313 2.96e-34 129
Msa0018070 MtrunA17_Chr7g0234671 34.559 272 167 7 70 333 180 448 3.19e-34 131
Msa0018070 MtrunA17_Chr2g0284461 37.546 269 160 6 64 326 399 665 3.22e-33 130
Msa0018070 MtrunA17_Chr5g0435041 33.574 277 177 5 55 326 14 288 2.46e-27 110
Msa0018070 MtrunA17_Chr3g0118001 28.571 266 185 2 64 326 214 477 6.34e-26 108
Msa0018070 MtrunA17_Chr8g0377151 29.326 341 202 10 30 359 404 716 4.78e-24 103
Msa0018070 MtrunA17_Chr3g0137061 30.216 278 180 6 61 326 110 385 1.64e-22 98.6
Msa0018070 MtrunA17_Chr1g0189811 34.307 274 169 6 63 326 156 428 2.72e-22 97.4
Msa0018070 MtrunA17_Chr4g0059201 28.443 334 220 10 7 331 376 699 2.78e-22 98.6
Msa0018070 MtrunA17_Chr3g0122721 31.095 283 166 9 82 355 448 710 1.36e-19 90.5
Msa0018070 MtrunA17_Chr3g0111451 32.237 304 179 7 61 356 41 325 2.70e-19 88.2
Msa0018070 MtrunA17_Chr1g0149941 28.618 304 183 10 63 352 175 458 3.73e-19 89.0
Msa0018070 MtrunA17_Chr8g0350681 29.130 230 151 6 101 325 238 460 2.07e-18 86.7
Msa0018070 MtrunA17_Chr6g0451581 25.188 266 194 2 64 326 241 504 5.00e-18 85.5
Msa0018070 MtrunA17_Chr3g0117851 30.515 272 144 9 74 336 390 625 5.23e-18 85.5
Msa0018070 MtrunA17_Chr4g0048811 31.925 213 134 7 135 343 121 326 2.03e-17 82.0
Msa0018070 MtrunA17_Chr6g0449461 29.478 268 141 6 64 324 44 270 1.98e-16 79.3
Msa0018070 MtrunA17_Chr4g0013091 31.271 291 170 10 72 342 429 709 1.80e-15 77.8
Msa0018070 MtrunA17_Chr2g0280671 28.315 279 188 6 60 332 104 376 3.93e-15 75.9
Msa0018070 MtrunA17_Chr1g0205751 25.735 272 194 3 61 332 282 545 1.38e-14 75.1
Msa0018070 MtrunA17_Chr7g0259851 28.079 203 138 2 61 263 269 463 2.26e-14 74.3
Msa0018070 MtrunA17_Chr1g0199031 37.607 117 56 1 138 254 18 117 9.52e-14 67.8
Msa0018070 MtrunA17_Chr7g0246731 23.529 306 191 6 61 325 156 459 2.68e-13 70.9
Msa0018070 MtrunA17_Chr5g0394261 26.255 259 183 3 74 332 292 542 3.23e-13 70.9
Msa0018070 MtrunA17_Chr7g0215741 33.793 145 93 1 99 240 597 741 1.12e-11 66.2
Msa0018070 MtrunA17_Chr5g0413681 25.461 271 194 4 64 326 386 656 3.37e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018070 AT3G01400.1 76.685 356 63 3 5 359 10 346 0.0 537
Msa0018070 AT5G58680.1 69.774 354 86 4 5 355 6 341 2.46e-173 486
Msa0018070 AT2G23140.3 50.000 286 136 2 47 326 334 618 7.18e-82 262
Msa0018070 AT2G23140.5 50.000 286 136 2 47 326 334 618 7.18e-82 262
Msa0018070 AT2G23140.2 48.397 312 150 4 25 326 497 807 4.30e-80 261
Msa0018070 AT2G23140.4 48.397 312 150 4 25 326 497 807 4.30e-80 261
Msa0018070 AT2G23140.1 48.397 312 150 4 25 326 500 810 4.70e-80 261
Msa0018070 AT4G16490.1 48.837 301 135 2 61 359 185 468 1.93e-78 248
Msa0018070 AT5G67340.1 51.311 267 128 2 61 326 423 688 1.10e-75 247
Msa0018070 AT5G67340.2 51.311 267 128 2 61 326 423 688 1.10e-75 247
Msa0018070 AT3G54790.2 51.698 265 126 2 63 326 440 703 1.69e-74 244
Msa0018070 AT3G54790.3 51.698 265 126 2 63 326 476 739 4.16e-74 244
Msa0018070 AT3G54790.1 51.698 265 126 2 63 326 476 739 4.16e-74 244
Msa0018070 AT1G23030.1 46.014 276 146 2 54 326 324 599 1.58e-67 224
Msa0018070 AT1G71020.2 46.520 273 144 2 61 331 195 467 3.80e-65 214
Msa0018070 AT1G71020.1 46.520 273 144 2 61 331 343 615 4.57e-64 215
Msa0018070 AT3G46510.1 43.985 266 149 0 61 326 354 619 1.15e-63 214
Msa0018070 AT2G28830.1 44.403 268 147 2 61 326 285 552 5.27e-63 211
Msa0018070 AT3G54850.1 46.269 268 142 2 60 326 346 612 6.84e-57 196
Msa0018070 AT5G42340.1 41.026 273 161 0 59 331 379 651 9.27e-52 182
Msa0018070 AT3G07360.5 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.3 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.9 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.6 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.2 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.8 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.10 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.7 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.4 34.155 284 175 7 59 333 34 314 8.47e-35 130
Msa0018070 AT3G07360.1 34.155 284 175 7 59 333 169 449 7.85e-34 130
Msa0018070 AT4G12710.1 34.155 284 177 7 68 342 55 337 8.34e-29 115
Msa0018070 AT1G29340.1 39.179 268 157 6 64 326 411 677 2.67e-28 116
Msa0018070 AT5G62560.1 30.112 269 181 4 63 326 238 504 2.75e-25 107
Msa0018070 AT5G40140.1 30.597 268 178 4 64 326 233 497 5.44e-24 103
Msa0018070 AT1G67530.2 32.576 264 168 6 71 326 436 697 1.10e-23 103
Msa0018070 AT1G67530.1 32.576 264 168 6 71 326 436 697 1.10e-23 103
Msa0018070 AT1G67530.4 32.576 264 168 6 71 326 436 697 1.10e-23 103
Msa0018070 AT5G14510.1 33.457 269 168 7 64 325 5 269 1.08e-22 97.4
Msa0018070 AT3G03440.1 30.061 326 162 7 38 360 91 353 4.77e-22 97.1
Msa0018070 AT1G27910.1 30.094 319 190 8 51 355 407 706 6.16e-22 97.8
Msa0018070 AT5G18320.1 29.073 313 194 10 57 344 149 458 8.43e-21 93.6
Msa0018070 AT1G24330.1 30.000 280 180 7 83 348 448 725 9.53e-20 91.3
Msa0018070 AT1G24330.2 30.000 280 180 7 83 348 448 725 9.53e-20 91.3
Msa0018070 AT4G31890.3 31.538 260 163 8 79 326 163 419 1.24e-19 90.5
Msa0018070 AT4G31890.2 31.538 260 163 8 79 326 163 419 1.24e-19 90.5
Msa0018070 AT4G31890.1 31.538 260 163 8 79 326 163 419 1.24e-19 90.5
Msa0018070 AT5G65200.1 27.609 297 193 6 64 353 229 510 1.37e-19 90.5
Msa0018070 AT4G21350.1 33.977 259 163 5 55 309 88 342 3.67e-19 88.2
Msa0018070 AT1G10560.1 32.258 217 140 5 64 274 393 608 2.11e-18 87.0
Msa0018070 AT3G47820.1 28.814 295 189 8 71 349 218 507 1.06e-17 84.7
Msa0018070 AT2G25130.1 29.183 257 168 7 82 326 132 386 1.31e-16 81.3
Msa0018070 AT5G01830.1 30.303 264 167 8 72 326 380 635 3.53e-16 80.5
Msa0018070 AT1G60190.1 28.270 237 157 8 74 298 389 624 1.64e-15 78.2
Msa0018070 AT5G13060.1 25.941 239 155 3 61 292 311 534 6.32e-14 73.6
Msa0018070 AT5G50900.1 28.679 265 180 5 62 320 147 408 2.59e-13 71.6
Msa0018070 AT3G19380.1 27.863 262 171 7 72 318 121 379 2.69e-12 68.2
Msa0018070 AT1G01830.1 27.755 245 171 5 48 287 155 398 4.06e-12 67.8
Msa0018070 AT1G01830.3 27.755 245 171 5 48 287 155 398 4.06e-12 67.8
Msa0018070 AT1G01830.2 27.755 245 171 5 48 287 155 398 4.06e-12 67.8
Msa0018070 AT2G44900.1 33.103 145 94 1 99 240 608 752 1.11e-11 66.6
Msa0018070 AT2G44900.2 33.103 145 94 1 99 240 608 752 1.11e-11 66.6
Msa0018070 AT1G77460.2 28.870 239 150 7 97 325 467 695 1.75e-11 66.2
Msa0018070 AT1G77460.3 28.870 239 150 7 97 325 467 695 1.75e-11 66.2
Msa0018070 AT1G77460.4 28.870 239 150 7 97 325 467 695 1.75e-11 66.2
Msa0018070 AT1G77460.1 28.870 239 150 7 97 325 467 695 1.75e-11 66.2
Msa0018070 AT3G60350.1 34.932 146 90 2 99 240 599 743 6.20e-11 64.3
Msa0018070 AT3G60350.2 34.932 146 90 2 99 240 599 743 6.20e-11 64.3
Msa0018070 AT5G18330.1 27.778 270 169 8 57 306 142 405 9.29e-11 63.5
Msa0018070 AT1G61350.1 23.183 289 169 9 58 337 143 387 9.53e-11 63.5

Find 129 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTATTGGTGAATCTTCT+AGG 0.217498 1_1:+30165736 Msa0018070:CDS
GAAGTAACTAACGAAATTAA+TGG 0.228085 1_1:-30165408 None:intergenic
ATCAGGTGCAATTCCGTTAT+TGG 0.234218 1_1:+30165723 Msa0018070:CDS
GCCTAACGCAAACACCGATA+TGG 0.286572 1_1:+30165077 Msa0018070:exon
GTACGAAAGGAGAATTTATA+TGG 0.293964 1_1:-30164980 None:intergenic
GGATGCTATGGTTGTGGTTC+GGG 0.316819 1_1:-30165040 None:intergenic
TGAAGGTGCCATTCCTCCTT+TGG 0.322339 1_1:+30166095 Msa0018070:CDS
TTTGCGTTAGGCTTGGAATT+AGG 0.325073 1_1:-30165066 None:intergenic
TGTGGTTCGGGTTGGAGGTT+CGG 0.331102 1_1:-30165028 None:intergenic
TTAGTTAGAGCGTTAAATTC+AGG 0.337381 1_1:+30165534 Msa0018070:CDS
CGGATGCTATGGTTGTGGTT+CGG 0.345665 1_1:-30165041 None:intergenic
GTTTGTAAATATCTTCTTAA+CGG 0.347824 1_1:+30168517 Msa0018070:three_prime_UTR
CATTCTGATGTTGTAGATCT+TGG 0.352419 1_1:-30168362 None:intergenic
AGAAAAGAATAAAATGTTAC+TGG 0.354379 1_1:+30168636 Msa0018070:three_prime_UTR
TACATGTGTAACCAAGTCTT+GGG 0.375610 1_1:-30164936 None:intergenic
TTGGTTGAGATTGTGGAGGT+TGG 0.376021 1_1:+30165988 Msa0018070:CDS
CACCGTATTCTTGAAGTTGC+AGG 0.379035 1_1:-30165437 None:intergenic
GAAAGTGTTGGTTGAGTTGA+TGG 0.395341 1_1:+30165858 Msa0018070:CDS
ATCGAATATGGTGGATAAAT+CGG 0.413047 1_1:+30165891 Msa0018070:CDS
ATCGGTGTTTGCGTTAGGCT+TGG 0.429321 1_1:-30165073 None:intergenic
GGAAGTTGAATCGTCGTTGA+TGG 0.431808 1_1:-30165145 None:intergenic
TGCTCTCCTTCGTCTATCTC+AGG 0.438091 1_1:+30165587 Msa0018070:CDS
GAGAAGCTTTGTAAAGTTTG+TGG 0.438474 1_1:+30168539 Msa0018070:three_prime_UTR
CGAATCAAAATTGCTAAAGC+TGG 0.447290 1_1:+30165375 Msa0018070:CDS
TGGAGGAATACGCGGGAAGA+AGG 0.449541 1_1:+30165762 Msa0018070:CDS
AAAGAACTAATAGCTTCTTC+CGG 0.451795 1_1:+30165498 Msa0018070:CDS
CACAAATCGCGCCAAACAAA+AGG 0.454708 1_1:+30166137 Msa0018070:CDS
AATCTCACACGTGCTTGTTA+AGG 0.458845 1_1:+30168426 Msa0018070:three_prime_UTR
AACTAACGGTTTAATAGCTC+CGG 0.461417 1_1:-30165517 None:intergenic
GCTATGGTTGTGGTTCGGGT+TGG 0.462253 1_1:-30165036 None:intergenic
ATGGTTGTGGTTCGGGTTGG+AGG 0.462367 1_1:-30165033 None:intergenic
TTGGTTGCTTTGACGCAGTC+CGG 0.462970 1_1:+30166114 Msa0018070:CDS
CCTAACGCAAACACCGATAT+GGG 0.463513 1_1:+30165078 Msa0018070:exon
CGCAGGCGAGGAAGAGTCGT+CGG 0.463723 1_1:-30165230 None:intergenic
GGAGGCGAAGGTTGCGTTGG+TGG 0.465398 1_1:+30165945 Msa0018070:CDS
TTGTTTGGCGCGATTTGTGC+CGG 0.465975 1_1:-30166133 None:intergenic
TGGTCAAGAACACAATGAAT+TGG 0.466189 1_1:+30168460 Msa0018070:three_prime_UTR
GTTAGGCTTGGAATTAGGTT+CGG 0.466622 1_1:-30165061 None:intergenic
GGAGAATTTATATGGGAGAG+AGG 0.472276 1_1:-30164972 None:intergenic
GAGTGTGTTGGTATCGGTGC+CGG 0.474240 1_1:+30165924 Msa0018070:CDS
TTGGTGAATCTTCTAGGAAG+TGG 0.474246 1_1:+30165742 Msa0018070:CDS
CCTAGAAGATTCACCAATAA+CGG 0.474649 1_1:-30165736 None:intergenic
GAGAATTTATATGGGAGAGA+GGG 0.475558 1_1:-30164971 None:intergenic
AAGATGAGAGCGGTGAAAGC+GGG 0.475585 1_1:+30165829 Msa0018070:CDS
GAAGAGAACAAGGCGGCGAT+TGG 0.476176 1_1:+30165697 Msa0018070:CDS
GGAATTAGGTTCGGATGCTA+TGG 0.477196 1_1:-30165052 None:intergenic
AAAGTGGTGGTGAGGAAGAG+AGG 0.478358 1_1:+30166963 Msa0018070:CDS
AAGGCGGCGATTGGAAGATC+AGG 0.482551 1_1:+30165706 Msa0018070:CDS
ACCAACGCAACCTTCGCCTC+CGG 0.483680 1_1:-30165943 None:intergenic
TTACATGTGTAACCAAGTCT+TGG 0.485092 1_1:-30164937 None:intergenic
GGGTTGGAGGTTCGGAGCCA+CGG 0.489715 1_1:-30165020 None:intergenic
GCACCATAAAATAATTGCTA+GGG 0.490566 1_1:-30168395 None:intergenic
GGTATCGGTGCCGGAGGCGA+AGG 0.495124 1_1:+30165933 Msa0018070:CDS
CCCATATCGGTGTTTGCGTT+AGG 0.498952 1_1:-30165078 None:intergenic
GTAACTCTCTGTTCCCATAT+CGG 0.503292 1_1:-30165091 None:intergenic
AGGTTCGGATGCTATGGTTG+TGG 0.504070 1_1:-30165046 None:intergenic
AATTTCGTTAGTTACTTCAC+AGG 0.505937 1_1:+30165413 Msa0018070:CDS
GCAGGCGAGGAAGAGTCGTC+GGG 0.507232 1_1:-30165229 None:intergenic
GCCGGTGTTGGTTGAGATTG+TGG 0.507527 1_1:+30165981 Msa0018070:CDS
TTTCTGTTCTTCGATTGAGT+CGG 0.509184 1_1:-30165304 None:intergenic
TAGCGCGGCGGTTCGATCCA+TGG 0.519060 1_1:+30166065 Msa0018070:CDS
CGGAGACAAGTTGACGGATG+AGG 0.526478 1_1:-30165272 None:intergenic
CGGGAAGAAGGACGCGTCTA+CGG 0.528830 1_1:+30165774 Msa0018070:CDS
GACTGCAACAGTGACAGATC+CGG 0.529495 1_1:+30165180 Msa0018070:CDS
CAAAGCAACCAAAGGAGGAA+TGG 0.530629 1_1:-30166103 None:intergenic
AGCACCATAAAATAATTGCT+AGG 0.531539 1_1:-30168396 None:intergenic
AACAGAGAGTTACACATACA+TGG 0.531557 1_1:+30165101 Msa0018070:CDS
AGAAGTGGTGGCGAATTCGC+CGG 0.533976 1_1:-30165199 None:intergenic
CGATCCATGGTGGCTCGTGA+AGG 0.535543 1_1:+30166078 Msa0018070:CDS
ATTGCTCGCAAAGAATAAAC+CGG 0.537284 1_1:+30165347 Msa0018070:CDS
AAGGTTGCGTTGGTGGAAGA+AGG 0.538669 1_1:+30165952 Msa0018070:CDS
GATTGAGTCGGAGTGAAGAT+CGG 0.540044 1_1:-30165292 None:intergenic
GCCGGAGGCGAAGGTTGCGT+TGG 0.541900 1_1:+30165942 Msa0018070:CDS
AGTTTGTGGTGTAAATCATA+CGG 0.546547 1_1:+30168553 Msa0018070:three_prime_UTR
TGCGAGCAATCGAATTTCCA+TGG 0.550132 1_1:-30165334 None:intergenic
TACGAAAGGAGAATTTATAT+GGG 0.554574 1_1:-30164979 None:intergenic
GAAGATCGGAGACAAGTTGA+CGG 0.556676 1_1:-30165278 None:intergenic
GACCTGCAACTTCAAGAATA+CGG 0.556927 1_1:+30165435 Msa0018070:CDS
TCATCCTACACCCCAAGACT+TGG 0.561204 1_1:+30164925 None:intergenic
AGAAGGTGGTGTGCCGGTGT+TGG 0.561302 1_1:+30165969 Msa0018070:CDS
AGAACAGAAACAAGCTGCCA+TGG 0.562865 1_1:+30165317 Msa0018070:CDS
GAATTTAACGCTCTAACTAA+CGG 0.564280 1_1:-30165531 None:intergenic
GGTGGAAGAAGGTGGTGTGC+CGG 0.565802 1_1:+30165963 Msa0018070:CDS
TCGTCGGGAGGTAGAAGAAG+TGG 0.568427 1_1:-30165214 None:intergenic
AGAAACTAATTGAGCTTCTG+AGG 0.580867 1_1:+30168336 Msa0018070:CDS
AAGTGGTGGTGAGGAAGAGA+GGG 0.582060 1_1:+30166964 Msa0018070:CDS
TCCACAATCTCAACCAACAC+CGG 0.586132 1_1:-30165982 None:intergenic
GGAATTCGAAAGTGGTGGTG+AGG 0.588248 1_1:+30166955 Msa0018070:CDS
GTATACTCTGTGTTCTGTGA+AGG 0.596489 1_1:+30165801 Msa0018070:CDS
GTAACCAAGTCTTGGGGTGT+AGG 0.598630 1_1:-30164929 None:intergenic
GTTGTGAGGGAATTCGAAAG+TGG 0.601499 1_1:+30166947 Msa0018070:CDS
CTAGGAAGTGGAGGAATACG+CGG 0.602566 1_1:+30165754 Msa0018070:CDS
GGATAATGTTGTTGTTGTGA+GGG 0.603402 1_1:+30166934 Msa0018070:intron
TAAGATGAGAGCGGTGAAAG+CGG 0.603828 1_1:+30165828 Msa0018070:CDS
GGTTGGATCGCAGAGACAGA+AGG 0.604932 1_1:+30166005 Msa0018070:CDS
GGCACCTTCACGAGCCACCA+TGG 0.605176 1_1:-30166082 None:intergenic
AGGATAATGTTGTTGTTGTG+AGG 0.605414 1_1:+30166933 Msa0018070:intron
TATTCTGTTACAGATTTGTG+AGG 0.606208 1_1:+30166041 Msa0018070:CDS
GTTGCGTTGGTGGAAGAAGG+TGG 0.609924 1_1:+30165955 Msa0018070:CDS
ATTACAGGTGGAAGAGAACA+AGG 0.611067 1_1:+30165687 Msa0018070:intron
AGTGTTGGTTGAGTTGATGG+CGG 0.612937 1_1:+30165861 Msa0018070:CDS
TGCGTCAAAGCAACCAAAGG+AGG 0.612998 1_1:-30166108 None:intergenic
ACTGTTGCAGTCACTGAAAG+CGG 0.614710 1_1:-30165169 None:intergenic
GGCGAGGAAGAGTCGTCGGG+AGG 0.616350 1_1:-30165226 None:intergenic
GTGAATCTTCTAGGAAGTGG+AGG 0.623068 1_1:+30165745 Msa0018070:CDS
AGATGAGAGCGGTGAAAGCG+GGG 0.626464 1_1:+30165830 Msa0018070:CDS
TAGACGAAGAAGTGTACGAA+AGG 0.629451 1_1:-30164993 None:intergenic
GACTGCGTCAAAGCAACCAA+AGG 0.631800 1_1:-30166111 None:intergenic
AGCGGGGATAATGAAAGTGT+TGG 0.635236 1_1:+30165846 Msa0018070:CDS
TAGGAAGTGGAGGAATACGC+GGG 0.637423 1_1:+30165755 Msa0018070:CDS
TGTGTTGGTATCGGTGCCGG+AGG 0.656005 1_1:+30165927 Msa0018070:CDS
AAGTTGACGGATGAGGTCAT+CGG 0.659006 1_1:-30165265 None:intergenic
TCGGGAGGTAGAAGAAGTGG+TGG 0.663074 1_1:-30165211 None:intergenic
ACATGTGTAACCAAGTCTTG+GGG 0.663090 1_1:-30164935 None:intergenic
GCAGAGACAGAAGGAAATTG+CGG 0.663880 1_1:+30166014 Msa0018070:CDS
GTGAGGGAATTCGAAAGTGG+TGG 0.668042 1_1:+30166950 Msa0018070:CDS
ACAGAGAGTTACACATACAT+GGG 0.672322 1_1:+30165102 Msa0018070:CDS
TAATAACCTGAGATAGACGA+AGG 0.681280 1_1:-30165593 None:intergenic
ACAGATTTGTGAGGATAGCG+CGG 0.684005 1_1:+30166050 Msa0018070:CDS
GTTGCAGTCACTGAAAGCGG+AGG 0.687507 1_1:-30165166 None:intergenic
CGCGGCGGTTCGATCCATGG+TGG 0.687911 1_1:+30166068 Msa0018070:CDS
CAAAGAGAGATTCAAAATCG+CGG 0.688714 1_1:-30165463 None:intergenic
GGTGTTGGTTGAGATTGTGG+AGG 0.688844 1_1:+30165984 Msa0018070:CDS
GAAGGAGAATAAGATGAGAG+CGG 0.703303 1_1:+30165819 Msa0018070:CDS
GAGACAGAAGGAAATTGCGG+CGG 0.714686 1_1:+30166017 Msa0018070:CDS
TTGTTAAGGTGTAAACATCG+TGG 0.748984 1_1:+30168440 Msa0018070:three_prime_UTR
ACTTCTTCGTCTACACACCG+TGG 0.760862 1_1:+30165003 Msa0018070:five_prime_UTR
GATTTGTGAGGATAGCGCGG+CGG 0.801712 1_1:+30166053 Msa0018070:CDS
ACAGGTGGAAGAGAACAAGG+CGG 0.815311 1_1:+30165690 Msa0018070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTAAATATTAAATGA+AGG + chr1_1:30167654-30167673 Msa0018070:intron 10.0%
!! TAGTTTAAATATTAAATGAA+GGG + chr1_1:30167655-30167674 Msa0018070:intron 10.0%
!! TAATAAATTAATAATAATGC+AGG - chr1_1:30168077-30168096 None:intergenic 10.0%
!!! TTTGTTTTCAATTTAATTAG+AGG + chr1_1:30167452-30167471 Msa0018070:intron 15.0%
!! ATTAATTAACTAGATATCAA+TGG + chr1_1:30167497-30167516 Msa0018070:intron 15.0%
!!! TAATAATGTTTTTCTGTTTT+TGG + chr1_1:30168300-30168319 Msa0018070:intron 15.0%
!!! TTGATTATTGTAAGTTCTAA+CGG + chr1_1:30165659-30165678 Msa0018070:intron 20.0%
!!! ATAATATTCTACCTTTTGTT+TGG - chr1_1:30166151-30166170 None:intergenic 20.0%
!! AAATTGCTCAAAAAAAACTA+GGG - chr1_1:30167268-30167287 None:intergenic 20.0%
!! AAAATTGCTCAAAAAAAACT+AGG - chr1_1:30167267-30167286 None:intergenic 20.0%
!!! TGATTTAGAATCTAATTTCT+AGG - chr1_1:30166614-30166633 None:intergenic 20.0%
!! ACAGTATTCAATTGAAATAA+TGG + chr1_1:30166860-30166879 Msa0018070:intron 20.0%
!!! GGACTTTAAAATCAAAAAAA+GGG + chr1_1:30167229-30167248 Msa0018070:intron 20.0%
!!! TAGTTTTTTTTGAGCAATTT+TGG - chr1_1:30166396-30166415 None:intergenic 20.0%
!! AAATTGCTCAAAAAAAACTA+AGG + chr1_1:30167268-30167287 Msa0018070:intron 20.0%
!! AATTGCTCAAAAAAAACTAA+GGG + chr1_1:30167269-30167288 Msa0018070:intron 20.0%
!! CATTTAAGCCTTTAAATTAT+TGG + chr1_1:30167334-30167353 Msa0018070:intron 20.0%
!! AATTTGAGCCAATAATTTAA+AGG - chr1_1:30167345-30167364 None:intergenic 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG - chr1_1:30167719-30167738 None:intergenic 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG - chr1_1:30167720-30167739 None:intergenic 20.0%
!! TCTTGAATATTCTTATTGAA+TGG + chr1_1:30168128-30168147 Msa0018070:intron 20.0%
!! CTTGAATATTCTTATTGAAT+GGG + chr1_1:30168129-30168148 Msa0018070:intron 20.0%
!! GTTTGTAAATATCTTCTTAA+CGG + chr1_1:30168517-30168536 Msa0018070:three_prime_UTR 20.0%
!! AGAAAAGAATAAAATGTTAC+TGG + chr1_1:30168636-30168655 Msa0018070:three_prime_UTR 20.0%
! TACGAAAGGAGAATTTATAT+GGG - chr1_1:30164982-30165001 None:intergenic 25.0%
! GAAGTAACTAACGAAATTAA+TGG - chr1_1:30165411-30165430 None:intergenic 25.0%
! GATGTAATAGTTAGTTATAC+CGG + chr1_1:30165616-30165635 Msa0018070:intron 25.0%
! GACAACAACTAATAATTAAC+CGG - chr1_1:30165638-30165657 None:intergenic 25.0%
!!! TCCTGAATTTTGTTTTTACT+CGG + chr1_1:30166299-30166318 Msa0018070:intron 25.0%
! AATTGCTCAAAAAAAACTAG+GGG - chr1_1:30166395-30166414 None:intergenic 25.0%
! AATCAAAAAAGGGTAAATGT+GGG - chr1_1:30166425-30166444 None:intergenic 25.0%
! AAATCAAAAAAGGGTAAATG+TGG - chr1_1:30166426-30166445 None:intergenic 25.0%
! AAAAAATTATCAGGTGTGAA+AGG - chr1_1:30166508-30166527 None:intergenic 25.0%
! TGAAAAGGGAAAAAATTATC+AGG - chr1_1:30166517-30166536 None:intergenic 25.0%
! AACAGTTCCTAAGAAATTAT+GGG - chr1_1:30166712-30166731 None:intergenic 25.0%
!!! GGGACTTTAAAATCAAAAAA+AGG + chr1_1:30167228-30167247 Msa0018070:intron 25.0%
! AATCAAAAAAAGGGTAAATG+TGG + chr1_1:30167238-30167257 Msa0018070:intron 25.0%
! ATCAAAAAAAGGGTAAATGT+GGG + chr1_1:30167239-30167258 Msa0018070:intron 25.0%
! ATTGCTCAAAAAAAACTAAG+GGG + chr1_1:30167270-30167289 Msa0018070:intron 25.0%
!! GTTTTCTAATTGTGCAATTT+TGG - chr1_1:30167297-30167316 None:intergenic 25.0%
! AATTGCACAATTAGAAAACT+TGG + chr1_1:30167298-30167317 Msa0018070:intron 25.0%
! ATTGCACAATTAGAAAACTT+GGG + chr1_1:30167299-30167318 Msa0018070:intron 25.0%
! AAAAGAAGAGTTTCGATTTA+GGG - chr1_1:30167429-30167448 None:intergenic 25.0%
! CAAGCTGAATAATTCTTTAA+GGG - chr1_1:30167860-30167879 None:intergenic 25.0%
! TCAAGCTGAATAATTCTTTA+AGG - chr1_1:30167861-30167880 None:intergenic 25.0%
! TTAGACACAATTAGACAATA+GGG - chr1_1:30168016-30168035 None:intergenic 25.0%
! ATTAGACACAATTAGACAAT+AGG - chr1_1:30168017-30168036 None:intergenic 25.0%
! TTTAAGAACTATTTATGTCG+TGG + chr1_1:30168163-30168182 Msa0018070:intron 25.0%
!!! TAATGTTTTTCTGTTTTTGG+TGG + chr1_1:30168303-30168322 Msa0018070:intron 25.0%
!!! AATGTTTTTCTGTTTTTGGT+GGG + chr1_1:30168304-30168323 Msa0018070:intron 25.0%
!!! AAACCCTAGCAATTATTTTA+TGG + chr1_1:30168392-30168411 Msa0018070:three_prime_UTR 25.0%
!!! TTGAGTTTTGTTTGCTTTTT+TGG + chr1_1:30168577-30168596 Msa0018070:three_prime_UTR 25.0%
GTACGAAAGGAGAATTTATA+TGG - chr1_1:30164983-30165002 None:intergenic 30.0%
!!! GCAATTTTGATTCGATTTTC+CGG - chr1_1:30165369-30165388 None:intergenic 30.0%
AATTTCGTTAGTTACTTCAC+AGG + chr1_1:30165413-30165432 Msa0018070:CDS 30.0%
AAAGAACTAATAGCTTCTTC+CGG + chr1_1:30165498-30165517 Msa0018070:CDS 30.0%
GAATTTAACGCTCTAACTAA+CGG - chr1_1:30165534-30165553 None:intergenic 30.0%
! TTAGTTAGAGCGTTAAATTC+AGG + chr1_1:30165534-30165553 Msa0018070:CDS 30.0%
!! ATCGAATATGGTGGATAAAT+CGG + chr1_1:30165891-30165910 Msa0018070:CDS 30.0%
TATTCTGTTACAGATTTGTG+AGG + chr1_1:30166041-30166060 Msa0018070:CDS 30.0%
AATTGCACAGTTAGAAAACT+TGG - chr1_1:30166366-30166385 None:intergenic 30.0%
! GTTTTCTAACTGTGCAATTT+TGG + chr1_1:30166367-30166386 Msa0018070:intron 30.0%
ATTGCTCAAAAAAAACTAGG+GGG - chr1_1:30166394-30166413 None:intergenic 30.0%
ATCAAAAAAGGGTAAATGTG+GGG - chr1_1:30166424-30166443 None:intergenic 30.0%
GGGACTTTCAAATCAAAAAA+GGG - chr1_1:30166435-30166454 None:intergenic 30.0%
! CTAATTTCTAGGTTTGTGTT+TGG - chr1_1:30166603-30166622 None:intergenic 30.0%
GAACAGTTCCTAAGAAATTA+TGG - chr1_1:30166713-30166732 None:intergenic 30.0%
GAATCAAAGTCATCTTCATT+AGG - chr1_1:30166834-30166853 None:intergenic 30.0%
!! AGAAATAAAGAGGTGTTCAA+CGG + chr1_1:30167081-30167100 Msa0018070:intron 30.0%
ATGAAAGAGGGAAAATTATC+AGG + chr1_1:30167146-30167165 Msa0018070:intron 30.0%
TCAAAAAAAGGGTAAATGTG+GGG + chr1_1:30167240-30167259 Msa0018070:intron 30.0%
TTGCACAATTAGAAAACTTG+GGG + chr1_1:30167300-30167319 Msa0018070:intron 30.0%
GAAAAGAAGAGTTTCGATTT+AGG - chr1_1:30167430-30167449 None:intergenic 30.0%
AATGTTAACTTATGCTCTCA+AGG - chr1_1:30167836-30167855 None:intergenic 30.0%
TTCATTATTGTCCAAACATG+TGG - chr1_1:30168236-30168255 None:intergenic 30.0%
GCACCATAAAATAATTGCTA+GGG - chr1_1:30168398-30168417 None:intergenic 30.0%
AGCACCATAAAATAATTGCT+AGG - chr1_1:30168399-30168418 None:intergenic 30.0%
AGTTTGTGGTGTAAATCATA+CGG + chr1_1:30168553-30168572 Msa0018070:three_prime_UTR 30.0%
TACATGTGTAACCAAGTCTT+GGG - chr1_1:30164939-30164958 None:intergenic 35.0%
TTACATGTGTAACCAAGTCT+TGG - chr1_1:30164940-30164959 None:intergenic 35.0%
GAGAATTTATATGGGAGAGA+GGG - chr1_1:30164974-30164993 None:intergenic 35.0%
AACAGAGAGTTACACATACA+TGG + chr1_1:30165101-30165120 Msa0018070:CDS 35.0%
ACAGAGAGTTACACATACAT+GGG + chr1_1:30165102-30165121 Msa0018070:CDS 35.0%
TTTCTGTTCTTCGATTGAGT+CGG - chr1_1:30165307-30165326 None:intergenic 35.0%
ATTGCTCGCAAAGAATAAAC+CGG + chr1_1:30165347-30165366 Msa0018070:CDS 35.0%
CGAATCAAAATTGCTAAAGC+TGG + chr1_1:30165375-30165394 Msa0018070:CDS 35.0%
CAAAGAGAGATTCAAAATCG+CGG - chr1_1:30165466-30165485 None:intergenic 35.0%
AACTAACGGTTTAATAGCTC+CGG - chr1_1:30165520-30165539 None:intergenic 35.0%
TAATAACCTGAGATAGACGA+AGG - chr1_1:30165596-30165615 None:intergenic 35.0%
GTTCTAACGGTAATGATTAC+AGG + chr1_1:30165672-30165691 Msa0018070:intron 35.0%
CCTAGAAGATTCACCAATAA+CGG - chr1_1:30165739-30165758 None:intergenic 35.0%
! GGATTTTGAATCGAATATGG+TGG + chr1_1:30165882-30165901 Msa0018070:CDS 35.0%
!! TGTTTTGAGTGTGTTGGTAT+CGG + chr1_1:30165918-30165937 Msa0018070:CDS 35.0%
GCCGAGTAAAAACAAAATTC+AGG - chr1_1:30166303-30166322 None:intergenic 35.0%
! CGGCTAGTTCGATTTAAATT+AGG + chr1_1:30166319-30166338 Msa0018070:intron 35.0%
TCAAAAAAGGGTAAATGTGG+GGG - chr1_1:30166423-30166442 None:intergenic 35.0%
GGGGACTTTCAAATCAAAAA+AGG - chr1_1:30166436-30166455 None:intergenic 35.0%
AAACAAATCCAACCGCATAT+GGG - chr1_1:30167201-30167220 None:intergenic 35.0%
! ATTTCTAGGTTTGTGTTTGG+TGG - chr1_1:30166600-30166619 None:intergenic 35.0%
TGCAATGAATTGAACACTCT+TGG - chr1_1:30166678-30166697 None:intergenic 35.0%
AGACTTGCCCATAATTTCTT+AGG + chr1_1:30166702-30166721 Msa0018070:intron 35.0%
GAAGTTGAATGTAGTGAATG+GGG - chr1_1:30166787-30166806 None:intergenic 35.0%
GGAAGTTGAATGTAGTGAAT+GGG - chr1_1:30166788-30166807 None:intergenic 35.0%
AGGAAGTTGAATGTAGTGAA+TGG - chr1_1:30166789-30166808 None:intergenic 35.0%
GAACACATTGAAACGTAAAG+AGG - chr1_1:30166809-30166828 None:intergenic 35.0%
TCAAAGTCATCTTCATTAGG+AGG - chr1_1:30166831-30166850 None:intergenic 35.0%
! AGGATAATGTTGTTGTTGTG+AGG + chr1_1:30166933-30166952 Msa0018070:intron 35.0%
! GGATAATGTTGTTGTTGTGA+GGG + chr1_1:30166934-30166953 Msa0018070:intron 35.0%
AGTTTGAATGAGGTTTATGG+TGG + chr1_1:30166995-30167014 Msa0018070:intron 35.0%
GTTTGAATGAGGTTTATGGT+GGG + chr1_1:30166996-30167015 Msa0018070:intron 35.0%
AAAGGGATGGAGAAATAAAG+AGG + chr1_1:30167071-30167090 Msa0018070:intron 35.0%
TGGAAGATAACAGATGAAAG+AGG + chr1_1:30167133-30167152 Msa0018070:intron 35.0%
GGAAGATAACAGATGAAAGA+GGG + chr1_1:30167134-30167153 Msa0018070:intron 35.0%
GGAAAATTATCAGGTGTGAA+AGG + chr1_1:30167155-30167174 Msa0018070:intron 35.0%
AAACAAATCCAACCGCATAT+GGG + chr1_1:30167201-30167220 Msa0018070:intron 35.0%
CAAAAAAAGGGTAAATGTGG+GGG + chr1_1:30167241-30167260 Msa0018070:intron 35.0%
TGCACAATTAGAAAACTTGG+GGG + chr1_1:30167301-30167320 Msa0018070:intron 35.0%
GGTTCGAATTCTTCATTGAT+TGG + chr1_1:30167518-30167537 Msa0018070:intron 35.0%
!! TCATGTTAACTTGTGTCCTT+AGG + chr1_1:30167678-30167697 Msa0018070:intron 35.0%
!! CATGTTAACTTGTGTCCTTA+GGG + chr1_1:30167679-30167698 Msa0018070:intron 35.0%
CATGTTAAGCAACCCAAAAA+TGG + chr1_1:30167704-30167723 Msa0018070:intron 35.0%
TCTTCCACCAAAGCAATAAA+CGG - chr1_1:30167930-30167949 None:intergenic 35.0%
AGACAATAGGGCAAAAATTG+CGG - chr1_1:30168004-30168023 None:intergenic 35.0%
AGAAACTAATTGAGCTTCTG+AGG + chr1_1:30168336-30168355 Msa0018070:CDS 35.0%
CATTCTGATGTTGTAGATCT+TGG - chr1_1:30168365-30168384 None:intergenic 35.0%
TTGTTAAGGTGTAAACATCG+TGG + chr1_1:30168440-30168459 Msa0018070:three_prime_UTR 35.0%
TGGTCAAGAACACAATGAAT+TGG + chr1_1:30168460-30168479 Msa0018070:three_prime_UTR 35.0%
! GAGAAGCTTTGTAAAGTTTG+TGG + chr1_1:30168539-30168558 Msa0018070:three_prime_UTR 35.0%
ACATGTGTAACCAAGTCTTG+GGG - chr1_1:30164938-30164957 None:intergenic 40.0%
GGAGAATTTATATGGGAGAG+AGG - chr1_1:30164975-30164994 None:intergenic 40.0%
! TAGACGAAGAAGTGTACGAA+AGG - chr1_1:30164996-30165015 None:intergenic 40.0%
GTTAGGCTTGGAATTAGGTT+CGG - chr1_1:30165064-30165083 None:intergenic 40.0%
TTTGCGTTAGGCTTGGAATT+AGG - chr1_1:30165069-30165088 None:intergenic 40.0%
GTAACTCTCTGTTCCCATAT+CGG - chr1_1:30165094-30165113 None:intergenic 40.0%
! GATGAGGTCATCGGAATTTT+CGG - chr1_1:30165259-30165278 None:intergenic 40.0%
GACCTGCAACTTCAAGAATA+CGG + chr1_1:30165435-30165454 Msa0018070:CDS 40.0%
CTAACGGTAATGATTACAGG+TGG + chr1_1:30165675-30165694 Msa0018070:intron 40.0%
ATTACAGGTGGAAGAGAACA+AGG + chr1_1:30165687-30165706 Msa0018070:intron 40.0%
ATCAGGTGCAATTCCGTTAT+TGG + chr1_1:30165723-30165742 Msa0018070:CDS 40.0%
CCGTTATTGGTGAATCTTCT+AGG + chr1_1:30165736-30165755 Msa0018070:CDS 40.0%
! TTGGTGAATCTTCTAGGAAG+TGG + chr1_1:30165742-30165761 Msa0018070:CDS 40.0%
GTATACTCTGTGTTCTGTGA+AGG + chr1_1:30165801-30165820 Msa0018070:CDS 40.0%
GAAGGAGAATAAGATGAGAG+CGG + chr1_1:30165819-30165838 Msa0018070:CDS 40.0%
!! GAAAGTGTTGGTTGAGTTGA+TGG + chr1_1:30165858-30165877 Msa0018070:CDS 40.0%
!! GGCGGATTTTGAATCGAATA+TGG + chr1_1:30165879-30165898 Msa0018070:CDS 40.0%
!! GGCTTATGTTTTGAGTGTGT+TGG + chr1_1:30165912-30165931 Msa0018070:CDS 40.0%
TGCACAGTTAGAAAACTTGG+AGG - chr1_1:30166363-30166382 None:intergenic 40.0%
GAAACAAATCCAACCGCATA+TGG - chr1_1:30166463-30166482 None:intergenic 40.0%
! TGGTGGTAATGAGAAAGCAT+GGG - chr1_1:30166583-30166602 None:intergenic 40.0%
! TTGGTGGTAATGAGAAAGCA+TGG - chr1_1:30166584-30166603 None:intergenic 40.0%
GGGAGTTTGAATGAGGTTTA+TGG + chr1_1:30166992-30167011 Msa0018070:intron 40.0%
TGGTGACAGGTTAACAATTG+CGG + chr1_1:30167022-30167041 Msa0018070:intron 40.0%
!! AAAGTACCGTTGAAGGAAGA+CGG + chr1_1:30167046-30167065 Msa0018070:intron 40.0%
CAAACAAATCCAACCGCATA+TGG + chr1_1:30167200-30167219 Msa0018070:intron 40.0%
AATAGGGCAAAAATTGCGGT+GGG - chr1_1:30168000-30168019 None:intergenic 40.0%
CGTATGAAATGAACGCAATG+AGG - chr1_1:30168049-30168068 None:intergenic 40.0%
CTATAGTAGTGCCACATGTT+TGG + chr1_1:30168222-30168241 Msa0018070:intron 40.0%
!!! TTTCTGTTTTTGGTGGGTTC+AGG + chr1_1:30168310-30168329 Msa0018070:intron 40.0%
! AATCTCACACGTGCTTGTTA+AGG + chr1_1:30168426-30168445 Msa0018070:three_prime_UTR 40.0%
GGAATTAGGTTCGGATGCTA+TGG - chr1_1:30165055-30165074 None:intergenic 45.0%
CCTAACGCAAACACCGATAT+GGG + chr1_1:30165078-30165097 Msa0018070:exon 45.0%
GGAAGTTGAATCGTCGTTGA+TGG - chr1_1:30165148-30165167 None:intergenic 45.0%
ACTGTTGCAGTCACTGAAAG+CGG - chr1_1:30165172-30165191 None:intergenic 45.0%
! AAGTTGACGGATGAGGTCAT+CGG - chr1_1:30165268-30165287 None:intergenic 45.0%
! GAAGATCGGAGACAAGTTGA+CGG - chr1_1:30165281-30165300 None:intergenic 45.0%
GATTGAGTCGGAGTGAAGAT+CGG - chr1_1:30165295-30165314 None:intergenic 45.0%
AGAACAGAAACAAGCTGCCA+TGG + chr1_1:30165317-30165336 Msa0018070:CDS 45.0%
TGCGAGCAATCGAATTTCCA+TGG - chr1_1:30165337-30165356 None:intergenic 45.0%
CACCGTATTCTTGAAGTTGC+AGG - chr1_1:30165440-30165459 None:intergenic 45.0%
! GTGAATCTTCTAGGAAGTGG+AGG + chr1_1:30165745-30165764 Msa0018070:CDS 45.0%
TAAGATGAGAGCGGTGAAAG+CGG + chr1_1:30165828-30165847 Msa0018070:CDS 45.0%
! AGCGGGGATAATGAAAGTGT+TGG + chr1_1:30165846-30165865 Msa0018070:CDS 45.0%
!! AGTGTTGGTTGAGTTGATGG+CGG + chr1_1:30165861-30165880 Msa0018070:CDS 45.0%
TCCACAATCTCAACCAACAC+CGG - chr1_1:30165985-30166004 None:intergenic 45.0%
TTGGTTGAGATTGTGGAGGT+TGG + chr1_1:30165988-30166007 Msa0018070:CDS 45.0%
GCAGAGACAGAAGGAAATTG+CGG + chr1_1:30166014-30166033 Msa0018070:CDS 45.0%
ACAGATTTGTGAGGATAGCG+CGG + chr1_1:30166050-30166069 Msa0018070:CDS 45.0%
CAAAGCAACCAAAGGAGGAA+TGG - chr1_1:30166106-30166125 None:intergenic 45.0%
CACAAATCGCGCCAAACAAA+AGG + chr1_1:30166137-30166156 Msa0018070:CDS 45.0%
GGGGATGGAAGAGATGAAAA+GGG - chr1_1:30166531-30166550 None:intergenic 45.0%
TGGGGATGGAAGAGATGAAA+AGG - chr1_1:30166532-30166551 None:intergenic 45.0%
! TCATAGTGCTTGCTGAGATG+GGG - chr1_1:30166558-30166577 None:intergenic 45.0%
! GTCATAGTGCTTGCTGAGAT+GGG - chr1_1:30166559-30166578 None:intergenic 45.0%
! AGTCATAGTGCTTGCTGAGA+TGG - chr1_1:30166560-30166579 None:intergenic 45.0%
AGAAGAGGAAACGTAGAGAG+AGG - chr1_1:30166753-30166772 None:intergenic 45.0%
TACGTTTCCTCTTCTCCATG+TGG + chr1_1:30166758-30166777 Msa0018070:intron 45.0%
! ACTGCATGTGTTGTTGGATC+AGG + chr1_1:30166913-30166932 Msa0018070:intron 45.0%
GTTGTGAGGGAATTCGAAAG+TGG + chr1_1:30166947-30166966 Msa0018070:CDS 45.0%
GGTATGTGGGAGTTTGAATG+AGG + chr1_1:30166985-30167004 Msa0018070:intron 45.0%
!! ATGAGGTTTATGGTGGGTGA+TGG + chr1_1:30167002-30167021 Msa0018070:intron 45.0%
CTTTCACCGTCTTCCTTCAA+CGG - chr1_1:30167055-30167074 None:intergenic 45.0%
GTTGAAGGAAGACGGTGAAA+GGG + chr1_1:30167054-30167073 Msa0018070:intron 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr1_1:30167697-30167716 None:intergenic 45.0%
!! CATGGTGCCGTTTATTGCTT+TGG + chr1_1:30167920-30167939 Msa0018070:intron 45.0%
CAATAGGGCAAAAATTGCGG+TGG - chr1_1:30168001-30168020 None:intergenic 45.0%
TGTCGTGGAAGCTTATCATG+CGG + chr1_1:30168178-30168197 Msa0018070:intron 45.0%
!! ATTTAATATTTAAACTAAAA+TGG - chr1_1:30167652-30167671 None:intergenic 5.0%
GTAACCAAGTCTTGGGGTGT+AGG - chr1_1:30164932-30164951 None:intergenic 50.0%
ACTTCTTCGTCTACACACCG+TGG + chr1_1:30165003-30165022 Msa0018070:five_prime_UTR 50.0%
GGATGCTATGGTTGTGGTTC+GGG - chr1_1:30165043-30165062 None:intergenic 50.0%
CGGATGCTATGGTTGTGGTT+CGG - chr1_1:30165044-30165063 None:intergenic 50.0%
AGGTTCGGATGCTATGGTTG+TGG - chr1_1:30165049-30165068 None:intergenic 50.0%
! ATCGGTGTTTGCGTTAGGCT+TGG - chr1_1:30165076-30165095 None:intergenic 50.0%
GCCTAACGCAAACACCGATA+TGG + chr1_1:30165077-30165096 Msa0018070:exon 50.0%
! CCCATATCGGTGTTTGCGTT+AGG - chr1_1:30165081-30165100 None:intergenic 50.0%
GACTGCAACAGTGACAGATC+CGG + chr1_1:30165180-30165199 Msa0018070:CDS 50.0%
!! ATCGGAATTTTCGGAAGCGC+AGG - chr1_1:30165250-30165269 None:intergenic 50.0%
TGCTCTCCTTCGTCTATCTC+AGG + chr1_1:30165587-30165606 Msa0018070:CDS 50.0%
ACAGGTGGAAGAGAACAAGG+CGG + chr1_1:30165690-30165709 Msa0018070:intron 50.0%
CTAGGAAGTGGAGGAATACG+CGG + chr1_1:30165754-30165773 Msa0018070:CDS 50.0%
TAGGAAGTGGAGGAATACGC+GGG + chr1_1:30165755-30165774 Msa0018070:CDS 50.0%
AAGATGAGAGCGGTGAAAGC+GGG + chr1_1:30165829-30165848 Msa0018070:CDS 50.0%
! AAGGTTGCGTTGGTGGAAGA+AGG + chr1_1:30165952-30165971 Msa0018070:CDS 50.0%
!! GGTGTTGGTTGAGATTGTGG+AGG + chr1_1:30165984-30166003 Msa0018070:CDS 50.0%
GAGACAGAAGGAAATTGCGG+CGG + chr1_1:30166017-30166036 Msa0018070:CDS 50.0%
!! TGAAGGTGCCATTCCTCCTT+TGG + chr1_1:30166095-30166114 Msa0018070:CDS 50.0%
TGCGTCAAAGCAACCAAAGG+AGG - chr1_1:30166111-30166130 None:intergenic 50.0%
GACTGCGTCAAAGCAACCAA+AGG - chr1_1:30166114-30166133 None:intergenic 50.0%
! TTGGTTGCTTTGACGCAGTC+CGG + chr1_1:30166114-30166133 Msa0018070:CDS 50.0%
TTGTTTGGCGCGATTTGTGC+CGG - chr1_1:30166136-30166155 None:intergenic 50.0%
AAAGTCCCCACACCCATATG+CGG + chr1_1:30166447-30166466 Msa0018070:intron 50.0%
ATCCAACCGCATATGGGTGT+GGG - chr1_1:30167207-30167226 None:intergenic 50.0%
AATCCAACCGCATATGGGTG+TGG - chr1_1:30167206-30167225 None:intergenic 50.0%
CTTGCTGAGATGGGGAATTG+GGG - chr1_1:30166550-30166569 None:intergenic 50.0%
! GCTTGCTGAGATGGGGAATT+GGG - chr1_1:30166551-30166570 None:intergenic 50.0%
! TGCTTGCTGAGATGGGGAAT+TGG - chr1_1:30166552-30166571 None:intergenic 50.0%
TAGTGAATGGGGAGACCACA+TGG - chr1_1:30166776-30166795 None:intergenic 50.0%
CCAACAACACATGCAGTCGA+AGG - chr1_1:30166910-30166929 None:intergenic 50.0%
CCTTCGACTGCATGTGTTGT+TGG + chr1_1:30166907-30166926 Msa0018070:intron 50.0%
GTGAGGGAATTCGAAAGTGG+TGG + chr1_1:30166950-30166969 Msa0018070:CDS 50.0%
! GGAATTCGAAAGTGGTGGTG+AGG + chr1_1:30166955-30166974 Msa0018070:CDS 50.0%
! AAAGTGGTGGTGAGGAAGAG+AGG + chr1_1:30166963-30166982 Msa0018070:CDS 50.0%
! AAGTGGTGGTGAGGAAGAGA+GGG + chr1_1:30166964-30166983 Msa0018070:CDS 50.0%
! GTGAGGAAGAGAGGGTATGT+GGG + chr1_1:30166972-30166991 Msa0018070:intron 50.0%
!! TTATGGTGGGTGATGGTGAC+AGG + chr1_1:30167009-30167028 Msa0018070:intron 50.0%
!! TTGCGGCAAAGTACCGTTGA+AGG + chr1_1:30167039-30167058 Msa0018070:intron 50.0%
CGTTGAAGGAAGACGGTGAA+AGG + chr1_1:30167053-30167072 Msa0018070:intron 50.0%
AAGGAAGACGGTGAAAGGGA+TGG + chr1_1:30167058-30167077 Msa0018070:intron 50.0%
GGAGTCAACTGTACGCTGAA+GGG + chr1_1:30167102-30167121 Msa0018070:intron 50.0%
TCAACTGTACGCTGAAGGGA+GGG + chr1_1:30167106-30167125 Msa0018070:intron 50.0%
AATCCAACCGCATATGGGTG+TGG + chr1_1:30167206-30167225 Msa0018070:intron 50.0%
ATCCAACCGCATATGGGTGT+GGG + chr1_1:30167207-30167226 Msa0018070:intron 50.0%
AAAGTCCCCACACCCATATG+CGG - chr1_1:30166447-30166466 None:intergenic 50.0%
AGCATTGCTCCCTCAACTTG+CGG + chr1_1:30167885-30167904 Msa0018070:intron 50.0%
!! GGTGCCGTTTATTGCTTTGG+TGG + chr1_1:30167923-30167942 Msa0018070:intron 50.0%
GCAAGAACAATGAGTCGACG+TGG - chr1_1:30167963-30167982 None:intergenic 50.0%
!! TGTGGTTCGGGTTGGAGGTT+CGG - chr1_1:30165031-30165050 None:intergenic 55.0%
!! ATGGTTGTGGTTCGGGTTGG+AGG - chr1_1:30165036-30165055 None:intergenic 55.0%
! GCTATGGTTGTGGTTCGGGT+TGG - chr1_1:30165039-30165058 None:intergenic 55.0%
GTTGCAGTCACTGAAAGCGG+AGG - chr1_1:30165169-30165188 None:intergenic 55.0%
! AGAAGTGGTGGCGAATTCGC+CGG - chr1_1:30165202-30165221 None:intergenic 55.0%
TCGGGAGGTAGAAGAAGTGG+TGG - chr1_1:30165214-30165233 None:intergenic 55.0%
TCGTCGGGAGGTAGAAGAAG+TGG - chr1_1:30165217-30165236 None:intergenic 55.0%
!! AATTTTCGGAAGCGCAGGCG+AGG - chr1_1:30165245-30165264 None:intergenic 55.0%
! CGGAGACAAGTTGACGGATG+AGG - chr1_1:30165275-30165294 None:intergenic 55.0%
GAAGAGAACAAGGCGGCGAT+TGG + chr1_1:30165697-30165716 Msa0018070:CDS 55.0%
AAGGCGGCGATTGGAAGATC+AGG + chr1_1:30165706-30165725 Msa0018070:CDS 55.0%
TGGAGGAATACGCGGGAAGA+AGG + chr1_1:30165762-30165781 Msa0018070:CDS 55.0%
AGATGAGAGCGGTGAAAGCG+GGG + chr1_1:30165830-30165849 Msa0018070:CDS 55.0%
!! GAGTGTGTTGGTATCGGTGC+CGG + chr1_1:30165924-30165943 Msa0018070:CDS 55.0%
! GTTGCGTTGGTGGAAGAAGG+TGG + chr1_1:30165955-30165974 Msa0018070:CDS 55.0%
!! GCCGGTGTTGGTTGAGATTG+TGG + chr1_1:30165981-30166000 Msa0018070:CDS 55.0%
GGTTGGATCGCAGAGACAGA+AGG + chr1_1:30166005-30166024 Msa0018070:CDS 55.0%
GATTTGTGAGGATAGCGCGG+CGG + chr1_1:30166053-30166072 Msa0018070:CDS 55.0%
TCCAACCGCATATGGGTGTG+GGG - chr1_1:30167208-30167227 None:intergenic 55.0%
CTGAGATGGGGAATTGGGGA+TGG - chr1_1:30166546-30166565 None:intergenic 55.0%
! GGTGAGGAAGAGAGGGTATG+TGG + chr1_1:30166971-30166990 Msa0018070:intron 55.0%
CGGAGTCAACTGTACGCTGA+AGG + chr1_1:30167101-30167120 Msa0018070:intron 55.0%
GTCAACTGTACGCTGAAGGG+AGG + chr1_1:30167105-30167124 Msa0018070:intron 55.0%
TACGCTGAAGGGAGGGAGAA+TGG + chr1_1:30167113-30167132 Msa0018070:intron 55.0%
TCCAACCGCATATGGGTGTG+GGG + chr1_1:30167208-30167227 Msa0018070:intron 55.0%
! CGTCAGCTACCGCAAGTTGA+GGG - chr1_1:30167897-30167916 None:intergenic 55.0%
ACGTCAGCTACCGCAAGTTG+AGG - chr1_1:30167898-30167917 None:intergenic 55.0%
TTGCGGTAGCTGACGTTGCA+TGG + chr1_1:30167902-30167921 Msa0018070:intron 55.0%
GCAAAAATTGCGGTGGGTGG+AGG - chr1_1:30167994-30168013 None:intergenic 55.0%
AGGGCAAAAATTGCGGTGGG+TGG - chr1_1:30167997-30168016 None:intergenic 55.0%
CGGGAAGAAGGACGCGTCTA+CGG + chr1_1:30165774-30165793 Msa0018070:CDS 60.0%
!! TGTGTTGGTATCGGTGCCGG+AGG + chr1_1:30165927-30165946 Msa0018070:CDS 60.0%
ACCAACGCAACCTTCGCCTC+CGG - chr1_1:30165946-30165965 None:intergenic 60.0%
GGTGGAAGAAGGTGGTGTGC+CGG + chr1_1:30165963-30165982 Msa0018070:CDS 60.0%
! AGAAGGTGGTGTGCCGGTGT+TGG + chr1_1:30165969-30165988 Msa0018070:CDS 60.0%
CGATCCATGGTGGCTCGTGA+AGG + chr1_1:30166078-30166097 Msa0018070:CDS 60.0%
TCCCCACACCCATATGCGGT+TGG + chr1_1:30166451-30166470 Msa0018070:intron 60.0%
GGGGAGACCACATGGAGAAG+AGG - chr1_1:30166768-30166787 None:intergenic 60.0%
TCCCCACACCCATATGCGGT+TGG - chr1_1:30166451-30166470 None:intergenic 60.0%
GGGTTGGAGGTTCGGAGCCA+CGG - chr1_1:30165023-30165042 None:intergenic 65.0%
GCAGGCGAGGAAGAGTCGTC+GGG - chr1_1:30165232-30165251 None:intergenic 65.0%
CGCAGGCGAGGAAGAGTCGT+CGG - chr1_1:30165233-30165252 None:intergenic 65.0%
GGAGGCGAAGGTTGCGTTGG+TGG + chr1_1:30165945-30165964 Msa0018070:CDS 65.0%
TAGCGCGGCGGTTCGATCCA+TGG + chr1_1:30166065-30166084 Msa0018070:CDS 65.0%
GGCACCTTCACGAGCCACCA+TGG - chr1_1:30166085-30166104 None:intergenic 65.0%
GGCGAGGAAGAGTCGTCGGG+AGG - chr1_1:30165229-30165248 None:intergenic 70.0%
!! GGTATCGGTGCCGGAGGCGA+AGG + chr1_1:30165933-30165952 Msa0018070:CDS 70.0%
GCCGGAGGCGAAGGTTGCGT+TGG + chr1_1:30165942-30165961 Msa0018070:CDS 70.0%
CGCGGCGGTTCGATCCATGG+TGG + chr1_1:30166068-30166087 Msa0018070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30164929 30168660 30164929 ID=Msa0018070;Name=Msa0018070
chr1_1 mRNA 30164929 30168660 30164929 ID=Msa0018070-mRNA-1;Parent=Msa0018070;Name=Msa0018070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=167|0.33|0.75|0.75|1|1|4|275|360
chr1_1 exon 30164929 30165608 30164929 ID=Msa0018070-mRNA-1:exon:10041;Parent=Msa0018070-mRNA-1
chr1_1 exon 30165694 30166158 30165694 ID=Msa0018070-mRNA-1:exon:10042;Parent=Msa0018070-mRNA-1
chr1_1 exon 30166935 30166985 30166935 ID=Msa0018070-mRNA-1:exon:10043;Parent=Msa0018070-mRNA-1
chr1_1 exon 30168332 30168660 30168332 ID=Msa0018070-mRNA-1:exon:10044;Parent=Msa0018070-mRNA-1
chr1_1 five_prime_UTR 30164929 30165095 30164929 ID=Msa0018070-mRNA-1:five_prime_utr;Parent=Msa0018070-mRNA-1
chr1_1 CDS 30165096 30165608 30165096 ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1
chr1_1 CDS 30165694 30166158 30165694 ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1
chr1_1 CDS 30166935 30166985 30166935 ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1
chr1_1 CDS 30168332 30168385 30168332 ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1
chr1_1 three_prime_UTR 30168386 30168660 30168386 ID=Msa0018070-mRNA-1:three_prime_utr;Parent=Msa0018070-mRNA-1
Gene Sequence

>Msa0018070

ATGGGAACAGAGAGTTACACATACATGGGACGAAGTTTCAAAGAATTCACCATCAACGACGATTCAACTTCCTCCGCTTTCAGTGACTGCAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTACCTCCCGACGACTCTTCCTCGCCTGCGCTTCCGAAAATTCCGATGACCTCATCCGTCAACTTGTCTCCGATCTTCACTCCGACTCAATCGAAGAACAGAAACAAGCTGCCATGGAAATTCGATTGCTCGCAAAGAATAAACCGGAAAATCGAATCAAAATTGCTAAAGCTGGCGCGATTAAACCATTAATTTCGTTAGTTACTTCACAGGACCTGCAACTTCAAGAATACGGTGTTACCGCGATTTTGAATCTCTCTTTGTGTGACGAGAATAAAGAACTAATAGCTTCTTCCGGAGCTATTAAACCGTTAGTTAGAGCGTTAAATTCAGGAACATCAACAGCTAAAGAGAACGCTGCTTGTGCTCTCCTTCGTCTATCTCAGGTGGAAGAGAACAAGGCGGCGATTGGAAGATCAGGTGCAATTCCGTTATTGGTGAATCTTCTAGGAAGTGGAGGAATACGCGGGAAGAAGGACGCGTCTACGGCGCTGTATACTCTGTGTTCTGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCGGGGATAATGAAAGTGTTGGTTGAGTTGATGGCGGATTTTGAATCGAATATGGTGGATAAATCGGCTTATGTTTTGAGTGTGTTGGTATCGGTGCCGGAGGCGAAGGTTGCGTTGGTGGAAGAAGGTGGTGTGCCGGTGTTGGTTGAGATTGTGGAGGTTGGATCGCAGAGACAGAAGGAAATTGCGGCGGTTATTCTGTTACAGATTTGTGAGGATAGCGCGGCGGTTCGATCCATGGTGGCTCGTGAAGGTGCCATTCCTCCTTTGGTTGCTTTGACGCAGTCCGGCACAAATCGCGCCAAACAAAAGGATAATGTTGTTGTTGTGAGGGAATTCGAAAGTGGTGGTGAGGAAGAGAGGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACAACATCAGAATGA

Protein sequence

>Msa0018070

MGTESYTYMGRSFKEFTINDDSTSSAFSDCNSDRSGEFATTSSTSRRLFLACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLVTSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKAAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCSVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVLSVLVSVPEAKVALVEEGGVPVLVEIVEVGSQRQKEIAAVILLQICEDSAAVRSMVAREGAIPPLVALTQSGTNRAKQKDNVVVVREFESGGEEERAEKLIELLRQPRSTTSE*