Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0018070 | sp|O22193|PUB4_ARATH | 48.397 | 312 | 150 | 4 | 25 | 326 | 497 | 807 | 4.23e-79 | 261 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0018070 | Msa0020390 | 0.800640 | 1.310737e-48 | -8.615850e-47 |
Msa0018070 | Msa0021210 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
Msa0018070 | Msa0037880 | 0.802809 | 4.704014e-49 | -8.615850e-47 |
Msa0018070 | Msa0044000 | 0.832873 | 7.370737e-56 | -8.615850e-47 |
Msa0018070 | Msa0052030 | 0.820112 | 8.147694e-53 | -8.615850e-47 |
Msa0018070 | Msa0052400 | 0.916974 | 9.330237e-86 | -8.615850e-47 |
Msa0018070 | Msa0065950 | 0.807924 | 3.985231e-50 | -8.615850e-47 |
Msa0018070 | Msa0089820 | 0.809037 | 2.306606e-50 | -8.615850e-47 |
Msa0018070 | Msa0090570 | 0.828283 | 9.797785e-55 | -8.615850e-47 |
Msa0018070 | Msa0097400 | 0.821186 | 4.615627e-53 | -8.615850e-47 |
Msa0018070 | Msa0115190 | 0.808812 | 2.576818e-50 | -8.615850e-47 |
Msa0018070 | Msa0118540 | 0.855960 | 4.442610e-62 | -8.615850e-47 |
Msa0018070 | Msa0127800 | 0.825509 | 4.509966e-54 | -8.615850e-47 |
Msa0018070 | Msa0130520 | 0.804460 | 2.136966e-49 | -8.615850e-47 |
Msa0018070 | Msa0130720 | 0.816192 | 6.276300e-52 | -8.615850e-47 |
Msa0018070 | Msa0135410 | 0.803984 | 2.685562e-49 | -8.615850e-47 |
Msa0018070 | Msa0150230 | 0.806226 | 9.116010e-50 | -8.615850e-47 |
Msa0018070 | Msa0161820 | 0.803806 | 2.924610e-49 | -8.615850e-47 |
Msa0018070 | Msa0172080 | 0.804454 | 2.143436e-49 | -8.615850e-47 |
Msa0018070 | Msa0183850 | 0.822716 | 2.040862e-53 | -8.615850e-47 |
Msa0018070 | Msa0190330 | 0.829776 | 4.260877e-55 | -8.615850e-47 |
Msa0018070 | Msa0199700 | 0.819467 | 1.143893e-52 | -8.615850e-47 |
Msa0018070 | Msa0217480 | 0.807459 | 5.002740e-50 | -8.615850e-47 |
Msa0018070 | Msa0218370 | 0.817667 | 2.927855e-52 | -8.615850e-47 |
Msa0018070 | Msa0241140 | 0.810938 | 8.986979e-51 | -8.615850e-47 |
Msa0018070 | Msa0244140 | 0.805608 | 1.229864e-49 | -8.615850e-47 |
Msa0018070 | Msa0244190 | 0.815409 | 9.384208e-52 | -8.615850e-47 |
Msa0018070 | Msa0251640 | 0.806124 | 9.577615e-50 | -8.615850e-47 |
Msa0018070 | Msa0253200 | 0.800270 | 1.559110e-48 | -8.615850e-47 |
Msa0018070 | Msa0256330 | 0.808427 | 3.114162e-50 | -8.615850e-47 |
Msa0018070 | Msa0257500 | 0.800243 | 1.579484e-48 | -8.615850e-47 |
Msa0018070 | Msa0261550 | 0.810431 | 1.156441e-50 | -8.615850e-47 |
Msa0018070 | Msa0265150 | 0.801593 | 8.369949e-49 | -8.615850e-47 |
Msa0018070 | Msa0271790 | 0.801900 | 7.238553e-49 | -8.615850e-47 |
Msa0018070 | Msa0292030 | 0.802424 | 5.647609e-49 | -8.615850e-47 |
Msa0018070 | Msa0295330 | 0.807115 | 5.917588e-50 | -8.615850e-47 |
Msa0018070 | Msa0296620 | 0.814157 | 1.777773e-51 | -8.615850e-47 |
Msa0018070 | Msa0296820 | 0.815779 | 7.760477e-52 | -8.615850e-47 |
Msa0018070 | Msa0299660 | 0.815869 | 7.412196e-52 | -8.615850e-47 |
Msa0018070 | Msa0303150 | 0.808315 | 3.289409e-50 | -8.615850e-47 |
Msa0018070 | Msa0311070 | 0.814696 | 1.350750e-51 | -8.615850e-47 |
Msa0018070 | Msa0319170 | 0.817051 | 4.028912e-52 | -8.615850e-47 |
Msa0018070 | Msa0321080 | 0.818930 | 1.515437e-52 | -8.615850e-47 |
Msa0018070 | Msa0329680 | 0.807460 | 5.001629e-50 | -8.615850e-47 |
Msa0018070 | Msa0340710 | 0.803569 | 3.273975e-49 | -8.615850e-47 |
Msa0018070 | Msa0347750 | 0.809832 | 1.556977e-50 | -8.615850e-47 |
Msa0018070 | Msa0358860 | 0.810464 | 1.137665e-50 | -8.615850e-47 |
Msa0018070 | Msa0371950 | 0.807274 | 5.475595e-50 | -8.615850e-47 |
Msa0018070 | Msa0372340 | 0.813370 | 2.648670e-51 | -8.615850e-47 |
Msa0018070 | Msa0389210 | 0.804796 | 1.819242e-49 | -8.615850e-47 |
Msa0018070 | Msa0394120 | 0.803533 | 3.330865e-49 | -8.615850e-47 |
Msa0018070 | Msa0401560 | 0.800986 | 1.114239e-48 | -8.615850e-47 |
Msa0018070 | Msa0403770 | 0.815752 | 7.871641e-52 | -8.615850e-47 |
Msa0018070 | Msa0412840 | 0.805983 | 1.025567e-49 | -8.615850e-47 |
Msa0018070 | Msa0413410 | 0.806262 | 8.960684e-50 | -8.615850e-47 |
Msa0018070 | Msa0455760 | 0.812045 | 5.165289e-51 | -8.615850e-47 |
Msa0018070 | Msa0457510 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
Msa0018070 | Msa0469620 | -0.807157 | 5.797538e-50 | -8.615850e-47 |
Msa0018070 | Msa0510840 | 0.830463 | 2.895272e-55 | -8.615850e-47 |
Msa0018070 | Msa0521740 | 0.802030 | 6.807602e-49 | -8.615850e-47 |
Msa0018070 | Msa0526070 | -0.800166 | 1.637363e-48 | -8.615850e-47 |
Msa0018070 | Msa0545080 | 0.820567 | 6.406773e-53 | -8.615850e-47 |
Msa0018070 | Msa0545700 | 0.817012 | 4.112056e-52 | -8.615850e-47 |
Msa0018070 | Msa0587030 | 0.838926 | 2.151647e-57 | -8.615850e-47 |
Msa0018070 | Msa0602980 | 0.814551 | 1.454671e-51 | -8.615850e-47 |
Msa0018070 | Msa0608160 | 0.803429 | 3.500743e-49 | -8.615850e-47 |
Msa0018070 | Msa0610130 | 0.800481 | 1.412685e-48 | -8.615850e-47 |
Msa0018070 | Msa0610840 | -0.801932 | 7.131539e-49 | -8.615850e-47 |
Msa0018070 | Msa0626850 | 0.829734 | 4.361313e-55 | -8.615850e-47 |
Msa0018070 | Msa0638540 | 0.809950 | 1.468266e-50 | -8.615850e-47 |
Msa0018070 | Msa0648080 | 0.802350 | 5.850147e-49 | -8.615850e-47 |
Msa0018070 | Msa0663920 | 0.800541 | 1.373172e-48 | -8.615850e-47 |
Msa0018070 | Msa0664970 | 0.837825 | 4.136194e-57 | -8.615850e-47 |
Msa0018070 | Msa0667740 | 0.800520 | 1.386939e-48 | -8.615850e-47 |
Msa0018070 | Msa0672550 | 0.814566 | 1.443097e-51 | -8.615850e-47 |
Msa0018070 | Msa0689780 | 0.847660 | 1.004663e-59 | -8.615850e-47 |
Msa0018070 | Msa0711150 | 0.818011 | 2.448195e-52 | -8.615850e-47 |
Msa0018070 | Msa0767370 | 0.801384 | 9.234989e-49 | -8.615850e-47 |
Msa0018070 | Msa0793380 | 0.812396 | 4.330915e-51 | -8.615850e-47 |
Msa0018070 | Msa0816730 | 0.803159 | 3.981075e-49 | -8.615850e-47 |
Msa0018070 | Msa0820850 | 0.806064 | 9.861897e-50 | -8.615850e-47 |
Msa0018070 | Msa0831130 | 0.807200 | 5.676780e-50 | -8.615850e-47 |
Msa0018070 | Msa0842650 | 0.809076 | 2.262663e-50 | -8.615850e-47 |
Msa0018070 | Msa0844110 | 0.812668 | 3.775256e-51 | -8.615850e-47 |
Msa0018070 | Msa0849030 | 0.825027 | 5.863251e-54 | -8.615850e-47 |
Msa0018070 | Msa0853520 | 0.810115 | 1.353503e-50 | -8.615850e-47 |
Msa0018070 | Msa0861130 | 0.818427 | 1.971306e-52 | -8.615850e-47 |
Msa0018070 | Msa0861570 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
Msa0018070 | Msa0880810 | 0.807596 | 4.678368e-50 | -8.615850e-47 |
Msa0018070 | Msa0888260 | 0.818793 | 1.628734e-52 | -8.615850e-47 |
Msa0018070 | Msa0894710 | 0.809833 | 1.556171e-50 | -8.615850e-47 |
Msa0018070 | Msa0921420 | 0.805582 | 1.245419e-49 | -8.615850e-47 |
Msa0018070 | Msa0927380 | 0.833683 | 4.631709e-56 | -8.615850e-47 |
Msa0018070 | Msa0943190 | 0.809126 | 2.207340e-50 | -8.615850e-47 |
Msa0018070 | Msa0944870 | 0.806061 | 9.875003e-50 | -8.615850e-47 |
Msa0018070 | Msa0947760 | 0.808705 | 2.715876e-50 | -8.615850e-47 |
Msa0018070 | Msa0948320 | 0.807041 | 6.136228e-50 | -8.615850e-47 |
Msa0018070 | Msa0951400 | 0.819179 | 1.330761e-52 | -8.615850e-47 |
Msa0018070 | Msa0960390 | 0.832799 | 7.689656e-56 | -8.615850e-47 |
Msa0018070 | Msa0969370 | 0.804462 | 2.135675e-49 | -8.615850e-47 |
Msa0018070 | Msa0974950 | 0.809342 | 1.983926e-50 | -8.615850e-47 |
Msa0018070 | Msa0994370 | 0.839518 | 1.510394e-57 | -8.615850e-47 |
Msa0018070 | Msa1007230 | 0.812737 | 3.647791e-51 | -8.615850e-47 |
Msa0018070 | Msa1018040 | 0.823987 | 1.030111e-53 | -8.615850e-47 |
Msa0018070 | Msa1023180 | 0.802025 | 6.823855e-49 | -8.615850e-47 |
Msa0018070 | Msa1037420 | 0.805996 | 1.019330e-49 | -8.615850e-47 |
Msa0018070 | Msa1039710 | -0.801298 | 9.618448e-49 | -8.615850e-47 |
Msa0018070 | Msa1043050 | 0.803681 | 3.104227e-49 | -8.615850e-47 |
Msa0018070 | Msa1063420 | 0.820390 | 7.035710e-53 | -8.615850e-47 |
Msa0018070 | Msa1068870 | 0.821429 | 4.056570e-53 | -8.615850e-47 |
Msa0018070 | Msa1071320 | 0.805265 | 1.450887e-49 | -8.615850e-47 |
Msa0018070 | Msa1072900 | 0.809855 | 1.539589e-50 | -8.615850e-47 |
Msa0018070 | Msa1076960 | 0.809458 | 1.874013e-50 | -8.615850e-47 |
Msa0018070 | Msa1081790 | -0.819166 | 1.339575e-52 | -8.615850e-47 |
Msa0018070 | Msa1093100 | 0.828803 | 7.336506e-55 | -8.615850e-47 |
Msa0018070 | Msa1100930 | 0.821179 | 4.633398e-53 | -8.615850e-47 |
Msa0018070 | Msa1111870 | 0.800187 | 1.621217e-48 | -8.615850e-47 |
Msa0018070 | Msa1122860 | 0.810450 | 1.145564e-50 | -8.615850e-47 |
Msa0018070 | Msa1133230 | 0.830541 | 2.770679e-55 | -8.615850e-47 |
Msa0018070 | Msa1133250 | 0.822684 | 2.076986e-53 | -8.615850e-47 |
Msa0018070 | Msa1137570 | 0.801389 | 9.214047e-49 | -8.615850e-47 |
Msa0018070 | Msa1137830 | 0.804826 | 1.792456e-49 | -8.615850e-47 |
Msa0018070 | Msa1150710 | 0.801964 | 7.021903e-49 | -8.615850e-47 |
Msa0018070 | Msa1166090 | -0.813605 | 2.351531e-51 | -8.615850e-47 |
Msa0018070 | Msa1174040 | 0.813982 | 1.942667e-51 | -8.615850e-47 |
Msa0018070 | Msa1177560 | 0.808380 | 3.186372e-50 | -8.615850e-47 |
Msa0018070 | Msa1180500 | 0.830083 | 3.585917e-55 | -8.615850e-47 |
Msa0018070 | Msa1181250 | 0.804869 | 1.755996e-49 | -8.615850e-47 |
Msa0018070 | Msa1181330 | 0.806945 | 6.429983e-50 | -8.615850e-47 |
Msa0018070 | Msa1206270 | 0.800722 | 1.261068e-48 | -8.615850e-47 |
Msa0018070 | Msa1209530 | 0.818660 | 1.745398e-52 | -8.615850e-47 |
Msa0018070 | Msa1210110 | 0.814085 | 1.844065e-51 | -8.615850e-47 |
Msa0018070 | Msa1217650 | -0.810381 | 1.185658e-50 | -8.615850e-47 |
Msa0018070 | Msa1218580 | 0.808120 | 3.619821e-50 | -8.615850e-47 |
Msa0018070 | Msa1231840 | 0.820005 | 8.620612e-53 | -8.615850e-47 |
Msa0018070 | Msa1270660 | 0.845222 | 4.647042e-59 | -8.615850e-47 |
Msa0018070 | Msa1270730 | 0.833462 | 5.259665e-56 | -8.615850e-47 |
Msa0018070 | Msa1274560 | 0.819066 | 1.411263e-52 | -8.615850e-47 |
Msa0018070 | Msa1276340 | 0.808142 | 3.581660e-50 | -8.615850e-47 |
Msa0018070 | Msa1291830 | 0.800380 | 1.480885e-48 | -8.615850e-47 |
Msa0018070 | Msa1295330 | 0.829153 | 6.035039e-55 | -8.615850e-47 |
Msa0018070 | Msa1305200 | 0.811041 | 8.535782e-51 | -8.615850e-47 |
Msa0018070 | Msa1305350 | 0.810593 | 1.067245e-50 | -8.615850e-47 |
Msa0018070 | Msa1305810 | 0.808947 | 2.411325e-50 | -8.615850e-47 |
Msa0018070 | Msa1306750 | 0.805317 | 1.415197e-49 | -8.615850e-47 |
Msa0018070 | Msa1312520 | 0.835898 | 1.283474e-56 | -8.615850e-47 |
Msa0018070 | Msa1313320 | 0.804243 | 2.372400e-49 | -8.615850e-47 |
Msa0018070 | Msa1335230 | 0.822731 | 2.024712e-53 | -8.615850e-47 |
Msa0018070 | Msa1338400 | 0.806029 | 1.003291e-49 | -8.615850e-47 |
Msa0018070 | Msa1355890 | 0.856797 | 2.523016e-62 | -8.615850e-47 |
Msa0018070 | Msa1378040 | 0.809643 | 1.709408e-50 | -8.615850e-47 |
Msa0018070 | Msa1394310 | 0.825242 | 5.215770e-54 | -8.615850e-47 |
Msa0018070 | Msa1396400 | -0.809894 | 1.510093e-50 | -8.615850e-47 |
Msa0018070 | Msa1400930 | 0.803840 | 2.877432e-49 | -8.615850e-47 |
Msa0018070 | Msa1403340 | 0.818031 | 2.423078e-52 | -8.615850e-47 |
Msa0018070 | Msa1407600 | 0.807967 | 3.902189e-50 | -8.615850e-47 |
Msa0018070 | Msa1419000 | 0.911708 | 4.476160e-83 | -8.615850e-47 |
Msa0018070 | Msa1420270 | 0.848084 | 7.680006e-60 | -8.615850e-47 |
Msa0018070 | Msa1422810 | 0.813477 | 2.509274e-51 | -8.615850e-47 |
Msa0018070 | Msa1423820 | 0.804109 | 2.529461e-49 | -8.615850e-47 |
Msa0018070 | Msa1430130 | 0.815174 | 1.058007e-51 | -8.615850e-47 |
Msa0018070 | Msa1436600 | 0.807287 | 5.441373e-50 | -8.615850e-47 |
Msa0018070 | Msa1454570 | 0.802202 | 6.273449e-49 | -8.615850e-47 |
Msa0018070 | Msa1457160 | 0.812056 | 5.137614e-51 | -8.615850e-47 |
Msa0018070 | Msa1460320 | -0.819720 | 1.001403e-52 | -8.615850e-47 |
Msa0018070 | Msa1460750 | 0.814230 | 1.712414e-51 | -8.615850e-47 |
Msa0018070 | Msa1460800 | 0.810546 | 1.092292e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0018070 | MtrunA17_Chr1g0152561 | 94.398 | 357 | 3 | 1 | 1 | 357 | 1 | 340 | 0.0 | 667 |
Msa0018070 | MtrunA17_Chr3g0134761 | 71.714 | 350 | 75 | 5 | 16 | 359 | 5 | 336 | 1.36e-172 | 483 |
Msa0018070 | MtrunA17_Chr1g0183781 | 53.008 | 266 | 124 | 1 | 61 | 326 | 440 | 704 | 1.59e-80 | 260 |
Msa0018070 | MtrunA17_Chr2g0290151 | 49.164 | 299 | 135 | 1 | 61 | 359 | 175 | 456 | 3.11e-80 | 252 |
Msa0018070 | MtrunA17_Chr3g0106931 | 54.887 | 266 | 119 | 1 | 61 | 326 | 553 | 817 | 1.61e-78 | 257 |
Msa0018070 | MtrunA17_Chr7g0261371 | 51.128 | 266 | 129 | 1 | 61 | 326 | 514 | 778 | 1.93e-74 | 245 |
Msa0018070 | MtrunA17_Chr4g0044411 | 48.120 | 266 | 138 | 0 | 61 | 326 | 373 | 638 | 1.78e-69 | 229 |
Msa0018070 | MtrunA17_Chr4g0031431 | 41.368 | 307 | 178 | 1 | 27 | 333 | 321 | 625 | 1.85e-64 | 216 |
Msa0018070 | MtrunA17_Chr7g0248251 | 40.647 | 278 | 164 | 1 | 54 | 331 | 361 | 637 | 1.11e-59 | 203 |
Msa0018070 | MtrunA17_Chr7g0237931 | 42.066 | 271 | 151 | 2 | 56 | 326 | 333 | 597 | 1.34e-58 | 199 |
Msa0018070 | MtrunA17_Chr1g0199321 | 44.361 | 266 | 148 | 0 | 61 | 326 | 345 | 610 | 2.80e-58 | 199 |
Msa0018070 | MtrunA17_Chr5g0437411 | 41.544 | 272 | 146 | 5 | 64 | 326 | 408 | 675 | 3.14e-48 | 172 |
Msa0018070 | MtrunA17_Chr7g0275081 | 38.043 | 276 | 159 | 6 | 68 | 333 | 176 | 449 | 3.33e-37 | 139 |
Msa0018070 | MtrunA17_Chr5g0429231 | 34.007 | 297 | 174 | 5 | 61 | 352 | 34 | 313 | 2.96e-34 | 129 |
Msa0018070 | MtrunA17_Chr7g0234671 | 34.559 | 272 | 167 | 7 | 70 | 333 | 180 | 448 | 3.19e-34 | 131 |
Msa0018070 | MtrunA17_Chr2g0284461 | 37.546 | 269 | 160 | 6 | 64 | 326 | 399 | 665 | 3.22e-33 | 130 |
Msa0018070 | MtrunA17_Chr5g0435041 | 33.574 | 277 | 177 | 5 | 55 | 326 | 14 | 288 | 2.46e-27 | 110 |
Msa0018070 | MtrunA17_Chr3g0118001 | 28.571 | 266 | 185 | 2 | 64 | 326 | 214 | 477 | 6.34e-26 | 108 |
Msa0018070 | MtrunA17_Chr8g0377151 | 29.326 | 341 | 202 | 10 | 30 | 359 | 404 | 716 | 4.78e-24 | 103 |
Msa0018070 | MtrunA17_Chr3g0137061 | 30.216 | 278 | 180 | 6 | 61 | 326 | 110 | 385 | 1.64e-22 | 98.6 |
Msa0018070 | MtrunA17_Chr1g0189811 | 34.307 | 274 | 169 | 6 | 63 | 326 | 156 | 428 | 2.72e-22 | 97.4 |
Msa0018070 | MtrunA17_Chr4g0059201 | 28.443 | 334 | 220 | 10 | 7 | 331 | 376 | 699 | 2.78e-22 | 98.6 |
Msa0018070 | MtrunA17_Chr3g0122721 | 31.095 | 283 | 166 | 9 | 82 | 355 | 448 | 710 | 1.36e-19 | 90.5 |
Msa0018070 | MtrunA17_Chr3g0111451 | 32.237 | 304 | 179 | 7 | 61 | 356 | 41 | 325 | 2.70e-19 | 88.2 |
Msa0018070 | MtrunA17_Chr1g0149941 | 28.618 | 304 | 183 | 10 | 63 | 352 | 175 | 458 | 3.73e-19 | 89.0 |
Msa0018070 | MtrunA17_Chr8g0350681 | 29.130 | 230 | 151 | 6 | 101 | 325 | 238 | 460 | 2.07e-18 | 86.7 |
Msa0018070 | MtrunA17_Chr6g0451581 | 25.188 | 266 | 194 | 2 | 64 | 326 | 241 | 504 | 5.00e-18 | 85.5 |
Msa0018070 | MtrunA17_Chr3g0117851 | 30.515 | 272 | 144 | 9 | 74 | 336 | 390 | 625 | 5.23e-18 | 85.5 |
Msa0018070 | MtrunA17_Chr4g0048811 | 31.925 | 213 | 134 | 7 | 135 | 343 | 121 | 326 | 2.03e-17 | 82.0 |
Msa0018070 | MtrunA17_Chr6g0449461 | 29.478 | 268 | 141 | 6 | 64 | 324 | 44 | 270 | 1.98e-16 | 79.3 |
Msa0018070 | MtrunA17_Chr4g0013091 | 31.271 | 291 | 170 | 10 | 72 | 342 | 429 | 709 | 1.80e-15 | 77.8 |
Msa0018070 | MtrunA17_Chr2g0280671 | 28.315 | 279 | 188 | 6 | 60 | 332 | 104 | 376 | 3.93e-15 | 75.9 |
Msa0018070 | MtrunA17_Chr1g0205751 | 25.735 | 272 | 194 | 3 | 61 | 332 | 282 | 545 | 1.38e-14 | 75.1 |
Msa0018070 | MtrunA17_Chr7g0259851 | 28.079 | 203 | 138 | 2 | 61 | 263 | 269 | 463 | 2.26e-14 | 74.3 |
Msa0018070 | MtrunA17_Chr1g0199031 | 37.607 | 117 | 56 | 1 | 138 | 254 | 18 | 117 | 9.52e-14 | 67.8 |
Msa0018070 | MtrunA17_Chr7g0246731 | 23.529 | 306 | 191 | 6 | 61 | 325 | 156 | 459 | 2.68e-13 | 70.9 |
Msa0018070 | MtrunA17_Chr5g0394261 | 26.255 | 259 | 183 | 3 | 74 | 332 | 292 | 542 | 3.23e-13 | 70.9 |
Msa0018070 | MtrunA17_Chr7g0215741 | 33.793 | 145 | 93 | 1 | 99 | 240 | 597 | 741 | 1.12e-11 | 66.2 |
Msa0018070 | MtrunA17_Chr5g0413681 | 25.461 | 271 | 194 | 4 | 64 | 326 | 386 | 656 | 3.37e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0018070 | AT3G01400.1 | 76.685 | 356 | 63 | 3 | 5 | 359 | 10 | 346 | 0.0 | 537 |
Msa0018070 | AT5G58680.1 | 69.774 | 354 | 86 | 4 | 5 | 355 | 6 | 341 | 2.46e-173 | 486 |
Msa0018070 | AT2G23140.3 | 50.000 | 286 | 136 | 2 | 47 | 326 | 334 | 618 | 7.18e-82 | 262 |
Msa0018070 | AT2G23140.5 | 50.000 | 286 | 136 | 2 | 47 | 326 | 334 | 618 | 7.18e-82 | 262 |
Msa0018070 | AT2G23140.2 | 48.397 | 312 | 150 | 4 | 25 | 326 | 497 | 807 | 4.30e-80 | 261 |
Msa0018070 | AT2G23140.4 | 48.397 | 312 | 150 | 4 | 25 | 326 | 497 | 807 | 4.30e-80 | 261 |
Msa0018070 | AT2G23140.1 | 48.397 | 312 | 150 | 4 | 25 | 326 | 500 | 810 | 4.70e-80 | 261 |
Msa0018070 | AT4G16490.1 | 48.837 | 301 | 135 | 2 | 61 | 359 | 185 | 468 | 1.93e-78 | 248 |
Msa0018070 | AT5G67340.1 | 51.311 | 267 | 128 | 2 | 61 | 326 | 423 | 688 | 1.10e-75 | 247 |
Msa0018070 | AT5G67340.2 | 51.311 | 267 | 128 | 2 | 61 | 326 | 423 | 688 | 1.10e-75 | 247 |
Msa0018070 | AT3G54790.2 | 51.698 | 265 | 126 | 2 | 63 | 326 | 440 | 703 | 1.69e-74 | 244 |
Msa0018070 | AT3G54790.3 | 51.698 | 265 | 126 | 2 | 63 | 326 | 476 | 739 | 4.16e-74 | 244 |
Msa0018070 | AT3G54790.1 | 51.698 | 265 | 126 | 2 | 63 | 326 | 476 | 739 | 4.16e-74 | 244 |
Msa0018070 | AT1G23030.1 | 46.014 | 276 | 146 | 2 | 54 | 326 | 324 | 599 | 1.58e-67 | 224 |
Msa0018070 | AT1G71020.2 | 46.520 | 273 | 144 | 2 | 61 | 331 | 195 | 467 | 3.80e-65 | 214 |
Msa0018070 | AT1G71020.1 | 46.520 | 273 | 144 | 2 | 61 | 331 | 343 | 615 | 4.57e-64 | 215 |
Msa0018070 | AT3G46510.1 | 43.985 | 266 | 149 | 0 | 61 | 326 | 354 | 619 | 1.15e-63 | 214 |
Msa0018070 | AT2G28830.1 | 44.403 | 268 | 147 | 2 | 61 | 326 | 285 | 552 | 5.27e-63 | 211 |
Msa0018070 | AT3G54850.1 | 46.269 | 268 | 142 | 2 | 60 | 326 | 346 | 612 | 6.84e-57 | 196 |
Msa0018070 | AT5G42340.1 | 41.026 | 273 | 161 | 0 | 59 | 331 | 379 | 651 | 9.27e-52 | 182 |
Msa0018070 | AT3G07360.5 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.3 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.9 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.6 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.2 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.8 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.10 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.7 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.4 | 34.155 | 284 | 175 | 7 | 59 | 333 | 34 | 314 | 8.47e-35 | 130 |
Msa0018070 | AT3G07360.1 | 34.155 | 284 | 175 | 7 | 59 | 333 | 169 | 449 | 7.85e-34 | 130 |
Msa0018070 | AT4G12710.1 | 34.155 | 284 | 177 | 7 | 68 | 342 | 55 | 337 | 8.34e-29 | 115 |
Msa0018070 | AT1G29340.1 | 39.179 | 268 | 157 | 6 | 64 | 326 | 411 | 677 | 2.67e-28 | 116 |
Msa0018070 | AT5G62560.1 | 30.112 | 269 | 181 | 4 | 63 | 326 | 238 | 504 | 2.75e-25 | 107 |
Msa0018070 | AT5G40140.1 | 30.597 | 268 | 178 | 4 | 64 | 326 | 233 | 497 | 5.44e-24 | 103 |
Msa0018070 | AT1G67530.2 | 32.576 | 264 | 168 | 6 | 71 | 326 | 436 | 697 | 1.10e-23 | 103 |
Msa0018070 | AT1G67530.1 | 32.576 | 264 | 168 | 6 | 71 | 326 | 436 | 697 | 1.10e-23 | 103 |
Msa0018070 | AT1G67530.4 | 32.576 | 264 | 168 | 6 | 71 | 326 | 436 | 697 | 1.10e-23 | 103 |
Msa0018070 | AT5G14510.1 | 33.457 | 269 | 168 | 7 | 64 | 325 | 5 | 269 | 1.08e-22 | 97.4 |
Msa0018070 | AT3G03440.1 | 30.061 | 326 | 162 | 7 | 38 | 360 | 91 | 353 | 4.77e-22 | 97.1 |
Msa0018070 | AT1G27910.1 | 30.094 | 319 | 190 | 8 | 51 | 355 | 407 | 706 | 6.16e-22 | 97.8 |
Msa0018070 | AT5G18320.1 | 29.073 | 313 | 194 | 10 | 57 | 344 | 149 | 458 | 8.43e-21 | 93.6 |
Msa0018070 | AT1G24330.1 | 30.000 | 280 | 180 | 7 | 83 | 348 | 448 | 725 | 9.53e-20 | 91.3 |
Msa0018070 | AT1G24330.2 | 30.000 | 280 | 180 | 7 | 83 | 348 | 448 | 725 | 9.53e-20 | 91.3 |
Msa0018070 | AT4G31890.3 | 31.538 | 260 | 163 | 8 | 79 | 326 | 163 | 419 | 1.24e-19 | 90.5 |
Msa0018070 | AT4G31890.2 | 31.538 | 260 | 163 | 8 | 79 | 326 | 163 | 419 | 1.24e-19 | 90.5 |
Msa0018070 | AT4G31890.1 | 31.538 | 260 | 163 | 8 | 79 | 326 | 163 | 419 | 1.24e-19 | 90.5 |
Msa0018070 | AT5G65200.1 | 27.609 | 297 | 193 | 6 | 64 | 353 | 229 | 510 | 1.37e-19 | 90.5 |
Msa0018070 | AT4G21350.1 | 33.977 | 259 | 163 | 5 | 55 | 309 | 88 | 342 | 3.67e-19 | 88.2 |
Msa0018070 | AT1G10560.1 | 32.258 | 217 | 140 | 5 | 64 | 274 | 393 | 608 | 2.11e-18 | 87.0 |
Msa0018070 | AT3G47820.1 | 28.814 | 295 | 189 | 8 | 71 | 349 | 218 | 507 | 1.06e-17 | 84.7 |
Msa0018070 | AT2G25130.1 | 29.183 | 257 | 168 | 7 | 82 | 326 | 132 | 386 | 1.31e-16 | 81.3 |
Msa0018070 | AT5G01830.1 | 30.303 | 264 | 167 | 8 | 72 | 326 | 380 | 635 | 3.53e-16 | 80.5 |
Msa0018070 | AT1G60190.1 | 28.270 | 237 | 157 | 8 | 74 | 298 | 389 | 624 | 1.64e-15 | 78.2 |
Msa0018070 | AT5G13060.1 | 25.941 | 239 | 155 | 3 | 61 | 292 | 311 | 534 | 6.32e-14 | 73.6 |
Msa0018070 | AT5G50900.1 | 28.679 | 265 | 180 | 5 | 62 | 320 | 147 | 408 | 2.59e-13 | 71.6 |
Msa0018070 | AT3G19380.1 | 27.863 | 262 | 171 | 7 | 72 | 318 | 121 | 379 | 2.69e-12 | 68.2 |
Msa0018070 | AT1G01830.1 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 4.06e-12 | 67.8 |
Msa0018070 | AT1G01830.3 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 4.06e-12 | 67.8 |
Msa0018070 | AT1G01830.2 | 27.755 | 245 | 171 | 5 | 48 | 287 | 155 | 398 | 4.06e-12 | 67.8 |
Msa0018070 | AT2G44900.1 | 33.103 | 145 | 94 | 1 | 99 | 240 | 608 | 752 | 1.11e-11 | 66.6 |
Msa0018070 | AT2G44900.2 | 33.103 | 145 | 94 | 1 | 99 | 240 | 608 | 752 | 1.11e-11 | 66.6 |
Msa0018070 | AT1G77460.2 | 28.870 | 239 | 150 | 7 | 97 | 325 | 467 | 695 | 1.75e-11 | 66.2 |
Msa0018070 | AT1G77460.3 | 28.870 | 239 | 150 | 7 | 97 | 325 | 467 | 695 | 1.75e-11 | 66.2 |
Msa0018070 | AT1G77460.4 | 28.870 | 239 | 150 | 7 | 97 | 325 | 467 | 695 | 1.75e-11 | 66.2 |
Msa0018070 | AT1G77460.1 | 28.870 | 239 | 150 | 7 | 97 | 325 | 467 | 695 | 1.75e-11 | 66.2 |
Msa0018070 | AT3G60350.1 | 34.932 | 146 | 90 | 2 | 99 | 240 | 599 | 743 | 6.20e-11 | 64.3 |
Msa0018070 | AT3G60350.2 | 34.932 | 146 | 90 | 2 | 99 | 240 | 599 | 743 | 6.20e-11 | 64.3 |
Msa0018070 | AT5G18330.1 | 27.778 | 270 | 169 | 8 | 57 | 306 | 142 | 405 | 9.29e-11 | 63.5 |
Msa0018070 | AT1G61350.1 | 23.183 | 289 | 169 | 9 | 58 | 337 | 143 | 387 | 9.53e-11 | 63.5 |
Find 129 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTTATTGGTGAATCTTCT+AGG | 0.217498 | 1_1:+30165736 | Msa0018070:CDS |
GAAGTAACTAACGAAATTAA+TGG | 0.228085 | 1_1:-30165408 | None:intergenic |
ATCAGGTGCAATTCCGTTAT+TGG | 0.234218 | 1_1:+30165723 | Msa0018070:CDS |
GCCTAACGCAAACACCGATA+TGG | 0.286572 | 1_1:+30165077 | Msa0018070:exon |
GTACGAAAGGAGAATTTATA+TGG | 0.293964 | 1_1:-30164980 | None:intergenic |
GGATGCTATGGTTGTGGTTC+GGG | 0.316819 | 1_1:-30165040 | None:intergenic |
TGAAGGTGCCATTCCTCCTT+TGG | 0.322339 | 1_1:+30166095 | Msa0018070:CDS |
TTTGCGTTAGGCTTGGAATT+AGG | 0.325073 | 1_1:-30165066 | None:intergenic |
TGTGGTTCGGGTTGGAGGTT+CGG | 0.331102 | 1_1:-30165028 | None:intergenic |
TTAGTTAGAGCGTTAAATTC+AGG | 0.337381 | 1_1:+30165534 | Msa0018070:CDS |
CGGATGCTATGGTTGTGGTT+CGG | 0.345665 | 1_1:-30165041 | None:intergenic |
GTTTGTAAATATCTTCTTAA+CGG | 0.347824 | 1_1:+30168517 | Msa0018070:three_prime_UTR |
CATTCTGATGTTGTAGATCT+TGG | 0.352419 | 1_1:-30168362 | None:intergenic |
AGAAAAGAATAAAATGTTAC+TGG | 0.354379 | 1_1:+30168636 | Msa0018070:three_prime_UTR |
TACATGTGTAACCAAGTCTT+GGG | 0.375610 | 1_1:-30164936 | None:intergenic |
TTGGTTGAGATTGTGGAGGT+TGG | 0.376021 | 1_1:+30165988 | Msa0018070:CDS |
CACCGTATTCTTGAAGTTGC+AGG | 0.379035 | 1_1:-30165437 | None:intergenic |
GAAAGTGTTGGTTGAGTTGA+TGG | 0.395341 | 1_1:+30165858 | Msa0018070:CDS |
ATCGAATATGGTGGATAAAT+CGG | 0.413047 | 1_1:+30165891 | Msa0018070:CDS |
ATCGGTGTTTGCGTTAGGCT+TGG | 0.429321 | 1_1:-30165073 | None:intergenic |
GGAAGTTGAATCGTCGTTGA+TGG | 0.431808 | 1_1:-30165145 | None:intergenic |
TGCTCTCCTTCGTCTATCTC+AGG | 0.438091 | 1_1:+30165587 | Msa0018070:CDS |
GAGAAGCTTTGTAAAGTTTG+TGG | 0.438474 | 1_1:+30168539 | Msa0018070:three_prime_UTR |
CGAATCAAAATTGCTAAAGC+TGG | 0.447290 | 1_1:+30165375 | Msa0018070:CDS |
TGGAGGAATACGCGGGAAGA+AGG | 0.449541 | 1_1:+30165762 | Msa0018070:CDS |
AAAGAACTAATAGCTTCTTC+CGG | 0.451795 | 1_1:+30165498 | Msa0018070:CDS |
CACAAATCGCGCCAAACAAA+AGG | 0.454708 | 1_1:+30166137 | Msa0018070:CDS |
AATCTCACACGTGCTTGTTA+AGG | 0.458845 | 1_1:+30168426 | Msa0018070:three_prime_UTR |
AACTAACGGTTTAATAGCTC+CGG | 0.461417 | 1_1:-30165517 | None:intergenic |
GCTATGGTTGTGGTTCGGGT+TGG | 0.462253 | 1_1:-30165036 | None:intergenic |
ATGGTTGTGGTTCGGGTTGG+AGG | 0.462367 | 1_1:-30165033 | None:intergenic |
TTGGTTGCTTTGACGCAGTC+CGG | 0.462970 | 1_1:+30166114 | Msa0018070:CDS |
CCTAACGCAAACACCGATAT+GGG | 0.463513 | 1_1:+30165078 | Msa0018070:exon |
CGCAGGCGAGGAAGAGTCGT+CGG | 0.463723 | 1_1:-30165230 | None:intergenic |
GGAGGCGAAGGTTGCGTTGG+TGG | 0.465398 | 1_1:+30165945 | Msa0018070:CDS |
TTGTTTGGCGCGATTTGTGC+CGG | 0.465975 | 1_1:-30166133 | None:intergenic |
TGGTCAAGAACACAATGAAT+TGG | 0.466189 | 1_1:+30168460 | Msa0018070:three_prime_UTR |
GTTAGGCTTGGAATTAGGTT+CGG | 0.466622 | 1_1:-30165061 | None:intergenic |
GGAGAATTTATATGGGAGAG+AGG | 0.472276 | 1_1:-30164972 | None:intergenic |
GAGTGTGTTGGTATCGGTGC+CGG | 0.474240 | 1_1:+30165924 | Msa0018070:CDS |
TTGGTGAATCTTCTAGGAAG+TGG | 0.474246 | 1_1:+30165742 | Msa0018070:CDS |
CCTAGAAGATTCACCAATAA+CGG | 0.474649 | 1_1:-30165736 | None:intergenic |
GAGAATTTATATGGGAGAGA+GGG | 0.475558 | 1_1:-30164971 | None:intergenic |
AAGATGAGAGCGGTGAAAGC+GGG | 0.475585 | 1_1:+30165829 | Msa0018070:CDS |
GAAGAGAACAAGGCGGCGAT+TGG | 0.476176 | 1_1:+30165697 | Msa0018070:CDS |
GGAATTAGGTTCGGATGCTA+TGG | 0.477196 | 1_1:-30165052 | None:intergenic |
AAAGTGGTGGTGAGGAAGAG+AGG | 0.478358 | 1_1:+30166963 | Msa0018070:CDS |
AAGGCGGCGATTGGAAGATC+AGG | 0.482551 | 1_1:+30165706 | Msa0018070:CDS |
ACCAACGCAACCTTCGCCTC+CGG | 0.483680 | 1_1:-30165943 | None:intergenic |
TTACATGTGTAACCAAGTCT+TGG | 0.485092 | 1_1:-30164937 | None:intergenic |
GGGTTGGAGGTTCGGAGCCA+CGG | 0.489715 | 1_1:-30165020 | None:intergenic |
GCACCATAAAATAATTGCTA+GGG | 0.490566 | 1_1:-30168395 | None:intergenic |
GGTATCGGTGCCGGAGGCGA+AGG | 0.495124 | 1_1:+30165933 | Msa0018070:CDS |
CCCATATCGGTGTTTGCGTT+AGG | 0.498952 | 1_1:-30165078 | None:intergenic |
GTAACTCTCTGTTCCCATAT+CGG | 0.503292 | 1_1:-30165091 | None:intergenic |
AGGTTCGGATGCTATGGTTG+TGG | 0.504070 | 1_1:-30165046 | None:intergenic |
AATTTCGTTAGTTACTTCAC+AGG | 0.505937 | 1_1:+30165413 | Msa0018070:CDS |
GCAGGCGAGGAAGAGTCGTC+GGG | 0.507232 | 1_1:-30165229 | None:intergenic |
GCCGGTGTTGGTTGAGATTG+TGG | 0.507527 | 1_1:+30165981 | Msa0018070:CDS |
TTTCTGTTCTTCGATTGAGT+CGG | 0.509184 | 1_1:-30165304 | None:intergenic |
TAGCGCGGCGGTTCGATCCA+TGG | 0.519060 | 1_1:+30166065 | Msa0018070:CDS |
CGGAGACAAGTTGACGGATG+AGG | 0.526478 | 1_1:-30165272 | None:intergenic |
CGGGAAGAAGGACGCGTCTA+CGG | 0.528830 | 1_1:+30165774 | Msa0018070:CDS |
GACTGCAACAGTGACAGATC+CGG | 0.529495 | 1_1:+30165180 | Msa0018070:CDS |
CAAAGCAACCAAAGGAGGAA+TGG | 0.530629 | 1_1:-30166103 | None:intergenic |
AGCACCATAAAATAATTGCT+AGG | 0.531539 | 1_1:-30168396 | None:intergenic |
AACAGAGAGTTACACATACA+TGG | 0.531557 | 1_1:+30165101 | Msa0018070:CDS |
AGAAGTGGTGGCGAATTCGC+CGG | 0.533976 | 1_1:-30165199 | None:intergenic |
CGATCCATGGTGGCTCGTGA+AGG | 0.535543 | 1_1:+30166078 | Msa0018070:CDS |
ATTGCTCGCAAAGAATAAAC+CGG | 0.537284 | 1_1:+30165347 | Msa0018070:CDS |
AAGGTTGCGTTGGTGGAAGA+AGG | 0.538669 | 1_1:+30165952 | Msa0018070:CDS |
GATTGAGTCGGAGTGAAGAT+CGG | 0.540044 | 1_1:-30165292 | None:intergenic |
GCCGGAGGCGAAGGTTGCGT+TGG | 0.541900 | 1_1:+30165942 | Msa0018070:CDS |
AGTTTGTGGTGTAAATCATA+CGG | 0.546547 | 1_1:+30168553 | Msa0018070:three_prime_UTR |
TGCGAGCAATCGAATTTCCA+TGG | 0.550132 | 1_1:-30165334 | None:intergenic |
TACGAAAGGAGAATTTATAT+GGG | 0.554574 | 1_1:-30164979 | None:intergenic |
GAAGATCGGAGACAAGTTGA+CGG | 0.556676 | 1_1:-30165278 | None:intergenic |
GACCTGCAACTTCAAGAATA+CGG | 0.556927 | 1_1:+30165435 | Msa0018070:CDS |
TCATCCTACACCCCAAGACT+TGG | 0.561204 | 1_1:+30164925 | None:intergenic |
AGAAGGTGGTGTGCCGGTGT+TGG | 0.561302 | 1_1:+30165969 | Msa0018070:CDS |
AGAACAGAAACAAGCTGCCA+TGG | 0.562865 | 1_1:+30165317 | Msa0018070:CDS |
GAATTTAACGCTCTAACTAA+CGG | 0.564280 | 1_1:-30165531 | None:intergenic |
GGTGGAAGAAGGTGGTGTGC+CGG | 0.565802 | 1_1:+30165963 | Msa0018070:CDS |
TCGTCGGGAGGTAGAAGAAG+TGG | 0.568427 | 1_1:-30165214 | None:intergenic |
AGAAACTAATTGAGCTTCTG+AGG | 0.580867 | 1_1:+30168336 | Msa0018070:CDS |
AAGTGGTGGTGAGGAAGAGA+GGG | 0.582060 | 1_1:+30166964 | Msa0018070:CDS |
TCCACAATCTCAACCAACAC+CGG | 0.586132 | 1_1:-30165982 | None:intergenic |
GGAATTCGAAAGTGGTGGTG+AGG | 0.588248 | 1_1:+30166955 | Msa0018070:CDS |
GTATACTCTGTGTTCTGTGA+AGG | 0.596489 | 1_1:+30165801 | Msa0018070:CDS |
GTAACCAAGTCTTGGGGTGT+AGG | 0.598630 | 1_1:-30164929 | None:intergenic |
GTTGTGAGGGAATTCGAAAG+TGG | 0.601499 | 1_1:+30166947 | Msa0018070:CDS |
CTAGGAAGTGGAGGAATACG+CGG | 0.602566 | 1_1:+30165754 | Msa0018070:CDS |
GGATAATGTTGTTGTTGTGA+GGG | 0.603402 | 1_1:+30166934 | Msa0018070:intron |
TAAGATGAGAGCGGTGAAAG+CGG | 0.603828 | 1_1:+30165828 | Msa0018070:CDS |
GGTTGGATCGCAGAGACAGA+AGG | 0.604932 | 1_1:+30166005 | Msa0018070:CDS |
GGCACCTTCACGAGCCACCA+TGG | 0.605176 | 1_1:-30166082 | None:intergenic |
AGGATAATGTTGTTGTTGTG+AGG | 0.605414 | 1_1:+30166933 | Msa0018070:intron |
TATTCTGTTACAGATTTGTG+AGG | 0.606208 | 1_1:+30166041 | Msa0018070:CDS |
GTTGCGTTGGTGGAAGAAGG+TGG | 0.609924 | 1_1:+30165955 | Msa0018070:CDS |
ATTACAGGTGGAAGAGAACA+AGG | 0.611067 | 1_1:+30165687 | Msa0018070:intron |
AGTGTTGGTTGAGTTGATGG+CGG | 0.612937 | 1_1:+30165861 | Msa0018070:CDS |
TGCGTCAAAGCAACCAAAGG+AGG | 0.612998 | 1_1:-30166108 | None:intergenic |
ACTGTTGCAGTCACTGAAAG+CGG | 0.614710 | 1_1:-30165169 | None:intergenic |
GGCGAGGAAGAGTCGTCGGG+AGG | 0.616350 | 1_1:-30165226 | None:intergenic |
GTGAATCTTCTAGGAAGTGG+AGG | 0.623068 | 1_1:+30165745 | Msa0018070:CDS |
AGATGAGAGCGGTGAAAGCG+GGG | 0.626464 | 1_1:+30165830 | Msa0018070:CDS |
TAGACGAAGAAGTGTACGAA+AGG | 0.629451 | 1_1:-30164993 | None:intergenic |
GACTGCGTCAAAGCAACCAA+AGG | 0.631800 | 1_1:-30166111 | None:intergenic |
AGCGGGGATAATGAAAGTGT+TGG | 0.635236 | 1_1:+30165846 | Msa0018070:CDS |
TAGGAAGTGGAGGAATACGC+GGG | 0.637423 | 1_1:+30165755 | Msa0018070:CDS |
TGTGTTGGTATCGGTGCCGG+AGG | 0.656005 | 1_1:+30165927 | Msa0018070:CDS |
AAGTTGACGGATGAGGTCAT+CGG | 0.659006 | 1_1:-30165265 | None:intergenic |
TCGGGAGGTAGAAGAAGTGG+TGG | 0.663074 | 1_1:-30165211 | None:intergenic |
ACATGTGTAACCAAGTCTTG+GGG | 0.663090 | 1_1:-30164935 | None:intergenic |
GCAGAGACAGAAGGAAATTG+CGG | 0.663880 | 1_1:+30166014 | Msa0018070:CDS |
GTGAGGGAATTCGAAAGTGG+TGG | 0.668042 | 1_1:+30166950 | Msa0018070:CDS |
ACAGAGAGTTACACATACAT+GGG | 0.672322 | 1_1:+30165102 | Msa0018070:CDS |
TAATAACCTGAGATAGACGA+AGG | 0.681280 | 1_1:-30165593 | None:intergenic |
ACAGATTTGTGAGGATAGCG+CGG | 0.684005 | 1_1:+30166050 | Msa0018070:CDS |
GTTGCAGTCACTGAAAGCGG+AGG | 0.687507 | 1_1:-30165166 | None:intergenic |
CGCGGCGGTTCGATCCATGG+TGG | 0.687911 | 1_1:+30166068 | Msa0018070:CDS |
CAAAGAGAGATTCAAAATCG+CGG | 0.688714 | 1_1:-30165463 | None:intergenic |
GGTGTTGGTTGAGATTGTGG+AGG | 0.688844 | 1_1:+30165984 | Msa0018070:CDS |
GAAGGAGAATAAGATGAGAG+CGG | 0.703303 | 1_1:+30165819 | Msa0018070:CDS |
GAGACAGAAGGAAATTGCGG+CGG | 0.714686 | 1_1:+30166017 | Msa0018070:CDS |
TTGTTAAGGTGTAAACATCG+TGG | 0.748984 | 1_1:+30168440 | Msa0018070:three_prime_UTR |
ACTTCTTCGTCTACACACCG+TGG | 0.760862 | 1_1:+30165003 | Msa0018070:five_prime_UTR |
GATTTGTGAGGATAGCGCGG+CGG | 0.801712 | 1_1:+30166053 | Msa0018070:CDS |
ACAGGTGGAAGAGAACAAGG+CGG | 0.815311 | 1_1:+30165690 | Msa0018070:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAGTTTAAATATTAAATGA+AGG | + | chr1_1:30167654-30167673 | Msa0018070:intron | 10.0% |
!! | TAGTTTAAATATTAAATGAA+GGG | + | chr1_1:30167655-30167674 | Msa0018070:intron | 10.0% |
!! | TAATAAATTAATAATAATGC+AGG | - | chr1_1:30168077-30168096 | None:intergenic | 10.0% |
!!! | TTTGTTTTCAATTTAATTAG+AGG | + | chr1_1:30167452-30167471 | Msa0018070:intron | 15.0% |
!! | ATTAATTAACTAGATATCAA+TGG | + | chr1_1:30167497-30167516 | Msa0018070:intron | 15.0% |
!!! | TAATAATGTTTTTCTGTTTT+TGG | + | chr1_1:30168300-30168319 | Msa0018070:intron | 15.0% |
!!! | TTGATTATTGTAAGTTCTAA+CGG | + | chr1_1:30165659-30165678 | Msa0018070:intron | 20.0% |
!!! | ATAATATTCTACCTTTTGTT+TGG | - | chr1_1:30166151-30166170 | None:intergenic | 20.0% |
!! | AAATTGCTCAAAAAAAACTA+GGG | - | chr1_1:30167268-30167287 | None:intergenic | 20.0% |
!! | AAAATTGCTCAAAAAAAACT+AGG | - | chr1_1:30167267-30167286 | None:intergenic | 20.0% |
!!! | TGATTTAGAATCTAATTTCT+AGG | - | chr1_1:30166614-30166633 | None:intergenic | 20.0% |
!! | ACAGTATTCAATTGAAATAA+TGG | + | chr1_1:30166860-30166879 | Msa0018070:intron | 20.0% |
!!! | GGACTTTAAAATCAAAAAAA+GGG | + | chr1_1:30167229-30167248 | Msa0018070:intron | 20.0% |
!!! | TAGTTTTTTTTGAGCAATTT+TGG | - | chr1_1:30166396-30166415 | None:intergenic | 20.0% |
!! | AAATTGCTCAAAAAAAACTA+AGG | + | chr1_1:30167268-30167287 | Msa0018070:intron | 20.0% |
!! | AATTGCTCAAAAAAAACTAA+GGG | + | chr1_1:30167269-30167288 | Msa0018070:intron | 20.0% |
!! | CATTTAAGCCTTTAAATTAT+TGG | + | chr1_1:30167334-30167353 | Msa0018070:intron | 20.0% |
!! | AATTTGAGCCAATAATTTAA+AGG | - | chr1_1:30167345-30167364 | None:intergenic | 20.0% |
!!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr1_1:30167719-30167738 | None:intergenic | 20.0% |
!!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr1_1:30167720-30167739 | None:intergenic | 20.0% |
!! | TCTTGAATATTCTTATTGAA+TGG | + | chr1_1:30168128-30168147 | Msa0018070:intron | 20.0% |
!! | CTTGAATATTCTTATTGAAT+GGG | + | chr1_1:30168129-30168148 | Msa0018070:intron | 20.0% |
!! | GTTTGTAAATATCTTCTTAA+CGG | + | chr1_1:30168517-30168536 | Msa0018070:three_prime_UTR | 20.0% |
!! | AGAAAAGAATAAAATGTTAC+TGG | + | chr1_1:30168636-30168655 | Msa0018070:three_prime_UTR | 20.0% |
! | TACGAAAGGAGAATTTATAT+GGG | - | chr1_1:30164982-30165001 | None:intergenic | 25.0% |
! | GAAGTAACTAACGAAATTAA+TGG | - | chr1_1:30165411-30165430 | None:intergenic | 25.0% |
! | GATGTAATAGTTAGTTATAC+CGG | + | chr1_1:30165616-30165635 | Msa0018070:intron | 25.0% |
! | GACAACAACTAATAATTAAC+CGG | - | chr1_1:30165638-30165657 | None:intergenic | 25.0% |
!!! | TCCTGAATTTTGTTTTTACT+CGG | + | chr1_1:30166299-30166318 | Msa0018070:intron | 25.0% |
! | AATTGCTCAAAAAAAACTAG+GGG | - | chr1_1:30166395-30166414 | None:intergenic | 25.0% |
! | AATCAAAAAAGGGTAAATGT+GGG | - | chr1_1:30166425-30166444 | None:intergenic | 25.0% |
! | AAATCAAAAAAGGGTAAATG+TGG | - | chr1_1:30166426-30166445 | None:intergenic | 25.0% |
! | AAAAAATTATCAGGTGTGAA+AGG | - | chr1_1:30166508-30166527 | None:intergenic | 25.0% |
! | TGAAAAGGGAAAAAATTATC+AGG | - | chr1_1:30166517-30166536 | None:intergenic | 25.0% |
! | AACAGTTCCTAAGAAATTAT+GGG | - | chr1_1:30166712-30166731 | None:intergenic | 25.0% |
!!! | GGGACTTTAAAATCAAAAAA+AGG | + | chr1_1:30167228-30167247 | Msa0018070:intron | 25.0% |
! | AATCAAAAAAAGGGTAAATG+TGG | + | chr1_1:30167238-30167257 | Msa0018070:intron | 25.0% |
! | ATCAAAAAAAGGGTAAATGT+GGG | + | chr1_1:30167239-30167258 | Msa0018070:intron | 25.0% |
! | ATTGCTCAAAAAAAACTAAG+GGG | + | chr1_1:30167270-30167289 | Msa0018070:intron | 25.0% |
!! | GTTTTCTAATTGTGCAATTT+TGG | - | chr1_1:30167297-30167316 | None:intergenic | 25.0% |
! | AATTGCACAATTAGAAAACT+TGG | + | chr1_1:30167298-30167317 | Msa0018070:intron | 25.0% |
! | ATTGCACAATTAGAAAACTT+GGG | + | chr1_1:30167299-30167318 | Msa0018070:intron | 25.0% |
! | AAAAGAAGAGTTTCGATTTA+GGG | - | chr1_1:30167429-30167448 | None:intergenic | 25.0% |
! | CAAGCTGAATAATTCTTTAA+GGG | - | chr1_1:30167860-30167879 | None:intergenic | 25.0% |
! | TCAAGCTGAATAATTCTTTA+AGG | - | chr1_1:30167861-30167880 | None:intergenic | 25.0% |
! | TTAGACACAATTAGACAATA+GGG | - | chr1_1:30168016-30168035 | None:intergenic | 25.0% |
! | ATTAGACACAATTAGACAAT+AGG | - | chr1_1:30168017-30168036 | None:intergenic | 25.0% |
! | TTTAAGAACTATTTATGTCG+TGG | + | chr1_1:30168163-30168182 | Msa0018070:intron | 25.0% |
!!! | TAATGTTTTTCTGTTTTTGG+TGG | + | chr1_1:30168303-30168322 | Msa0018070:intron | 25.0% |
!!! | AATGTTTTTCTGTTTTTGGT+GGG | + | chr1_1:30168304-30168323 | Msa0018070:intron | 25.0% |
!!! | AAACCCTAGCAATTATTTTA+TGG | + | chr1_1:30168392-30168411 | Msa0018070:three_prime_UTR | 25.0% |
!!! | TTGAGTTTTGTTTGCTTTTT+TGG | + | chr1_1:30168577-30168596 | Msa0018070:three_prime_UTR | 25.0% |
GTACGAAAGGAGAATTTATA+TGG | - | chr1_1:30164983-30165002 | None:intergenic | 30.0% | |
!!! | GCAATTTTGATTCGATTTTC+CGG | - | chr1_1:30165369-30165388 | None:intergenic | 30.0% |
AATTTCGTTAGTTACTTCAC+AGG | + | chr1_1:30165413-30165432 | Msa0018070:CDS | 30.0% | |
AAAGAACTAATAGCTTCTTC+CGG | + | chr1_1:30165498-30165517 | Msa0018070:CDS | 30.0% | |
GAATTTAACGCTCTAACTAA+CGG | - | chr1_1:30165534-30165553 | None:intergenic | 30.0% | |
! | TTAGTTAGAGCGTTAAATTC+AGG | + | chr1_1:30165534-30165553 | Msa0018070:CDS | 30.0% |
!! | ATCGAATATGGTGGATAAAT+CGG | + | chr1_1:30165891-30165910 | Msa0018070:CDS | 30.0% |
TATTCTGTTACAGATTTGTG+AGG | + | chr1_1:30166041-30166060 | Msa0018070:CDS | 30.0% | |
AATTGCACAGTTAGAAAACT+TGG | - | chr1_1:30166366-30166385 | None:intergenic | 30.0% | |
! | GTTTTCTAACTGTGCAATTT+TGG | + | chr1_1:30166367-30166386 | Msa0018070:intron | 30.0% |
ATTGCTCAAAAAAAACTAGG+GGG | - | chr1_1:30166394-30166413 | None:intergenic | 30.0% | |
ATCAAAAAAGGGTAAATGTG+GGG | - | chr1_1:30166424-30166443 | None:intergenic | 30.0% | |
GGGACTTTCAAATCAAAAAA+GGG | - | chr1_1:30166435-30166454 | None:intergenic | 30.0% | |
! | CTAATTTCTAGGTTTGTGTT+TGG | - | chr1_1:30166603-30166622 | None:intergenic | 30.0% |
GAACAGTTCCTAAGAAATTA+TGG | - | chr1_1:30166713-30166732 | None:intergenic | 30.0% | |
GAATCAAAGTCATCTTCATT+AGG | - | chr1_1:30166834-30166853 | None:intergenic | 30.0% | |
!! | AGAAATAAAGAGGTGTTCAA+CGG | + | chr1_1:30167081-30167100 | Msa0018070:intron | 30.0% |
ATGAAAGAGGGAAAATTATC+AGG | + | chr1_1:30167146-30167165 | Msa0018070:intron | 30.0% | |
TCAAAAAAAGGGTAAATGTG+GGG | + | chr1_1:30167240-30167259 | Msa0018070:intron | 30.0% | |
TTGCACAATTAGAAAACTTG+GGG | + | chr1_1:30167300-30167319 | Msa0018070:intron | 30.0% | |
GAAAAGAAGAGTTTCGATTT+AGG | - | chr1_1:30167430-30167449 | None:intergenic | 30.0% | |
AATGTTAACTTATGCTCTCA+AGG | - | chr1_1:30167836-30167855 | None:intergenic | 30.0% | |
TTCATTATTGTCCAAACATG+TGG | - | chr1_1:30168236-30168255 | None:intergenic | 30.0% | |
GCACCATAAAATAATTGCTA+GGG | - | chr1_1:30168398-30168417 | None:intergenic | 30.0% | |
AGCACCATAAAATAATTGCT+AGG | - | chr1_1:30168399-30168418 | None:intergenic | 30.0% | |
AGTTTGTGGTGTAAATCATA+CGG | + | chr1_1:30168553-30168572 | Msa0018070:three_prime_UTR | 30.0% | |
TACATGTGTAACCAAGTCTT+GGG | - | chr1_1:30164939-30164958 | None:intergenic | 35.0% | |
TTACATGTGTAACCAAGTCT+TGG | - | chr1_1:30164940-30164959 | None:intergenic | 35.0% | |
GAGAATTTATATGGGAGAGA+GGG | - | chr1_1:30164974-30164993 | None:intergenic | 35.0% | |
AACAGAGAGTTACACATACA+TGG | + | chr1_1:30165101-30165120 | Msa0018070:CDS | 35.0% | |
ACAGAGAGTTACACATACAT+GGG | + | chr1_1:30165102-30165121 | Msa0018070:CDS | 35.0% | |
TTTCTGTTCTTCGATTGAGT+CGG | - | chr1_1:30165307-30165326 | None:intergenic | 35.0% | |
ATTGCTCGCAAAGAATAAAC+CGG | + | chr1_1:30165347-30165366 | Msa0018070:CDS | 35.0% | |
CGAATCAAAATTGCTAAAGC+TGG | + | chr1_1:30165375-30165394 | Msa0018070:CDS | 35.0% | |
CAAAGAGAGATTCAAAATCG+CGG | - | chr1_1:30165466-30165485 | None:intergenic | 35.0% | |
AACTAACGGTTTAATAGCTC+CGG | - | chr1_1:30165520-30165539 | None:intergenic | 35.0% | |
TAATAACCTGAGATAGACGA+AGG | - | chr1_1:30165596-30165615 | None:intergenic | 35.0% | |
GTTCTAACGGTAATGATTAC+AGG | + | chr1_1:30165672-30165691 | Msa0018070:intron | 35.0% | |
CCTAGAAGATTCACCAATAA+CGG | - | chr1_1:30165739-30165758 | None:intergenic | 35.0% | |
! | GGATTTTGAATCGAATATGG+TGG | + | chr1_1:30165882-30165901 | Msa0018070:CDS | 35.0% |
!! | TGTTTTGAGTGTGTTGGTAT+CGG | + | chr1_1:30165918-30165937 | Msa0018070:CDS | 35.0% |
GCCGAGTAAAAACAAAATTC+AGG | - | chr1_1:30166303-30166322 | None:intergenic | 35.0% | |
! | CGGCTAGTTCGATTTAAATT+AGG | + | chr1_1:30166319-30166338 | Msa0018070:intron | 35.0% |
TCAAAAAAGGGTAAATGTGG+GGG | - | chr1_1:30166423-30166442 | None:intergenic | 35.0% | |
GGGGACTTTCAAATCAAAAA+AGG | - | chr1_1:30166436-30166455 | None:intergenic | 35.0% | |
AAACAAATCCAACCGCATAT+GGG | - | chr1_1:30167201-30167220 | None:intergenic | 35.0% | |
! | ATTTCTAGGTTTGTGTTTGG+TGG | - | chr1_1:30166600-30166619 | None:intergenic | 35.0% |
TGCAATGAATTGAACACTCT+TGG | - | chr1_1:30166678-30166697 | None:intergenic | 35.0% | |
AGACTTGCCCATAATTTCTT+AGG | + | chr1_1:30166702-30166721 | Msa0018070:intron | 35.0% | |
GAAGTTGAATGTAGTGAATG+GGG | - | chr1_1:30166787-30166806 | None:intergenic | 35.0% | |
GGAAGTTGAATGTAGTGAAT+GGG | - | chr1_1:30166788-30166807 | None:intergenic | 35.0% | |
AGGAAGTTGAATGTAGTGAA+TGG | - | chr1_1:30166789-30166808 | None:intergenic | 35.0% | |
GAACACATTGAAACGTAAAG+AGG | - | chr1_1:30166809-30166828 | None:intergenic | 35.0% | |
TCAAAGTCATCTTCATTAGG+AGG | - | chr1_1:30166831-30166850 | None:intergenic | 35.0% | |
! | AGGATAATGTTGTTGTTGTG+AGG | + | chr1_1:30166933-30166952 | Msa0018070:intron | 35.0% |
! | GGATAATGTTGTTGTTGTGA+GGG | + | chr1_1:30166934-30166953 | Msa0018070:intron | 35.0% |
AGTTTGAATGAGGTTTATGG+TGG | + | chr1_1:30166995-30167014 | Msa0018070:intron | 35.0% | |
GTTTGAATGAGGTTTATGGT+GGG | + | chr1_1:30166996-30167015 | Msa0018070:intron | 35.0% | |
AAAGGGATGGAGAAATAAAG+AGG | + | chr1_1:30167071-30167090 | Msa0018070:intron | 35.0% | |
TGGAAGATAACAGATGAAAG+AGG | + | chr1_1:30167133-30167152 | Msa0018070:intron | 35.0% | |
GGAAGATAACAGATGAAAGA+GGG | + | chr1_1:30167134-30167153 | Msa0018070:intron | 35.0% | |
GGAAAATTATCAGGTGTGAA+AGG | + | chr1_1:30167155-30167174 | Msa0018070:intron | 35.0% | |
AAACAAATCCAACCGCATAT+GGG | + | chr1_1:30167201-30167220 | Msa0018070:intron | 35.0% | |
CAAAAAAAGGGTAAATGTGG+GGG | + | chr1_1:30167241-30167260 | Msa0018070:intron | 35.0% | |
TGCACAATTAGAAAACTTGG+GGG | + | chr1_1:30167301-30167320 | Msa0018070:intron | 35.0% | |
GGTTCGAATTCTTCATTGAT+TGG | + | chr1_1:30167518-30167537 | Msa0018070:intron | 35.0% | |
!! | TCATGTTAACTTGTGTCCTT+AGG | + | chr1_1:30167678-30167697 | Msa0018070:intron | 35.0% |
!! | CATGTTAACTTGTGTCCTTA+GGG | + | chr1_1:30167679-30167698 | Msa0018070:intron | 35.0% |
CATGTTAAGCAACCCAAAAA+TGG | + | chr1_1:30167704-30167723 | Msa0018070:intron | 35.0% | |
TCTTCCACCAAAGCAATAAA+CGG | - | chr1_1:30167930-30167949 | None:intergenic | 35.0% | |
AGACAATAGGGCAAAAATTG+CGG | - | chr1_1:30168004-30168023 | None:intergenic | 35.0% | |
AGAAACTAATTGAGCTTCTG+AGG | + | chr1_1:30168336-30168355 | Msa0018070:CDS | 35.0% | |
CATTCTGATGTTGTAGATCT+TGG | - | chr1_1:30168365-30168384 | None:intergenic | 35.0% | |
TTGTTAAGGTGTAAACATCG+TGG | + | chr1_1:30168440-30168459 | Msa0018070:three_prime_UTR | 35.0% | |
TGGTCAAGAACACAATGAAT+TGG | + | chr1_1:30168460-30168479 | Msa0018070:three_prime_UTR | 35.0% | |
! | GAGAAGCTTTGTAAAGTTTG+TGG | + | chr1_1:30168539-30168558 | Msa0018070:three_prime_UTR | 35.0% |
ACATGTGTAACCAAGTCTTG+GGG | - | chr1_1:30164938-30164957 | None:intergenic | 40.0% | |
GGAGAATTTATATGGGAGAG+AGG | - | chr1_1:30164975-30164994 | None:intergenic | 40.0% | |
! | TAGACGAAGAAGTGTACGAA+AGG | - | chr1_1:30164996-30165015 | None:intergenic | 40.0% |
GTTAGGCTTGGAATTAGGTT+CGG | - | chr1_1:30165064-30165083 | None:intergenic | 40.0% | |
TTTGCGTTAGGCTTGGAATT+AGG | - | chr1_1:30165069-30165088 | None:intergenic | 40.0% | |
GTAACTCTCTGTTCCCATAT+CGG | - | chr1_1:30165094-30165113 | None:intergenic | 40.0% | |
! | GATGAGGTCATCGGAATTTT+CGG | - | chr1_1:30165259-30165278 | None:intergenic | 40.0% |
GACCTGCAACTTCAAGAATA+CGG | + | chr1_1:30165435-30165454 | Msa0018070:CDS | 40.0% | |
CTAACGGTAATGATTACAGG+TGG | + | chr1_1:30165675-30165694 | Msa0018070:intron | 40.0% | |
ATTACAGGTGGAAGAGAACA+AGG | + | chr1_1:30165687-30165706 | Msa0018070:intron | 40.0% | |
ATCAGGTGCAATTCCGTTAT+TGG | + | chr1_1:30165723-30165742 | Msa0018070:CDS | 40.0% | |
CCGTTATTGGTGAATCTTCT+AGG | + | chr1_1:30165736-30165755 | Msa0018070:CDS | 40.0% | |
! | TTGGTGAATCTTCTAGGAAG+TGG | + | chr1_1:30165742-30165761 | Msa0018070:CDS | 40.0% |
GTATACTCTGTGTTCTGTGA+AGG | + | chr1_1:30165801-30165820 | Msa0018070:CDS | 40.0% | |
GAAGGAGAATAAGATGAGAG+CGG | + | chr1_1:30165819-30165838 | Msa0018070:CDS | 40.0% | |
!! | GAAAGTGTTGGTTGAGTTGA+TGG | + | chr1_1:30165858-30165877 | Msa0018070:CDS | 40.0% |
!! | GGCGGATTTTGAATCGAATA+TGG | + | chr1_1:30165879-30165898 | Msa0018070:CDS | 40.0% |
!! | GGCTTATGTTTTGAGTGTGT+TGG | + | chr1_1:30165912-30165931 | Msa0018070:CDS | 40.0% |
TGCACAGTTAGAAAACTTGG+AGG | - | chr1_1:30166363-30166382 | None:intergenic | 40.0% | |
GAAACAAATCCAACCGCATA+TGG | - | chr1_1:30166463-30166482 | None:intergenic | 40.0% | |
! | TGGTGGTAATGAGAAAGCAT+GGG | - | chr1_1:30166583-30166602 | None:intergenic | 40.0% |
! | TTGGTGGTAATGAGAAAGCA+TGG | - | chr1_1:30166584-30166603 | None:intergenic | 40.0% |
GGGAGTTTGAATGAGGTTTA+TGG | + | chr1_1:30166992-30167011 | Msa0018070:intron | 40.0% | |
TGGTGACAGGTTAACAATTG+CGG | + | chr1_1:30167022-30167041 | Msa0018070:intron | 40.0% | |
!! | AAAGTACCGTTGAAGGAAGA+CGG | + | chr1_1:30167046-30167065 | Msa0018070:intron | 40.0% |
CAAACAAATCCAACCGCATA+TGG | + | chr1_1:30167200-30167219 | Msa0018070:intron | 40.0% | |
AATAGGGCAAAAATTGCGGT+GGG | - | chr1_1:30168000-30168019 | None:intergenic | 40.0% | |
CGTATGAAATGAACGCAATG+AGG | - | chr1_1:30168049-30168068 | None:intergenic | 40.0% | |
CTATAGTAGTGCCACATGTT+TGG | + | chr1_1:30168222-30168241 | Msa0018070:intron | 40.0% | |
!!! | TTTCTGTTTTTGGTGGGTTC+AGG | + | chr1_1:30168310-30168329 | Msa0018070:intron | 40.0% |
! | AATCTCACACGTGCTTGTTA+AGG | + | chr1_1:30168426-30168445 | Msa0018070:three_prime_UTR | 40.0% |
GGAATTAGGTTCGGATGCTA+TGG | - | chr1_1:30165055-30165074 | None:intergenic | 45.0% | |
CCTAACGCAAACACCGATAT+GGG | + | chr1_1:30165078-30165097 | Msa0018070:exon | 45.0% | |
GGAAGTTGAATCGTCGTTGA+TGG | - | chr1_1:30165148-30165167 | None:intergenic | 45.0% | |
ACTGTTGCAGTCACTGAAAG+CGG | - | chr1_1:30165172-30165191 | None:intergenic | 45.0% | |
! | AAGTTGACGGATGAGGTCAT+CGG | - | chr1_1:30165268-30165287 | None:intergenic | 45.0% |
! | GAAGATCGGAGACAAGTTGA+CGG | - | chr1_1:30165281-30165300 | None:intergenic | 45.0% |
GATTGAGTCGGAGTGAAGAT+CGG | - | chr1_1:30165295-30165314 | None:intergenic | 45.0% | |
AGAACAGAAACAAGCTGCCA+TGG | + | chr1_1:30165317-30165336 | Msa0018070:CDS | 45.0% | |
TGCGAGCAATCGAATTTCCA+TGG | - | chr1_1:30165337-30165356 | None:intergenic | 45.0% | |
CACCGTATTCTTGAAGTTGC+AGG | - | chr1_1:30165440-30165459 | None:intergenic | 45.0% | |
! | GTGAATCTTCTAGGAAGTGG+AGG | + | chr1_1:30165745-30165764 | Msa0018070:CDS | 45.0% |
TAAGATGAGAGCGGTGAAAG+CGG | + | chr1_1:30165828-30165847 | Msa0018070:CDS | 45.0% | |
! | AGCGGGGATAATGAAAGTGT+TGG | + | chr1_1:30165846-30165865 | Msa0018070:CDS | 45.0% |
!! | AGTGTTGGTTGAGTTGATGG+CGG | + | chr1_1:30165861-30165880 | Msa0018070:CDS | 45.0% |
TCCACAATCTCAACCAACAC+CGG | - | chr1_1:30165985-30166004 | None:intergenic | 45.0% | |
TTGGTTGAGATTGTGGAGGT+TGG | + | chr1_1:30165988-30166007 | Msa0018070:CDS | 45.0% | |
GCAGAGACAGAAGGAAATTG+CGG | + | chr1_1:30166014-30166033 | Msa0018070:CDS | 45.0% | |
ACAGATTTGTGAGGATAGCG+CGG | + | chr1_1:30166050-30166069 | Msa0018070:CDS | 45.0% | |
CAAAGCAACCAAAGGAGGAA+TGG | - | chr1_1:30166106-30166125 | None:intergenic | 45.0% | |
CACAAATCGCGCCAAACAAA+AGG | + | chr1_1:30166137-30166156 | Msa0018070:CDS | 45.0% | |
GGGGATGGAAGAGATGAAAA+GGG | - | chr1_1:30166531-30166550 | None:intergenic | 45.0% | |
TGGGGATGGAAGAGATGAAA+AGG | - | chr1_1:30166532-30166551 | None:intergenic | 45.0% | |
! | TCATAGTGCTTGCTGAGATG+GGG | - | chr1_1:30166558-30166577 | None:intergenic | 45.0% |
! | GTCATAGTGCTTGCTGAGAT+GGG | - | chr1_1:30166559-30166578 | None:intergenic | 45.0% |
! | AGTCATAGTGCTTGCTGAGA+TGG | - | chr1_1:30166560-30166579 | None:intergenic | 45.0% |
AGAAGAGGAAACGTAGAGAG+AGG | - | chr1_1:30166753-30166772 | None:intergenic | 45.0% | |
TACGTTTCCTCTTCTCCATG+TGG | + | chr1_1:30166758-30166777 | Msa0018070:intron | 45.0% | |
! | ACTGCATGTGTTGTTGGATC+AGG | + | chr1_1:30166913-30166932 | Msa0018070:intron | 45.0% |
GTTGTGAGGGAATTCGAAAG+TGG | + | chr1_1:30166947-30166966 | Msa0018070:CDS | 45.0% | |
GGTATGTGGGAGTTTGAATG+AGG | + | chr1_1:30166985-30167004 | Msa0018070:intron | 45.0% | |
!! | ATGAGGTTTATGGTGGGTGA+TGG | + | chr1_1:30167002-30167021 | Msa0018070:intron | 45.0% |
CTTTCACCGTCTTCCTTCAA+CGG | - | chr1_1:30167055-30167074 | None:intergenic | 45.0% | |
GTTGAAGGAAGACGGTGAAA+GGG | + | chr1_1:30167054-30167073 | Msa0018070:intron | 45.0% | |
GTTGCTTAACATGTGCCCTA+AGG | - | chr1_1:30167697-30167716 | None:intergenic | 45.0% | |
!! | CATGGTGCCGTTTATTGCTT+TGG | + | chr1_1:30167920-30167939 | Msa0018070:intron | 45.0% |
CAATAGGGCAAAAATTGCGG+TGG | - | chr1_1:30168001-30168020 | None:intergenic | 45.0% | |
TGTCGTGGAAGCTTATCATG+CGG | + | chr1_1:30168178-30168197 | Msa0018070:intron | 45.0% | |
!! | ATTTAATATTTAAACTAAAA+TGG | - | chr1_1:30167652-30167671 | None:intergenic | 5.0% |
GTAACCAAGTCTTGGGGTGT+AGG | - | chr1_1:30164932-30164951 | None:intergenic | 50.0% | |
ACTTCTTCGTCTACACACCG+TGG | + | chr1_1:30165003-30165022 | Msa0018070:five_prime_UTR | 50.0% | |
GGATGCTATGGTTGTGGTTC+GGG | - | chr1_1:30165043-30165062 | None:intergenic | 50.0% | |
CGGATGCTATGGTTGTGGTT+CGG | - | chr1_1:30165044-30165063 | None:intergenic | 50.0% | |
AGGTTCGGATGCTATGGTTG+TGG | - | chr1_1:30165049-30165068 | None:intergenic | 50.0% | |
! | ATCGGTGTTTGCGTTAGGCT+TGG | - | chr1_1:30165076-30165095 | None:intergenic | 50.0% |
GCCTAACGCAAACACCGATA+TGG | + | chr1_1:30165077-30165096 | Msa0018070:exon | 50.0% | |
! | CCCATATCGGTGTTTGCGTT+AGG | - | chr1_1:30165081-30165100 | None:intergenic | 50.0% |
GACTGCAACAGTGACAGATC+CGG | + | chr1_1:30165180-30165199 | Msa0018070:CDS | 50.0% | |
!! | ATCGGAATTTTCGGAAGCGC+AGG | - | chr1_1:30165250-30165269 | None:intergenic | 50.0% |
TGCTCTCCTTCGTCTATCTC+AGG | + | chr1_1:30165587-30165606 | Msa0018070:CDS | 50.0% | |
ACAGGTGGAAGAGAACAAGG+CGG | + | chr1_1:30165690-30165709 | Msa0018070:intron | 50.0% | |
CTAGGAAGTGGAGGAATACG+CGG | + | chr1_1:30165754-30165773 | Msa0018070:CDS | 50.0% | |
TAGGAAGTGGAGGAATACGC+GGG | + | chr1_1:30165755-30165774 | Msa0018070:CDS | 50.0% | |
AAGATGAGAGCGGTGAAAGC+GGG | + | chr1_1:30165829-30165848 | Msa0018070:CDS | 50.0% | |
! | AAGGTTGCGTTGGTGGAAGA+AGG | + | chr1_1:30165952-30165971 | Msa0018070:CDS | 50.0% |
!! | GGTGTTGGTTGAGATTGTGG+AGG | + | chr1_1:30165984-30166003 | Msa0018070:CDS | 50.0% |
GAGACAGAAGGAAATTGCGG+CGG | + | chr1_1:30166017-30166036 | Msa0018070:CDS | 50.0% | |
!! | TGAAGGTGCCATTCCTCCTT+TGG | + | chr1_1:30166095-30166114 | Msa0018070:CDS | 50.0% |
TGCGTCAAAGCAACCAAAGG+AGG | - | chr1_1:30166111-30166130 | None:intergenic | 50.0% | |
GACTGCGTCAAAGCAACCAA+AGG | - | chr1_1:30166114-30166133 | None:intergenic | 50.0% | |
! | TTGGTTGCTTTGACGCAGTC+CGG | + | chr1_1:30166114-30166133 | Msa0018070:CDS | 50.0% |
TTGTTTGGCGCGATTTGTGC+CGG | - | chr1_1:30166136-30166155 | None:intergenic | 50.0% | |
AAAGTCCCCACACCCATATG+CGG | + | chr1_1:30166447-30166466 | Msa0018070:intron | 50.0% | |
ATCCAACCGCATATGGGTGT+GGG | - | chr1_1:30167207-30167226 | None:intergenic | 50.0% | |
AATCCAACCGCATATGGGTG+TGG | - | chr1_1:30167206-30167225 | None:intergenic | 50.0% | |
CTTGCTGAGATGGGGAATTG+GGG | - | chr1_1:30166550-30166569 | None:intergenic | 50.0% | |
! | GCTTGCTGAGATGGGGAATT+GGG | - | chr1_1:30166551-30166570 | None:intergenic | 50.0% |
! | TGCTTGCTGAGATGGGGAAT+TGG | - | chr1_1:30166552-30166571 | None:intergenic | 50.0% |
TAGTGAATGGGGAGACCACA+TGG | - | chr1_1:30166776-30166795 | None:intergenic | 50.0% | |
CCAACAACACATGCAGTCGA+AGG | - | chr1_1:30166910-30166929 | None:intergenic | 50.0% | |
CCTTCGACTGCATGTGTTGT+TGG | + | chr1_1:30166907-30166926 | Msa0018070:intron | 50.0% | |
GTGAGGGAATTCGAAAGTGG+TGG | + | chr1_1:30166950-30166969 | Msa0018070:CDS | 50.0% | |
! | GGAATTCGAAAGTGGTGGTG+AGG | + | chr1_1:30166955-30166974 | Msa0018070:CDS | 50.0% |
! | AAAGTGGTGGTGAGGAAGAG+AGG | + | chr1_1:30166963-30166982 | Msa0018070:CDS | 50.0% |
! | AAGTGGTGGTGAGGAAGAGA+GGG | + | chr1_1:30166964-30166983 | Msa0018070:CDS | 50.0% |
! | GTGAGGAAGAGAGGGTATGT+GGG | + | chr1_1:30166972-30166991 | Msa0018070:intron | 50.0% |
!! | TTATGGTGGGTGATGGTGAC+AGG | + | chr1_1:30167009-30167028 | Msa0018070:intron | 50.0% |
!! | TTGCGGCAAAGTACCGTTGA+AGG | + | chr1_1:30167039-30167058 | Msa0018070:intron | 50.0% |
CGTTGAAGGAAGACGGTGAA+AGG | + | chr1_1:30167053-30167072 | Msa0018070:intron | 50.0% | |
AAGGAAGACGGTGAAAGGGA+TGG | + | chr1_1:30167058-30167077 | Msa0018070:intron | 50.0% | |
GGAGTCAACTGTACGCTGAA+GGG | + | chr1_1:30167102-30167121 | Msa0018070:intron | 50.0% | |
TCAACTGTACGCTGAAGGGA+GGG | + | chr1_1:30167106-30167125 | Msa0018070:intron | 50.0% | |
AATCCAACCGCATATGGGTG+TGG | + | chr1_1:30167206-30167225 | Msa0018070:intron | 50.0% | |
ATCCAACCGCATATGGGTGT+GGG | + | chr1_1:30167207-30167226 | Msa0018070:intron | 50.0% | |
AAAGTCCCCACACCCATATG+CGG | - | chr1_1:30166447-30166466 | None:intergenic | 50.0% | |
AGCATTGCTCCCTCAACTTG+CGG | + | chr1_1:30167885-30167904 | Msa0018070:intron | 50.0% | |
!! | GGTGCCGTTTATTGCTTTGG+TGG | + | chr1_1:30167923-30167942 | Msa0018070:intron | 50.0% |
GCAAGAACAATGAGTCGACG+TGG | - | chr1_1:30167963-30167982 | None:intergenic | 50.0% | |
!! | TGTGGTTCGGGTTGGAGGTT+CGG | - | chr1_1:30165031-30165050 | None:intergenic | 55.0% |
!! | ATGGTTGTGGTTCGGGTTGG+AGG | - | chr1_1:30165036-30165055 | None:intergenic | 55.0% |
! | GCTATGGTTGTGGTTCGGGT+TGG | - | chr1_1:30165039-30165058 | None:intergenic | 55.0% |
GTTGCAGTCACTGAAAGCGG+AGG | - | chr1_1:30165169-30165188 | None:intergenic | 55.0% | |
! | AGAAGTGGTGGCGAATTCGC+CGG | - | chr1_1:30165202-30165221 | None:intergenic | 55.0% |
TCGGGAGGTAGAAGAAGTGG+TGG | - | chr1_1:30165214-30165233 | None:intergenic | 55.0% | |
TCGTCGGGAGGTAGAAGAAG+TGG | - | chr1_1:30165217-30165236 | None:intergenic | 55.0% | |
!! | AATTTTCGGAAGCGCAGGCG+AGG | - | chr1_1:30165245-30165264 | None:intergenic | 55.0% |
! | CGGAGACAAGTTGACGGATG+AGG | - | chr1_1:30165275-30165294 | None:intergenic | 55.0% |
GAAGAGAACAAGGCGGCGAT+TGG | + | chr1_1:30165697-30165716 | Msa0018070:CDS | 55.0% | |
AAGGCGGCGATTGGAAGATC+AGG | + | chr1_1:30165706-30165725 | Msa0018070:CDS | 55.0% | |
TGGAGGAATACGCGGGAAGA+AGG | + | chr1_1:30165762-30165781 | Msa0018070:CDS | 55.0% | |
AGATGAGAGCGGTGAAAGCG+GGG | + | chr1_1:30165830-30165849 | Msa0018070:CDS | 55.0% | |
!! | GAGTGTGTTGGTATCGGTGC+CGG | + | chr1_1:30165924-30165943 | Msa0018070:CDS | 55.0% |
! | GTTGCGTTGGTGGAAGAAGG+TGG | + | chr1_1:30165955-30165974 | Msa0018070:CDS | 55.0% |
!! | GCCGGTGTTGGTTGAGATTG+TGG | + | chr1_1:30165981-30166000 | Msa0018070:CDS | 55.0% |
GGTTGGATCGCAGAGACAGA+AGG | + | chr1_1:30166005-30166024 | Msa0018070:CDS | 55.0% | |
GATTTGTGAGGATAGCGCGG+CGG | + | chr1_1:30166053-30166072 | Msa0018070:CDS | 55.0% | |
TCCAACCGCATATGGGTGTG+GGG | - | chr1_1:30167208-30167227 | None:intergenic | 55.0% | |
CTGAGATGGGGAATTGGGGA+TGG | - | chr1_1:30166546-30166565 | None:intergenic | 55.0% | |
! | GGTGAGGAAGAGAGGGTATG+TGG | + | chr1_1:30166971-30166990 | Msa0018070:intron | 55.0% |
CGGAGTCAACTGTACGCTGA+AGG | + | chr1_1:30167101-30167120 | Msa0018070:intron | 55.0% | |
GTCAACTGTACGCTGAAGGG+AGG | + | chr1_1:30167105-30167124 | Msa0018070:intron | 55.0% | |
TACGCTGAAGGGAGGGAGAA+TGG | + | chr1_1:30167113-30167132 | Msa0018070:intron | 55.0% | |
TCCAACCGCATATGGGTGTG+GGG | + | chr1_1:30167208-30167227 | Msa0018070:intron | 55.0% | |
! | CGTCAGCTACCGCAAGTTGA+GGG | - | chr1_1:30167897-30167916 | None:intergenic | 55.0% |
ACGTCAGCTACCGCAAGTTG+AGG | - | chr1_1:30167898-30167917 | None:intergenic | 55.0% | |
TTGCGGTAGCTGACGTTGCA+TGG | + | chr1_1:30167902-30167921 | Msa0018070:intron | 55.0% | |
GCAAAAATTGCGGTGGGTGG+AGG | - | chr1_1:30167994-30168013 | None:intergenic | 55.0% | |
AGGGCAAAAATTGCGGTGGG+TGG | - | chr1_1:30167997-30168016 | None:intergenic | 55.0% | |
CGGGAAGAAGGACGCGTCTA+CGG | + | chr1_1:30165774-30165793 | Msa0018070:CDS | 60.0% | |
!! | TGTGTTGGTATCGGTGCCGG+AGG | + | chr1_1:30165927-30165946 | Msa0018070:CDS | 60.0% |
ACCAACGCAACCTTCGCCTC+CGG | - | chr1_1:30165946-30165965 | None:intergenic | 60.0% | |
GGTGGAAGAAGGTGGTGTGC+CGG | + | chr1_1:30165963-30165982 | Msa0018070:CDS | 60.0% | |
! | AGAAGGTGGTGTGCCGGTGT+TGG | + | chr1_1:30165969-30165988 | Msa0018070:CDS | 60.0% |
CGATCCATGGTGGCTCGTGA+AGG | + | chr1_1:30166078-30166097 | Msa0018070:CDS | 60.0% | |
TCCCCACACCCATATGCGGT+TGG | + | chr1_1:30166451-30166470 | Msa0018070:intron | 60.0% | |
GGGGAGACCACATGGAGAAG+AGG | - | chr1_1:30166768-30166787 | None:intergenic | 60.0% | |
TCCCCACACCCATATGCGGT+TGG | - | chr1_1:30166451-30166470 | None:intergenic | 60.0% | |
GGGTTGGAGGTTCGGAGCCA+CGG | - | chr1_1:30165023-30165042 | None:intergenic | 65.0% | |
GCAGGCGAGGAAGAGTCGTC+GGG | - | chr1_1:30165232-30165251 | None:intergenic | 65.0% | |
CGCAGGCGAGGAAGAGTCGT+CGG | - | chr1_1:30165233-30165252 | None:intergenic | 65.0% | |
GGAGGCGAAGGTTGCGTTGG+TGG | + | chr1_1:30165945-30165964 | Msa0018070:CDS | 65.0% | |
TAGCGCGGCGGTTCGATCCA+TGG | + | chr1_1:30166065-30166084 | Msa0018070:CDS | 65.0% | |
GGCACCTTCACGAGCCACCA+TGG | - | chr1_1:30166085-30166104 | None:intergenic | 65.0% | |
GGCGAGGAAGAGTCGTCGGG+AGG | - | chr1_1:30165229-30165248 | None:intergenic | 70.0% | |
!! | GGTATCGGTGCCGGAGGCGA+AGG | + | chr1_1:30165933-30165952 | Msa0018070:CDS | 70.0% |
GCCGGAGGCGAAGGTTGCGT+TGG | + | chr1_1:30165942-30165961 | Msa0018070:CDS | 70.0% | |
CGCGGCGGTTCGATCCATGG+TGG | + | chr1_1:30166068-30166087 | Msa0018070:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 30164929 | 30168660 | 30164929 | ID=Msa0018070;Name=Msa0018070 |
chr1_1 | mRNA | 30164929 | 30168660 | 30164929 | ID=Msa0018070-mRNA-1;Parent=Msa0018070;Name=Msa0018070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=167|0.33|0.75|0.75|1|1|4|275|360 |
chr1_1 | exon | 30164929 | 30165608 | 30164929 | ID=Msa0018070-mRNA-1:exon:10041;Parent=Msa0018070-mRNA-1 |
chr1_1 | exon | 30165694 | 30166158 | 30165694 | ID=Msa0018070-mRNA-1:exon:10042;Parent=Msa0018070-mRNA-1 |
chr1_1 | exon | 30166935 | 30166985 | 30166935 | ID=Msa0018070-mRNA-1:exon:10043;Parent=Msa0018070-mRNA-1 |
chr1_1 | exon | 30168332 | 30168660 | 30168332 | ID=Msa0018070-mRNA-1:exon:10044;Parent=Msa0018070-mRNA-1 |
chr1_1 | five_prime_UTR | 30164929 | 30165095 | 30164929 | ID=Msa0018070-mRNA-1:five_prime_utr;Parent=Msa0018070-mRNA-1 |
chr1_1 | CDS | 30165096 | 30165608 | 30165096 | ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1 |
chr1_1 | CDS | 30165694 | 30166158 | 30165694 | ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1 |
chr1_1 | CDS | 30166935 | 30166985 | 30166935 | ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1 |
chr1_1 | CDS | 30168332 | 30168385 | 30168332 | ID=Msa0018070-mRNA-1:cds;Parent=Msa0018070-mRNA-1 |
chr1_1 | three_prime_UTR | 30168386 | 30168660 | 30168386 | ID=Msa0018070-mRNA-1:three_prime_utr;Parent=Msa0018070-mRNA-1 |
Gene Sequence |
Protein sequence |