Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099470 | XP_013465876.1 | 98.864 | 264 | 2 | 1 | 1 | 264 | 1 | 263 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099470 | sp|Q5XEM9|ALFL5_ARATH | 71.212 | 264 | 72 | 2 | 1 | 264 | 1 | 260 | 2.40e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099470 | A0A072VES1 | 98.864 | 264 | 2 | 1 | 1 | 264 | 1 | 263 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0099470 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099470 | Msa0099590 | 0.900479 | 7.031457e-78 | -8.615850e-47 |
| Msa0099470 | Msa0148200 | 0.848489 | 5.934667e-60 | -8.615850e-47 |
| Msa0099470 | Msa1043550 | 0.890104 | 1.332306e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099470 | MtrunA17_Chr1g0150821 | 98.864 | 264 | 2 | 1 | 1 | 264 | 1 | 263 | 0.0 | 541 |
| Msa0099470 | MtrunA17_Chr8g0343441 | 77.992 | 259 | 46 | 3 | 8 | 264 | 7 | 256 | 1.08e-129 | 367 |
| Msa0099470 | MtrunA17_Chr2g0300241 | 74.427 | 262 | 50 | 3 | 5 | 264 | 7 | 253 | 1.93e-124 | 354 |
| Msa0099470 | MtrunA17_Chr4g0076771 | 70.196 | 255 | 65 | 3 | 10 | 263 | 10 | 254 | 1.35e-112 | 324 |
| Msa0099470 | MtrunA17_Chr2g0329821 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 5.87e-111 | 320 |
| Msa0099470 | MtrunA17_Chr4g0006381 | 62.109 | 256 | 78 | 4 | 9 | 264 | 6 | 242 | 8.67e-94 | 276 |
| Msa0099470 | MtrunA17_Chr7g0242511 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 4.92e-93 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099470 | AT5G20510.1 | 71.212 | 264 | 72 | 2 | 1 | 264 | 1 | 260 | 2.44e-123 | 352 |
| Msa0099470 | AT3G42790.1 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 9.17e-123 | 350 |
| Msa0099470 | AT2G02470.1 | 69.804 | 255 | 70 | 3 | 10 | 264 | 9 | 256 | 4.27e-110 | 318 |
| Msa0099470 | AT2G02470.2 | 67.188 | 256 | 66 | 3 | 10 | 264 | 9 | 247 | 1.03e-108 | 314 |
| Msa0099470 | AT5G26210.1 | 77.692 | 260 | 50 | 1 | 4 | 263 | 3 | 254 | 8.85e-108 | 312 |
| Msa0099470 | AT1G14510.1 | 66.667 | 252 | 72 | 2 | 10 | 261 | 9 | 248 | 2.73e-106 | 308 |
| Msa0099470 | AT5G20510.2 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.56e-98 | 286 |
| Msa0099470 | AT5G05610.2 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 3.77e-97 | 285 |
| Msa0099470 | AT5G05610.1 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 3.77e-97 | 285 |
| Msa0099470 | AT3G11200.1 | 61.597 | 263 | 83 | 3 | 1 | 263 | 1 | 245 | 1.95e-96 | 283 |
| Msa0099470 | AT5G20510.3 | 77.301 | 163 | 37 | 0 | 6 | 168 | 6 | 168 | 9.20e-82 | 244 |
| Msa0099470 | AT3G11200.2 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.14e-80 | 241 |
| Msa0099470 | AT2G02470.3 | 78.667 | 150 | 31 | 1 | 10 | 159 | 9 | 157 | 1.85e-71 | 220 |
Find 89 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1_3:-5679926 | Msa0099470:CDS |
| CTATCGAATTGTTCCGAATT+AGG | 0.126367 | 1_3:-5677757 | Msa0099470:three_prime_UTR |
| TAAGGTATGTTATATTAATT+AGG | 0.274725 | 1_3:-5677791 | Msa0099470:three_prime_UTR |
| AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1_3:-5679801 | Msa0099470:CDS |
| GCTATGCAGCTGACGAGTTC+TGG | 0.291054 | 1_3:-5678041 | Msa0099470:CDS |
| ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1_3:-5678781 | Msa0099470:CDS |
| CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1_3:+5678705 | None:intergenic |
| ACTAATTTGTTTAGTTGATC+AGG | 0.353424 | 1_3:-5677839 | Msa0099470:three_prime_UTR |
| TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1_3:-5678775 | Msa0099470:CDS |
| TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1_3:+5677964 | None:intergenic |
| GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1_3:+5678699 | None:intergenic |
| CTGACATAAATATCCTAATT+CGG | 0.385685 | 1_3:+5677744 | None:intergenic |
| GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1_3:+5678784 | None:intergenic |
| CTCCTATATCCATTGCTTCA+AGG | 0.401682 | 1_3:+5677901 | None:intergenic |
| CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1_3:-5678704 | Msa0099470:intron |
| AAGATAAGAGAGTGAGATTG+TGG | 0.422672 | 1_3:+5682120 | None:intergenic |
| TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1_3:+5679845 | None:intergenic |
| TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1_3:-5679721 | Msa0099470:intron |
| TTATAGTATGTAACTGTACT+TGG | 0.436876 | 1_3:-5677679 | Msa0099470:three_prime_UTR |
| GCTCGCTCGGAAATCCATAA+AGG | 0.438097 | 1_3:+5679912 | None:intergenic |
| GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1_3:-5679830 | Msa0099470:CDS |
| GTTACATACTATAAAACTTA+AGG | 0.440343 | 1_3:+5677688 | None:intergenic |
| TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1_3:+5679872 | None:intergenic |
| AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1_3:+5679854 | None:intergenic |
| ATCTGCATTGCCATTGCCAT+TGG | 0.459684 | 1_3:+5678162 | None:intergenic |
| GCCCTTGAAGCAATGGATAT+AGG | 0.461748 | 1_3:-5677903 | Msa0099470:exon |
| GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1_3:+5677928 | None:intergenic |
| TCCTATATCCATTGCTTCAA+GGG | 0.467689 | 1_3:+5677902 | None:intergenic |
| TTCACCTCCCACTGCTCGCT+CGG | 0.467752 | 1_3:+5679899 | None:intergenic |
| CAACTCTAGGACTCGGGTGG+TGG | 0.482465 | 1_3:+5677626 | None:intergenic |
| ATATAGGAGTTTGTGTAGAT+TGG | 0.482847 | 1_3:-5677887 | Msa0099470:three_prime_UTR |
| CTTGTTGTATGCACAACTCT+AGG | 0.488102 | 1_3:+5677613 | None:intergenic |
| TAAGAGAGTGAGATTGTGGA+GGG | 0.488743 | 1_3:+5682124 | None:intergenic |
| TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1_3:+5682039 | None:intergenic |
| GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1_3:-5678014 | Msa0099470:CDS |
| TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1_3:-5679765 | Msa0099470:CDS |
| TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1_3:-5681843 | Msa0099470:intron |
| ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1_3:-5682066 | Msa0099470:exon |
| ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1_3:-5679811 | Msa0099470:CDS |
| AGAAGACCGACCGGTGGTGA+GGG | 0.513493 | 1_3:+5681969 | None:intergenic |
| AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1_3:-5678771 | Msa0099470:CDS |
| TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1_3:-5679816 | Msa0099470:CDS |
| GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1_3:-5679851 | Msa0099470:CDS |
| TTAATTAAAGCCCTCACCAC+CGG | 0.530739 | 1_3:-5681979 | Msa0099470:intron |
| AAGACTTCTTCGACAGTACG+AGG | 0.536014 | 1_3:+5682030 | None:intergenic |
| TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1_3:-5679778 | Msa0099470:CDS |
| GAAGTCTTTCGAGATTTCAA+AGG | 0.539441 | 1_3:-5682015 | Msa0099470:CDS |
| ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1_3:-5678763 | Msa0099470:CDS |
| AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1_3:-5678103 | Msa0099470:CDS |
| AGAGCTCGCCCTTGAAGCAA+TGG | 0.549499 | 1_3:-5677910 | Msa0099470:exon |
| TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1_3:-5679729 | Msa0099470:CDS |
| CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1_3:-5678780 | Msa0099470:CDS |
| CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1_3:+5682059 | None:intergenic |
| GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1_3:+5679839 | None:intergenic |
| GCAGTCAAAGGATGAGGTTG+AGG | 0.565823 | 1_3:-5678139 | Msa0099470:CDS |
| ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1_3:-5678006 | Msa0099470:CDS |
| GCAGATGCAGTCAAAGGATG+AGG | 0.569670 | 1_3:-5678145 | Msa0099470:CDS |
| ATAAGAGAGTGAGATTGTGG+AGG | 0.569849 | 1_3:+5682123 | None:intergenic |
| TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1_3:-5679852 | Msa0099470:CDS |
| TATGCACAACTCTAGGACTC+GGG | 0.572720 | 1_3:+5677620 | None:intergenic |
| GTATGCACAACTCTAGGACT+CGG | 0.573947 | 1_3:+5677619 | None:intergenic |
| CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1_3:-5677977 | Msa0099470:CDS |
| TGGATTTCCGAGCGAGCAGT+GGG | 0.579516 | 1_3:-5679906 | Msa0099470:CDS |
| GGCAATGCAGATGCAGTCAA+AGG | 0.579948 | 1_3:-5678151 | Msa0099470:CDS |
| CTTTCTCAACAACAAAGAGA+AGG | 0.580893 | 1_3:-5682165 | Msa0099470:five_prime_UTR |
| GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1_3:+5679857 | None:intergenic |
| GAGAAGACCGACCGGTGGTG+AGG | 0.589238 | 1_3:+5681968 | None:intergenic |
| GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1_3:-5677978 | Msa0099470:CDS |
| TGAAGTGAAACTGAAAGAAA+CGG | 0.600500 | 1_3:+5682094 | None:intergenic |
| ATGGATTTCCGAGCGAGCAG+TGG | 0.601477 | 1_3:-5679907 | Msa0099470:CDS |
| TATTACCGGGATCACACTGC+TGG | 0.607631 | 1_3:+5681838 | None:intergenic |
| GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1_3:-5678069 | Msa0099470:CDS |
| AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1_3:-5678077 | Msa0099470:CDS |
| GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1_3:-5678118 | Msa0099470:CDS |
| AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1_3:-5678112 | Msa0099470:CDS |
| TTTCTCAACAACAAAGAGAA+GGG | 0.630443 | 1_3:-5682164 | Msa0099470:five_prime_UTR |
| GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1_3:-5678078 | Msa0099470:CDS |
| GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1_3:-5679885 | Msa0099470:CDS |
| CTTCACAACAACAACAACCA+TGG | 0.637637 | 1_3:-5682076 | Msa0099470:exon |
| AGACTTCTTCGACAGTACGA+GGG | 0.643030 | 1_3:+5682031 | None:intergenic |
| GATGAGGTTGAGGATGAAGA+TGG | 0.646194 | 1_3:-5678129 | Msa0099470:CDS |
| GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1_3:-5678093 | Msa0099470:CDS |
| ATTTCCGAGCGAGCAGTGGG+AGG | 0.670558 | 1_3:-5679903 | Msa0099470:CDS |
| GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1_3:-5678123 | Msa0099470:CDS |
| GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1_3:-5678758 | Msa0099470:CDS |
| GCACAACTCTAGGACTCGGG+TGG | 0.694311 | 1_3:+5677623 | None:intergenic |
| AATTCGGAACAATTCGATAG+CGG | 0.704679 | 1_3:+5677760 | None:intergenic |
| ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1_3:-5678076 | Msa0099470:CDS |
| AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1_3:-5677983 | Msa0099470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTATCATAAGAT+GGG | + | chr1_3:5679187-5679206 | None:intergenic | 10.0% |
| !!! | AAAATTATTTTATCATAAGA+TGG | + | chr1_3:5679188-5679207 | None:intergenic | 10.0% |
| !!! | TTTTCAATTAGTTTTAATTT+TGG | - | chr1_3:5679610-5679629 | Msa0099470:intron | 10.0% |
| !!! | ATTTATAATTTGTTGTATGA+TGG | - | chr1_3:5679096-5679115 | Msa0099470:intron | 15.0% |
| !!! | AATTATTTTATCATAAGATG+GGG | + | chr1_3:5679186-5679205 | None:intergenic | 15.0% |
| !! | AAAATTGAAATGTTCATTTA+CGG | - | chr1_3:5679400-5679419 | Msa0099470:intron | 15.0% |
| !!! | CAGTTAATTTTAATTTTTTC+AGG | - | chr1_3:5679654-5679673 | Msa0099470:intron | 15.0% |
| !!! | TTGATTGTATTTTGTATTTT+TGG | - | chr1_3:5679848-5679867 | Msa0099470:CDS | 15.0% |
| !!! | GACTTTTTTTATTTGAATTT+TGG | - | chr1_3:5680193-5680212 | Msa0099470:intron | 15.0% |
| !!! | TTTTTTATTTGAATTTTGGT+TGG | - | chr1_3:5680197-5680216 | Msa0099470:intron | 15.0% |
| !!! | AAATTATGTGATGTTTTATT+TGG | - | chr1_3:5680338-5680357 | Msa0099470:intron | 15.0% |
| !!! | AATTATGTGATGTTTTATTT+GGG | - | chr1_3:5680339-5680358 | Msa0099470:intron | 15.0% |
| !! | TAAGGTATGTTATATTAATT+AGG | - | chr1_3:5682038-5682057 | Msa0099470:CDS | 15.0% |
| !! | TTTACGAAATAGAATATTAC+CGG | + | chr1_3:5678008-5678027 | None:intergenic | 20.0% |
| !! | ATTTGCATATGAATTACATT+TGG | - | chr1_3:5678643-5678662 | Msa0099470:intron | 20.0% |
| !! | TTTAAACTTGAAGAATCTAA+TGG | + | chr1_3:5679291-5679310 | None:intergenic | 20.0% |
| !! | TTTAGTTAATCCTAATAGAA+AGG | - | chr1_3:5679351-5679370 | Msa0099470:intron | 20.0% |
| !!! | TGAAATTGAGTTACTTATTT+TGG | - | chr1_3:5679464-5679483 | Msa0099470:intron | 20.0% |
| !!! | TGTATGAAGATTTTAACTTA+GGG | - | chr1_3:5679514-5679533 | Msa0099470:intron | 20.0% |
| !! | AAGATAATCACTCTTATAAA+TGG | + | chr1_3:5680368-5680387 | None:intergenic | 20.0% |
| !! | ACAGTGATAAAAAAAATCAA+AGG | - | chr1_3:5680576-5680595 | Msa0099470:intron | 20.0% |
| !!! | TTAGTCTTGCTTTTAATTTA+AGG | - | chr1_3:5682020-5682039 | Msa0099470:CDS | 20.0% |
| !! | GTTACATACTATAAAACTTA+AGG | + | chr1_3:5682144-5682163 | None:intergenic | 20.0% |
| ! | ATCTGGAAAGAAAAAAAACA+CGG | + | chr1_3:5677957-5677976 | None:intergenic | 25.0% |
| ! | TTACGAAATAGAATATTACC+GGG | + | chr1_3:5678007-5678026 | None:intergenic | 25.0% |
| ! | TTCAATCACATTCAAAATTG+TGG | + | chr1_3:5678259-5678278 | None:intergenic | 25.0% |
| ! | ATTAATCACATGCAAAATTG+TGG | + | chr1_3:5678286-5678305 | None:intergenic | 25.0% |
| !! | AATTTTGCATGTGATTAATC+AGG | - | chr1_3:5678287-5678306 | Msa0099470:intron | 25.0% |
| ! | TGTAACTATAAGGGAAAATT+GGG | - | chr1_3:5678319-5678338 | Msa0099470:intron | 25.0% |
| ! | GTGTCTATTATTTACATACA+TGG | - | chr1_3:5678341-5678360 | Msa0099470:intron | 25.0% |
| ! | AATCAAAATGCTACCATTTA+TGG | - | chr1_3:5678441-5678460 | Msa0099470:intron | 25.0% |
| ! | ATCAAAATGCTACCATTTAT+GGG | - | chr1_3:5678442-5678461 | Msa0099470:intron | 25.0% |
| !!! | AAAATTTCTACTGTTTCTGT+TGG | - | chr1_3:5678482-5678501 | Msa0099470:intron | 25.0% |
| !! | TATCAACCAATCAAACATTT+TGG | + | chr1_3:5678540-5678559 | None:intergenic | 25.0% |
| ! | GTAGAAGAATCTATAATAGT+TGG | - | chr1_3:5678585-5678604 | Msa0099470:intron | 25.0% |
| ! | GTACTATATTACACTTCATA+GGG | + | chr1_3:5678743-5678762 | None:intergenic | 25.0% |
| !!! | AGCAAAACTTTATTTTGTTC+AGG | - | chr1_3:5678940-5678959 | Msa0099470:intron | 25.0% |
| !!! | TGAAATTTTTGAGCAAATCA+AGG | + | chr1_3:5679062-5679081 | None:intergenic | 25.0% |
| ! | CTAGATAATTCCTTTCTATT+AGG | + | chr1_3:5679364-5679383 | None:intergenic | 25.0% |
| ! | CTAATAGAAAGGAATTATCT+AGG | - | chr1_3:5679362-5679381 | Msa0099470:intron | 25.0% |
| !!! | AATTGAGTTACTTATTTTGG+CGG | - | chr1_3:5679467-5679486 | Msa0099470:intron | 25.0% |
| !!! | CTGTATGAAGATTTTAACTT+AGG | - | chr1_3:5679513-5679532 | Msa0099470:intron | 25.0% |
| ! | AATCCAGTATCAATATTCAA+GGG | + | chr1_3:5679549-5679568 | None:intergenic | 25.0% |
| ! | AAATCCAGTATCAATATTCA+AGG | + | chr1_3:5679550-5679569 | None:intergenic | 25.0% |
| ! | TTATATTCATCATTCAAGAG+GGG | + | chr1_3:5679718-5679737 | None:intergenic | 25.0% |
| ! | CTTATATTCATCATTCAAGA+GGG | + | chr1_3:5679719-5679738 | None:intergenic | 25.0% |
| !!! | AATATAAAAGTTCTGAAGGT+TGG | + | chr1_3:5679778-5679797 | None:intergenic | 25.0% |
| !! | GAGAAATATAAAAGTTCTGA+AGG | + | chr1_3:5679782-5679801 | None:intergenic | 25.0% |
| ! | AAAAATCAAAGGAAAACTAG+TGG | - | chr1_3:5680587-5680606 | Msa0099470:intron | 25.0% |
| ! | CTAAAAGGAAAGAAACAATA+AGG | + | chr1_3:5680810-5680829 | None:intergenic | 25.0% |
| !! | AAGATACTCGTTTTACTAAA+AGG | + | chr1_3:5680825-5680844 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGCCATTCATTGA+TGG | - | chr1_3:5680919-5680938 | Msa0099470:intron | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | + | chr1_3:5681269-5681288 | None:intergenic | 25.0% |
| ! | GTATGGTATTTAATCAGTTA+AGG | - | chr1_3:5681582-5681601 | Msa0099470:intron | 25.0% |
| !!! | ACTAATTTGTTTAGTTGATC+AGG | - | chr1_3:5681990-5682009 | Msa0099470:CDS | 25.0% |
| ! | CTGACATAAATATCCTAATT+CGG | + | chr1_3:5682088-5682107 | None:intergenic | 25.0% |
| ! | TTATAGTATGTAACTGTACT+TGG | - | chr1_3:5682150-5682169 | Msa0099470:five_prime_UTR | 25.0% |
| TTTCTCAACAACAAAGAGAA+GGG | - | chr1_3:5677665-5677684 | Msa0099470:three_prime_UTR | 30.0% | |
| TGAAGTGAAACTGAAAGAAA+CGG | + | chr1_3:5677738-5677757 | None:intergenic | 30.0% | |
| AGAAAAAACAGTTACAGAAG+TGG | - | chr1_3:5678099-5678118 | Msa0099470:CDS | 30.0% | |
| GAAAAAACAGTTACAGAAGT+GGG | - | chr1_3:5678100-5678119 | Msa0099470:CDS | 30.0% | |
| TCAAACACGTGATAAAAACA+AGG | + | chr1_3:5678184-5678203 | None:intergenic | 30.0% | |
| TCAATTCTAAGTCAAAGTTG+TGG | - | chr1_3:5678212-5678231 | Msa0099470:intron | 30.0% | |
| TGTTGCATGTGTAACTATAA+GGG | - | chr1_3:5678310-5678329 | Msa0099470:intron | 30.0% | |
| GTGTAACTATAAGGGAAAAT+TGG | - | chr1_3:5678318-5678337 | Msa0099470:intron | 30.0% | |
| GCTTGTACTATTGTTCATTT+AGG | - | chr1_3:5678374-5678393 | Msa0099470:intron | 30.0% | |
| TGCATATGAATTACATTTGG+TGG | - | chr1_3:5678646-5678665 | Msa0099470:intron | 30.0% | |
| GCATATGAATTACATTTGGT+GGG | - | chr1_3:5678647-5678666 | Msa0099470:intron | 30.0% | |
| CGTACTATATTACACTTCAT+AGG | + | chr1_3:5678744-5678763 | None:intergenic | 30.0% | |
| ATGAAGTGTAATATAGTACG+CGG | - | chr1_3:5678744-5678763 | Msa0099470:CDS | 30.0% | |
| TAACCTTAATACATCGTACA+TGG | + | chr1_3:5678809-5678828 | None:intergenic | 30.0% | |
| AACATAAGCAACAACAAGTA+CGG | + | chr1_3:5679158-5679177 | None:intergenic | 30.0% | |
| ! | TATTTTATCATAAGATGGGG+TGG | + | chr1_3:5679183-5679202 | None:intergenic | 30.0% |
| !!! | ATTGAGTTACTTATTTTGGC+GGG | - | chr1_3:5679468-5679487 | Msa0099470:intron | 30.0% |
| !! | TAGTAGCTTGTCTGTTATTT+TGG | - | chr1_3:5679686-5679705 | Msa0099470:intron | 30.0% |
| GCTTATATTCATCATTCAAG+AGG | + | chr1_3:5679720-5679739 | None:intergenic | 30.0% | |
| GGTTTCCAAGAAAATAGATA+AGG | + | chr1_3:5679757-5679776 | None:intergenic | 30.0% | |
| ACAATCAACAATTTCAACTG+TGG | + | chr1_3:5679836-5679855 | None:intergenic | 30.0% | |
| AAGGAAAATCTTTGCCTTTA+TGG | - | chr1_3:5679903-5679922 | Msa0099470:CDS | 30.0% | |
| !! | CTTTCTGTGGCTTTTTATTT+CGG | - | chr1_3:5680077-5680096 | Msa0099470:intron | 30.0% |
| ACTAAAATGCAAAGGATGAA+AGG | + | chr1_3:5680303-5680322 | None:intergenic | 30.0% | |
| ! | GATTATCGACTAAAATGCAA+AGG | + | chr1_3:5680311-5680330 | None:intergenic | 30.0% |
| TAGTGAAAAACTAACAGTAC+TGG | + | chr1_3:5680391-5680410 | None:intergenic | 30.0% | |
| !! | GCATTACTTTTGTCAAATAG+CGG | - | chr1_3:5680430-5680449 | Msa0099470:intron | 30.0% |
| GCTAAAGAGTTATAGCATAA+TGG | - | chr1_3:5680454-5680473 | Msa0099470:intron | 30.0% | |
| !! | TATCTGCTATTTCACACATT+GGG | - | chr1_3:5680511-5680530 | Msa0099470:intron | 30.0% |
| CTTACTTGAGTGTATGATAT+TGG | - | chr1_3:5680745-5680764 | Msa0099470:intron | 30.0% | |
| GTAACAACTTCAAAGATTGT+TGG | + | chr1_3:5681048-5681067 | None:intergenic | 30.0% | |
| !! | ACAATCTTTGAAGTTGTTAC+AGG | - | chr1_3:5681048-5681067 | Msa0099470:intron | 30.0% |
| !! | CAATCTTTGAAGTTGTTACA+GGG | - | chr1_3:5681049-5681068 | Msa0099470:intron | 30.0% |
| !! | CTTAGAGTTTGATTTGGATT+TGG | + | chr1_3:5681127-5681146 | None:intergenic | 30.0% |
| CAAATCCAAATCAAACTCTA+AGG | - | chr1_3:5681125-5681144 | Msa0099470:intron | 30.0% | |
| TAAACATATATCCCTCTCTA+TGG | - | chr1_3:5681513-5681532 | Msa0099470:intron | 30.0% | |
| GATTAAATACCATACCAATC+AGG | + | chr1_3:5681577-5681596 | None:intergenic | 30.0% | |
| ATATGTGAGAAATGGTTTCA+CGG | - | chr1_3:5681823-5681842 | Msa0099470:intron | 30.0% | |
| ATATAGGAGTTTGTGTAGAT+TGG | - | chr1_3:5681942-5681961 | Msa0099470:intron | 30.0% | |
| CTTTCTCAACAACAAAGAGA+AGG | - | chr1_3:5677664-5677683 | Msa0099470:three_prime_UTR | 35.0% | |
| AAGATAAGAGAGTGAGATTG+TGG | + | chr1_3:5677712-5677731 | None:intergenic | 35.0% | |
| GAAGTCTTTCGAGATTTCAA+AGG | - | chr1_3:5677814-5677833 | Msa0099470:three_prime_UTR | 35.0% | |
| GTGTTGCATGTGTAACTATA+AGG | - | chr1_3:5678309-5678328 | Msa0099470:intron | 35.0% | |
| ATTGAGATGCTTCCCATAAA+TGG | + | chr1_3:5678457-5678476 | None:intergenic | 35.0% | |
| !! | TTTATGGGAAGCATCTCAAT+TGG | - | chr1_3:5678457-5678476 | Msa0099470:intron | 35.0% |
| GTGAGTCCAAAATGTTTGAT+TGG | - | chr1_3:5678531-5678550 | Msa0099470:intron | 35.0% | |
| TTAATGCCCAAAATACGTTG+CGG | - | chr1_3:5678775-5678794 | Msa0099470:CDS | 35.0% | |
| CATCCATGTACGATGTATTA+AGG | - | chr1_3:5678803-5678822 | Msa0099470:CDS | 35.0% | |
| TTACATCCCAAAAAGAGAAG+AGG | - | chr1_3:5678883-5678902 | Msa0099470:intron | 35.0% | |
| TACATCCCAAAAAGAGAAGA+GGG | - | chr1_3:5678884-5678903 | Msa0099470:intron | 35.0% | |
| ! | AATAGCCCTCTTCTCTTTTT+GGG | + | chr1_3:5678892-5678911 | None:intergenic | 35.0% |
| ! | AAATAGCCCTCTTCTCTTTT+TGG | + | chr1_3:5678893-5678912 | None:intergenic | 35.0% |
| AAAAGAGAAGAGGGCTATTT+AGG | - | chr1_3:5678893-5678912 | Msa0099470:intron | 35.0% | |
| TGTTCAGGAAGTTCATTTCT+TGG | - | chr1_3:5678955-5678974 | Msa0099470:intron | 35.0% | |
| GATCTGAATCTGATGTAGTA+TGG | - | chr1_3:5679007-5679026 | Msa0099470:intron | 35.0% | |
| GGTTGAACCTAAATATGATG+CGG | + | chr1_3:5679136-5679155 | None:intergenic | 35.0% | |
| ACATAAGCAACAACAAGTAC+GGG | + | chr1_3:5679157-5679176 | None:intergenic | 35.0% | |
| AGATAGGCTTCAATAGATAG+TGG | - | chr1_3:5679430-5679449 | Msa0099470:intron | 35.0% | |
| !! | TCAATAGATAGTGGATGTGA+TGG | - | chr1_3:5679439-5679458 | Msa0099470:intron | 35.0% |
| TCACCCTTGAATATTGATAC+TGG | - | chr1_3:5679543-5679562 | Msa0099470:intron | 35.0% | |
| TTGATACTGGATTTAGTCTG+AGG | - | chr1_3:5679556-5679575 | Msa0099470:intron | 35.0% | |
| !! | GTCTGAGGTATCTATTTTCT+TGG | - | chr1_3:5679571-5679590 | Msa0099470:intron | 35.0% |
| ! | TGCTGCCTTATCTATTTTCT+TGG | - | chr1_3:5679749-5679768 | Msa0099470:CDS | 35.0% |
| CTGTGGAACTTAAGCATATT+AGG | + | chr1_3:5679819-5679838 | None:intergenic | 35.0% | |
| GGTATTAACTTTGCTAGAGA+TGG | - | chr1_3:5679999-5680018 | Msa0099470:intron | 35.0% | |
| TAGAGATGGAATGCAAGAAA+AGG | - | chr1_3:5680013-5680032 | Msa0099470:intron | 35.0% | |
| ATGGAATGCAAGAAAAGGAT+TGG | - | chr1_3:5680018-5680037 | Msa0099470:intron | 35.0% | |
| !! | AGAAAAGGATTGGCTATCTT+TGG | - | chr1_3:5680028-5680047 | Msa0099470:intron | 35.0% |
| !!! | TTTTATTTCGGTGCTAGGTT+TGG | - | chr1_3:5680089-5680108 | Msa0099470:intron | 35.0% |
| !! | CTATCTGCTATTTCACACAT+TGG | - | chr1_3:5680510-5680529 | Msa0099470:intron | 35.0% |
| !! | ATCTGCTATTTCACACATTG+GGG | - | chr1_3:5680512-5680531 | Msa0099470:intron | 35.0% |
| ! | TTTCACACATTGGGGATTTT+CGG | - | chr1_3:5680520-5680539 | Msa0099470:intron | 35.0% |
| GAAAGCAAACCATCAATGAA+TGG | + | chr1_3:5680931-5680950 | None:intergenic | 35.0% | |
| TGTACTTATCATCTCTTTGC+AGG | - | chr1_3:5680992-5681011 | Msa0099470:intron | 35.0% | |
| GCTTACCTTAGAGTTTGATT+TGG | + | chr1_3:5681133-5681152 | None:intergenic | 35.0% | |
| CTCTTAGTATCAGTGAATAG+TGG | + | chr1_3:5681176-5681195 | None:intergenic | 35.0% | |
| CACTATTCACTGATACTAAG+AGG | - | chr1_3:5681174-5681193 | Msa0099470:intron | 35.0% | |
| TGATACTAAGAGGACTTTGA+GGG | - | chr1_3:5681184-5681203 | Msa0099470:intron | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | + | chr1_3:5681446-5681465 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | + | chr1_3:5681452-5681471 | None:intergenic | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | - | chr1_3:5681598-5681617 | Msa0099470:intron | 35.0% |
| ! | GCCAAAGTTTTCAAAACCAA+TGG | - | chr1_3:5681651-5681670 | Msa0099470:intron | 35.0% |
| !!! | GCCATTGGTTTTGAAAACTT+TGG | + | chr1_3:5681655-5681674 | None:intergenic | 35.0% |
| ! | GTTTTCAAAACCAATGGCAA+TGG | - | chr1_3:5681657-5681676 | Msa0099470:intron | 35.0% |
| AAAATGCGTGAAGATTACTC+CGG | - | chr1_3:5681846-5681865 | Msa0099470:CDS | 35.0% | |
| TCCTATATCCATTGCTTCAA+GGG | + | chr1_3:5681930-5681949 | None:intergenic | 35.0% | |
| AATTCGGAACAATTCGATAG+CGG | + | chr1_3:5682072-5682091 | None:intergenic | 35.0% | |
| CTATCGAATTGTTCCGAATT+AGG | - | chr1_3:5682072-5682091 | Msa0099470:exon | 35.0% | |
| TTGTGTTGAGAGAGAGAGAA+TGG | + | chr1_3:5677627-5677646 | None:intergenic | 40.0% | |
| TAAGAGAGTGAGATTGTGGA+GGG | + | chr1_3:5677708-5677727 | None:intergenic | 40.0% | |
| ATAAGAGAGTGAGATTGTGG+AGG | + | chr1_3:5677709-5677728 | None:intergenic | 40.0% | |
| CTTCACAACAACAACAACCA+TGG | - | chr1_3:5677753-5677772 | Msa0099470:three_prime_UTR | 40.0% | |
| TTAATTAAAGCCCTCACCAC+CGG | - | chr1_3:5677850-5677869 | Msa0099470:three_prime_UTR | 40.0% | |
| AAAAAAGAGAGAAGACCGAC+CGG | + | chr1_3:5677872-5677891 | None:intergenic | 40.0% | |
| TGGTAGAATACATCGACATC+TGG | + | chr1_3:5677974-5677993 | None:intergenic | 40.0% | |
| TCTGATGTAGTATGGACTTC+TGG | - | chr1_3:5679015-5679034 | Msa0099470:intron | 40.0% | |
| CTGATGTAGTATGGACTTCT+GGG | - | chr1_3:5679016-5679035 | Msa0099470:intron | 40.0% | |
| !! | TTGTTGTATGATGGACCCAA+AGG | - | chr1_3:5679105-5679124 | Msa0099470:intron | 40.0% |
| TATGATGCGGCATAACCTTT+GGG | + | chr1_3:5679123-5679142 | None:intergenic | 40.0% | |
| ATATGATGCGGCATAACCTT+TGG | + | chr1_3:5679124-5679143 | None:intergenic | 40.0% | |
| GGTTATGCCGCATCATATTT+AGG | - | chr1_3:5679126-5679145 | Msa0099470:intron | 40.0% | |
| ! | CTGGAAGTATGCAAGCATAT+CGG | + | chr1_3:5679316-5679335 | None:intergenic | 40.0% |
| CATTTACGGCTTCAGAAGAT+AGG | - | chr1_3:5679414-5679433 | Msa0099470:intron | 40.0% | |
| !!! | AATTTTGGCTACGATGCTTC+AGG | - | chr1_3:5679625-5679644 | Msa0099470:intron | 40.0% |
| TAACAGACAAGCTACTATCG+TGG | + | chr1_3:5679683-5679702 | None:intergenic | 40.0% | |
| GAAAATAGATAAGGCAGCAC+AGG | + | chr1_3:5679748-5679767 | None:intergenic | 40.0% | |
| ! | AAGCATATTAGGTGCTGCAT+TGG | + | chr1_3:5679808-5679827 | None:intergenic | 40.0% |
| ! | CAAGCTTTGTGATACAGAGA+AGG | - | chr1_3:5679884-5679903 | Msa0099470:CDS | 40.0% |
| GCAAAGTTAATACCCAATGC+TGG | + | chr1_3:5679993-5680012 | None:intergenic | 40.0% | |
| !!! | TGGCTTTTTATTTCGGTGCT+AGG | - | chr1_3:5680084-5680103 | Msa0099470:intron | 40.0% |
| TGCTAGGTTTGGATTTGACA+AGG | - | chr1_3:5680100-5680119 | Msa0099470:intron | 40.0% | |
| TTGGATTTGACAAGGCTGAT+AGG | - | chr1_3:5680108-5680127 | Msa0099470:intron | 40.0% | |
| TTTACCCTTTCACAAAGCTG+CGG | - | chr1_3:5680143-5680162 | Msa0099470:intron | 40.0% | |
| !!! | GATAGTGTTGCTGTTTTCAG+AGG | + | chr1_3:5680495-5680514 | None:intergenic | 40.0% |
| TCAAAGGAAAACTAGTGGAG+AGG | - | chr1_3:5680592-5680611 | Msa0099470:intron | 40.0% | |
| !! | CAACAAACTTTTGAGAGGCA+GGG | + | chr1_3:5680882-5680901 | None:intergenic | 40.0% |
| ! | ACTGCCAACAAACTTTTGAG+AGG | + | chr1_3:5680887-5680906 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | - | chr1_3:5680937-5680956 | Msa0099470:intron | 40.0% |
| ! | TTTGAAGTTGTTACAGGGTC+TGG | - | chr1_3:5681054-5681073 | Msa0099470:intron | 40.0% |
| CTGATACTAAGAGGACTTTG+AGG | - | chr1_3:5681183-5681202 | Msa0099470:intron | 40.0% | |
| ! | TAAGAGGACTTTGAGGGATT+TGG | - | chr1_3:5681190-5681209 | Msa0099470:intron | 40.0% |
| GATTGAAAGGTGATCTCAGA+CGG | + | chr1_3:5681256-5681275 | None:intergenic | 40.0% | |
| AAATGACTCACGCTATGACT+TGG | - | chr1_3:5681282-5681301 | Msa0099470:intron | 40.0% | |
| ! | TAGTCTAGTTTGCATGACCA+TGG | - | chr1_3:5681390-5681409 | Msa0099470:intron | 40.0% |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | - | chr1_3:5681438-5681457 | Msa0099470:intron | 40.0% |
| AACTGTGTCTGTTTCCTGAT+TGG | - | chr1_3:5681560-5681579 | Msa0099470:intron | 40.0% | |
| TGTCTGTTTCCTGATTGGTA+TGG | - | chr1_3:5681565-5681584 | Msa0099470:intron | 40.0% | |
| !!! | GGTTTTGAAAACTTTGGCTG+AGG | + | chr1_3:5681649-5681668 | None:intergenic | 40.0% |
| CTCCTATATCCATTGCTTCA+AGG | + | chr1_3:5681931-5681950 | None:intergenic | 40.0% | |
| ! | CTTGTTGTATGCACAACTCT+AGG | + | chr1_3:5682219-5682238 | None:intergenic | 40.0% |
| ACAACAACCATGGACGTTGT+AGG | - | chr1_3:5677763-5677782 | Msa0099470:three_prime_UTR | 45.0% | |
| AGACTTCTTCGACAGTACGA+GGG | + | chr1_3:5677801-5677820 | None:intergenic | 45.0% | |
| AAGACTTCTTCGACAGTACG+AGG | + | chr1_3:5677802-5677821 | None:intergenic | 45.0% | |
| ! | GCAATGCCGCAACGTATTTT+GGG | + | chr1_3:5678784-5678803 | None:intergenic | 45.0% |
| ! | TGCAATGCCGCAACGTATTT+TGG | + | chr1_3:5678785-5678804 | None:intergenic | 45.0% |
| TAAATCTTATGCAGCAGCGC+TGG | + | chr1_3:5679335-5679354 | None:intergenic | 45.0% | |
| !! | TTAATACCCAATGCTGGCTC+TGG | + | chr1_3:5679987-5680006 | None:intergenic | 45.0% |
| TTGCAGTACACAGTGATGCT+TGG | - | chr1_3:5680051-5680070 | Msa0099470:intron | 45.0% | |
| ! | TGATGCTTGGTTGCTTTCTG+TGG | - | chr1_3:5680064-5680083 | Msa0099470:intron | 45.0% |
| ! | GCAGCTTTGTGAAAGGGTAA+AGG | + | chr1_3:5680144-5680163 | None:intergenic | 45.0% |
| ! | AAAGCCGCAGCTTTGTGAAA+GGG | + | chr1_3:5680150-5680169 | None:intergenic | 45.0% |
| ! | TAAAGCCGCAGCTTTGTGAA+AGG | + | chr1_3:5680151-5680170 | None:intergenic | 45.0% |
| !! | CCAACAAACTTTTGAGAGGC+AGG | + | chr1_3:5680883-5680902 | None:intergenic | 45.0% |
| CCTGCCTCTCAAAAGTTTGT+TGG | - | chr1_3:5680880-5680899 | Msa0099470:intron | 45.0% | |
| AAGGATTCACACATGTGCCA+TGG | + | chr1_3:5681410-5681429 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+AGG | - | chr1_3:5681416-5681435 | Msa0099470:intron | 45.0% | |
| ! | ACTTTCTAGCGCCATAGAGA+GGG | + | chr1_3:5681527-5681546 | None:intergenic | 45.0% |
| ATCTGCATTGCCATTGCCAT+TGG | + | chr1_3:5681670-5681689 | None:intergenic | 45.0% | |
| GATGAGGTTGAGGATGAAGA+TGG | - | chr1_3:5681700-5681719 | Msa0099470:intron | 45.0% | |
| GTTGAGGATGAAGATGGTGT+AGG | - | chr1_3:5681706-5681725 | Msa0099470:intron | 45.0% | |
| GAGGAAGATGAGGAAGAACA+CGG | - | chr1_3:5681736-5681755 | Msa0099470:intron | 45.0% | |
| AACACGGAGAGACTTTGTGT+GGG | - | chr1_3:5681752-5681771 | Msa0099470:intron | 45.0% | |
| GCTGCGACATATGTGAGAAA+TGG | - | chr1_3:5681815-5681834 | Msa0099470:intron | 45.0% | |
| GCCCTTGAAGCAATGGATAT+AGG | - | chr1_3:5681926-5681945 | Msa0099470:intron | 45.0% | |
| !! | TATGCACAACTCTAGGACTC+GGG | + | chr1_3:5682212-5682231 | None:intergenic | 45.0% |
| !! | GTATGCACAACTCTAGGACT+CGG | + | chr1_3:5682213-5682232 | None:intergenic | 45.0% |
| !!! | AATTTTTTTTACAAAAAAAT+AGG | + | chr1_3:5677918-5677937 | None:intergenic | 5.0% |
| TCGACAGTACGAGGGTTGTA+CGG | + | chr1_3:5677793-5677812 | None:intergenic | 50.0% | |
| TTCTACCAGCAGTGTGATCC+CGG | - | chr1_3:5677986-5678005 | Msa0099470:CDS | 50.0% | |
| TATTACCGGGATCACACTGC+TGG | + | chr1_3:5677994-5678013 | None:intergenic | 50.0% | |
| GGTGGGTCATAACAAGAAGC+TGG | - | chr1_3:5678664-5678683 | Msa0099470:intron | 50.0% | |
| TGCTGTTGCTGCGTTTGTCA+TGG | - | chr1_3:5679210-5679229 | Msa0099470:intron | 50.0% | |
| GCTCGCTCGGAAATCCATAA+AGG | + | chr1_3:5679920-5679939 | None:intergenic | 50.0% | |
| GCGGCTTTACTCTGCTCAAT+AGG | - | chr1_3:5680162-5680181 | Msa0099470:intron | 50.0% | |
| ! | ATTGGGGATTTTCGGCGTTC+TGG | - | chr1_3:5680528-5680547 | Msa0099470:intron | 50.0% |
| AAGTTGTTACAGGGTCTGGC+AGG | - | chr1_3:5681058-5681077 | Msa0099470:intron | 50.0% | |
| GTCTGGCAGGAAACAAGGAA+AGG | - | chr1_3:5681071-5681090 | Msa0099470:intron | 50.0% | |
| GATTTGGATTCCCTGCAGTC+TGG | - | chr1_3:5681206-5681225 | Msa0099470:intron | 50.0% | |
| CCATGGATATCCAGACTGCA+GGG | + | chr1_3:5681219-5681238 | None:intergenic | 50.0% | |
| ACCATGGATATCCAGACTGC+AGG | + | chr1_3:5681220-5681239 | None:intergenic | 50.0% | |
| ! | AGAAAGTGTGTCGTCTCGTC+TGG | - | chr1_3:5681329-5681348 | Msa0099470:intron | 50.0% |
| ATTCGGATCTCCTGCAGCAA+AGG | + | chr1_3:5681429-5681448 | None:intergenic | 50.0% | |
| ! | GACTTTCTAGCGCCATAGAG+AGG | + | chr1_3:5681528-5681547 | None:intergenic | 50.0% |
| GGCAATGCAGATGCAGTCAA+AGG | - | chr1_3:5681678-5681697 | Msa0099470:intron | 50.0% | |
| GCAGATGCAGTCAAAGGATG+AGG | - | chr1_3:5681684-5681703 | Msa0099470:intron | 50.0% | |
| GCAGTCAAAGGATGAGGTTG+AGG | - | chr1_3:5681690-5681709 | Msa0099470:intron | 50.0% | |
| GGATGAAGATGGTGTAGGTG+TGG | - | chr1_3:5681711-5681730 | Msa0099470:intron | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | - | chr1_3:5681751-5681770 | Msa0099470:intron | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | - | chr1_3:5681753-5681772 | Msa0099470:intron | 50.0% | |
| CGTGAAGATTACTCCGGCAA+GGG | - | chr1_3:5681852-5681871 | Msa0099470:CDS | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | + | chr1_3:5681868-5681887 | None:intergenic | 50.0% | |
| TTAAAGCCCTCACCACCGGT+CGG | - | chr1_3:5677854-5677873 | Msa0099470:three_prime_UTR | 55.0% | |
| AAAGAGAGAAGACCGACCGG+TGG | + | chr1_3:5677869-5677888 | None:intergenic | 55.0% | |
| ATGGATTTCCGAGCGAGCAG+TGG | - | chr1_3:5679922-5679941 | Msa0099470:CDS | 55.0% | |
| TGGATTTCCGAGCGAGCAGT+GGG | - | chr1_3:5679923-5679942 | Msa0099470:CDS | 55.0% | |
| !! | AATGCTGGCTCTGGAAGCTC+AGG | + | chr1_3:5679978-5679997 | None:intergenic | 55.0% |
| TGAGCTTCCAGAGCCAGCAT+TGG | - | chr1_3:5679977-5679996 | Msa0099470:intron | 55.0% | |
| GAGCTTCCAGAGCCAGCATT+GGG | - | chr1_3:5679978-5679997 | Msa0099470:intron | 55.0% | |
| GTCGTAGACACGTGTGCAGT+TGG | - | chr1_3:5680623-5680642 | Msa0099470:intron | 55.0% | |
| ACAGGGTCTGGCAGGAAACA+AGG | - | chr1_3:5681066-5681085 | Msa0099470:intron | 55.0% | |
| CCCTGCAGTCTGGATATCCA+TGG | - | chr1_3:5681216-5681235 | Msa0099470:intron | 55.0% | |
| CGGTGCAGATTGCTTGACCA+TGG | + | chr1_3:5681236-5681255 | None:intergenic | 55.0% | |
| AGATGGTGTAGGTGTGGACG+AGG | - | chr1_3:5681717-5681736 | Msa0099470:intron | 55.0% | |
| AGGTGTGGACGAGGAAGATG+AGG | - | chr1_3:5681726-5681745 | Msa0099470:intron | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | - | chr1_3:5681760-5681779 | Msa0099470:intron | 55.0% | |
| GCTATGCAGCTGACGAGTTC+TGG | - | chr1_3:5681788-5681807 | Msa0099470:intron | 55.0% | |
| GCGTGAAGATTACTCCGGCA+AGG | - | chr1_3:5681851-5681870 | Msa0099470:CDS | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | + | chr1_3:5681904-5681923 | None:intergenic | 55.0% | |
| AGAGCTCGCCCTTGAAGCAA+TGG | - | chr1_3:5681919-5681938 | Msa0099470:intron | 55.0% | |
| ! | CGGAGCACCTACAACGTCCA+TGG | + | chr1_3:5677773-5677792 | None:intergenic | 60.0% |
| AGAAGACCGACCGGTGGTGA+GGG | + | chr1_3:5677863-5677882 | None:intergenic | 60.0% | |
| ATTTCCGAGCGAGCAGTGGG+AGG | - | chr1_3:5679926-5679945 | Msa0099470:CDS | 60.0% | |
| TTCACCTCCCACTGCTCGCT+CGG | + | chr1_3:5679933-5679952 | None:intergenic | 60.0% | |
| GGAGGTGAATCTGCCAGCTG+AGG | - | chr1_3:5679944-5679963 | Msa0099470:intron | 60.0% | |
| !! | CAACTCTAGGACTCGGGTGG+TGG | + | chr1_3:5682206-5682225 | None:intergenic | 60.0% |
| !! | GCACAACTCTAGGACTCGGG+TGG | + | chr1_3:5682209-5682228 | None:intergenic | 60.0% |
| GAGAAGACCGACCGGTGGTG+AGG | + | chr1_3:5677864-5677883 | None:intergenic | 65.0% | |
| TCAGGCGGCACTTCCTCAGC+TGG | + | chr1_3:5679960-5679979 | None:intergenic | 65.0% | |
| !! | GCTGGCTCTGGAAGCTCAGG+CGG | + | chr1_3:5679975-5679994 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5677607 | 5682244 | 5677607 | ID=Msa0099470;Name=Msa0099470 |
| chr1_3 | mRNA | 5677607 | 5682244 | 5677607 | ID=Msa0099470-mRNA-1;Parent=Msa0099470;Name=Msa0099470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=165|1|1|1|1|1|5|311|264 |
| chr1_3 | exon | 5677607 | 5678217 | 5677607 | ID=Msa0099470-mRNA-1:exon:2154;Parent=Msa0099470-mRNA-1 |
| chr1_3 | exon | 5678705 | 5678837 | 5678705 | ID=Msa0099470-mRNA-1:exon:2153;Parent=Msa0099470-mRNA-1 |
| chr1_3 | exon | 5679722 | 5679950 | 5679722 | ID=Msa0099470-mRNA-1:exon:2152;Parent=Msa0099470-mRNA-1 |
| chr1_3 | exon | 5681844 | 5681876 | 5681844 | ID=Msa0099470-mRNA-1:exon:2151;Parent=Msa0099470-mRNA-1 |
| chr1_3 | exon | 5681980 | 5682244 | 5681980 | ID=Msa0099470-mRNA-1:exon:2150;Parent=Msa0099470-mRNA-1 |
| chr1_3 | five_prime_UTR | 5682080 | 5682244 | 5682080 | ID=Msa0099470-mRNA-1:five_prime_utr;Parent=Msa0099470-mRNA-1 |
| chr1_3 | CDS | 5681980 | 5682079 | 5681980 | ID=Msa0099470-mRNA-1:cds;Parent=Msa0099470-mRNA-1 |
| chr1_3 | CDS | 5681844 | 5681876 | 5681844 | ID=Msa0099470-mRNA-1:cds;Parent=Msa0099470-mRNA-1 |
| chr1_3 | CDS | 5679722 | 5679950 | 5679722 | ID=Msa0099470-mRNA-1:cds;Parent=Msa0099470-mRNA-1 |
| chr1_3 | CDS | 5678705 | 5678837 | 5678705 | ID=Msa0099470-mRNA-1:cds;Parent=Msa0099470-mRNA-1 |
| chr1_3 | CDS | 5677918 | 5678217 | 5677918 | ID=Msa0099470-mRNA-1:cds;Parent=Msa0099470-mRNA-1 |
| chr1_3 | three_prime_UTR | 5677607 | 5677917 | 5677607 | ID=Msa0099470-mRNA-1:three_prime_utr;Parent=Msa0099470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
