Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099590 | XP_013465876.1 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099590 | sp|Q5XEM9|ALFL5_ARATH | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 5.97e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099590 | A0A072VES1 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0099590 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028800 | Msa0099590 | 0.804893 | 1.736303e-49 | -8.615850e-47 |
| Msa0099470 | Msa0099590 | 0.900479 | 7.031457e-78 | -8.615850e-47 |
| Msa0099590 | Msa0148200 | 0.953658 | 1.686142e-111 | -8.615850e-47 |
| Msa0099590 | Msa0791630 | 0.808162 | 3.545675e-50 | -8.615850e-47 |
| Msa0099590 | Msa1043550 | 0.985676 | 2.588408e-164 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099590 | MtrunA17_Chr1g0150821 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Msa0099590 | MtrunA17_Chr8g0343441 | 78.378 | 259 | 45 | 3 | 8 | 264 | 7 | 256 | 1.90e-130 | 369 |
| Msa0099590 | MtrunA17_Chr2g0300241 | 74.809 | 262 | 49 | 3 | 5 | 264 | 7 | 253 | 3.98e-125 | 356 |
| Msa0099590 | MtrunA17_Chr4g0076771 | 70.588 | 255 | 64 | 3 | 10 | 263 | 10 | 254 | 2.95e-113 | 326 |
| Msa0099590 | MtrunA17_Chr2g0329821 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 5.75e-111 | 320 |
| Msa0099590 | MtrunA17_Chr4g0006381 | 62.500 | 256 | 77 | 4 | 9 | 264 | 6 | 242 | 4.22e-94 | 277 |
| Msa0099590 | MtrunA17_Chr7g0242511 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 1.67e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099590 | AT5G20510.1 | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 6.07e-124 | 353 |
| Msa0099590 | AT3G42790.1 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 1.08e-122 | 350 |
| Msa0099590 | AT2G02470.1 | 70.196 | 255 | 69 | 3 | 10 | 264 | 9 | 256 | 9.23e-111 | 320 |
| Msa0099590 | AT2G02470.2 | 67.578 | 256 | 65 | 3 | 10 | 264 | 9 | 247 | 2.32e-109 | 316 |
| Msa0099590 | AT5G26210.1 | 78.077 | 260 | 49 | 1 | 4 | 263 | 3 | 254 | 2.14e-108 | 314 |
| Msa0099590 | AT1G14510.1 | 67.063 | 252 | 71 | 2 | 10 | 261 | 9 | 248 | 6.38e-107 | 310 |
| Msa0099590 | AT5G20510.2 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.27e-98 | 286 |
| Msa0099590 | AT5G05610.2 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.38e-97 | 286 |
| Msa0099590 | AT5G05610.1 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.38e-97 | 286 |
| Msa0099590 | AT3G11200.1 | 61.977 | 263 | 82 | 3 | 1 | 263 | 1 | 245 | 1.32e-96 | 283 |
| Msa0099590 | AT5G20510.3 | 77.914 | 163 | 36 | 0 | 6 | 168 | 6 | 168 | 1.47e-82 | 246 |
| Msa0099590 | AT3G11200.2 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.31e-80 | 241 |
| Msa0099590 | AT2G02470.3 | 79.333 | 150 | 30 | 1 | 10 | 159 | 9 | 157 | 3.11e-72 | 222 |
Find 89 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1_3:+5796172 | Msa0099590:CDS |
| CTATCGAATTGTTCCGAATT+AGG | 0.167829 | 1_3:+5798341 | Msa0099590:three_prime_UTR |
| TAAGGTATGTTATATTAATT+AGG | 0.274725 | 1_3:+5798307 | Msa0099590:three_prime_UTR |
| AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1_3:+5796297 | Msa0099590:CDS |
| GCTATGCAGCTGACGAGTTC+TGG | 0.291054 | 1_3:+5798057 | Msa0099590:CDS |
| ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1_3:+5797317 | Msa0099590:CDS |
| CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1_3:-5797393 | None:intergenic |
| ACTAATTTGTTTAGTTGATC+AGG | 0.353424 | 1_3:+5798259 | Msa0099590:three_prime_UTR |
| TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1_3:+5797323 | Msa0099590:CDS |
| TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1_3:-5798134 | None:intergenic |
| GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1_3:-5797399 | None:intergenic |
| CTGACATAAATATCCTAATT+CGG | 0.385685 | 1_3:-5798354 | None:intergenic |
| GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1_3:-5797314 | None:intergenic |
| CTCCTATATCCATTGCTTCA+AGG | 0.401682 | 1_3:-5798197 | None:intergenic |
| CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1_3:+5797394 | Msa0099590:CDS |
| AAGATAAGAGAGTGAGATTG+TGG | 0.422672 | 1_3:-5793976 | None:intergenic |
| TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1_3:-5796253 | None:intergenic |
| TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1_3:+5796377 | Msa0099590:CDS |
| TTATAGTATGTAACTGTACT+TGG | 0.436876 | 1_3:+5798419 | Msa0099590:three_prime_UTR |
| GCTCGCTCGGAAATCCATAA+AGG | 0.438097 | 1_3:-5796186 | None:intergenic |
| GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1_3:+5796268 | Msa0099590:CDS |
| GTTACATACTATAAAACTTA+AGG | 0.440343 | 1_3:-5798410 | None:intergenic |
| TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1_3:-5796226 | None:intergenic |
| AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1_3:-5796244 | None:intergenic |
| ATCTGCATTGCCATTGCCAT+TGG | 0.459684 | 1_3:-5797936 | None:intergenic |
| GCCCTTGAAGCAATGGATAT+AGG | 0.461748 | 1_3:+5798195 | Msa0099590:exon |
| GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1_3:-5798170 | None:intergenic |
| TCCTATATCCATTGCTTCAA+GGG | 0.467689 | 1_3:-5798196 | None:intergenic |
| TTCACCTCCCACTGCTCGCT+CGG | 0.467752 | 1_3:-5796199 | None:intergenic |
| CAACTCTAGGACTCGGGTGG+TGG | 0.482465 | 1_3:-5798472 | None:intergenic |
| ATATAGGAGTTTGTGTAGAT+TGG | 0.482847 | 1_3:+5798211 | Msa0099590:three_prime_UTR |
| CTTGTTGTATGCACAACTCT+AGG | 0.488102 | 1_3:-5798485 | None:intergenic |
| TAAGAGAGTGAGATTGTGGA+GGG | 0.488743 | 1_3:-5793972 | None:intergenic |
| TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1_3:-5794054 | None:intergenic |
| GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1_3:+5798084 | Msa0099590:CDS |
| AATTCGGAACAATTCGATAG+TGG | 0.501907 | 1_3:-5798338 | None:intergenic |
| TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1_3:+5796333 | Msa0099590:CDS |
| TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1_3:+5794247 | Msa0099590:CDS |
| ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1_3:+5794027 | Msa0099590:exon |
| ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1_3:+5796287 | Msa0099590:CDS |
| AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1_3:+5797327 | Msa0099590:CDS |
| AGAAGACCGACCGGTGGTGA+GGG | 0.523124 | 1_3:-5794124 | None:intergenic |
| TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1_3:+5796282 | Msa0099590:CDS |
| GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1_3:+5796247 | Msa0099590:CDS |
| TTAATTAAAGCCCTCACCAC+CGG | 0.530739 | 1_3:+5794114 | Msa0099590:CDS |
| AAGACTTCTTCGACAGTACG+AGG | 0.536014 | 1_3:-5794063 | None:intergenic |
| TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1_3:+5796320 | Msa0099590:CDS |
| GAAGTCTTTCGAGATTTCAA+AGG | 0.539441 | 1_3:+5794078 | Msa0099590:CDS |
| ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1_3:+5797335 | Msa0099590:CDS |
| AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1_3:+5797995 | Msa0099590:CDS |
| AGAGCTCGCCCTTGAAGCAA+TGG | 0.549499 | 1_3:+5798188 | Msa0099590:exon |
| TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1_3:+5796369 | Msa0099590:CDS |
| CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1_3:+5797318 | Msa0099590:CDS |
| CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1_3:-5794034 | None:intergenic |
| GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1_3:-5796259 | None:intergenic |
| GCAGTCAAAGGATGAGGTTG+AGG | 0.565823 | 1_3:+5797959 | Msa0099590:CDS |
| ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1_3:+5798092 | Msa0099590:CDS |
| GCAGATGCAGTCAAAGGATG+AGG | 0.569670 | 1_3:+5797953 | Msa0099590:CDS |
| ATAAGAGAGTGAGATTGTGG+AGG | 0.569849 | 1_3:-5793973 | None:intergenic |
| TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1_3:+5796246 | Msa0099590:CDS |
| TATGCACAACTCTAGGACTC+GGG | 0.572720 | 1_3:-5798478 | None:intergenic |
| GTATGCACAACTCTAGGACT+CGG | 0.573947 | 1_3:-5798479 | None:intergenic |
| CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1_3:+5798121 | Msa0099590:CDS |
| TGGATTTCCGAGCGAGCAGT+GGG | 0.579516 | 1_3:+5796192 | Msa0099590:CDS |
| GGCAATGCAGATGCAGTCAA+AGG | 0.579948 | 1_3:+5797947 | Msa0099590:CDS |
| CTTTCTCAACAACAAAGAGA+AGG | 0.580893 | 1_3:+5793931 | Msa0099590:five_prime_UTR |
| GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1_3:-5796241 | None:intergenic |
| GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1_3:+5798120 | Msa0099590:CDS |
| GAGAAGACCGACCGGTGGTG+AGG | 0.592144 | 1_3:-5794125 | None:intergenic |
| TGAAGTGAAACTGAAAGAAA+CGG | 0.600500 | 1_3:-5794002 | None:intergenic |
| ATGGATTTCCGAGCGAGCAG+TGG | 0.601477 | 1_3:+5796191 | Msa0099590:CDS |
| TATTACCGGGATCACACTGC+TGG | 0.607631 | 1_3:-5794252 | None:intergenic |
| GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1_3:+5798029 | Msa0099590:CDS |
| AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1_3:+5798021 | Msa0099590:CDS |
| GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1_3:+5797980 | Msa0099590:CDS |
| AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1_3:+5797986 | Msa0099590:CDS |
| TTTCTCAACAACAAAGAGAA+GGG | 0.630443 | 1_3:+5793932 | Msa0099590:five_prime_UTR |
| GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1_3:+5798020 | Msa0099590:CDS |
| GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1_3:+5796213 | Msa0099590:CDS |
| AGACTTCTTCGACAGTACGA+GGG | 0.643030 | 1_3:-5794062 | None:intergenic |
| GATGAGGTTGAGGATGAAGA+TGG | 0.646194 | 1_3:+5797969 | Msa0099590:CDS |
| TCACTTCACAACAACAACCA+TGG | 0.647922 | 1_3:+5794017 | Msa0099590:exon |
| GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1_3:+5798005 | Msa0099590:CDS |
| ATTTCCGAGCGAGCAGTGGG+AGG | 0.670558 | 1_3:+5796195 | Msa0099590:CDS |
| GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1_3:+5797975 | Msa0099590:CDS |
| GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1_3:+5797340 | Msa0099590:CDS |
| GCACAACTCTAGGACTCGGG+TGG | 0.694311 | 1_3:-5798475 | None:intergenic |
| ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1_3:+5798022 | Msa0099590:CDS |
| AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1_3:+5798115 | Msa0099590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATTATTTTATCATA+AGG | - | chr1_3:5795460-5795479 | None:intergenic | 10.0% |
| !!! | TTTTCAATTAGTTTTAATTT+TGG | + | chr1_3:5795879-5795898 | Msa0099590:intron | 10.0% |
| !!! | ATTTATAATTTGTTGTATGA+TGG | + | chr1_3:5795365-5795384 | Msa0099590:intron | 15.0% |
| !!! | AAATTATTTTATCATAAGGT+GGG | - | chr1_3:5795456-5795475 | None:intergenic | 15.0% |
| !!! | AAAATTATTTTATCATAAGG+TGG | - | chr1_3:5795457-5795476 | None:intergenic | 15.0% |
| !! | AAAATTGAAATGTTCATTTA+CGG | + | chr1_3:5795669-5795688 | Msa0099590:intron | 15.0% |
| !!! | CAGTTAATTTTAATTTTTTC+AGG | + | chr1_3:5795923-5795942 | Msa0099590:intron | 15.0% |
| !!! | TTGATTGTATTTTGTATTTT+TGG | + | chr1_3:5796117-5796136 | Msa0099590:intron | 15.0% |
| !!! | GACTTTTTTTATTTGAATTT+TGG | + | chr1_3:5796462-5796481 | Msa0099590:intron | 15.0% |
| !!! | TTTTTTATTTGAATTTTGGT+TGG | + | chr1_3:5796466-5796485 | Msa0099590:intron | 15.0% |
| !!! | AAATTATGTGATGTTTTATT+TGG | + | chr1_3:5796607-5796626 | Msa0099590:intron | 15.0% |
| !!! | AATTATGTGATGTTTTATTT+GGG | + | chr1_3:5796608-5796627 | Msa0099590:intron | 15.0% |
| !! | TAAGGTATGTTATATTAATT+AGG | + | chr1_3:5798307-5798326 | Msa0099590:three_prime_UTR | 15.0% |
| !! | TTTACGAAATAGAATATTAC+CGG | - | chr1_3:5794269-5794288 | None:intergenic | 20.0% |
| !! | GTAAAAGAATCTATAATAGT+TGG | + | chr1_3:5794854-5794873 | Msa0099590:intron | 20.0% |
| !! | ATTTGCATATGAATTACATT+TGG | + | chr1_3:5794912-5794931 | Msa0099590:intron | 20.0% |
| !!! | AATTATTTTATCATAAGGTG+GGG | - | chr1_3:5795455-5795474 | None:intergenic | 20.0% |
| !! | TTTAAACTTGAAGAATCTAA+TGG | - | chr1_3:5795560-5795579 | None:intergenic | 20.0% |
| !! | TTTAGTTAATCCTAATAGAA+AGG | + | chr1_3:5795620-5795639 | Msa0099590:intron | 20.0% |
| !!! | TGAAATTGAGTTACTTATTT+TGG | + | chr1_3:5795733-5795752 | Msa0099590:intron | 20.0% |
| !!! | TGTATGAAGATTTTAACTTA+GGG | + | chr1_3:5795783-5795802 | Msa0099590:intron | 20.0% |
| !! | AAGATAATCACTCTTATAAA+TGG | - | chr1_3:5796637-5796656 | None:intergenic | 20.0% |
| !! | ACAGTGATAAAAAAAATCAA+AGG | + | chr1_3:5796845-5796864 | Msa0099590:intron | 20.0% |
| !!! | TTAGTCTTGCTTTTAATTTA+AGG | + | chr1_3:5798289-5798308 | Msa0099590:three_prime_UTR | 20.0% |
| !! | GTTACATACTATAAAACTTA+AGG | - | chr1_3:5798413-5798432 | None:intergenic | 20.0% |
| ! | ATCTGGAAAGAAAAAAAACA+CGG | - | chr1_3:5794218-5794237 | None:intergenic | 25.0% |
| ! | TTACGAAATAGAATATTACC+GGG | - | chr1_3:5794268-5794287 | None:intergenic | 25.0% |
| ! | ATTAATCACATGCAAAATTG+TGG | - | chr1_3:5794555-5794574 | None:intergenic | 25.0% |
| !! | AATTTTGCATGTGATTAATC+AGG | + | chr1_3:5794556-5794575 | Msa0099590:intron | 25.0% |
| ! | TGTAACTATAAGGGAAAATT+GGG | + | chr1_3:5794588-5794607 | Msa0099590:intron | 25.0% |
| ! | GTGTCTATTATTTACATACA+TGG | + | chr1_3:5794610-5794629 | Msa0099590:intron | 25.0% |
| ! | AATCAAAATGCTACCATTTA+TGG | + | chr1_3:5794710-5794729 | Msa0099590:intron | 25.0% |
| ! | ATCAAAATGCTACCATTTAT+GGG | + | chr1_3:5794711-5794730 | Msa0099590:intron | 25.0% |
| !!! | AAAATTTCTACTGTTTCTGT+TGG | + | chr1_3:5794751-5794770 | Msa0099590:intron | 25.0% |
| !! | TATCAACCAATCAAACATTT+TGG | - | chr1_3:5794809-5794828 | None:intergenic | 25.0% |
| ! | GTACTATATTACACTTCATA+GGG | - | chr1_3:5795012-5795031 | None:intergenic | 25.0% |
| !!! | AGCAAAACTTTATTTTGTTC+AGG | + | chr1_3:5795209-5795228 | Msa0099590:intron | 25.0% |
| !!! | TGAAATTTTTGAGCAAATCA+AGG | - | chr1_3:5795331-5795350 | None:intergenic | 25.0% |
| ! | CTAGATAATTCCTTTCTATT+AGG | - | chr1_3:5795633-5795652 | None:intergenic | 25.0% |
| ! | CTAATAGAAAGGAATTATCT+AGG | + | chr1_3:5795631-5795650 | Msa0099590:intron | 25.0% |
| !!! | AATTGAGTTACTTATTTTGG+CGG | + | chr1_3:5795736-5795755 | Msa0099590:intron | 25.0% |
| !!! | CTGTATGAAGATTTTAACTT+AGG | + | chr1_3:5795782-5795801 | Msa0099590:intron | 25.0% |
| ! | AATCCAGTATCAATATTCAA+GGG | - | chr1_3:5795818-5795837 | None:intergenic | 25.0% |
| ! | AAATCCAGTATCAATATTCA+AGG | - | chr1_3:5795819-5795838 | None:intergenic | 25.0% |
| ! | TTATATTCATCATTCAAGAG+GGG | - | chr1_3:5795987-5796006 | None:intergenic | 25.0% |
| ! | CTTATATTCATCATTCAAGA+GGG | - | chr1_3:5795988-5796007 | None:intergenic | 25.0% |
| !!! | AATATAAAAGTTCTGAAGGT+TGG | - | chr1_3:5796047-5796066 | None:intergenic | 25.0% |
| !! | GAGAAATATAAAAGTTCTGA+AGG | - | chr1_3:5796051-5796070 | None:intergenic | 25.0% |
| ! | AAAAATCAAAGGAAAACTAG+TGG | + | chr1_3:5796856-5796875 | Msa0099590:intron | 25.0% |
| ! | CTAAAAGGAAAGAAACAATA+AGG | - | chr1_3:5797079-5797098 | None:intergenic | 25.0% |
| !! | AAGATACTCGTTTTACTAAA+AGG | - | chr1_3:5797094-5797113 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGCCATTCATTGA+TGG | + | chr1_3:5797188-5797207 | Msa0099590:intron | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | - | chr1_3:5797538-5797557 | None:intergenic | 25.0% |
| ! | GTATGGTATTTAATCAGTTA+AGG | + | chr1_3:5797851-5797870 | Msa0099590:intron | 25.0% |
| !!! | ACTAATTTGTTTAGTTGATC+AGG | + | chr1_3:5798259-5798278 | Msa0099590:three_prime_UTR | 25.0% |
| ! | CTGACATAAATATCCTAATT+CGG | - | chr1_3:5798357-5798376 | None:intergenic | 25.0% |
| ! | TTATAGTATGTAACTGTACT+TGG | + | chr1_3:5798419-5798438 | Msa0099590:three_prime_UTR | 25.0% |
| TTTCTCAACAACAAAGAGAA+GGG | + | chr1_3:5793932-5793951 | Msa0099590:five_prime_UTR | 30.0% | |
| TGAAGTGAAACTGAAAGAAA+CGG | - | chr1_3:5794005-5794024 | None:intergenic | 30.0% | |
| AGAAAAAACAGTTACAGAAG+TGG | + | chr1_3:5794364-5794383 | Msa0099590:intron | 30.0% | |
| GAAAAAACAGTTACAGAAGT+GGG | + | chr1_3:5794365-5794384 | Msa0099590:intron | 30.0% | |
| TCAAACACGTGATAAAAACA+AGG | - | chr1_3:5794453-5794472 | None:intergenic | 30.0% | |
| TCAATTCTAAGTCAAAGTTG+TGG | + | chr1_3:5794481-5794500 | Msa0099590:intron | 30.0% | |
| TGTTGCATGTGTAACTATAA+GGG | + | chr1_3:5794579-5794598 | Msa0099590:intron | 30.0% | |
| GTGTAACTATAAGGGAAAAT+TGG | + | chr1_3:5794587-5794606 | Msa0099590:intron | 30.0% | |
| GCTTGTACTATTGTTCATTT+AGG | + | chr1_3:5794643-5794662 | Msa0099590:intron | 30.0% | |
| TGCATATGAATTACATTTGG+TGG | + | chr1_3:5794915-5794934 | Msa0099590:intron | 30.0% | |
| GCATATGAATTACATTTGGT+GGG | + | chr1_3:5794916-5794935 | Msa0099590:intron | 30.0% | |
| CGTACTATATTACACTTCAT+AGG | - | chr1_3:5795013-5795032 | None:intergenic | 30.0% | |
| ATGAAGTGTAATATAGTACG+CGG | + | chr1_3:5795013-5795032 | Msa0099590:intron | 30.0% | |
| TAACCTTAATACATCGTACA+TGG | - | chr1_3:5795078-5795097 | None:intergenic | 30.0% | |
| AACATAAGCAACAACAAGTA+CGG | - | chr1_3:5795427-5795446 | None:intergenic | 30.0% | |
| !!! | ATTGAGTTACTTATTTTGGC+GGG | + | chr1_3:5795737-5795756 | Msa0099590:intron | 30.0% |
| !! | TAGTAGCTTGTCTGTTATTT+TGG | + | chr1_3:5795955-5795974 | Msa0099590:intron | 30.0% |
| GCTTATATTCATCATTCAAG+AGG | - | chr1_3:5795989-5796008 | None:intergenic | 30.0% | |
| GGTTTCCAAGAAAATAGATA+AGG | - | chr1_3:5796026-5796045 | None:intergenic | 30.0% | |
| ACAATCAACAATTTCAACTG+TGG | - | chr1_3:5796105-5796124 | None:intergenic | 30.0% | |
| AAGGAAAATCTTTGCCTTTA+TGG | + | chr1_3:5796172-5796191 | Msa0099590:CDS | 30.0% | |
| !! | CTTTCTGTGGCTTTTTATTT+CGG | + | chr1_3:5796346-5796365 | Msa0099590:CDS | 30.0% |
| ACTAAAATGCAAAGGATGAA+AGG | - | chr1_3:5796572-5796591 | None:intergenic | 30.0% | |
| ! | GATTATCGACTAAAATGCAA+AGG | - | chr1_3:5796580-5796599 | None:intergenic | 30.0% |
| TAGTGAAAAACTAACAGTAC+TGG | - | chr1_3:5796660-5796679 | None:intergenic | 30.0% | |
| !! | GCATTACTTTTGTCAAATAG+CGG | + | chr1_3:5796699-5796718 | Msa0099590:intron | 30.0% |
| GCTAAAGAGTTATAGCATAA+TGG | + | chr1_3:5796723-5796742 | Msa0099590:intron | 30.0% | |
| !! | TATCTGCTATTTCACACATT+GGG | + | chr1_3:5796780-5796799 | Msa0099590:intron | 30.0% |
| CTTACTTGAGTGTATGATAT+TGG | + | chr1_3:5797014-5797033 | Msa0099590:intron | 30.0% | |
| GTAACAACTTCAAAGATTGT+TGG | - | chr1_3:5797317-5797336 | None:intergenic | 30.0% | |
| !! | ACAATCTTTGAAGTTGTTAC+AGG | + | chr1_3:5797317-5797336 | Msa0099590:CDS | 30.0% |
| !! | CAATCTTTGAAGTTGTTACA+GGG | + | chr1_3:5797318-5797337 | Msa0099590:CDS | 30.0% |
| !! | CTTAGAGTTTGATTTGGATT+TGG | - | chr1_3:5797396-5797415 | None:intergenic | 30.0% |
| CAAATCCAAATCAAACTCTA+AGG | + | chr1_3:5797394-5797413 | Msa0099590:CDS | 30.0% | |
| TAAACATATATCCCTCTCTA+TGG | + | chr1_3:5797782-5797801 | Msa0099590:intron | 30.0% | |
| GATTAAATACCATACCAATC+AGG | - | chr1_3:5797846-5797865 | None:intergenic | 30.0% | |
| ATATGTGAGAAATGGTTTCA+CGG | + | chr1_3:5798092-5798111 | Msa0099590:CDS | 30.0% | |
| ATATAGGAGTTTGTGTAGAT+TGG | + | chr1_3:5798211-5798230 | Msa0099590:three_prime_UTR | 30.0% | |
| CTTTCTCAACAACAAAGAGA+AGG | + | chr1_3:5793931-5793950 | Msa0099590:five_prime_UTR | 35.0% | |
| AAGATAAGAGAGTGAGATTG+TGG | - | chr1_3:5793979-5793998 | None:intergenic | 35.0% | |
| GAAGTCTTTCGAGATTTCAA+AGG | + | chr1_3:5794078-5794097 | Msa0099590:CDS | 35.0% | |
| AAAAAAAAGAGAAGACCGAC+CGG | - | chr1_3:5794136-5794155 | None:intergenic | 35.0% | |
| GTGTTGCATGTGTAACTATA+AGG | + | chr1_3:5794578-5794597 | Msa0099590:intron | 35.0% | |
| ATTGAGATGCTTCCCATAAA+TGG | - | chr1_3:5794726-5794745 | None:intergenic | 35.0% | |
| !! | TTTATGGGAAGCATCTCAAT+TGG | + | chr1_3:5794726-5794745 | Msa0099590:intron | 35.0% |
| GTGAGTCCAAAATGTTTGAT+TGG | + | chr1_3:5794800-5794819 | Msa0099590:intron | 35.0% | |
| TTAATGCCCAAAATACGTTG+CGG | + | chr1_3:5795044-5795063 | Msa0099590:intron | 35.0% | |
| CATCCATGTACGATGTATTA+AGG | + | chr1_3:5795072-5795091 | Msa0099590:intron | 35.0% | |
| TTACATCCCAAAAAGAGAAG+AGG | + | chr1_3:5795152-5795171 | Msa0099590:intron | 35.0% | |
| TACATCCCAAAAAGAGAAGA+GGG | + | chr1_3:5795153-5795172 | Msa0099590:intron | 35.0% | |
| ! | AATAGCCCTCTTCTCTTTTT+GGG | - | chr1_3:5795161-5795180 | None:intergenic | 35.0% |
| ! | AAATAGCCCTCTTCTCTTTT+TGG | - | chr1_3:5795162-5795181 | None:intergenic | 35.0% |
| AAAAGAGAAGAGGGCTATTT+AGG | + | chr1_3:5795162-5795181 | Msa0099590:intron | 35.0% | |
| TGTTCAGGAAGTTCATTTCT+TGG | + | chr1_3:5795224-5795243 | Msa0099590:intron | 35.0% | |
| GATCTGAATCTGATGTAGTA+TGG | + | chr1_3:5795276-5795295 | Msa0099590:intron | 35.0% | |
| GGTTGAACCTAAATATGATG+CGG | - | chr1_3:5795405-5795424 | None:intergenic | 35.0% | |
| ACATAAGCAACAACAAGTAC+GGG | - | chr1_3:5795426-5795445 | None:intergenic | 35.0% | |
| ! | TATTTTATCATAAGGTGGGG+TGG | - | chr1_3:5795452-5795471 | None:intergenic | 35.0% |
| AGATAGGCTTCAATAGATAG+TGG | + | chr1_3:5795699-5795718 | Msa0099590:intron | 35.0% | |
| !! | TCAATAGATAGTGGATGTGA+TGG | + | chr1_3:5795708-5795727 | Msa0099590:intron | 35.0% |
| TCACCCTTGAATATTGATAC+TGG | + | chr1_3:5795812-5795831 | Msa0099590:intron | 35.0% | |
| TTGATACTGGATTTAGTCTG+AGG | + | chr1_3:5795825-5795844 | Msa0099590:intron | 35.0% | |
| !! | GTCTGAGGTATCTATTTTCT+TGG | + | chr1_3:5795840-5795859 | Msa0099590:intron | 35.0% |
| ! | TGCTGCCTTATCTATTTTCT+TGG | + | chr1_3:5796018-5796037 | Msa0099590:intron | 35.0% |
| CTGTGGAACTTAAGCATATT+AGG | - | chr1_3:5796088-5796107 | None:intergenic | 35.0% | |
| GGTATTAACTTTGCTAGAGA+TGG | + | chr1_3:5796268-5796287 | Msa0099590:CDS | 35.0% | |
| TAGAGATGGAATGCAAGAAA+AGG | + | chr1_3:5796282-5796301 | Msa0099590:CDS | 35.0% | |
| ATGGAATGCAAGAAAAGGAT+TGG | + | chr1_3:5796287-5796306 | Msa0099590:CDS | 35.0% | |
| !! | AGAAAAGGATTGGCTATCTT+TGG | + | chr1_3:5796297-5796316 | Msa0099590:CDS | 35.0% |
| !!! | TTTTATTTCGGTGCTAGGTT+TGG | + | chr1_3:5796358-5796377 | Msa0099590:CDS | 35.0% |
| !! | CTATCTGCTATTTCACACAT+TGG | + | chr1_3:5796779-5796798 | Msa0099590:intron | 35.0% |
| !! | ATCTGCTATTTCACACATTG+GGG | + | chr1_3:5796781-5796800 | Msa0099590:intron | 35.0% |
| ! | TTTCACACATTGGGGATTTT+CGG | + | chr1_3:5796789-5796808 | Msa0099590:intron | 35.0% |
| GAAAGCAAACCATCAATGAA+TGG | - | chr1_3:5797200-5797219 | None:intergenic | 35.0% | |
| TGTACTTATCATCTCTTTGC+AGG | + | chr1_3:5797261-5797280 | Msa0099590:intron | 35.0% | |
| GCTTACCTTAGAGTTTGATT+TGG | - | chr1_3:5797402-5797421 | None:intergenic | 35.0% | |
| CTCTTAGTATCAGTGAATAG+TGG | - | chr1_3:5797445-5797464 | None:intergenic | 35.0% | |
| CACTATTCACTGATACTAAG+AGG | + | chr1_3:5797443-5797462 | Msa0099590:intron | 35.0% | |
| TGATACTAAGAGGACTTTGA+GGG | + | chr1_3:5797453-5797472 | Msa0099590:intron | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | - | chr1_3:5797715-5797734 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | - | chr1_3:5797721-5797740 | None:intergenic | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr1_3:5797867-5797886 | Msa0099590:intron | 35.0% |
| ! | GCCAAAGTTTTCAAAACCAA+TGG | + | chr1_3:5797920-5797939 | Msa0099590:CDS | 35.0% |
| !!! | GCCATTGGTTTTGAAAACTT+TGG | - | chr1_3:5797924-5797943 | None:intergenic | 35.0% |
| ! | GTTTTCAAAACCAATGGCAA+TGG | + | chr1_3:5797926-5797945 | Msa0099590:CDS | 35.0% |
| AAAATGCGTGAAGATTACTC+CGG | + | chr1_3:5798115-5798134 | Msa0099590:CDS | 35.0% | |
| TCCTATATCCATTGCTTCAA+GGG | - | chr1_3:5798199-5798218 | None:intergenic | 35.0% | |
| AATTCGGAACAATTCGATAG+TGG | - | chr1_3:5798341-5798360 | None:intergenic | 35.0% | |
| CTATCGAATTGTTCCGAATT+AGG | + | chr1_3:5798341-5798360 | Msa0099590:three_prime_UTR | 35.0% | |
| TAAGAGAGTGAGATTGTGGA+GGG | - | chr1_3:5793975-5793994 | None:intergenic | 40.0% | |
| ATAAGAGAGTGAGATTGTGG+AGG | - | chr1_3:5793976-5793995 | None:intergenic | 40.0% | |
| TCACTTCACAACAACAACCA+TGG | + | chr1_3:5794017-5794036 | Msa0099590:exon | 40.0% | |
| TTAATTAAAGCCCTCACCAC+CGG | + | chr1_3:5794114-5794133 | Msa0099590:CDS | 40.0% | |
| TGGTAGAATACATCGACATC+TGG | - | chr1_3:5794235-5794254 | None:intergenic | 40.0% | |
| TCTGATGTAGTATGGACTTC+TGG | + | chr1_3:5795284-5795303 | Msa0099590:intron | 40.0% | |
| CTGATGTAGTATGGACTTCT+GGG | + | chr1_3:5795285-5795304 | Msa0099590:intron | 40.0% | |
| !! | TTGTTGTATGATGGACCCAA+AGG | + | chr1_3:5795374-5795393 | Msa0099590:intron | 40.0% |
| TATGATGCGGCATAACCTTT+GGG | - | chr1_3:5795392-5795411 | None:intergenic | 40.0% | |
| ATATGATGCGGCATAACCTT+TGG | - | chr1_3:5795393-5795412 | None:intergenic | 40.0% | |
| GGTTATGCCGCATCATATTT+AGG | + | chr1_3:5795395-5795414 | Msa0099590:intron | 40.0% | |
| ! | CTGGAAGTATGCAAGCATAT+CGG | - | chr1_3:5795585-5795604 | None:intergenic | 40.0% |
| CATTTACGGCTTCAGAAGAT+AGG | + | chr1_3:5795683-5795702 | Msa0099590:intron | 40.0% | |
| !!! | AATTTTGGCTACGATGCTTC+AGG | + | chr1_3:5795894-5795913 | Msa0099590:intron | 40.0% |
| TAACAGACAAGCTACTATCG+TGG | - | chr1_3:5795952-5795971 | None:intergenic | 40.0% | |
| GAAAATAGATAAGGCAGCAC+AGG | - | chr1_3:5796017-5796036 | None:intergenic | 40.0% | |
| ! | AAGCATATTAGGTGCTGCAT+TGG | - | chr1_3:5796077-5796096 | None:intergenic | 40.0% |
| ! | CAAGCTTTGTGATACAGAGA+AGG | + | chr1_3:5796153-5796172 | Msa0099590:intron | 40.0% |
| GCAAAGTTAATACCCAATGC+TGG | - | chr1_3:5796262-5796281 | None:intergenic | 40.0% | |
| !!! | TGGCTTTTTATTTCGGTGCT+AGG | + | chr1_3:5796353-5796372 | Msa0099590:CDS | 40.0% |
| TGCTAGGTTTGGATTTGACA+AGG | + | chr1_3:5796369-5796388 | Msa0099590:CDS | 40.0% | |
| TTGGATTTGACAAGGCTGAT+AGG | + | chr1_3:5796377-5796396 | Msa0099590:CDS | 40.0% | |
| TTTACCCTTTCACAAAGCTG+CGG | + | chr1_3:5796412-5796431 | Msa0099590:intron | 40.0% | |
| !!! | GATAGTGTTGCTGTTTTCAG+AGG | - | chr1_3:5796764-5796783 | None:intergenic | 40.0% |
| TCAAAGGAAAACTAGTGGAG+AGG | + | chr1_3:5796861-5796880 | Msa0099590:intron | 40.0% | |
| !! | CAACAAACTTTTGAGAGGCA+GGG | - | chr1_3:5797151-5797170 | None:intergenic | 40.0% |
| ! | ACTGCCAACAAACTTTTGAG+AGG | - | chr1_3:5797156-5797175 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr1_3:5797206-5797225 | Msa0099590:intron | 40.0% |
| ! | TTTGAAGTTGTTACAGGGTC+TGG | + | chr1_3:5797323-5797342 | Msa0099590:CDS | 40.0% |
| CTGATACTAAGAGGACTTTG+AGG | + | chr1_3:5797452-5797471 | Msa0099590:intron | 40.0% | |
| ! | TAAGAGGACTTTGAGGGATT+TGG | + | chr1_3:5797459-5797478 | Msa0099590:intron | 40.0% |
| GATTGAAAGGTGATCTCAGA+CGG | - | chr1_3:5797525-5797544 | None:intergenic | 40.0% | |
| AAATGACTCACGCTATGACT+TGG | + | chr1_3:5797551-5797570 | Msa0099590:intron | 40.0% | |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr1_3:5797707-5797726 | Msa0099590:intron | 40.0% |
| AACTGTGTCTGTTTCCTGAT+TGG | + | chr1_3:5797829-5797848 | Msa0099590:intron | 40.0% | |
| TGTCTGTTTCCTGATTGGTA+TGG | + | chr1_3:5797834-5797853 | Msa0099590:intron | 40.0% | |
| !!! | GGTTTTGAAAACTTTGGCTG+AGG | - | chr1_3:5797918-5797937 | None:intergenic | 40.0% |
| CTCCTATATCCATTGCTTCA+AGG | - | chr1_3:5798200-5798219 | None:intergenic | 40.0% | |
| ! | CTTGTTGTATGCACAACTCT+AGG | - | chr1_3:5798488-5798507 | None:intergenic | 40.0% |
| TGAGAGAGAGAGAGAGAGAA+TGG | - | chr1_3:5793886-5793905 | None:intergenic | 45.0% | |
| ACAACAACCATGGACGTTGT+AGG | + | chr1_3:5794027-5794046 | Msa0099590:exon | 45.0% | |
| AGACTTCTTCGACAGTACGA+GGG | - | chr1_3:5794065-5794084 | None:intergenic | 45.0% | |
| AAGACTTCTTCGACAGTACG+AGG | - | chr1_3:5794066-5794085 | None:intergenic | 45.0% | |
| ! | GCAATGCCGCAACGTATTTT+GGG | - | chr1_3:5795053-5795072 | None:intergenic | 45.0% |
| ! | TGCAATGCCGCAACGTATTT+TGG | - | chr1_3:5795054-5795073 | None:intergenic | 45.0% |
| TAAATCTTATGCAGCAGCGC+TGG | - | chr1_3:5795604-5795623 | None:intergenic | 45.0% | |
| !! | TTAATACCCAATGCTGGCTC+TGG | - | chr1_3:5796256-5796275 | None:intergenic | 45.0% |
| TTGCAGTACACAGTGATGCT+TGG | + | chr1_3:5796320-5796339 | Msa0099590:CDS | 45.0% | |
| ! | TGATGCTTGGTTGCTTTCTG+TGG | + | chr1_3:5796333-5796352 | Msa0099590:CDS | 45.0% |
| ! | GCAGCTTTGTGAAAGGGTAA+AGG | - | chr1_3:5796413-5796432 | None:intergenic | 45.0% |
| ! | AAAGCCGCAGCTTTGTGAAA+GGG | - | chr1_3:5796419-5796438 | None:intergenic | 45.0% |
| ! | TAAAGCCGCAGCTTTGTGAA+AGG | - | chr1_3:5796420-5796439 | None:intergenic | 45.0% |
| !! | CCAACAAACTTTTGAGAGGC+AGG | - | chr1_3:5797152-5797171 | None:intergenic | 45.0% |
| CCTGCCTCTCAAAAGTTTGT+TGG | + | chr1_3:5797149-5797168 | Msa0099590:intron | 45.0% | |
| ! | TAGTCTAGTTTGCATGACCG+TGG | + | chr1_3:5797659-5797678 | Msa0099590:intron | 45.0% |
| AAGGATTCACACATGTGCCA+CGG | - | chr1_3:5797679-5797698 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+AGG | + | chr1_3:5797685-5797704 | Msa0099590:intron | 45.0% | |
| ! | ACTTTCTAGCGCCATAGAGA+GGG | - | chr1_3:5797796-5797815 | None:intergenic | 45.0% |
| ATCTGCATTGCCATTGCCAT+TGG | - | chr1_3:5797939-5797958 | None:intergenic | 45.0% | |
| GATGAGGTTGAGGATGAAGA+TGG | + | chr1_3:5797969-5797988 | Msa0099590:CDS | 45.0% | |
| GTTGAGGATGAAGATGGTGT+AGG | + | chr1_3:5797975-5797994 | Msa0099590:CDS | 45.0% | |
| GAGGAAGATGAGGAAGAACA+CGG | + | chr1_3:5798005-5798024 | Msa0099590:CDS | 45.0% | |
| AACACGGAGAGACTTTGTGT+GGG | + | chr1_3:5798021-5798040 | Msa0099590:CDS | 45.0% | |
| GCTGCGACATATGTGAGAAA+TGG | + | chr1_3:5798084-5798103 | Msa0099590:CDS | 45.0% | |
| GCCCTTGAAGCAATGGATAT+AGG | + | chr1_3:5798195-5798214 | Msa0099590:exon | 45.0% | |
| !! | TATGCACAACTCTAGGACTC+GGG | - | chr1_3:5798481-5798500 | None:intergenic | 45.0% |
| !! | GTATGCACAACTCTAGGACT+CGG | - | chr1_3:5798482-5798501 | None:intergenic | 45.0% |
| !!! | AATTTTTTTTACAAAAAAAT+AGG | - | chr1_3:5794179-5794198 | None:intergenic | 5.0% |
| TCGACAGTACGAGGGTTGTA+CGG | - | chr1_3:5794057-5794076 | None:intergenic | 50.0% | |
| AAAAAGAGAAGACCGACCGG+TGG | - | chr1_3:5794133-5794152 | None:intergenic | 50.0% | |
| TTCTACCAGCAGTGTGATCC+CGG | + | chr1_3:5794247-5794266 | Msa0099590:CDS | 50.0% | |
| TATTACCGGGATCACACTGC+TGG | - | chr1_3:5794255-5794274 | None:intergenic | 50.0% | |
| GGTGGGTCATAACAAGAAGC+TGG | + | chr1_3:5794933-5794952 | Msa0099590:intron | 50.0% | |
| TGCTGTTGCTGCGTTTGTCA+TGG | + | chr1_3:5795479-5795498 | Msa0099590:intron | 50.0% | |
| GCTCGCTCGGAAATCCATAA+AGG | - | chr1_3:5796189-5796208 | None:intergenic | 50.0% | |
| GCGGCTTTACTCTGCTCAAT+AGG | + | chr1_3:5796431-5796450 | Msa0099590:intron | 50.0% | |
| ! | ATTGGGGATTTTCGGCGTTC+TGG | + | chr1_3:5796797-5796816 | Msa0099590:intron | 50.0% |
| AAGTTGTTACAGGGTCTGGC+AGG | + | chr1_3:5797327-5797346 | Msa0099590:CDS | 50.0% | |
| GTCTGGCAGGAAACAAGGAA+AGG | + | chr1_3:5797340-5797359 | Msa0099590:CDS | 50.0% | |
| GATTTGGATTCCCTGCAGTC+TGG | + | chr1_3:5797475-5797494 | Msa0099590:intron | 50.0% | |
| CCATGGATATCCAGACTGCA+GGG | - | chr1_3:5797488-5797507 | None:intergenic | 50.0% | |
| ACCATGGATATCCAGACTGC+AGG | - | chr1_3:5797489-5797508 | None:intergenic | 50.0% | |
| ! | AGAAAGTGTGTCGTCTCGTC+TGG | + | chr1_3:5797598-5797617 | Msa0099590:intron | 50.0% |
| ATTCGGATCTCCTGCAGCAA+AGG | - | chr1_3:5797698-5797717 | None:intergenic | 50.0% | |
| ! | GACTTTCTAGCGCCATAGAG+AGG | - | chr1_3:5797797-5797816 | None:intergenic | 50.0% |
| GGCAATGCAGATGCAGTCAA+AGG | + | chr1_3:5797947-5797966 | Msa0099590:CDS | 50.0% | |
| GCAGATGCAGTCAAAGGATG+AGG | + | chr1_3:5797953-5797972 | Msa0099590:CDS | 50.0% | |
| GCAGTCAAAGGATGAGGTTG+AGG | + | chr1_3:5797959-5797978 | Msa0099590:CDS | 50.0% | |
| GGATGAAGATGGTGTAGGTG+TGG | + | chr1_3:5797980-5797999 | Msa0099590:CDS | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | + | chr1_3:5798020-5798039 | Msa0099590:CDS | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | + | chr1_3:5798022-5798041 | Msa0099590:CDS | 50.0% | |
| CGTGAAGATTACTCCGGCAA+GGG | + | chr1_3:5798121-5798140 | Msa0099590:CDS | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | - | chr1_3:5798137-5798156 | None:intergenic | 50.0% | |
| TTAAAGCCCTCACCACCGGT+CGG | + | chr1_3:5794118-5794137 | Msa0099590:intron | 55.0% | |
| ATGGATTTCCGAGCGAGCAG+TGG | + | chr1_3:5796191-5796210 | Msa0099590:CDS | 55.0% | |
| TGGATTTCCGAGCGAGCAGT+GGG | + | chr1_3:5796192-5796211 | Msa0099590:CDS | 55.0% | |
| !! | AATGCTGGCTCTGGAAGCTC+AGG | - | chr1_3:5796247-5796266 | None:intergenic | 55.0% |
| TGAGCTTCCAGAGCCAGCAT+TGG | + | chr1_3:5796246-5796265 | Msa0099590:CDS | 55.0% | |
| GAGCTTCCAGAGCCAGCATT+GGG | + | chr1_3:5796247-5796266 | Msa0099590:CDS | 55.0% | |
| GTCGTAGACACGTGTGCAGT+TGG | + | chr1_3:5796892-5796911 | Msa0099590:intron | 55.0% | |
| ACAGGGTCTGGCAGGAAACA+AGG | + | chr1_3:5797335-5797354 | Msa0099590:CDS | 55.0% | |
| CCCTGCAGTCTGGATATCCA+TGG | + | chr1_3:5797485-5797504 | Msa0099590:intron | 55.0% | |
| CGGTGCAGATTGCTTGACCA+TGG | - | chr1_3:5797505-5797524 | None:intergenic | 55.0% | |
| AGATGGTGTAGGTGTGGACG+AGG | + | chr1_3:5797986-5798005 | Msa0099590:CDS | 55.0% | |
| AGGTGTGGACGAGGAAGATG+AGG | + | chr1_3:5797995-5798014 | Msa0099590:CDS | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | + | chr1_3:5798029-5798048 | Msa0099590:CDS | 55.0% | |
| GCTATGCAGCTGACGAGTTC+TGG | + | chr1_3:5798057-5798076 | Msa0099590:CDS | 55.0% | |
| GCGTGAAGATTACTCCGGCA+AGG | + | chr1_3:5798120-5798139 | Msa0099590:CDS | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | - | chr1_3:5798173-5798192 | None:intergenic | 55.0% | |
| AGAGCTCGCCCTTGAAGCAA+TGG | + | chr1_3:5798188-5798207 | Msa0099590:exon | 55.0% | |
| ! | CGGAGCACCTACAACGTCCA+TGG | - | chr1_3:5794037-5794056 | None:intergenic | 60.0% |
| AGAAGACCGACCGGTGGTGA+GGG | - | chr1_3:5794127-5794146 | None:intergenic | 60.0% | |
| ATTTCCGAGCGAGCAGTGGG+AGG | + | chr1_3:5796195-5796214 | Msa0099590:CDS | 60.0% | |
| TTCACCTCCCACTGCTCGCT+CGG | - | chr1_3:5796202-5796221 | None:intergenic | 60.0% | |
| GGAGGTGAATCTGCCAGCTG+AGG | + | chr1_3:5796213-5796232 | Msa0099590:CDS | 60.0% | |
| !! | CAACTCTAGGACTCGGGTGG+TGG | - | chr1_3:5798475-5798494 | None:intergenic | 60.0% |
| !! | GCACAACTCTAGGACTCGGG+TGG | - | chr1_3:5798478-5798497 | None:intergenic | 60.0% |
| GAGAAGACCGACCGGTGGTG+AGG | - | chr1_3:5794128-5794147 | None:intergenic | 65.0% | |
| TCAGGCGGCACTTCCTCAGC+TGG | - | chr1_3:5796229-5796248 | None:intergenic | 65.0% | |
| !! | GCTGGCTCTGGAAGCTCAGG+CGG | - | chr1_3:5796244-5796263 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5793866 | 5798513 | 5793866 | ID=Msa0099590;Name=Msa0099590 |
| chr1_3 | mRNA | 5793866 | 5798513 | 5793866 | ID=Msa0099590-mRNA-1;Parent=Msa0099590;Name=Msa0099590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170|1|1|1|1|1|5|311|264 |
| chr1_3 | exon | 5793866 | 5794135 | 5793866 | ID=Msa0099590-mRNA-1:exon:2227;Parent=Msa0099590-mRNA-1 |
| chr1_3 | exon | 5794236 | 5794268 | 5794236 | ID=Msa0099590-mRNA-1:exon:2228;Parent=Msa0099590-mRNA-1 |
| chr1_3 | exon | 5796170 | 5796398 | 5796170 | ID=Msa0099590-mRNA-1:exon:2229;Parent=Msa0099590-mRNA-1 |
| chr1_3 | exon | 5797283 | 5797415 | 5797283 | ID=Msa0099590-mRNA-1:exon:2230;Parent=Msa0099590-mRNA-1 |
| chr1_3 | exon | 5797903 | 5798513 | 5797903 | ID=Msa0099590-mRNA-1:exon:2231;Parent=Msa0099590-mRNA-1 |
| chr1_3 | five_prime_UTR | 5793866 | 5794035 | 5793866 | ID=Msa0099590-mRNA-1:five_prime_utr;Parent=Msa0099590-mRNA-1 |
| chr1_3 | CDS | 5794036 | 5794135 | 5794036 | ID=Msa0099590-mRNA-1:cds;Parent=Msa0099590-mRNA-1 |
| chr1_3 | CDS | 5794236 | 5794268 | 5794236 | ID=Msa0099590-mRNA-1:cds;Parent=Msa0099590-mRNA-1 |
| chr1_3 | CDS | 5796170 | 5796398 | 5796170 | ID=Msa0099590-mRNA-1:cds;Parent=Msa0099590-mRNA-1 |
| chr1_3 | CDS | 5797283 | 5797415 | 5797283 | ID=Msa0099590-mRNA-1:cds;Parent=Msa0099590-mRNA-1 |
| chr1_3 | CDS | 5797903 | 5798202 | 5797903 | ID=Msa0099590-mRNA-1:cds;Parent=Msa0099590-mRNA-1 |
| chr1_3 | three_prime_UTR | 5798203 | 5798513 | 5798203 | ID=Msa0099590-mRNA-1:three_prime_utr;Parent=Msa0099590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
