Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148200 | XP_013465876.1 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148200 | sp|Q5XEM9|ALFL5_ARATH | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 5.97e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148200 | A0A072VES1 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0148200 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028800 | Msa0148200 | 0.807028 | 6.173992e-50 | -8.615850e-47 |
| Msa0099470 | Msa0148200 | 0.848489 | 5.934667e-60 | -8.615850e-47 |
| Msa0099590 | Msa0148200 | 0.953658 | 1.686142e-111 | -8.615850e-47 |
| Msa0148200 | Msa0791630 | 0.821605 | 3.694678e-53 | -8.615850e-47 |
| Msa0148200 | Msa1043550 | 0.970050 | 4.954481e-131 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148200 | MtrunA17_Chr1g0150821 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
| Msa0148200 | MtrunA17_Chr8g0343441 | 78.378 | 259 | 45 | 3 | 8 | 264 | 7 | 256 | 1.90e-130 | 369 |
| Msa0148200 | MtrunA17_Chr2g0300241 | 74.809 | 262 | 49 | 3 | 5 | 264 | 7 | 253 | 3.98e-125 | 356 |
| Msa0148200 | MtrunA17_Chr4g0076771 | 70.588 | 255 | 64 | 3 | 10 | 263 | 10 | 254 | 2.95e-113 | 326 |
| Msa0148200 | MtrunA17_Chr2g0329821 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 5.75e-111 | 320 |
| Msa0148200 | MtrunA17_Chr4g0006381 | 62.500 | 256 | 77 | 4 | 9 | 264 | 6 | 242 | 4.22e-94 | 277 |
| Msa0148200 | MtrunA17_Chr7g0242511 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 1.67e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148200 | AT5G20510.1 | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 6.07e-124 | 353 |
| Msa0148200 | AT3G42790.1 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 1.08e-122 | 350 |
| Msa0148200 | AT2G02470.1 | 70.196 | 255 | 69 | 3 | 10 | 264 | 9 | 256 | 9.23e-111 | 320 |
| Msa0148200 | AT2G02470.2 | 67.578 | 256 | 65 | 3 | 10 | 264 | 9 | 247 | 2.32e-109 | 316 |
| Msa0148200 | AT5G26210.1 | 78.077 | 260 | 49 | 1 | 4 | 263 | 3 | 254 | 2.14e-108 | 314 |
| Msa0148200 | AT1G14510.1 | 67.063 | 252 | 71 | 2 | 10 | 261 | 9 | 248 | 6.38e-107 | 310 |
| Msa0148200 | AT5G20510.2 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.27e-98 | 286 |
| Msa0148200 | AT5G05610.2 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.38e-97 | 286 |
| Msa0148200 | AT5G05610.1 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.38e-97 | 286 |
| Msa0148200 | AT3G11200.1 | 61.977 | 263 | 82 | 3 | 1 | 263 | 1 | 245 | 1.32e-96 | 283 |
| Msa0148200 | AT5G20510.3 | 77.914 | 163 | 36 | 0 | 6 | 168 | 6 | 168 | 1.47e-82 | 246 |
| Msa0148200 | AT3G11200.2 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.31e-80 | 241 |
| Msa0148200 | AT2G02470.3 | 79.333 | 150 | 30 | 1 | 10 | 159 | 9 | 157 | 3.11e-72 | 222 |
Find 89 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1_4:+8451078 | Msa0148200:CDS |
| CTATCGAATTGTTCCGAATT+AGG | 0.167829 | 1_4:+8453247 | Msa0148200:three_prime_UTR |
| TAAGGTATGTTATATTAATT+AGG | 0.274725 | 1_4:+8453213 | Msa0148200:three_prime_UTR |
| AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1_4:+8451203 | Msa0148200:CDS |
| GCTATGCAGCTGACGAGTTC+TGG | 0.291054 | 1_4:+8452963 | Msa0148200:CDS |
| ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1_4:+8452223 | Msa0148200:CDS |
| CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1_4:-8452299 | None:intergenic |
| ACTAATTTGTTTAGTTGATC+AGG | 0.353424 | 1_4:+8453165 | Msa0148200:three_prime_UTR |
| TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1_4:+8452229 | Msa0148200:CDS |
| TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1_4:-8453040 | None:intergenic |
| GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1_4:-8452305 | None:intergenic |
| CTGACATAAATATCCTAATT+CGG | 0.385685 | 1_4:-8453260 | None:intergenic |
| GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1_4:-8452220 | None:intergenic |
| CTCCTATATCCATTGCTTCA+AGG | 0.401682 | 1_4:-8453103 | None:intergenic |
| CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1_4:+8452300 | Msa0148200:CDS |
| AAGATAAGAGAGTGAGATTG+TGG | 0.422672 | 1_4:-8448886 | None:intergenic |
| TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1_4:-8451159 | None:intergenic |
| TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1_4:+8451283 | Msa0148200:CDS |
| TTATAGTATGTAACTGTACT+TGG | 0.436876 | 1_4:+8453325 | Msa0148200:three_prime_UTR |
| GCTCGCTCGGAAATCCATAA+AGG | 0.438097 | 1_4:-8451092 | None:intergenic |
| GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1_4:+8451174 | Msa0148200:CDS |
| GTTACATACTATAAAACTTA+AGG | 0.440343 | 1_4:-8453316 | None:intergenic |
| TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1_4:-8451132 | None:intergenic |
| AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1_4:-8451150 | None:intergenic |
| ATCTGCATTGCCATTGCCAT+TGG | 0.459684 | 1_4:-8452842 | None:intergenic |
| GCCCTTGAAGCAATGGATAT+AGG | 0.461748 | 1_4:+8453101 | Msa0148200:exon |
| GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1_4:-8453076 | None:intergenic |
| TCCTATATCCATTGCTTCAA+GGG | 0.467689 | 1_4:-8453102 | None:intergenic |
| TTCACCTCCCACTGCTCGCT+CGG | 0.467752 | 1_4:-8451105 | None:intergenic |
| CAACTCTAGGACTCGGGTGG+TGG | 0.482465 | 1_4:-8453378 | None:intergenic |
| ATATAGGAGTTTGTGTAGAT+TGG | 0.482847 | 1_4:+8453117 | Msa0148200:three_prime_UTR |
| CTTGTTGTATGCACAACTCT+AGG | 0.488102 | 1_4:-8453391 | None:intergenic |
| TAAGAGAGTGAGATTGTGGA+GGG | 0.488743 | 1_4:-8448882 | None:intergenic |
| TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1_4:-8448964 | None:intergenic |
| GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1_4:+8452990 | Msa0148200:CDS |
| AATTCGGAACAATTCGATAG+TGG | 0.501907 | 1_4:-8453244 | None:intergenic |
| TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1_4:+8451239 | Msa0148200:CDS |
| TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1_4:+8449159 | Msa0148200:CDS |
| ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1_4:+8448937 | Msa0148200:exon |
| ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1_4:+8451193 | Msa0148200:CDS |
| AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1_4:+8452233 | Msa0148200:CDS |
| AGAAGACCGACCGGTGGTGA+GGG | 0.523124 | 1_4:-8449034 | None:intergenic |
| TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1_4:+8451188 | Msa0148200:CDS |
| GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1_4:+8451153 | Msa0148200:CDS |
| TTAATTAAAGCCCTCACCAC+CGG | 0.530739 | 1_4:+8449024 | Msa0148200:CDS |
| AAGACTTCTTCGACAGTACG+AGG | 0.536014 | 1_4:-8448973 | None:intergenic |
| TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1_4:+8451226 | Msa0148200:CDS |
| GAAGTCTTTCGAGATTTCAA+AGG | 0.539441 | 1_4:+8448988 | Msa0148200:CDS |
| ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1_4:+8452241 | Msa0148200:CDS |
| AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1_4:+8452901 | Msa0148200:CDS |
| AGAGCTCGCCCTTGAAGCAA+TGG | 0.549499 | 1_4:+8453094 | Msa0148200:exon |
| TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1_4:+8451275 | Msa0148200:CDS |
| CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1_4:+8452224 | Msa0148200:CDS |
| CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1_4:-8448944 | None:intergenic |
| GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1_4:-8451165 | None:intergenic |
| GCAGTCAAAGGATGAGGTTG+AGG | 0.565823 | 1_4:+8452865 | Msa0148200:CDS |
| ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1_4:+8452998 | Msa0148200:CDS |
| GCAGATGCAGTCAAAGGATG+AGG | 0.569670 | 1_4:+8452859 | Msa0148200:CDS |
| ATAAGAGAGTGAGATTGTGG+AGG | 0.569849 | 1_4:-8448883 | None:intergenic |
| TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1_4:+8451152 | Msa0148200:CDS |
| TATGCACAACTCTAGGACTC+GGG | 0.572720 | 1_4:-8453384 | None:intergenic |
| GTATGCACAACTCTAGGACT+CGG | 0.573947 | 1_4:-8453385 | None:intergenic |
| CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1_4:+8453027 | Msa0148200:CDS |
| TGGATTTCCGAGCGAGCAGT+GGG | 0.579516 | 1_4:+8451098 | Msa0148200:CDS |
| GGCAATGCAGATGCAGTCAA+AGG | 0.579948 | 1_4:+8452853 | Msa0148200:CDS |
| CTTTCTCAACAACAAAGAGA+AGG | 0.580893 | 1_4:+8448841 | Msa0148200:five_prime_UTR |
| GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1_4:-8451147 | None:intergenic |
| GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1_4:+8453026 | Msa0148200:CDS |
| GAGAAGACCGACCGGTGGTG+AGG | 0.592144 | 1_4:-8449035 | None:intergenic |
| TGAAGTGAAACTGAAAGAAA+CGG | 0.600500 | 1_4:-8448912 | None:intergenic |
| ATGGATTTCCGAGCGAGCAG+TGG | 0.601477 | 1_4:+8451097 | Msa0148200:CDS |
| TATTACCGGGATCACACTGC+TGG | 0.607631 | 1_4:-8449164 | None:intergenic |
| GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1_4:+8452935 | Msa0148200:CDS |
| AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1_4:+8452927 | Msa0148200:CDS |
| GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1_4:+8452886 | Msa0148200:CDS |
| AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1_4:+8452892 | Msa0148200:CDS |
| TTTCTCAACAACAAAGAGAA+GGG | 0.630443 | 1_4:+8448842 | Msa0148200:five_prime_UTR |
| GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1_4:+8452926 | Msa0148200:CDS |
| GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1_4:+8451119 | Msa0148200:CDS |
| AGACTTCTTCGACAGTACGA+GGG | 0.643030 | 1_4:-8448972 | None:intergenic |
| GATGAGGTTGAGGATGAAGA+TGG | 0.646194 | 1_4:+8452875 | Msa0148200:CDS |
| TCACTTCACAACAACAACCA+TGG | 0.647922 | 1_4:+8448927 | Msa0148200:exon |
| GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1_4:+8452911 | Msa0148200:CDS |
| ATTTCCGAGCGAGCAGTGGG+AGG | 0.670558 | 1_4:+8451101 | Msa0148200:CDS |
| GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1_4:+8452881 | Msa0148200:CDS |
| GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1_4:+8452246 | Msa0148200:CDS |
| GCACAACTCTAGGACTCGGG+TGG | 0.694311 | 1_4:-8453381 | None:intergenic |
| ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1_4:+8452928 | Msa0148200:CDS |
| AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1_4:+8453021 | Msa0148200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAATTATTTTATCATA+AGG | - | chr1_4:8450367-8450386 | None:intergenic | 10.0% |
| !!! | TTTTCAATTAGTTTTAATTT+TGG | + | chr1_4:8450785-8450804 | Msa0148200:intron | 10.0% |
| !!! | ATTTATAATTTGTTGTATGA+TGG | + | chr1_4:8450272-8450291 | Msa0148200:intron | 15.0% |
| !!! | AAATTATTTTATCATAAGGT+GGG | - | chr1_4:8450363-8450382 | None:intergenic | 15.0% |
| !!! | AAAATTATTTTATCATAAGG+TGG | - | chr1_4:8450364-8450383 | None:intergenic | 15.0% |
| !! | AAAATTGAAATGTTCATTTA+CGG | + | chr1_4:8450576-8450595 | Msa0148200:intron | 15.0% |
| !!! | CAGTTAATTTTAATTTTTTC+AGG | + | chr1_4:8450829-8450848 | Msa0148200:intron | 15.0% |
| !!! | TTGATTGTATTTTGTATTTT+TGG | + | chr1_4:8451023-8451042 | Msa0148200:intron | 15.0% |
| !!! | GACTTTTTTTATTTGAATTT+TGG | + | chr1_4:8451368-8451387 | Msa0148200:intron | 15.0% |
| !!! | TTTTTTATTTGAATTTTGGT+TGG | + | chr1_4:8451372-8451391 | Msa0148200:intron | 15.0% |
| !!! | AAATTATGTGATGTTTTATT+TGG | + | chr1_4:8451513-8451532 | Msa0148200:intron | 15.0% |
| !!! | AATTATGTGATGTTTTATTT+GGG | + | chr1_4:8451514-8451533 | Msa0148200:intron | 15.0% |
| !! | TAAGGTATGTTATATTAATT+AGG | + | chr1_4:8453213-8453232 | Msa0148200:three_prime_UTR | 15.0% |
| !! | TTTACGAAATAGAATATTAC+CGG | - | chr1_4:8449181-8449200 | None:intergenic | 20.0% |
| !! | GTAAAAGAATCTATAATAGT+TGG | + | chr1_4:8449761-8449780 | Msa0148200:intron | 20.0% |
| !! | ATTTGCATATGAATTACATT+TGG | + | chr1_4:8449819-8449838 | Msa0148200:intron | 20.0% |
| !!! | AATTATTTTATCATAAGGTG+GGG | - | chr1_4:8450362-8450381 | None:intergenic | 20.0% |
| !! | TTTAAACTTGAAGAATCTAA+TGG | - | chr1_4:8450467-8450486 | None:intergenic | 20.0% |
| !! | TTTAGTTAATCCTAATAGAA+AGG | + | chr1_4:8450527-8450546 | Msa0148200:intron | 20.0% |
| !!! | TGAAATTGAGTTACTTATTT+TGG | + | chr1_4:8450639-8450658 | Msa0148200:intron | 20.0% |
| !!! | TGTATGAAGATTTTAACTTA+GGG | + | chr1_4:8450689-8450708 | Msa0148200:intron | 20.0% |
| !! | AAGATAATCACTCTTATAAA+TGG | - | chr1_4:8451543-8451562 | None:intergenic | 20.0% |
| !! | ACAGTGATAAAAAAAATCAA+AGG | + | chr1_4:8451751-8451770 | Msa0148200:intron | 20.0% |
| !!! | TTAGTCTTGCTTTTAATTTA+AGG | + | chr1_4:8453195-8453214 | Msa0148200:three_prime_UTR | 20.0% |
| !! | GTTACATACTATAAAACTTA+AGG | - | chr1_4:8453319-8453338 | None:intergenic | 20.0% |
| ! | ATCTGGAAAGAAAAAAAACA+CGG | - | chr1_4:8449130-8449149 | None:intergenic | 25.0% |
| ! | TTACGAAATAGAATATTACC+GGG | - | chr1_4:8449180-8449199 | None:intergenic | 25.0% |
| ! | TTCAATCACATTCAAAATTG+TGG | - | chr1_4:8449435-8449454 | None:intergenic | 25.0% |
| ! | ATTAATCACATGCAAAATTG+TGG | - | chr1_4:8449462-8449481 | None:intergenic | 25.0% |
| !! | AATTTTGCATGTGATTAATC+AGG | + | chr1_4:8449463-8449482 | Msa0148200:intron | 25.0% |
| ! | TGTAACTATAAGGGAAAATT+GGG | + | chr1_4:8449495-8449514 | Msa0148200:intron | 25.0% |
| ! | GTGTCTATTATTTACATACA+TGG | + | chr1_4:8449517-8449536 | Msa0148200:intron | 25.0% |
| ! | AATCAAAATGCTACCATTTA+TGG | + | chr1_4:8449617-8449636 | Msa0148200:intron | 25.0% |
| ! | ATCAAAATGCTACCATTTAT+GGG | + | chr1_4:8449618-8449637 | Msa0148200:intron | 25.0% |
| !!! | AAAATTTCTACTGTTTCTGT+TGG | + | chr1_4:8449658-8449677 | Msa0148200:intron | 25.0% |
| !! | TATCAACCAATCAAACATTT+TGG | - | chr1_4:8449716-8449735 | None:intergenic | 25.0% |
| ! | GTACTATATTACACTTCATA+GGG | - | chr1_4:8449919-8449938 | None:intergenic | 25.0% |
| !!! | AGCAAAACTTTATTTTGTTC+AGG | + | chr1_4:8450116-8450135 | Msa0148200:intron | 25.0% |
| !!! | TGAAATTTTTGAGCAAATCA+AGG | - | chr1_4:8450238-8450257 | None:intergenic | 25.0% |
| ! | CTAGATAATTCCTTTCTATT+AGG | - | chr1_4:8450540-8450559 | None:intergenic | 25.0% |
| ! | CTAATAGAAAGGAATTATCT+AGG | + | chr1_4:8450538-8450557 | Msa0148200:intron | 25.0% |
| !!! | AATTGAGTTACTTATTTTGG+CGG | + | chr1_4:8450642-8450661 | Msa0148200:intron | 25.0% |
| !!! | CTGTATGAAGATTTTAACTT+AGG | + | chr1_4:8450688-8450707 | Msa0148200:intron | 25.0% |
| ! | AATCCAGTATCAATATTCAA+GGG | - | chr1_4:8450724-8450743 | None:intergenic | 25.0% |
| ! | AAATCCAGTATCAATATTCA+AGG | - | chr1_4:8450725-8450744 | None:intergenic | 25.0% |
| ! | TTATATTCATCATTCAAGAG+GGG | - | chr1_4:8450893-8450912 | None:intergenic | 25.0% |
| ! | CTTATATTCATCATTCAAGA+GGG | - | chr1_4:8450894-8450913 | None:intergenic | 25.0% |
| !!! | AATATAAAAGTTCTGAAGGT+TGG | - | chr1_4:8450953-8450972 | None:intergenic | 25.0% |
| !! | GAGAAATATAAAAGTTCTGA+AGG | - | chr1_4:8450957-8450976 | None:intergenic | 25.0% |
| ! | AAAAATCAAAGGAAAACTAG+TGG | + | chr1_4:8451762-8451781 | Msa0148200:intron | 25.0% |
| ! | CTAAAAGGAAAGAAACAATA+AGG | - | chr1_4:8451985-8452004 | None:intergenic | 25.0% |
| !! | AAGATACTCGTTTTACTAAA+AGG | - | chr1_4:8452000-8452019 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGCCATTCATTGA+TGG | + | chr1_4:8452094-8452113 | Msa0148200:intron | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | - | chr1_4:8452444-8452463 | None:intergenic | 25.0% |
| ! | GTATGGTATTTAATCAGTTA+AGG | + | chr1_4:8452757-8452776 | Msa0148200:intron | 25.0% |
| !!! | ACTAATTTGTTTAGTTGATC+AGG | + | chr1_4:8453165-8453184 | Msa0148200:three_prime_UTR | 25.0% |
| ! | CTGACATAAATATCCTAATT+CGG | - | chr1_4:8453263-8453282 | None:intergenic | 25.0% |
| ! | TTATAGTATGTAACTGTACT+TGG | + | chr1_4:8453325-8453344 | Msa0148200:three_prime_UTR | 25.0% |
| TTTCTCAACAACAAAGAGAA+GGG | + | chr1_4:8448842-8448861 | Msa0148200:five_prime_UTR | 30.0% | |
| TGAAGTGAAACTGAAAGAAA+CGG | - | chr1_4:8448915-8448934 | None:intergenic | 30.0% | |
| AGAAAAAACAGTTACAGAAG+TGG | + | chr1_4:8449274-8449293 | Msa0148200:intron | 30.0% | |
| GAAAAAACAGTTACAGAAGT+GGG | + | chr1_4:8449275-8449294 | Msa0148200:intron | 30.0% | |
| TCAAACACGTGATAAAAACA+AGG | - | chr1_4:8449360-8449379 | None:intergenic | 30.0% | |
| TCAATTCTAAGTCAAAGTTG+TGG | + | chr1_4:8449388-8449407 | Msa0148200:intron | 30.0% | |
| TGTTGCATGTGTAACTATAA+GGG | + | chr1_4:8449486-8449505 | Msa0148200:intron | 30.0% | |
| GTGTAACTATAAGGGAAAAT+TGG | + | chr1_4:8449494-8449513 | Msa0148200:intron | 30.0% | |
| GCTTGTACTATTGTTCATTT+AGG | + | chr1_4:8449550-8449569 | Msa0148200:intron | 30.0% | |
| TGCATATGAATTACATTTGG+TGG | + | chr1_4:8449822-8449841 | Msa0148200:intron | 30.0% | |
| GCATATGAATTACATTTGGT+GGG | + | chr1_4:8449823-8449842 | Msa0148200:intron | 30.0% | |
| CGTACTATATTACACTTCAT+AGG | - | chr1_4:8449920-8449939 | None:intergenic | 30.0% | |
| ATGAAGTGTAATATAGTACG+CGG | + | chr1_4:8449920-8449939 | Msa0148200:intron | 30.0% | |
| TAACCTTAATACATCGTACA+TGG | - | chr1_4:8449985-8450004 | None:intergenic | 30.0% | |
| AACATAAGCAACAACAAGTA+CGG | - | chr1_4:8450334-8450353 | None:intergenic | 30.0% | |
| !!! | ATTGAGTTACTTATTTTGGC+GGG | + | chr1_4:8450643-8450662 | Msa0148200:intron | 30.0% |
| !! | TAGAAGCTTGTCTGTTATTT+TGG | + | chr1_4:8450861-8450880 | Msa0148200:intron | 30.0% |
| GCTTATATTCATCATTCAAG+AGG | - | chr1_4:8450895-8450914 | None:intergenic | 30.0% | |
| GGTTTCCAAGAAAATAGATA+AGG | - | chr1_4:8450932-8450951 | None:intergenic | 30.0% | |
| ACAATCAACAATTTCAACTG+TGG | - | chr1_4:8451011-8451030 | None:intergenic | 30.0% | |
| AAGGAAAATCTTTGCCTTTA+TGG | + | chr1_4:8451078-8451097 | Msa0148200:CDS | 30.0% | |
| !! | CTTTCTGTGGCTTTTTATTT+CGG | + | chr1_4:8451252-8451271 | Msa0148200:CDS | 30.0% |
| ACTAAAATGCAAAGGATGAA+AGG | - | chr1_4:8451478-8451497 | None:intergenic | 30.0% | |
| ! | GATTATCGACTAAAATGCAA+AGG | - | chr1_4:8451486-8451505 | None:intergenic | 30.0% |
| TAGTGAAAAACTAACAGTAC+TGG | - | chr1_4:8451566-8451585 | None:intergenic | 30.0% | |
| !! | GCATTACTTTTGTCAAATAG+CGG | + | chr1_4:8451605-8451624 | Msa0148200:intron | 30.0% |
| GCTAAAGAGTTATAGCATAA+TGG | + | chr1_4:8451629-8451648 | Msa0148200:intron | 30.0% | |
| !! | TATCTGCTATTTCACACATT+GGG | + | chr1_4:8451686-8451705 | Msa0148200:intron | 30.0% |
| CTTACTTGAGTGTATGATAT+TGG | + | chr1_4:8451920-8451939 | Msa0148200:intron | 30.0% | |
| GTAACAACTTCAAAGATTGT+TGG | - | chr1_4:8452223-8452242 | None:intergenic | 30.0% | |
| !! | ACAATCTTTGAAGTTGTTAC+AGG | + | chr1_4:8452223-8452242 | Msa0148200:CDS | 30.0% |
| !! | CAATCTTTGAAGTTGTTACA+GGG | + | chr1_4:8452224-8452243 | Msa0148200:CDS | 30.0% |
| !! | CTTAGAGTTTGATTTGGATT+TGG | - | chr1_4:8452302-8452321 | None:intergenic | 30.0% |
| CAAATCCAAATCAAACTCTA+AGG | + | chr1_4:8452300-8452319 | Msa0148200:CDS | 30.0% | |
| TAAACATATATCCCTCTCTA+TGG | + | chr1_4:8452688-8452707 | Msa0148200:intron | 30.0% | |
| GATTAAATACCATACCAATC+AGG | - | chr1_4:8452752-8452771 | None:intergenic | 30.0% | |
| ATATGTGAGAAATGGTTTCA+CGG | + | chr1_4:8452998-8453017 | Msa0148200:CDS | 30.0% | |
| ATATAGGAGTTTGTGTAGAT+TGG | + | chr1_4:8453117-8453136 | Msa0148200:three_prime_UTR | 30.0% | |
| CTTTCTCAACAACAAAGAGA+AGG | + | chr1_4:8448841-8448860 | Msa0148200:five_prime_UTR | 35.0% | |
| AAGATAAGAGAGTGAGATTG+TGG | - | chr1_4:8448889-8448908 | None:intergenic | 35.0% | |
| GAAGTCTTTCGAGATTTCAA+AGG | + | chr1_4:8448988-8449007 | Msa0148200:CDS | 35.0% | |
| AAAAAAAAGAGAAGACCGAC+CGG | - | chr1_4:8449046-8449065 | None:intergenic | 35.0% | |
| GTGTTGCATGTGTAACTATA+AGG | + | chr1_4:8449485-8449504 | Msa0148200:intron | 35.0% | |
| ATTGAGATGCTTCCCATAAA+TGG | - | chr1_4:8449633-8449652 | None:intergenic | 35.0% | |
| !! | TTTATGGGAAGCATCTCAAT+TGG | + | chr1_4:8449633-8449652 | Msa0148200:intron | 35.0% |
| GTGAGTCCAAAATGTTTGAT+TGG | + | chr1_4:8449707-8449726 | Msa0148200:intron | 35.0% | |
| TTAATGCCCAAAATACGTTG+CGG | + | chr1_4:8449951-8449970 | Msa0148200:intron | 35.0% | |
| CATCCATGTACGATGTATTA+AGG | + | chr1_4:8449979-8449998 | Msa0148200:intron | 35.0% | |
| TTACATCCCAAAAAGAGAAG+AGG | + | chr1_4:8450059-8450078 | Msa0148200:intron | 35.0% | |
| TACATCCCAAAAAGAGAAGA+GGG | + | chr1_4:8450060-8450079 | Msa0148200:intron | 35.0% | |
| ! | AATAGCCCTCTTCTCTTTTT+GGG | - | chr1_4:8450068-8450087 | None:intergenic | 35.0% |
| ! | AAATAGCCCTCTTCTCTTTT+TGG | - | chr1_4:8450069-8450088 | None:intergenic | 35.0% |
| AAAAGAGAAGAGGGCTATTT+AGG | + | chr1_4:8450069-8450088 | Msa0148200:intron | 35.0% | |
| TGTTCAGGAAGTTCATTTCT+TGG | + | chr1_4:8450131-8450150 | Msa0148200:intron | 35.0% | |
| GATCTGAATCTGATGTAGTA+TGG | + | chr1_4:8450183-8450202 | Msa0148200:intron | 35.0% | |
| GGTTGAACCTAAATATGATG+CGG | - | chr1_4:8450312-8450331 | None:intergenic | 35.0% | |
| ACATAAGCAACAACAAGTAC+GGG | - | chr1_4:8450333-8450352 | None:intergenic | 35.0% | |
| ! | TATTTTATCATAAGGTGGGG+TGG | - | chr1_4:8450359-8450378 | None:intergenic | 35.0% |
| AGATAGGCTTCAATAGATAG+TGG | + | chr1_4:8450605-8450624 | Msa0148200:intron | 35.0% | |
| !! | TCAATAGATAGTGGATGTGA+TGG | + | chr1_4:8450614-8450633 | Msa0148200:intron | 35.0% |
| TCACCCTTGAATATTGATAC+TGG | + | chr1_4:8450718-8450737 | Msa0148200:intron | 35.0% | |
| TTGATACTGGATTTAGTCTG+AGG | + | chr1_4:8450731-8450750 | Msa0148200:intron | 35.0% | |
| !! | GTCTGAGGTATCTATTTTCT+TGG | + | chr1_4:8450746-8450765 | Msa0148200:intron | 35.0% |
| ! | TGCTGCCTTATCTATTTTCT+TGG | + | chr1_4:8450924-8450943 | Msa0148200:intron | 35.0% |
| CTGTGGAACTTAAGCATATT+AGG | - | chr1_4:8450994-8451013 | None:intergenic | 35.0% | |
| GGTATTAACTTTGCTAGAGA+TGG | + | chr1_4:8451174-8451193 | Msa0148200:CDS | 35.0% | |
| TAGAGATGGAATGCAAGAAA+AGG | + | chr1_4:8451188-8451207 | Msa0148200:CDS | 35.0% | |
| ATGGAATGCAAGAAAAGGAT+TGG | + | chr1_4:8451193-8451212 | Msa0148200:CDS | 35.0% | |
| !! | AGAAAAGGATTGGCTATCTT+TGG | + | chr1_4:8451203-8451222 | Msa0148200:CDS | 35.0% |
| !!! | TTTTATTTCGGTGCTAGGTT+TGG | + | chr1_4:8451264-8451283 | Msa0148200:CDS | 35.0% |
| !! | CTATCTGCTATTTCACACAT+TGG | + | chr1_4:8451685-8451704 | Msa0148200:intron | 35.0% |
| !! | ATCTGCTATTTCACACATTG+GGG | + | chr1_4:8451687-8451706 | Msa0148200:intron | 35.0% |
| ! | TTTCACACATTGGGGATTTT+CGG | + | chr1_4:8451695-8451714 | Msa0148200:intron | 35.0% |
| GAAAGCAAACCATCAATGAA+TGG | - | chr1_4:8452106-8452125 | None:intergenic | 35.0% | |
| TGTACTTATCATCTCTTTGC+AGG | + | chr1_4:8452167-8452186 | Msa0148200:intron | 35.0% | |
| GCTTACCTTAGAGTTTGATT+TGG | - | chr1_4:8452308-8452327 | None:intergenic | 35.0% | |
| TGATACTAAGAGGACTTTGA+GGG | + | chr1_4:8452359-8452378 | Msa0148200:intron | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | - | chr1_4:8452621-8452640 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | - | chr1_4:8452627-8452646 | None:intergenic | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr1_4:8452773-8452792 | Msa0148200:intron | 35.0% |
| ! | GCCAAAGTTTTCAAAACCAA+TGG | + | chr1_4:8452826-8452845 | Msa0148200:CDS | 35.0% |
| !!! | GCCATTGGTTTTGAAAACTT+TGG | - | chr1_4:8452830-8452849 | None:intergenic | 35.0% |
| ! | GTTTTCAAAACCAATGGCAA+TGG | + | chr1_4:8452832-8452851 | Msa0148200:CDS | 35.0% |
| AAAATGCGTGAAGATTACTC+CGG | + | chr1_4:8453021-8453040 | Msa0148200:CDS | 35.0% | |
| TCCTATATCCATTGCTTCAA+GGG | - | chr1_4:8453105-8453124 | None:intergenic | 35.0% | |
| AATTCGGAACAATTCGATAG+TGG | - | chr1_4:8453247-8453266 | None:intergenic | 35.0% | |
| CTATCGAATTGTTCCGAATT+AGG | + | chr1_4:8453247-8453266 | Msa0148200:three_prime_UTR | 35.0% | |
| TAAGAGAGTGAGATTGTGGA+GGG | - | chr1_4:8448885-8448904 | None:intergenic | 40.0% | |
| ATAAGAGAGTGAGATTGTGG+AGG | - | chr1_4:8448886-8448905 | None:intergenic | 40.0% | |
| TCACTTCACAACAACAACCA+TGG | + | chr1_4:8448927-8448946 | Msa0148200:exon | 40.0% | |
| TTAATTAAAGCCCTCACCAC+CGG | + | chr1_4:8449024-8449043 | Msa0148200:CDS | 40.0% | |
| TGGTAGAATACATCGACATC+TGG | - | chr1_4:8449147-8449166 | None:intergenic | 40.0% | |
| TCTGATGTAGTATGGACTTC+TGG | + | chr1_4:8450191-8450210 | Msa0148200:intron | 40.0% | |
| CTGATGTAGTATGGACTTCT+GGG | + | chr1_4:8450192-8450211 | Msa0148200:intron | 40.0% | |
| !! | TTGTTGTATGATGGACCCAA+AGG | + | chr1_4:8450281-8450300 | Msa0148200:intron | 40.0% |
| ! | CTGGAAGTATGCAAGCATAT+CGG | - | chr1_4:8450492-8450511 | None:intergenic | 40.0% |
| TCATTTACGGCTTCAGAGAT+AGG | + | chr1_4:8450589-8450608 | Msa0148200:intron | 40.0% | |
| !!! | AATTTTGGCTACGATGCTTC+AGG | + | chr1_4:8450800-8450819 | Msa0148200:intron | 40.0% |
| TAACAGACAAGCTTCTATCG+TGG | - | chr1_4:8450858-8450877 | None:intergenic | 40.0% | |
| GAAAATAGATAAGGCAGCAC+AGG | - | chr1_4:8450923-8450942 | None:intergenic | 40.0% | |
| ! | AAGCATATTAGGTGCTGCAT+TGG | - | chr1_4:8450983-8451002 | None:intergenic | 40.0% |
| ! | CAAGCTTTGTGATACAGAGA+AGG | + | chr1_4:8451059-8451078 | Msa0148200:intron | 40.0% |
| GCAAAGTTAATACCCAATGC+TGG | - | chr1_4:8451168-8451187 | None:intergenic | 40.0% | |
| !!! | TGGCTTTTTATTTCGGTGCT+AGG | + | chr1_4:8451259-8451278 | Msa0148200:CDS | 40.0% |
| TGCTAGGTTTGGATTTGACA+AGG | + | chr1_4:8451275-8451294 | Msa0148200:CDS | 40.0% | |
| TTGGATTTGACAAGGCTGAT+AGG | + | chr1_4:8451283-8451302 | Msa0148200:CDS | 40.0% | |
| TTTACCCTTTCACAAAGCTG+CGG | + | chr1_4:8451318-8451337 | Msa0148200:intron | 40.0% | |
| !!! | GATAGTGTTGCTGTTTTCAG+AGG | - | chr1_4:8451670-8451689 | None:intergenic | 40.0% |
| TCAAAGGAAAACTAGTGGAG+AGG | + | chr1_4:8451767-8451786 | Msa0148200:intron | 40.0% | |
| !! | CAACAAACTTTTGAGAGGCA+GGG | - | chr1_4:8452057-8452076 | None:intergenic | 40.0% |
| ! | ACTGCCAACAAACTTTTGAG+AGG | - | chr1_4:8452062-8452081 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr1_4:8452112-8452131 | Msa0148200:intron | 40.0% |
| ! | TTTGAAGTTGTTACAGGGTC+TGG | + | chr1_4:8452229-8452248 | Msa0148200:CDS | 40.0% |
| CTCTTAGTATCAGCGAATAG+TGG | - | chr1_4:8452351-8452370 | None:intergenic | 40.0% | |
| CACTATTCGCTGATACTAAG+AGG | + | chr1_4:8452349-8452368 | Msa0148200:intron | 40.0% | |
| CTGATACTAAGAGGACTTTG+AGG | + | chr1_4:8452358-8452377 | Msa0148200:intron | 40.0% | |
| ! | TAAGAGGACTTTGAGGGATT+TGG | + | chr1_4:8452365-8452384 | Msa0148200:intron | 40.0% |
| GATTGAAAGGTGATCTCAGA+CGG | - | chr1_4:8452431-8452450 | None:intergenic | 40.0% | |
| AAATGACTCACGCTATGACT+TGG | + | chr1_4:8452457-8452476 | Msa0148200:intron | 40.0% | |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr1_4:8452613-8452632 | Msa0148200:intron | 40.0% |
| AACTGTGTCTGTTTCCTGAT+TGG | + | chr1_4:8452735-8452754 | Msa0148200:intron | 40.0% | |
| TGTCTGTTTCCTGATTGGTA+TGG | + | chr1_4:8452740-8452759 | Msa0148200:intron | 40.0% | |
| !!! | GGTTTTGAAAACTTTGGCTG+AGG | - | chr1_4:8452824-8452843 | None:intergenic | 40.0% |
| CTCCTATATCCATTGCTTCA+AGG | - | chr1_4:8453106-8453125 | None:intergenic | 40.0% | |
| ! | CTTGTTGTATGCACAACTCT+AGG | - | chr1_4:8453394-8453413 | None:intergenic | 40.0% |
| GTTGTGAGAGAGAGAGAGAA+TGG | - | chr1_4:8448800-8448819 | None:intergenic | 45.0% | |
| ACAACAACCATGGACGTTGT+AGG | + | chr1_4:8448937-8448956 | Msa0148200:exon | 45.0% | |
| AGACTTCTTCGACAGTACGA+GGG | - | chr1_4:8448975-8448994 | None:intergenic | 45.0% | |
| AAGACTTCTTCGACAGTACG+AGG | - | chr1_4:8448976-8448995 | None:intergenic | 45.0% | |
| ! | GCAATGCCGCAACGTATTTT+GGG | - | chr1_4:8449960-8449979 | None:intergenic | 45.0% |
| ! | TGCAATGCCGCAACGTATTT+TGG | - | chr1_4:8449961-8449980 | None:intergenic | 45.0% |
| TATGATGCGGCGTAACCTTT+GGG | - | chr1_4:8450299-8450318 | None:intergenic | 45.0% | |
| ATATGATGCGGCGTAACCTT+TGG | - | chr1_4:8450300-8450319 | None:intergenic | 45.0% | |
| GGTTACGCCGCATCATATTT+AGG | + | chr1_4:8450302-8450321 | Msa0148200:intron | 45.0% | |
| TAAATCTTATGCAGCAGCGC+TGG | - | chr1_4:8450511-8450530 | None:intergenic | 45.0% | |
| !! | TTAATACCCAATGCTGGCTC+TGG | - | chr1_4:8451162-8451181 | None:intergenic | 45.0% |
| TTGCAGTACACAGTGATGCT+TGG | + | chr1_4:8451226-8451245 | Msa0148200:CDS | 45.0% | |
| ! | TGATGCTTGGTTGCTTTCTG+TGG | + | chr1_4:8451239-8451258 | Msa0148200:CDS | 45.0% |
| ! | GCAGCTTTGTGAAAGGGTAA+AGG | - | chr1_4:8451319-8451338 | None:intergenic | 45.0% |
| ! | AAAGCCGCAGCTTTGTGAAA+GGG | - | chr1_4:8451325-8451344 | None:intergenic | 45.0% |
| ! | TAAAGCCGCAGCTTTGTGAA+AGG | - | chr1_4:8451326-8451345 | None:intergenic | 45.0% |
| !! | CCAACAAACTTTTGAGAGGC+AGG | - | chr1_4:8452058-8452077 | None:intergenic | 45.0% |
| CCTGCCTCTCAAAAGTTTGT+TGG | + | chr1_4:8452055-8452074 | Msa0148200:intron | 45.0% | |
| ! | TAGTCTAGTTTGCATGACCG+TGG | + | chr1_4:8452565-8452584 | Msa0148200:intron | 45.0% |
| AAGGATTCACACATGTGCCA+CGG | - | chr1_4:8452585-8452604 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+AGG | + | chr1_4:8452591-8452610 | Msa0148200:intron | 45.0% | |
| ! | ACTTTCTAGCGCCATAGAGA+GGG | - | chr1_4:8452702-8452721 | None:intergenic | 45.0% |
| ATCTGCATTGCCATTGCCAT+TGG | - | chr1_4:8452845-8452864 | None:intergenic | 45.0% | |
| GATGAGGTTGAGGATGAAGA+TGG | + | chr1_4:8452875-8452894 | Msa0148200:CDS | 45.0% | |
| GTTGAGGATGAAGATGGTGT+AGG | + | chr1_4:8452881-8452900 | Msa0148200:CDS | 45.0% | |
| GAGGAAGATGAGGAAGAACA+CGG | + | chr1_4:8452911-8452930 | Msa0148200:CDS | 45.0% | |
| AACACGGAGAGACTTTGTGT+GGG | + | chr1_4:8452927-8452946 | Msa0148200:CDS | 45.0% | |
| GCTGCGACATATGTGAGAAA+TGG | + | chr1_4:8452990-8453009 | Msa0148200:CDS | 45.0% | |
| GCCCTTGAAGCAATGGATAT+AGG | + | chr1_4:8453101-8453120 | Msa0148200:exon | 45.0% | |
| !! | TATGCACAACTCTAGGACTC+GGG | - | chr1_4:8453387-8453406 | None:intergenic | 45.0% |
| !! | GTATGCACAACTCTAGGACT+CGG | - | chr1_4:8453388-8453407 | None:intergenic | 45.0% |
| !!! | AATTTTTTTTACAAAAAAAT+AGG | - | chr1_4:8449091-8449110 | None:intergenic | 5.0% |
| !! | AAATAAACAAATTAAAAATA+CGG | - | chr1_4:8449323-8449342 | None:intergenic | 5.0% |
| TCGACAGTACGAGGGTTGTA+CGG | - | chr1_4:8448967-8448986 | None:intergenic | 50.0% | |
| AAAAAGAGAAGACCGACCGG+TGG | - | chr1_4:8449043-8449062 | None:intergenic | 50.0% | |
| TTCTACCAGCAGTGTGATCC+CGG | + | chr1_4:8449159-8449178 | Msa0148200:CDS | 50.0% | |
| TATTACCGGGATCACACTGC+TGG | - | chr1_4:8449167-8449186 | None:intergenic | 50.0% | |
| GGTGGGTCATAACAAGAAGC+TGG | + | chr1_4:8449840-8449859 | Msa0148200:intron | 50.0% | |
| TGCTGTTGCTGCGTTTGTCA+TGG | + | chr1_4:8450386-8450405 | Msa0148200:intron | 50.0% | |
| GCTCGCTCGGAAATCCATAA+AGG | - | chr1_4:8451095-8451114 | None:intergenic | 50.0% | |
| GCGGCTTTACTCTGCTCAAT+AGG | + | chr1_4:8451337-8451356 | Msa0148200:intron | 50.0% | |
| ! | ATTGGGGATTTTCGGCGTTC+TGG | + | chr1_4:8451703-8451722 | Msa0148200:intron | 50.0% |
| AAGTTGTTACAGGGTCTGGC+AGG | + | chr1_4:8452233-8452252 | Msa0148200:CDS | 50.0% | |
| GTCTGGCAGGAAACAAGGAA+AGG | + | chr1_4:8452246-8452265 | Msa0148200:CDS | 50.0% | |
| GATTTGGATTCCCTGCAGTC+TGG | + | chr1_4:8452381-8452400 | Msa0148200:intron | 50.0% | |
| CCATGGATATCCAGACTGCA+GGG | - | chr1_4:8452394-8452413 | None:intergenic | 50.0% | |
| ACCATGGATATCCAGACTGC+AGG | - | chr1_4:8452395-8452414 | None:intergenic | 50.0% | |
| ! | AGAAAGTGTGTCGTCTCGTC+TGG | + | chr1_4:8452504-8452523 | Msa0148200:intron | 50.0% |
| ATTCGGATCTCCTGCAGCAA+AGG | - | chr1_4:8452604-8452623 | None:intergenic | 50.0% | |
| ! | GACTTTCTAGCGCCATAGAG+AGG | - | chr1_4:8452703-8452722 | None:intergenic | 50.0% |
| GGCAATGCAGATGCAGTCAA+AGG | + | chr1_4:8452853-8452872 | Msa0148200:CDS | 50.0% | |
| GCAGATGCAGTCAAAGGATG+AGG | + | chr1_4:8452859-8452878 | Msa0148200:CDS | 50.0% | |
| GCAGTCAAAGGATGAGGTTG+AGG | + | chr1_4:8452865-8452884 | Msa0148200:CDS | 50.0% | |
| GGATGAAGATGGTGTAGGTG+TGG | + | chr1_4:8452886-8452905 | Msa0148200:CDS | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | + | chr1_4:8452926-8452945 | Msa0148200:CDS | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | + | chr1_4:8452928-8452947 | Msa0148200:CDS | 50.0% | |
| CGTGAAGATTACTCCGGCAA+GGG | + | chr1_4:8453027-8453046 | Msa0148200:CDS | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | - | chr1_4:8453043-8453062 | None:intergenic | 50.0% | |
| TTAAAGCCCTCACCACCGGT+CGG | + | chr1_4:8449028-8449047 | Msa0148200:intron | 55.0% | |
| ATGGATTTCCGAGCGAGCAG+TGG | + | chr1_4:8451097-8451116 | Msa0148200:CDS | 55.0% | |
| TGGATTTCCGAGCGAGCAGT+GGG | + | chr1_4:8451098-8451117 | Msa0148200:CDS | 55.0% | |
| !! | AATGCTGGCTCTGGAAGCTC+AGG | - | chr1_4:8451153-8451172 | None:intergenic | 55.0% |
| TGAGCTTCCAGAGCCAGCAT+TGG | + | chr1_4:8451152-8451171 | Msa0148200:CDS | 55.0% | |
| GAGCTTCCAGAGCCAGCATT+GGG | + | chr1_4:8451153-8451172 | Msa0148200:CDS | 55.0% | |
| GTCGTAGACACGTGTGCAGT+TGG | + | chr1_4:8451798-8451817 | Msa0148200:intron | 55.0% | |
| ACAGGGTCTGGCAGGAAACA+AGG | + | chr1_4:8452241-8452260 | Msa0148200:CDS | 55.0% | |
| CCCTGCAGTCTGGATATCCA+TGG | + | chr1_4:8452391-8452410 | Msa0148200:intron | 55.0% | |
| CGGTGCAGATTGCTTGACCA+TGG | - | chr1_4:8452411-8452430 | None:intergenic | 55.0% | |
| AGATGGTGTAGGTGTGGACG+AGG | + | chr1_4:8452892-8452911 | Msa0148200:CDS | 55.0% | |
| AGGTGTGGACGAGGAAGATG+AGG | + | chr1_4:8452901-8452920 | Msa0148200:CDS | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | + | chr1_4:8452935-8452954 | Msa0148200:CDS | 55.0% | |
| GCTATGCAGCTGACGAGTTC+TGG | + | chr1_4:8452963-8452982 | Msa0148200:CDS | 55.0% | |
| GCGTGAAGATTACTCCGGCA+AGG | + | chr1_4:8453026-8453045 | Msa0148200:CDS | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | - | chr1_4:8453079-8453098 | None:intergenic | 55.0% | |
| AGAGCTCGCCCTTGAAGCAA+TGG | + | chr1_4:8453094-8453113 | Msa0148200:exon | 55.0% | |
| ! | CGGAGCACCTACAACGTCCA+TGG | - | chr1_4:8448947-8448966 | None:intergenic | 60.0% |
| AGAAGACCGACCGGTGGTGA+GGG | - | chr1_4:8449037-8449056 | None:intergenic | 60.0% | |
| ATTTCCGAGCGAGCAGTGGG+AGG | + | chr1_4:8451101-8451120 | Msa0148200:CDS | 60.0% | |
| TTCACCTCCCACTGCTCGCT+CGG | - | chr1_4:8451108-8451127 | None:intergenic | 60.0% | |
| GGAGGTGAATCTGCCAGCTG+AGG | + | chr1_4:8451119-8451138 | Msa0148200:CDS | 60.0% | |
| !! | CAACTCTAGGACTCGGGTGG+TGG | - | chr1_4:8453381-8453400 | None:intergenic | 60.0% |
| !! | GCACAACTCTAGGACTCGGG+TGG | - | chr1_4:8453384-8453403 | None:intergenic | 60.0% |
| GAGAAGACCGACCGGTGGTG+AGG | - | chr1_4:8449038-8449057 | None:intergenic | 65.0% | |
| TCAGGCGGCACTTCCTCAGC+TGG | - | chr1_4:8451135-8451154 | None:intergenic | 65.0% | |
| !! | GCTGGCTCTGGAAGCTCAGG+CGG | - | chr1_4:8451150-8451169 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8448780 | 8453419 | 8448780 | ID=Msa0148200;Name=Msa0148200 |
| chr1_4 | mRNA | 8448780 | 8453419 | 8448780 | ID=Msa0148200-mRNA-1;Parent=Msa0148200;Name=Msa0148200-mRNA-1;_AED=0.20;_eAED=0.20;_QI=166|1|1|1|1|1|5|311|264 |
| chr1_4 | exon | 8448780 | 8449045 | 8448780 | ID=Msa0148200-mRNA-1:exon:3620;Parent=Msa0148200-mRNA-1 |
| chr1_4 | exon | 8449148 | 8449180 | 8449148 | ID=Msa0148200-mRNA-1:exon:3621;Parent=Msa0148200-mRNA-1 |
| chr1_4 | exon | 8451076 | 8451304 | 8451076 | ID=Msa0148200-mRNA-1:exon:3622;Parent=Msa0148200-mRNA-1 |
| chr1_4 | exon | 8452189 | 8452321 | 8452189 | ID=Msa0148200-mRNA-1:exon:3623;Parent=Msa0148200-mRNA-1 |
| chr1_4 | exon | 8452809 | 8453419 | 8452809 | ID=Msa0148200-mRNA-1:exon:3624;Parent=Msa0148200-mRNA-1 |
| chr1_4 | five_prime_UTR | 8448780 | 8448945 | 8448780 | ID=Msa0148200-mRNA-1:five_prime_utr;Parent=Msa0148200-mRNA-1 |
| chr1_4 | CDS | 8448946 | 8449045 | 8448946 | ID=Msa0148200-mRNA-1:cds;Parent=Msa0148200-mRNA-1 |
| chr1_4 | CDS | 8449148 | 8449180 | 8449148 | ID=Msa0148200-mRNA-1:cds;Parent=Msa0148200-mRNA-1 |
| chr1_4 | CDS | 8451076 | 8451304 | 8451076 | ID=Msa0148200-mRNA-1:cds;Parent=Msa0148200-mRNA-1 |
| chr1_4 | CDS | 8452189 | 8452321 | 8452189 | ID=Msa0148200-mRNA-1:cds;Parent=Msa0148200-mRNA-1 |
| chr1_4 | CDS | 8452809 | 8453108 | 8452809 | ID=Msa0148200-mRNA-1:cds;Parent=Msa0148200-mRNA-1 |
| chr1_4 | three_prime_UTR | 8453109 | 8453419 | 8453109 | ID=Msa0148200-mRNA-1:three_prime_utr;Parent=Msa0148200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
