Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100280 | sp|A0A072VEP0|CHT5A_MEDTR | 95.337 | 386 | 16 | 1 | 1 | 386 | 1 | 384 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100280 | A0A2K3NGX0 | 86.253 | 371 | 48 | 2 | 16 | 386 | 1 | 368 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100280 | Msa0144520 | 0.866770 | 2.236699e-65 | -8.615850e-47 |
| Msa0100280 | Msa1337000 | 0.863548 | 2.301488e-64 | -8.615850e-47 |
| Msa0100280 | Msa1359410 | 0.922218 | 1.307513e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100280 | MtrunA17_Chr1g0149821 | 95.337 | 386 | 16 | 1 | 1 | 386 | 1 | 384 | 0.0 | 743 |
| Msa0100280 | MtrunA17_Chr4g0065511 | 47.384 | 344 | 178 | 2 | 42 | 384 | 35 | 376 | 4.10e-109 | 325 |
| Msa0100280 | MtrunA17_Chr4g0065501 | 49.138 | 348 | 170 | 3 | 42 | 384 | 37 | 382 | 1.99e-105 | 315 |
| Msa0100280 | MtrunA17_Chr3g0140461 | 36.975 | 357 | 207 | 5 | 34 | 385 | 47 | 390 | 9.24e-67 | 217 |
| Msa0100280 | MtrunA17_Chr3g0140491 | 35.393 | 356 | 213 | 5 | 34 | 385 | 22 | 364 | 1.33e-64 | 210 |
| Msa0100280 | MtrunA17_Chr4g0065561 | 35.484 | 372 | 221 | 5 | 13 | 380 | 8 | 364 | 1.93e-61 | 211 |
| Msa0100280 | MtrunA17_Chr4g0065531 | 32.880 | 368 | 228 | 4 | 13 | 377 | 8 | 359 | 3.99e-56 | 188 |
| Msa0100280 | MtrunA17_Chr4g0065541 | 33.041 | 342 | 220 | 3 | 42 | 380 | 21 | 356 | 1.44e-51 | 183 |
| Msa0100280 | MtrunA17_Chr4g0065451 | 39.161 | 143 | 79 | 2 | 242 | 384 | 19 | 153 | 8.59e-25 | 99.0 |
| Msa0100280 | MtrunA17_Chr4g0065461 | 36.842 | 114 | 67 | 2 | 39 | 149 | 28 | 139 | 1.50e-16 | 75.9 |
| Msa0100280 | MtrunA17_Chr4g0066051 | 28.387 | 155 | 111 | 0 | 42 | 196 | 28 | 182 | 1.36e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100280 | AT4G19810.2 | 41.159 | 345 | 195 | 3 | 42 | 384 | 28 | 366 | 2.35e-87 | 270 |
| Msa0100280 | AT4G19810.1 | 41.159 | 345 | 195 | 3 | 42 | 384 | 28 | 366 | 2.35e-87 | 270 |
| Msa0100280 | AT4G19800.1 | 40.469 | 341 | 196 | 2 | 42 | 381 | 7 | 341 | 4.78e-82 | 256 |
| Msa0100280 | AT4G19820.1 | 37.971 | 345 | 206 | 3 | 42 | 384 | 26 | 364 | 7.65e-77 | 242 |
| Msa0100280 | AT4G19750.1 | 37.465 | 355 | 209 | 6 | 34 | 381 | 4 | 352 | 9.35e-71 | 226 |
| Msa0100280 | AT4G19760.1 | 37.500 | 368 | 207 | 7 | 34 | 384 | 4 | 365 | 1.13e-70 | 226 |
| Msa0100280 | AT4G19720.1 | 35.674 | 356 | 205 | 5 | 42 | 384 | 6 | 350 | 1.56e-66 | 215 |
| Msa0100280 | AT4G19730.1 | 36.923 | 325 | 185 | 6 | 42 | 352 | 14 | 332 | 3.27e-59 | 195 |
| Msa0100280 | AT4G19770.1 | 39.080 | 261 | 152 | 2 | 123 | 382 | 1 | 255 | 7.79e-55 | 182 |
| Msa0100280 | AT4G19740.1 | 37.755 | 196 | 113 | 4 | 145 | 338 | 23 | 211 | 9.82e-30 | 114 |
Find 110 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATAATAACACCAATTT+TGG | 0.129479 | 1_3:-6803466 | Msa0100280:CDS |
| TCCGAAATTAGTACCAATTT+TGG | 0.140026 | 1_3:-6802736 | Msa0100280:CDS |
| AACATGTCTTGTTGAGTTTC+AGG | 0.150216 | 1_3:+6803015 | None:intergenic |
| GTTTGAAAGGCTATTTCTTT+TGG | 0.192066 | 1_3:-6802405 | Msa0100280:CDS |
| ATCCACGTGGCAAGAAAATA+TGG | 0.199050 | 1_3:-6803069 | Msa0100280:CDS |
| TCCAAAATTGGTACTAATTT+CGG | 0.232381 | 1_3:+6802735 | None:intergenic |
| ATTTCAAGTTTGAAGGAAAT+TGG | 0.266881 | 1_3:+6803258 | None:intergenic |
| CGGGGTGGGAGCGGAGGCGG+TGG | 0.269593 | 1_3:-6802614 | Msa0100280:CDS |
| GTTATGGGTTTGGCTTTATA+TGG | 0.270864 | 1_3:-6802670 | Msa0100280:CDS |
| TGATTGGTGATGTTGGAAAT+TGG | 0.302533 | 1_3:+6803591 | None:intergenic |
| CAACGGGGTGGGAGCGGAGG+CGG | 0.330744 | 1_3:-6802617 | Msa0100280:CDS |
| TTTACTACAATTCTACAATA+AGG | 0.331782 | 1_3:-6802900 | Msa0100280:CDS |
| TTGATGGTGTTGACTTGGAT+TGG | 0.339296 | 1_3:-6803044 | Msa0100280:CDS |
| CCATGAGTGGAGTCCAAAAT+TGG | 0.343332 | 1_3:+6802723 | None:intergenic |
| GCTCCCACCCCGTTGACATT+TGG | 0.345635 | 1_3:+6802625 | None:intergenic |
| TAACTTTGTATCAATTATAA+AGG | 0.353027 | 1_3:+6801746 | None:intergenic |
| CGACCTGAAAAGTTGGTTAT+GGG | 0.357426 | 1_3:-6802685 | Msa0100280:CDS |
| TGAAAAGTTGGTTATGGGTT+TGG | 0.358876 | 1_3:-6802680 | Msa0100280:CDS |
| GGTTCGGTTCGCTAAGTCCT+TGG | 0.378994 | 1_3:-6802428 | Msa0100280:CDS |
| AGTTTGAAGGAAATTGGTTC+TGG | 0.383577 | 1_3:+6803264 | None:intergenic |
| TCGACCTGAAAAGTTGGTTA+TGG | 0.384573 | 1_3:-6802686 | Msa0100280:CDS |
| TGATGGTGTTGACTTGGATT+GGG | 0.393541 | 1_3:-6803043 | Msa0100280:CDS |
| AATTCTACAATAAGGCATAT+TGG | 0.394165 | 1_3:-6802892 | Msa0100280:CDS |
| TGTATCAATTATAAAGGTCT+AGG | 0.402017 | 1_3:+6801752 | None:intergenic |
| TGATGATACATTGAAGAAAA+TGG | 0.402523 | 1_3:+6803431 | None:intergenic |
| CTACCATCCGTGTCAGTTGC+AGG | 0.408728 | 1_3:+6802589 | None:intergenic |
| TGGCTTTATATGGACGGGCG+TGG | 0.410489 | 1_3:-6802660 | Msa0100280:CDS |
| ATTCTTATGCGAGTACTACT+TGG | 0.411139 | 1_3:-6802486 | Msa0100280:CDS |
| TCACCGGCGGGGAACGGTGG+CGG | 0.416311 | 1_3:+6803190 | None:intergenic |
| CTATCAATAAGTACTTAGAT+TGG | 0.421164 | 1_3:-6802837 | Msa0100280:CDS |
| TTGGGCCCTTGGGAAGGATA+AGG | 0.422516 | 1_3:-6802386 | Msa0100280:CDS |
| AAACTTGAAATCACAAAATC+CGG | 0.429982 | 1_3:-6803246 | Msa0100280:CDS |
| TGAAGGATCCAAATGTCAAC+GGG | 0.437680 | 1_3:-6802633 | Msa0100280:CDS |
| GTTCGGTTCGCTAAGTCCTT+GGG | 0.446920 | 1_3:-6802427 | Msa0100280:CDS |
| ACATGGTCCGAGATCGTATC+CGG | 0.447523 | 1_3:-6802866 | Msa0100280:CDS |
| GGCTTTATATGGACGGGCGT+GGG | 0.454743 | 1_3:-6802659 | Msa0100280:CDS |
| GGTACGTGGGATAATAATAC+TGG | 0.460041 | 1_3:-6802787 | Msa0100280:CDS |
| TATTGTAGAATTGTAGTAAA+CGG | 0.462540 | 1_3:+6802903 | None:intergenic |
| CGAACCTTAGCCGTTATTGA+AGG | 0.463955 | 1_3:+6802445 | None:intergenic |
| ACTCCACTCATGGATCAAAT+CGG | 0.467968 | 1_3:-6802713 | Msa0100280:CDS |
| AAATGTCAACGGGGTGGGAG+CGG | 0.470085 | 1_3:-6802623 | Msa0100280:CDS |
| AATGCTATTAAAATTAAGTA+AGG | 0.482276 | 1_3:+6801599 | None:intergenic |
| TGGGTTTGGCTTTATATGGA+CGG | 0.486221 | 1_3:-6802666 | Msa0100280:CDS |
| CTTCAATAACGGCTAAGGTT+CGG | 0.486769 | 1_3:-6802444 | Msa0100280:CDS |
| TGTTTGCTGAAGCCAAGGTT+AGG | 0.488465 | 1_3:-6802954 | Msa0100280:CDS |
| TGTTTGCAGCTTCAAATGCA+TGG | 0.493710 | 1_3:-6801812 | Msa0100280:intron |
| GTTTGCAGCTTCAAATGCAT+GGG | 0.495180 | 1_3:-6801811 | Msa0100280:intron |
| TGGGTTTGATGGTGTTGACT+TGG | 0.495194 | 1_3:-6803049 | Msa0100280:CDS |
| TGCTTTGTTTGCTGAAGCCA+AGG | 0.495351 | 1_3:-6802959 | Msa0100280:CDS |
| TGTCAACGGGGTGGGAGCGG+AGG | 0.495432 | 1_3:-6802620 | Msa0100280:CDS |
| TATCAATAAGTACTTAGATT+GGG | 0.495623 | 1_3:-6802836 | Msa0100280:CDS |
| GGGTTTGGCTTTATATGGAC+GGG | 0.497020 | 1_3:-6802665 | Msa0100280:CDS |
| CTCCACTCATGGATCAAATC+GGG | 0.499458 | 1_3:-6802712 | Msa0100280:CDS |
| CAACAAGACATGTTTAACCT+TGG | 0.500039 | 1_3:-6803006 | Msa0100280:CDS |
| GCAAGAAAATATGGGTTTGA+TGG | 0.503864 | 1_3:-6803060 | Msa0100280:CDS |
| TTGGTTTGTTGTACGAGGAA+TGG | 0.511153 | 1_3:-6802987 | Msa0100280:CDS |
| TTGAAGTTTAATAAAGAGAG+TGG | 0.514869 | 1_3:-6802547 | Msa0100280:CDS |
| AGATCAGCATATTGGCCAGC+AGG | 0.522729 | 1_3:-6803354 | Msa0100280:CDS |
| GCTAAGTCCTTGGGTTTGAA+AGG | 0.525269 | 1_3:-6802418 | Msa0100280:CDS |
| TGGACGGGCGTGGGAGCTGA+AGG | 0.529639 | 1_3:-6802650 | Msa0100280:CDS |
| ATGGTGTTAGATCAGCATAT+TGG | 0.535251 | 1_3:-6803362 | Msa0100280:CDS |
| TACTTATTGATAGCTTGAGC+CGG | 0.537112 | 1_3:+6802847 | None:intergenic |
| ATGCGAGTACTACTTGGATC+GGG | 0.538766 | 1_3:-6802480 | Msa0100280:CDS |
| TCCACGTGGCAAGAAAATAT+GGG | 0.538797 | 1_3:-6803068 | Msa0100280:CDS |
| GCTTGAGCCGGATACGATCT+CGG | 0.541555 | 1_3:+6802859 | None:intergenic |
| AATCCAATAATAAAAGTCAA+GGG | 0.544652 | 1_3:+6803715 | None:intergenic |
| TGATGACGGGCCTTCAATAA+CGG | 0.548821 | 1_3:-6802455 | Msa0100280:CDS |
| GAATCCAATAATAAAAGTCA+AGG | 0.549027 | 1_3:+6803714 | None:intergenic |
| CTTGGATCGGGTATGATGAC+GGG | 0.552269 | 1_3:-6802468 | Msa0100280:CDS |
| ACTTGGATCGGGTATGATGA+CGG | 0.552521 | 1_3:-6802469 | Msa0100280:CDS |
| TCCAATCCTTATCCTTCCCA+AGG | 0.552810 | 1_3:+6802380 | None:intergenic |
| TGCTAATGTTGTGTATGATA+AGG | 0.556900 | 1_3:-6802524 | Msa0100280:CDS |
| CTATGATGAGGGATAAGTGA+TGG | 0.560785 | 1_3:+6803652 | None:intergenic |
| CCCTTGGGAAGGATAAGGAT+TGG | 0.562576 | 1_3:-6802381 | Msa0100280:CDS |
| CGGGCCTTCAATAACGGCTA+AGG | 0.563983 | 1_3:-6802449 | Msa0100280:CDS |
| GATCCAAATGTCAACGGGGT+GGG | 0.564298 | 1_3:-6802628 | Msa0100280:CDS |
| TATGCGAGTACTACTTGGAT+CGG | 0.565120 | 1_3:-6802481 | Msa0100280:CDS |
| GAAATAGCCTTTCAAACCCA+AGG | 0.570698 | 1_3:+6802411 | None:intergenic |
| GTTCTGGTTGAATGAAAGCA+AGG | 0.575522 | 1_3:+6803280 | None:intergenic |
| GGGGTGGGAGCGGAGGCGGT+GGG | 0.578698 | 1_3:-6802613 | Msa0100280:CDS |
| CTGAAGGATCCAAATGTCAA+CGG | 0.582001 | 1_3:-6802634 | Msa0100280:CDS |
| TAGTTTGTGTCAATCAAAGA+AGG | 0.588638 | 1_3:+6803318 | None:intergenic |
| GGGTGTTCGACCTGAAAAGT+TGG | 0.591114 | 1_3:-6802692 | Msa0100280:CDS |
| AAGTAAGGACTAATCTTACA+AGG | 0.601153 | 1_3:+6801614 | None:intergenic |
| GTTTCGATTATCACGGTACG+TGG | 0.604563 | 1_3:-6802801 | Msa0100280:CDS |
| ACTCCGCCACCGTTCCCCGC+CGG | 0.609308 | 1_3:-6803193 | Msa0100280:CDS |
| CCAATCCTTATCCTTCCCAA+GGG | 0.616123 | 1_3:+6802381 | None:intergenic |
| TGAACGGTTCAACTATGATG+AGG | 0.616718 | 1_3:+6803640 | None:intergenic |
| TAACCTTGGTTTGTTGTACG+AGG | 0.617085 | 1_3:-6802992 | Msa0100280:CDS |
| GGTGGGACCTGCAACTGACA+CGG | 0.621426 | 1_3:-6802596 | Msa0100280:CDS |
| ATCCAATAATAAAAGTCAAG+GGG | 0.621819 | 1_3:+6803716 | None:intergenic |
| ATAAGGCATATTGGTAAACA+TGG | 0.622291 | 1_3:-6802883 | Msa0100280:CDS |
| TTGAATTGTTGTGAATTGAA+CGG | 0.622954 | 1_3:+6803624 | None:intergenic |
| GCATATATATAGAGAACAAG+TGG | 0.623772 | 1_3:+6803545 | None:intergenic |
| CCAATGTGTTTCGATTATCA+CGG | 0.625563 | 1_3:-6802808 | Msa0100280:CDS |
| GGATCCAAATGTCAACGGGG+TGG | 0.627972 | 1_3:-6802629 | Msa0100280:CDS |
| GAACGGTTCAACTATGATGA+GGG | 0.630645 | 1_3:+6803641 | None:intergenic |
| AGAATTGTAGTAAACGGCAG+AGG | 0.632126 | 1_3:+6802909 | None:intergenic |
| TTTGCAGCTTCAAATGCATG+GGG | 0.637832 | 1_3:-6801810 | Msa0100280:intron |
| CACCCGATTTGATCCATGAG+TGG | 0.643006 | 1_3:+6802710 | None:intergenic |
| CCGTGATAATCGAAACACAT+TGG | 0.644242 | 1_3:+6802808 | None:intergenic |
| GATTGGACCATCTCAAAACA+AGG | 0.657312 | 1_3:-6802364 | Msa0100280:intron |
| GGACCTGCAACTGACACGGA+TGG | 0.660097 | 1_3:-6802592 | Msa0100280:CDS |
| ATATATATGATCATAAACCA+TGG | 0.667935 | 1_3:-6803499 | Msa0100280:exon |
| ATTCCTCGTACAACAAACCA+AGG | 0.669048 | 1_3:+6802989 | None:intergenic |
| TTTCGATTATCACGGTACGT+GGG | 0.671850 | 1_3:-6802800 | Msa0100280:CDS |
| AAGGGAACAAAAGTTGAACA+AGG | 0.674562 | 1_3:+6803692 | None:intergenic |
| GCAGAGGTCAAAAGTAAACG+TGG | 0.725267 | 1_3:+6802925 | None:intergenic |
| TATAAATTCAACAATCCACG+TGG | 0.728895 | 1_3:-6803082 | Msa0100280:CDS |
| GAAGGATCCAAATGTCAACG+GGG | 0.809484 | 1_3:-6802632 | Msa0100280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATAAATATATTAT+TGG | - | chr1_3:6803173-6803192 | Msa0100280:CDS | 0.0% |
| !!! | TTTTTAAATAAATATATTAT+TGG | - | chr1_3:6803173-6803192 | Msa0100280:CDS | 0.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | chr1_3:6801733-6801752 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | chr1_3:6803089-6803108 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | chr1_3:6803114-6803133 | Msa0100280:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | chr1_3:6803562-6803581 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+GGG | + | chr1_3:6803608-6803627 | None:intergenic | 15.0% |
| !! | TAATACTATTCAAAAATATG+AGG | + | chr1_3:6803609-6803628 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | chr1_3:6803634-6803653 | Msa0100280:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | chr1_3:6803635-6803654 | Msa0100280:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_3:6803709-6803728 | None:intergenic | 15.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | chr1_3:6801733-6801752 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | chr1_3:6803089-6803108 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | chr1_3:6803114-6803133 | Msa0100280:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | chr1_3:6803562-6803581 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+GGG | + | chr1_3:6803608-6803627 | None:intergenic | 15.0% |
| !! | TAATACTATTCAAAAATATG+AGG | + | chr1_3:6803609-6803628 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | chr1_3:6803634-6803653 | Msa0100280:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | chr1_3:6803635-6803654 | Msa0100280:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_3:6803709-6803728 | None:intergenic | 15.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | chr1_3:6801806-6801825 | Msa0100280:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | chr1_3:6801832-6801851 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | chr1_3:6801836-6801855 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | chr1_3:6801839-6801858 | Msa0100280:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | chr1_3:6801924-6801943 | Msa0100280:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | chr1_3:6801932-6801951 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | chr1_3:6802405-6802424 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | chr1_3:6802405-6802424 | Msa0100280:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | chr1_3:6802469-6802488 | Msa0100280:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | chr1_3:6803349-6803368 | None:intergenic | 20.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | chr1_3:6801806-6801825 | Msa0100280:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | chr1_3:6801832-6801851 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | chr1_3:6801836-6801855 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | chr1_3:6801839-6801858 | Msa0100280:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | chr1_3:6801924-6801943 | Msa0100280:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | chr1_3:6801932-6801951 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | chr1_3:6802405-6802424 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | chr1_3:6802405-6802424 | Msa0100280:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | chr1_3:6802469-6802488 | Msa0100280:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | chr1_3:6803349-6803368 | None:intergenic | 20.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | chr1_3:6801684-6801703 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | chr1_3:6801877-6801896 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | chr1_3:6802050-6802069 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | chr1_3:6802057-6802076 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | chr1_3:6802059-6802078 | Msa0100280:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | chr1_3:6802134-6802153 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | chr1_3:6802134-6802153 | Msa0100280:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | chr1_3:6802137-6802156 | Msa0100280:intron | 25.0% |
| ! | AATTCTACAATAAGGCATAT+TGG | - | chr1_3:6802413-6802432 | Msa0100280:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | chr1_3:6802468-6802487 | Msa0100280:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | chr1_3:6802573-6802592 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | chr1_3:6802758-6802777 | Msa0100280:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | chr1_3:6802901-6802920 | Msa0100280:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | chr1_3:6803297-6803316 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | chr1_3:6803375-6803394 | Msa0100280:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | chr1_3:6803396-6803415 | Msa0100280:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | chr1_3:6803556-6803575 | None:intergenic | 25.0% |
| ! | GAATCCAATAATAAAAGTCA+AGG | + | chr1_3:6801594-6801613 | None:intergenic | 25.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | chr1_3:6801684-6801703 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | chr1_3:6801877-6801896 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | chr1_3:6802050-6802069 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | chr1_3:6802057-6802076 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | chr1_3:6802059-6802078 | Msa0100280:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | chr1_3:6802134-6802153 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | chr1_3:6802134-6802153 | Msa0100280:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | chr1_3:6802137-6802156 | Msa0100280:intron | 25.0% |
| ! | AATTCTACAATAAGGCATAT+TGG | - | chr1_3:6802413-6802432 | Msa0100280:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | chr1_3:6802468-6802487 | Msa0100280:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | chr1_3:6802573-6802592 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | chr1_3:6802758-6802777 | Msa0100280:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | chr1_3:6802901-6802920 | Msa0100280:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | chr1_3:6803297-6803316 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | chr1_3:6803375-6803394 | Msa0100280:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | chr1_3:6803396-6803415 | Msa0100280:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | chr1_3:6803556-6803575 | None:intergenic | 25.0% |
| GAGAGAAAAATCAAAGACAA+GGG | + | chr1_3:6801634-6801653 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | chr1_3:6801724-6801743 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | chr1_3:6801763-6801782 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | chr1_3:6801855-6801874 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | chr1_3:6801990-6802009 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | chr1_3:6802223-6802242 | Msa0100280:intron | 30.0% | |
| ATAAGGCATATTGGTAAACA+TGG | - | chr1_3:6802422-6802441 | Msa0100280:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | chr1_3:6802569-6802588 | Msa0100280:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | - | chr1_3:6802781-6802800 | Msa0100280:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | chr1_3:6802900-6802919 | Msa0100280:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | chr1_3:6803143-6803162 | Msa0100280:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | chr1_3:6803413-6803432 | Msa0100280:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | chr1_3:6803414-6803433 | Msa0100280:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | chr1_3:6803464-6803483 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_3:6803678-6803697 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_3:6803679-6803698 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | chr1_3:6803694-6803713 | None:intergenic | 30.0% | |
| GAGAGAAAAATCAAAGACAA+GGG | + | chr1_3:6801634-6801653 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | chr1_3:6801724-6801743 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | chr1_3:6801763-6801782 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | chr1_3:6801855-6801874 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | chr1_3:6801990-6802009 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | chr1_3:6802223-6802242 | Msa0100280:intron | 30.0% | |
| ATAAGGCATATTGGTAAACA+TGG | - | chr1_3:6802422-6802441 | Msa0100280:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | chr1_3:6802569-6802588 | Msa0100280:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | - | chr1_3:6802781-6802800 | Msa0100280:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | chr1_3:6802900-6802919 | Msa0100280:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | chr1_3:6803143-6803162 | Msa0100280:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | chr1_3:6803413-6803432 | Msa0100280:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | chr1_3:6803414-6803433 | Msa0100280:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | chr1_3:6803464-6803483 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_3:6803678-6803697 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_3:6803679-6803698 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | chr1_3:6803694-6803713 | None:intergenic | 30.0% | |
| AAGGGAACAAAAGTTGAACA+AGG | + | chr1_3:6801616-6801635 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | chr1_3:6801635-6801654 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | chr1_3:6801717-6801736 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | chr1_3:6801943-6801962 | Msa0100280:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | chr1_3:6802044-6802063 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | chr1_3:6802069-6802088 | Msa0100280:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | chr1_3:6802070-6802089 | Msa0100280:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | chr1_3:6802071-6802090 | Msa0100280:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | chr1_3:6802140-6802159 | Msa0100280:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | chr1_3:6802245-6802264 | Msa0100280:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | chr1_3:6802293-6802312 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | chr1_3:6802299-6802318 | Msa0100280:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | chr1_3:6802461-6802480 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | chr1_3:6802497-6802516 | Msa0100280:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | chr1_3:6802626-6802645 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | chr1_3:6802625-6802644 | Msa0100280:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | chr1_3:6802635-6802654 | Msa0100280:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | - | chr1_3:6802819-6802838 | Msa0100280:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | chr1_3:6802951-6802970 | None:intergenic | 35.0% |
| AAGGGAACAAAAGTTGAACA+AGG | + | chr1_3:6801616-6801635 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | chr1_3:6801635-6801654 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | chr1_3:6801717-6801736 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | chr1_3:6801943-6801962 | Msa0100280:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | chr1_3:6802044-6802063 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | chr1_3:6802069-6802088 | Msa0100280:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | chr1_3:6802070-6802089 | Msa0100280:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | chr1_3:6802071-6802090 | Msa0100280:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | chr1_3:6802140-6802159 | Msa0100280:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | chr1_3:6802245-6802264 | Msa0100280:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | chr1_3:6802293-6802312 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | chr1_3:6802299-6802318 | Msa0100280:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | chr1_3:6802461-6802480 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | chr1_3:6802497-6802516 | Msa0100280:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | chr1_3:6802626-6802645 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | chr1_3:6802625-6802644 | Msa0100280:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | chr1_3:6802635-6802654 | Msa0100280:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | - | chr1_3:6802819-6802838 | Msa0100280:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | chr1_3:6802951-6802970 | None:intergenic | 35.0% |
| CTATGATGAGGGATAAGTGA+TGG | + | chr1_3:6801656-6801675 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | chr1_3:6801667-6801686 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | chr1_3:6801668-6801687 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | chr1_3:6801826-6801845 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | chr1_3:6802028-6802047 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | chr1_3:6802081-6802100 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | chr1_3:6802130-6802149 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | chr1_3:6802131-6802150 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | chr1_3:6802143-6802162 | Msa0100280:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | chr1_3:6802236-6802255 | Msa0100280:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | chr1_3:6802237-6802256 | Msa0100280:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | chr1_3:6802261-6802280 | Msa0100280:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | chr1_3:6802262-6802281 | Msa0100280:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | chr1_3:6802313-6802332 | Msa0100280:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | chr1_3:6802319-6802338 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | chr1_3:6802318-6802337 | Msa0100280:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | chr1_3:6802399-6802418 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | chr1_3:6802500-6802519 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | chr1_3:6802505-6802524 | Msa0100280:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | chr1_3:6802518-6802537 | Msa0100280:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | chr1_3:6802592-6802611 | Msa0100280:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | chr1_3:6802619-6802638 | Msa0100280:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | chr1_3:6802620-6802639 | Msa0100280:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | chr1_3:6802639-6802658 | Msa0100280:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | chr1_3:6802671-6802690 | Msa0100280:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | chr1_3:6802672-6802691 | Msa0100280:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | - | chr1_3:6802824-6802843 | Msa0100280:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | chr1_3:6802861-6802880 | Msa0100280:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | chr1_3:6802897-6802916 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | chr1_3:6802941-6802960 | Msa0100280:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | chr1_3:6803493-6803512 | Msa0100280:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | chr1_3:6803494-6803513 | Msa0100280:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | chr1_3:6803495-6803514 | Msa0100280:exon | 40.0% | |
| CTATGATGAGGGATAAGTGA+TGG | + | chr1_3:6801656-6801675 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | chr1_3:6801667-6801686 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | chr1_3:6801668-6801687 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | chr1_3:6801826-6801845 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | chr1_3:6802028-6802047 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | chr1_3:6802081-6802100 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | chr1_3:6802130-6802149 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | chr1_3:6802131-6802150 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | chr1_3:6802143-6802162 | Msa0100280:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | chr1_3:6802236-6802255 | Msa0100280:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | chr1_3:6802237-6802256 | Msa0100280:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | chr1_3:6802261-6802280 | Msa0100280:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | chr1_3:6802262-6802281 | Msa0100280:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | chr1_3:6802313-6802332 | Msa0100280:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | chr1_3:6802319-6802338 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | chr1_3:6802318-6802337 | Msa0100280:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | chr1_3:6802399-6802418 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | chr1_3:6802500-6802519 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | chr1_3:6802505-6802524 | Msa0100280:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | chr1_3:6802518-6802537 | Msa0100280:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | chr1_3:6802592-6802611 | Msa0100280:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | chr1_3:6802619-6802638 | Msa0100280:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | chr1_3:6802620-6802639 | Msa0100280:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | chr1_3:6802639-6802658 | Msa0100280:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | chr1_3:6802671-6802690 | Msa0100280:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | chr1_3:6802672-6802691 | Msa0100280:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | - | chr1_3:6802824-6802843 | Msa0100280:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | chr1_3:6802861-6802880 | Msa0100280:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | chr1_3:6802897-6802916 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | chr1_3:6802941-6802960 | Msa0100280:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | chr1_3:6803493-6803512 | Msa0100280:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | chr1_3:6803494-6803513 | Msa0100280:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | chr1_3:6803495-6803514 | Msa0100280:exon | 40.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | chr1_3:6801969-6801988 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | chr1_3:6802129-6802148 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | chr1_3:6802241-6802260 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | chr1_3:6802256-6802275 | Msa0100280:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | chr1_3:6802346-6802365 | Msa0100280:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | chr1_3:6802351-6802370 | Msa0100280:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | chr1_3:6802366-6802385 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | chr1_3:6802383-6802402 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | chr1_3:6802504-6802523 | Msa0100280:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | chr1_3:6802585-6802604 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | chr1_3:6802582-6802601 | Msa0100280:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | chr1_3:6802593-6802612 | Msa0100280:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | chr1_3:6802640-6802659 | Msa0100280:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | chr1_3:6802673-6802692 | Msa0100280:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | - | chr1_3:6802825-6802844 | Msa0100280:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | chr1_3:6802836-6802855 | Msa0100280:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | chr1_3:6802850-6802869 | Msa0100280:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | chr1_3:6802863-6802882 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | chr1_3:6802887-6802906 | Msa0100280:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | chr1_3:6802909-6802928 | Msa0100280:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | chr1_3:6802927-6802946 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | chr1_3:6802928-6802947 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | chr1_3:6803422-6803441 | Msa0100280:CDS | 45.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | chr1_3:6801969-6801988 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | chr1_3:6802129-6802148 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | chr1_3:6802241-6802260 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | chr1_3:6802256-6802275 | Msa0100280:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | chr1_3:6802346-6802365 | Msa0100280:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | chr1_3:6802351-6802370 | Msa0100280:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | chr1_3:6802366-6802385 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | chr1_3:6802383-6802402 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | chr1_3:6802504-6802523 | Msa0100280:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | chr1_3:6802585-6802604 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | chr1_3:6802582-6802601 | Msa0100280:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | chr1_3:6802593-6802612 | Msa0100280:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | chr1_3:6802640-6802659 | Msa0100280:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | chr1_3:6802673-6802692 | Msa0100280:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | - | chr1_3:6802825-6802844 | Msa0100280:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | chr1_3:6802836-6802855 | Msa0100280:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | chr1_3:6802850-6802869 | Msa0100280:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | chr1_3:6802863-6802882 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | chr1_3:6802887-6802906 | Msa0100280:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | chr1_3:6802909-6802928 | Msa0100280:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | chr1_3:6802927-6802946 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | chr1_3:6802928-6802947 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | chr1_3:6803422-6803441 | Msa0100280:CDS | 45.0% | |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | chr1_3:6803012-6803031 | None:intergenic | 5.0% |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | chr1_3:6803012-6803031 | None:intergenic | 5.0% |
| AGATCAGCATATTGGCCAGC+AGG | - | chr1_3:6801951-6801970 | Msa0100280:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | chr1_3:6802439-6802458 | Msa0100280:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | chr1_3:6802598-6802617 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | chr1_3:6802613-6802632 | Msa0100280:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | chr1_3:6802677-6802696 | Msa0100280:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | chr1_3:6802837-6802856 | Msa0100280:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | chr1_3:6802878-6802897 | Msa0100280:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | chr1_3:6802908-6802927 | Msa0100280:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | chr1_3:6802913-6802932 | Msa0100280:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | chr1_3:6802924-6802943 | Msa0100280:CDS | 50.0% | |
| AGATCAGCATATTGGCCAGC+AGG | - | chr1_3:6801951-6801970 | Msa0100280:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | chr1_3:6802439-6802458 | Msa0100280:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | chr1_3:6802598-6802617 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | chr1_3:6802613-6802632 | Msa0100280:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | chr1_3:6802677-6802696 | Msa0100280:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | chr1_3:6802837-6802856 | Msa0100280:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | chr1_3:6802878-6802897 | Msa0100280:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | chr1_3:6802908-6802927 | Msa0100280:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | chr1_3:6802913-6802932 | Msa0100280:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | chr1_3:6802924-6802943 | Msa0100280:CDS | 50.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | chr1_3:6802449-6802468 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | chr1_3:6802645-6802664 | Msa0100280:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | chr1_3:6802646-6802665 | Msa0100280:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | chr1_3:6802676-6802695 | Msa0100280:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | chr1_3:6802682-6802701 | Msa0100280:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | chr1_3:6802719-6802738 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | chr1_3:6802856-6802875 | Msa0100280:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | chr1_3:6802877-6802896 | Msa0100280:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | chr1_3:6802919-6802938 | Msa0100280:CDS | 55.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | chr1_3:6802449-6802468 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | chr1_3:6802645-6802664 | Msa0100280:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | chr1_3:6802646-6802665 | Msa0100280:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | chr1_3:6802676-6802695 | Msa0100280:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | chr1_3:6802682-6802701 | Msa0100280:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | chr1_3:6802719-6802738 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | chr1_3:6802856-6802875 | Msa0100280:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | chr1_3:6802877-6802896 | Msa0100280:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | chr1_3:6802919-6802938 | Msa0100280:CDS | 55.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | chr1_3:6802124-6802143 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | chr1_3:6802683-6802702 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | chr1_3:6802709-6802728 | Msa0100280:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | chr1_3:6802713-6802732 | Msa0100280:CDS | 60.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | chr1_3:6802124-6802143 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | chr1_3:6802683-6802702 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | chr1_3:6802709-6802728 | Msa0100280:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | chr1_3:6802713-6802732 | Msa0100280:CDS | 60.0% | |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | chr1_3:6802121-6802140 | None:intergenic | 65.0% |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | chr1_3:6802121-6802140 | None:intergenic | 65.0% |
| TGGACGGGCGTGGGAGCTGA+AGG | - | chr1_3:6802655-6802674 | Msa0100280:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | chr1_3:6802685-6802704 | Msa0100280:CDS | 70.0% | |
| TGGACGGGCGTGGGAGCTGA+AGG | - | chr1_3:6802655-6802674 | Msa0100280:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | chr1_3:6802685-6802704 | Msa0100280:CDS | 70.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | chr1_3:6802112-6802131 | Msa0100280:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | chr1_3:6802118-6802137 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | chr1_3:6802688-6802707 | Msa0100280:CDS | 75.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | chr1_3:6802112-6802131 | Msa0100280:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | chr1_3:6802118-6802137 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | chr1_3:6802688-6802707 | Msa0100280:CDS | 75.0% | |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | chr1_3:6802692-6802711 | Msa0100280:CDS | 80.0% |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | chr1_3:6802692-6802711 | Msa0100280:CDS | 80.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | chr1_3:6802691-6802710 | Msa0100280:CDS | 85.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | chr1_3:6802691-6802710 | Msa0100280:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6801592 | 6803735 | 6801592 | ID=Msa0100280;Name=Msa0100280 |
| chr1_3 | mRNA | 6801592 | 6803735 | 6801592 | ID=Msa0100280-mRNA-1;Parent=Msa0100280;Name=Msa0100280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|211|386 |
| chr1_3 | exon | 6801592 | 6801825 | 6801592 | ID=Msa0100280-mRNA-1:exon:2599;Parent=Msa0100280-mRNA-1 |
| chr1_3 | exon | 6802365 | 6803735 | 6802365 | ID=Msa0100280-mRNA-1:exon:2598;Parent=Msa0100280-mRNA-1 |
| chr1_3 | five_prime_UTR | 6803503 | 6803735 | 6803503 | ID=Msa0100280-mRNA-1:five_prime_utr;Parent=Msa0100280-mRNA-1 |
| chr1_3 | CDS | 6802365 | 6803502 | 6802365 | ID=Msa0100280-mRNA-1:cds;Parent=Msa0100280-mRNA-1 |
| chr1_3 | CDS | 6801803 | 6801825 | 6801803 | ID=Msa0100280-mRNA-1:cds;Parent=Msa0100280-mRNA-1 |
| chr1_3 | three_prime_UTR | 6801592 | 6801802 | 6801592 | ID=Msa0100280-mRNA-1:three_prime_utr;Parent=Msa0100280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
