Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144520 | sp|A0A072VEP0|CHT5A_MEDTR | 96.364 | 385 | 13 | 1 | 1 | 385 | 1 | 384 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144520 | A0A2K3NGX0 | 87.297 | 370 | 45 | 2 | 16 | 385 | 1 | 368 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100280 | Msa0144520 | 0.866770 | 2.236699e-65 | -8.615850e-47 |
| Msa0144520 | Msa1337000 | 0.939176 | 1.973012e-99 | -8.615850e-47 |
| Msa0144520 | Msa1359410 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144520 | MtrunA17_Chr1g0149821 | 96.364 | 385 | 13 | 1 | 1 | 385 | 1 | 384 | 0.0 | 762 |
| Msa0144520 | MtrunA17_Chr4g0065511 | 47.384 | 344 | 178 | 2 | 41 | 383 | 35 | 376 | 8.93e-110 | 326 |
| Msa0144520 | MtrunA17_Chr4g0065501 | 49.425 | 348 | 169 | 3 | 41 | 383 | 37 | 382 | 2.50e-106 | 318 |
| Msa0144520 | MtrunA17_Chr3g0140461 | 36.975 | 357 | 207 | 5 | 33 | 384 | 47 | 390 | 1.08e-66 | 217 |
| Msa0144520 | MtrunA17_Chr3g0140491 | 35.393 | 356 | 213 | 5 | 33 | 384 | 22 | 364 | 1.86e-64 | 209 |
| Msa0144520 | MtrunA17_Chr4g0065561 | 35.580 | 371 | 221 | 5 | 13 | 379 | 8 | 364 | 1.22e-61 | 211 |
| Msa0144520 | MtrunA17_Chr4g0065531 | 33.923 | 339 | 215 | 3 | 41 | 376 | 27 | 359 | 4.60e-56 | 188 |
| Msa0144520 | MtrunA17_Chr4g0065541 | 33.041 | 342 | 220 | 3 | 41 | 379 | 21 | 356 | 1.17e-51 | 184 |
| Msa0144520 | MtrunA17_Chr4g0065451 | 39.161 | 143 | 79 | 2 | 241 | 383 | 19 | 153 | 8.56e-25 | 99.0 |
| Msa0144520 | MtrunA17_Chr4g0065461 | 36.842 | 114 | 67 | 2 | 38 | 148 | 28 | 139 | 1.54e-16 | 75.9 |
| Msa0144520 | MtrunA17_Chr4g0066051 | 28.387 | 155 | 111 | 0 | 41 | 195 | 28 | 182 | 1.28e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144520 | AT4G19810.2 | 41.159 | 345 | 195 | 3 | 41 | 383 | 28 | 366 | 5.00e-87 | 268 |
| Msa0144520 | AT4G19810.1 | 41.159 | 345 | 195 | 3 | 41 | 383 | 28 | 366 | 5.00e-87 | 268 |
| Msa0144520 | AT4G19800.1 | 40.469 | 341 | 196 | 2 | 41 | 380 | 7 | 341 | 6.74e-82 | 256 |
| Msa0144520 | AT4G19820.1 | 37.971 | 345 | 206 | 3 | 41 | 383 | 26 | 364 | 1.03e-76 | 242 |
| Msa0144520 | AT4G19750.1 | 37.183 | 355 | 210 | 5 | 33 | 380 | 4 | 352 | 9.27e-71 | 226 |
| Msa0144520 | AT4G19760.1 | 37.500 | 368 | 207 | 7 | 33 | 383 | 4 | 365 | 1.39e-70 | 226 |
| Msa0144520 | AT4G19720.1 | 35.674 | 356 | 205 | 5 | 41 | 383 | 6 | 350 | 2.29e-66 | 215 |
| Msa0144520 | AT4G19730.1 | 36.923 | 325 | 185 | 6 | 41 | 351 | 14 | 332 | 2.71e-59 | 196 |
| Msa0144520 | AT4G19770.1 | 39.080 | 261 | 152 | 2 | 122 | 381 | 1 | 255 | 1.71e-54 | 181 |
| Msa0144520 | AT4G19740.1 | 37.755 | 196 | 113 | 4 | 144 | 337 | 23 | 211 | 1.62e-29 | 114 |
Find 110 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATAATAACACCAATTT+TGG | 0.129479 | 1_4:-4109324 | Msa0144520:CDS |
| TCCGAAATTAGTACCAATTT+TGG | 0.140026 | 1_4:-4108597 | Msa0144520:CDS |
| AACATGTCTTGTTGAGTTTC+AGG | 0.150216 | 1_4:+4108876 | None:intergenic |
| GTTTGAAAGGCTATTTCTTT+TGG | 0.192066 | 1_4:-4108266 | Msa0144520:CDS |
| ATCCACGTGGCAAGAAAATA+TGG | 0.199050 | 1_4:-4108930 | Msa0144520:CDS |
| AATTCTACAATAAGGCTTAT+TGG | 0.208940 | 1_4:-4108753 | Msa0144520:CDS |
| TCCAAAATTGGTACTAATTT+CGG | 0.232381 | 1_4:+4108596 | None:intergenic |
| ATTTCAAGTTTGAAGGAAAT+TGG | 0.266881 | 1_4:+4109119 | None:intergenic |
| CGGGGTGGGAGCGGAGGCGG+TGG | 0.269593 | 1_4:-4108475 | Msa0144520:CDS |
| GTTATGGGTTTGGCTTTATA+TGG | 0.270864 | 1_4:-4108531 | Msa0144520:CDS |
| TTTACTACAATTCTACAATA+AGG | 0.300592 | 1_4:-4108761 | Msa0144520:CDS |
| TGATTGGTGATGTTGGAAAT+TGG | 0.302533 | 1_4:+4109449 | None:intergenic |
| CAACGGGGTGGGAGCGGAGG+CGG | 0.330744 | 1_4:-4108478 | Msa0144520:CDS |
| TTGATGGTGTTGACTTGGAT+TGG | 0.339296 | 1_4:-4108905 | Msa0144520:CDS |
| CCATGAGTGGAGTCCAAAAT+TGG | 0.343332 | 1_4:+4108584 | None:intergenic |
| GCTCCCACCCCGTTGACATT+TGG | 0.345635 | 1_4:+4108486 | None:intergenic |
| TAACTTTGTATCAATTATAA+AGG | 0.353027 | 1_4:+4107605 | None:intergenic |
| CGACCTGAAAAGTTGGTTAT+GGG | 0.357426 | 1_4:-4108546 | Msa0144520:CDS |
| TGAAAAGTTGGTTATGGGTT+TGG | 0.358876 | 1_4:-4108541 | Msa0144520:CDS |
| GGTTCGGTTCGCTAAGTCCT+TGG | 0.378994 | 1_4:-4108289 | Msa0144520:CDS |
| AGTTTGAAGGAAATTGGTTC+TGG | 0.383577 | 1_4:+4109125 | None:intergenic |
| TCGACCTGAAAAGTTGGTTA+TGG | 0.384573 | 1_4:-4108547 | Msa0144520:CDS |
| TGATGGTGTTGACTTGGATT+GGG | 0.393541 | 1_4:-4108904 | Msa0144520:CDS |
| TGTATCAATTATAAAGGTCT+AGG | 0.402017 | 1_4:+4107611 | None:intergenic |
| TGATGATACATTGAAGAAAA+TGG | 0.402523 | 1_4:+4109289 | None:intergenic |
| CTACCATCCGTGTCAGTTGC+AGG | 0.408728 | 1_4:+4108450 | None:intergenic |
| TGGCTTTATATGGACGGGCG+TGG | 0.410489 | 1_4:-4108521 | Msa0144520:CDS |
| ATTCTTATGCGAGTACTACT+TGG | 0.411139 | 1_4:-4108347 | Msa0144520:CDS |
| TCACCGGCGGGGAACGGTGG+CGG | 0.416311 | 1_4:+4109051 | None:intergenic |
| CTATCAATAAGTACTTAGAT+TGG | 0.421164 | 1_4:-4108698 | Msa0144520:CDS |
| TTGGGCCCTTGGGAAGGATA+AGG | 0.422516 | 1_4:-4108247 | Msa0144520:CDS |
| AAACTTGAAATCACAAAATC+CGG | 0.429982 | 1_4:-4109107 | Msa0144520:CDS |
| TGAAGGATCCAAATGTCAAC+GGG | 0.437680 | 1_4:-4108494 | Msa0144520:CDS |
| GTTCGGTTCGCTAAGTCCTT+GGG | 0.446920 | 1_4:-4108288 | Msa0144520:CDS |
| ACATGGTCCGAGATCGTATC+CGG | 0.447523 | 1_4:-4108727 | Msa0144520:CDS |
| GGCTTTATATGGACGGGCGT+GGG | 0.454743 | 1_4:-4108520 | Msa0144520:CDS |
| GGTACGTGGGATAATAATAC+TGG | 0.460041 | 1_4:-4108648 | Msa0144520:CDS |
| TATTGTAGAATTGTAGTAAA+CGG | 0.462540 | 1_4:+4108764 | None:intergenic |
| CGAACCTTAGCCGTTATTGA+AGG | 0.463955 | 1_4:+4108306 | None:intergenic |
| ACTCCACTCATGGATCAAAT+CGG | 0.467968 | 1_4:-4108574 | Msa0144520:CDS |
| AAATGTCAACGGGGTGGGAG+CGG | 0.470085 | 1_4:-4108484 | Msa0144520:CDS |
| AATGCTATTAAAATTAAGTA+AGG | 0.482276 | 1_4:+4107458 | None:intergenic |
| TGGGTTTGGCTTTATATGGA+CGG | 0.486221 | 1_4:-4108527 | Msa0144520:CDS |
| CTTCAATAACGGCTAAGGTT+CGG | 0.486769 | 1_4:-4108305 | Msa0144520:CDS |
| TGTTTGCTGAAGCCAAGGTT+AGG | 0.488465 | 1_4:-4108815 | Msa0144520:CDS |
| TGTTTGCAGCTTCAAATGCA+TGG | 0.493710 | 1_4:-4107671 | Msa0144520:intron |
| GTTTGCAGCTTCAAATGCAT+GGG | 0.495180 | 1_4:-4107670 | Msa0144520:intron |
| TGGGTTTGATGGTGTTGACT+TGG | 0.495194 | 1_4:-4108910 | Msa0144520:CDS |
| TGCTTTGTTTGCTGAAGCCA+AGG | 0.495351 | 1_4:-4108820 | Msa0144520:CDS |
| TGTCAACGGGGTGGGAGCGG+AGG | 0.495432 | 1_4:-4108481 | Msa0144520:CDS |
| TATCAATAAGTACTTAGATT+GGG | 0.495623 | 1_4:-4108697 | Msa0144520:CDS |
| GGGTTTGGCTTTATATGGAC+GGG | 0.497020 | 1_4:-4108526 | Msa0144520:CDS |
| CTCCACTCATGGATCAAATC+GGG | 0.499458 | 1_4:-4108573 | Msa0144520:CDS |
| CAACAAGACATGTTTAACCT+TGG | 0.500039 | 1_4:-4108867 | Msa0144520:CDS |
| GCAAGAAAATATGGGTTTGA+TGG | 0.503864 | 1_4:-4108921 | Msa0144520:CDS |
| TTGGTTTGTTGTACGAGGAA+TGG | 0.511153 | 1_4:-4108848 | Msa0144520:CDS |
| TTGAAGTTTAATAAAGAGAG+TGG | 0.514869 | 1_4:-4108408 | Msa0144520:CDS |
| AGATCAGCATATTGGCCAGC+AGG | 0.522729 | 1_4:-4109215 | Msa0144520:CDS |
| GCTAAGTCCTTGGGTTTGAA+AGG | 0.525269 | 1_4:-4108279 | Msa0144520:CDS |
| TGGACGGGCGTGGGAGCTGA+AGG | 0.529639 | 1_4:-4108511 | Msa0144520:CDS |
| ATGGTGTTAGATCAGCATAT+TGG | 0.535251 | 1_4:-4109223 | Msa0144520:CDS |
| TACTTATTGATAGCTTGAGC+CGG | 0.537112 | 1_4:+4108708 | None:intergenic |
| ATGCGAGTACTACTTGGATC+GGG | 0.538766 | 1_4:-4108341 | Msa0144520:CDS |
| TCCACGTGGCAAGAAAATAT+GGG | 0.538797 | 1_4:-4108929 | Msa0144520:CDS |
| GCTTGAGCCGGATACGATCT+CGG | 0.541555 | 1_4:+4108720 | None:intergenic |
| AATCCAATAATAAAAGTCAA+GGG | 0.544652 | 1_4:+4109573 | None:intergenic |
| TGATGACGGGCCTTCAATAA+CGG | 0.548821 | 1_4:-4108316 | Msa0144520:CDS |
| GAATCCAATAATAAAAGTCA+AGG | 0.549027 | 1_4:+4109572 | None:intergenic |
| CTTGGATCGGGTATGATGAC+GGG | 0.552269 | 1_4:-4108329 | Msa0144520:CDS |
| ACTTGGATCGGGTATGATGA+CGG | 0.552521 | 1_4:-4108330 | Msa0144520:CDS |
| TCCAATCCTTATCCTTCCCA+AGG | 0.552810 | 1_4:+4108241 | None:intergenic |
| TGCTAATGTTGTGTATGATA+AGG | 0.556900 | 1_4:-4108385 | Msa0144520:CDS |
| CTATGATGAGGGATAAGTGA+TGG | 0.560785 | 1_4:+4109510 | None:intergenic |
| CCCTTGGGAAGGATAAGGAT+TGG | 0.562576 | 1_4:-4108242 | Msa0144520:CDS |
| CGGGCCTTCAATAACGGCTA+AGG | 0.563983 | 1_4:-4108310 | Msa0144520:CDS |
| GATCCAAATGTCAACGGGGT+GGG | 0.564298 | 1_4:-4108489 | Msa0144520:CDS |
| TATGCGAGTACTACTTGGAT+CGG | 0.565120 | 1_4:-4108342 | Msa0144520:CDS |
| GAAATAGCCTTTCAAACCCA+AGG | 0.570698 | 1_4:+4108272 | None:intergenic |
| GTTCTGGTTGAATGAAAGCA+AGG | 0.575522 | 1_4:+4109141 | None:intergenic |
| GGGGTGGGAGCGGAGGCGGT+GGG | 0.578698 | 1_4:-4108474 | Msa0144520:CDS |
| CTGAAGGATCCAAATGTCAA+CGG | 0.582001 | 1_4:-4108495 | Msa0144520:CDS |
| TAGTTTGTGTCAATCAAAGA+AGG | 0.588638 | 1_4:+4109179 | None:intergenic |
| GGGTGTTCGACCTGAAAAGT+TGG | 0.591114 | 1_4:-4108553 | Msa0144520:CDS |
| AAGTAAGGACTAATCTTACA+AGG | 0.601153 | 1_4:+4107473 | None:intergenic |
| GTTTCGATTATCACGGTACG+TGG | 0.604563 | 1_4:-4108662 | Msa0144520:CDS |
| ACTCCGCCACCGTTCCCCGC+CGG | 0.609308 | 1_4:-4109054 | Msa0144520:CDS |
| CCAATCCTTATCCTTCCCAA+GGG | 0.616123 | 1_4:+4108242 | None:intergenic |
| TGAACGGTTCAACTATGATG+AGG | 0.616718 | 1_4:+4109498 | None:intergenic |
| TAACCTTGGTTTGTTGTACG+AGG | 0.617085 | 1_4:-4108853 | Msa0144520:CDS |
| GGTGGGACCTGCAACTGACA+CGG | 0.621426 | 1_4:-4108457 | Msa0144520:CDS |
| ATCCAATAATAAAAGTCAAG+GGG | 0.621819 | 1_4:+4109574 | None:intergenic |
| ATAAGGCTTATTGGTAAACA+TGG | 0.622291 | 1_4:-4108744 | Msa0144520:CDS |
| GCATATATATAGAGAACAAG+TGG | 0.623772 | 1_4:+4109403 | None:intergenic |
| CCAATGTGTTTCGATTATCA+CGG | 0.625563 | 1_4:-4108669 | Msa0144520:CDS |
| GGATCCAAATGTCAACGGGG+TGG | 0.627972 | 1_4:-4108490 | Msa0144520:CDS |
| GAACGGTTCAACTATGATGA+GGG | 0.630645 | 1_4:+4109499 | None:intergenic |
| AGAATTGTAGTAAACGGCAG+AGG | 0.632126 | 1_4:+4108770 | None:intergenic |
| TTTGCAGCTTCAAATGCATG+GGG | 0.637832 | 1_4:-4107669 | Msa0144520:intron |
| CACCCGATTTGATCCATGAG+TGG | 0.643006 | 1_4:+4108571 | None:intergenic |
| CCGTGATAATCGAAACACAT+TGG | 0.644242 | 1_4:+4108669 | None:intergenic |
| TTGAATTGTTGTGAATTGAA+CGG | 0.648549 | 1_4:+4109482 | None:intergenic |
| GATTGGACCATCTCAAAACA+AGG | 0.657312 | 1_4:-4108225 | Msa0144520:intron |
| GGACCTGCAACTGACACGGA+TGG | 0.660097 | 1_4:-4108453 | Msa0144520:CDS |
| ATATATATGATCATAAACCA+TGG | 0.667935 | 1_4:-4109357 | Msa0144520:exon |
| ATTCCTCGTACAACAAACCA+AGG | 0.669048 | 1_4:+4108850 | None:intergenic |
| TTTCGATTATCACGGTACGT+GGG | 0.671850 | 1_4:-4108661 | Msa0144520:CDS |
| AAGGGAACAAAAGTTGAACA+AGG | 0.674562 | 1_4:+4109550 | None:intergenic |
| GCAGAGGTCAAAAGTAAACG+TGG | 0.725267 | 1_4:+4108786 | None:intergenic |
| TATAAATTCAACAATCCACG+TGG | 0.728895 | 1_4:-4108943 | Msa0144520:CDS |
| GAAGGATCCAAATGTCAACG+GGG | 0.809484 | 1_4:-4108493 | Msa0144520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATAAATATATTAT+TGG | - | chr1_4:4109030-4109049 | Msa0144520:CDS | 0.0% |
| !!! | TTTTTAAATAAATATATTAT+TGG | - | chr1_4:4109030-4109049 | Msa0144520:CDS | 0.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | chr1_4:4107592-4107611 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | chr1_4:4108946-4108965 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | chr1_4:4108971-4108990 | Msa0144520:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | chr1_4:4109420-4109439 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+TGG | + | chr1_4:4109466-4109485 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | chr1_4:4109492-4109511 | Msa0144520:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | chr1_4:4109493-4109512 | Msa0144520:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_4:4109567-4109586 | None:intergenic | 15.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | chr1_4:4107592-4107611 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | chr1_4:4108946-4108965 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | chr1_4:4108971-4108990 | Msa0144520:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | chr1_4:4109420-4109439 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+TGG | + | chr1_4:4109466-4109485 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | chr1_4:4109492-4109511 | Msa0144520:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | chr1_4:4109493-4109512 | Msa0144520:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_4:4109567-4109586 | None:intergenic | 15.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | chr1_4:4107665-4107684 | Msa0144520:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | chr1_4:4107691-4107710 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | chr1_4:4107695-4107714 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | chr1_4:4107698-4107717 | Msa0144520:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | chr1_4:4107780-4107799 | Msa0144520:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | chr1_4:4107788-4107807 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | chr1_4:4108261-4108280 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | chr1_4:4108261-4108280 | Msa0144520:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | chr1_4:4108325-4108344 | Msa0144520:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | chr1_4:4109207-4109226 | None:intergenic | 20.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | chr1_4:4107665-4107684 | Msa0144520:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | chr1_4:4107691-4107710 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | chr1_4:4107695-4107714 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | chr1_4:4107698-4107717 | Msa0144520:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | chr1_4:4107780-4107799 | Msa0144520:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | chr1_4:4107788-4107807 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | chr1_4:4108261-4108280 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | chr1_4:4108261-4108280 | Msa0144520:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | chr1_4:4108325-4108344 | Msa0144520:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | chr1_4:4109207-4109226 | None:intergenic | 20.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | chr1_4:4107543-4107562 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | chr1_4:4107736-4107755 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | chr1_4:4107906-4107925 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | chr1_4:4107913-4107932 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | chr1_4:4107915-4107934 | Msa0144520:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | chr1_4:4107990-4108009 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | chr1_4:4107990-4108009 | Msa0144520:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | chr1_4:4107993-4108012 | Msa0144520:intron | 25.0% |
| ! | AATTCTACAATAAGGCTTAT+TGG | - | chr1_4:4108269-4108288 | Msa0144520:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | chr1_4:4108324-4108343 | Msa0144520:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | chr1_4:4108429-4108448 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | chr1_4:4108614-4108633 | Msa0144520:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | chr1_4:4108757-4108776 | Msa0144520:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | chr1_4:4109155-4109174 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | chr1_4:4109233-4109252 | Msa0144520:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | chr1_4:4109254-4109273 | Msa0144520:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | chr1_4:4109414-4109433 | None:intergenic | 25.0% |
| ! | GAATCCAATAATAAAAGTCA+AGG | + | chr1_4:4107453-4107472 | None:intergenic | 25.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | chr1_4:4107543-4107562 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | chr1_4:4107736-4107755 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | chr1_4:4107906-4107925 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | chr1_4:4107913-4107932 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | chr1_4:4107915-4107934 | Msa0144520:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | chr1_4:4107990-4108009 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | chr1_4:4107990-4108009 | Msa0144520:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | chr1_4:4107993-4108012 | Msa0144520:intron | 25.0% |
| ! | AATTCTACAATAAGGCTTAT+TGG | - | chr1_4:4108269-4108288 | Msa0144520:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | chr1_4:4108324-4108343 | Msa0144520:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | chr1_4:4108429-4108448 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | chr1_4:4108614-4108633 | Msa0144520:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | chr1_4:4108757-4108776 | Msa0144520:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | chr1_4:4109155-4109174 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | chr1_4:4109233-4109252 | Msa0144520:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | chr1_4:4109254-4109273 | Msa0144520:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | chr1_4:4109414-4109433 | None:intergenic | 25.0% |
| GAGAGAAAAATCAAAGACAA+GGG | + | chr1_4:4107493-4107512 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | chr1_4:4107583-4107602 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | chr1_4:4107622-4107641 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | chr1_4:4107714-4107733 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | chr1_4:4107846-4107865 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | chr1_4:4108079-4108098 | Msa0144520:intron | 30.0% | |
| ATAAGGCTTATTGGTAAACA+TGG | - | chr1_4:4108278-4108297 | Msa0144520:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | chr1_4:4108425-4108444 | Msa0144520:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | - | chr1_4:4108637-4108656 | Msa0144520:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | chr1_4:4108756-4108775 | Msa0144520:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | chr1_4:4109000-4109019 | Msa0144520:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | chr1_4:4109271-4109290 | Msa0144520:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | chr1_4:4109272-4109291 | Msa0144520:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | chr1_4:4109322-4109341 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_4:4109536-4109555 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_4:4109537-4109556 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | chr1_4:4109552-4109571 | None:intergenic | 30.0% | |
| GAGAGAAAAATCAAAGACAA+GGG | + | chr1_4:4107493-4107512 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | chr1_4:4107583-4107602 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | chr1_4:4107622-4107641 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | chr1_4:4107714-4107733 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | chr1_4:4107846-4107865 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | chr1_4:4108079-4108098 | Msa0144520:intron | 30.0% | |
| ATAAGGCTTATTGGTAAACA+TGG | - | chr1_4:4108278-4108297 | Msa0144520:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | chr1_4:4108425-4108444 | Msa0144520:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | - | chr1_4:4108637-4108656 | Msa0144520:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | chr1_4:4108756-4108775 | Msa0144520:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | chr1_4:4109000-4109019 | Msa0144520:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | chr1_4:4109271-4109290 | Msa0144520:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | chr1_4:4109272-4109291 | Msa0144520:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | chr1_4:4109322-4109341 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_4:4109536-4109555 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_4:4109537-4109556 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | chr1_4:4109552-4109571 | None:intergenic | 30.0% | |
| AAGGGAACAAAAGTTGAACA+AGG | + | chr1_4:4107475-4107494 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | chr1_4:4107494-4107513 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | chr1_4:4107576-4107595 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | chr1_4:4107799-4107818 | Msa0144520:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | chr1_4:4107900-4107919 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | chr1_4:4107925-4107944 | Msa0144520:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | chr1_4:4107926-4107945 | Msa0144520:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | chr1_4:4107927-4107946 | Msa0144520:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | chr1_4:4107996-4108015 | Msa0144520:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | chr1_4:4108101-4108120 | Msa0144520:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | chr1_4:4108149-4108168 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | chr1_4:4108155-4108174 | Msa0144520:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | chr1_4:4108317-4108336 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | chr1_4:4108353-4108372 | Msa0144520:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | chr1_4:4108482-4108501 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | chr1_4:4108481-4108500 | Msa0144520:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | chr1_4:4108491-4108510 | Msa0144520:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | - | chr1_4:4108675-4108694 | Msa0144520:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | chr1_4:4108807-4108826 | None:intergenic | 35.0% |
| AAGGGAACAAAAGTTGAACA+AGG | + | chr1_4:4107475-4107494 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | chr1_4:4107494-4107513 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | chr1_4:4107576-4107595 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | chr1_4:4107799-4107818 | Msa0144520:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | chr1_4:4107900-4107919 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | chr1_4:4107925-4107944 | Msa0144520:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | chr1_4:4107926-4107945 | Msa0144520:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | chr1_4:4107927-4107946 | Msa0144520:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | chr1_4:4107996-4108015 | Msa0144520:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | chr1_4:4108101-4108120 | Msa0144520:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | chr1_4:4108149-4108168 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | chr1_4:4108155-4108174 | Msa0144520:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | chr1_4:4108317-4108336 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | chr1_4:4108353-4108372 | Msa0144520:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | chr1_4:4108482-4108501 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | chr1_4:4108481-4108500 | Msa0144520:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | chr1_4:4108491-4108510 | Msa0144520:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | - | chr1_4:4108675-4108694 | Msa0144520:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | chr1_4:4108807-4108826 | None:intergenic | 35.0% |
| CTATGATGAGGGATAAGTGA+TGG | + | chr1_4:4107515-4107534 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | chr1_4:4107526-4107545 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | chr1_4:4107527-4107546 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | chr1_4:4107685-4107704 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | chr1_4:4107884-4107903 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | chr1_4:4107937-4107956 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | chr1_4:4107986-4108005 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | chr1_4:4107987-4108006 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | chr1_4:4107999-4108018 | Msa0144520:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | chr1_4:4108092-4108111 | Msa0144520:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | chr1_4:4108093-4108112 | Msa0144520:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | chr1_4:4108117-4108136 | Msa0144520:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | chr1_4:4108118-4108137 | Msa0144520:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | chr1_4:4108169-4108188 | Msa0144520:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | chr1_4:4108175-4108194 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | chr1_4:4108174-4108193 | Msa0144520:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | chr1_4:4108255-4108274 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | chr1_4:4108356-4108375 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | chr1_4:4108361-4108380 | Msa0144520:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | chr1_4:4108374-4108393 | Msa0144520:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | chr1_4:4108448-4108467 | Msa0144520:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | chr1_4:4108475-4108494 | Msa0144520:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | chr1_4:4108476-4108495 | Msa0144520:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | chr1_4:4108495-4108514 | Msa0144520:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | chr1_4:4108527-4108546 | Msa0144520:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | chr1_4:4108528-4108547 | Msa0144520:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | - | chr1_4:4108680-4108699 | Msa0144520:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | chr1_4:4108717-4108736 | Msa0144520:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | chr1_4:4108753-4108772 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | chr1_4:4108797-4108816 | Msa0144520:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | chr1_4:4109351-4109370 | Msa0144520:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | chr1_4:4109352-4109371 | Msa0144520:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | chr1_4:4109353-4109372 | Msa0144520:exon | 40.0% | |
| CTATGATGAGGGATAAGTGA+TGG | + | chr1_4:4107515-4107534 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | chr1_4:4107526-4107545 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | chr1_4:4107527-4107546 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | chr1_4:4107685-4107704 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | chr1_4:4107884-4107903 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | chr1_4:4107937-4107956 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | chr1_4:4107986-4108005 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | chr1_4:4107987-4108006 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | chr1_4:4107999-4108018 | Msa0144520:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | chr1_4:4108092-4108111 | Msa0144520:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | chr1_4:4108093-4108112 | Msa0144520:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | chr1_4:4108117-4108136 | Msa0144520:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | chr1_4:4108118-4108137 | Msa0144520:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | chr1_4:4108169-4108188 | Msa0144520:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | chr1_4:4108175-4108194 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | chr1_4:4108174-4108193 | Msa0144520:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | chr1_4:4108255-4108274 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | chr1_4:4108356-4108375 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | chr1_4:4108361-4108380 | Msa0144520:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | chr1_4:4108374-4108393 | Msa0144520:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | chr1_4:4108448-4108467 | Msa0144520:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | chr1_4:4108475-4108494 | Msa0144520:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | chr1_4:4108476-4108495 | Msa0144520:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | chr1_4:4108495-4108514 | Msa0144520:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | chr1_4:4108527-4108546 | Msa0144520:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | chr1_4:4108528-4108547 | Msa0144520:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | - | chr1_4:4108680-4108699 | Msa0144520:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | chr1_4:4108717-4108736 | Msa0144520:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | chr1_4:4108753-4108772 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | chr1_4:4108797-4108816 | Msa0144520:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | chr1_4:4109351-4109370 | Msa0144520:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | chr1_4:4109352-4109371 | Msa0144520:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | chr1_4:4109353-4109372 | Msa0144520:exon | 40.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | chr1_4:4107825-4107844 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | chr1_4:4107985-4108004 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | chr1_4:4108097-4108116 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | chr1_4:4108112-4108131 | Msa0144520:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | chr1_4:4108202-4108221 | Msa0144520:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | chr1_4:4108207-4108226 | Msa0144520:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | chr1_4:4108222-4108241 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | chr1_4:4108239-4108258 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | chr1_4:4108360-4108379 | Msa0144520:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | chr1_4:4108441-4108460 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | chr1_4:4108438-4108457 | Msa0144520:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | chr1_4:4108449-4108468 | Msa0144520:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | chr1_4:4108496-4108515 | Msa0144520:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | chr1_4:4108529-4108548 | Msa0144520:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | - | chr1_4:4108681-4108700 | Msa0144520:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | chr1_4:4108692-4108711 | Msa0144520:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | chr1_4:4108706-4108725 | Msa0144520:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | chr1_4:4108719-4108738 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | chr1_4:4108743-4108762 | Msa0144520:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | chr1_4:4108765-4108784 | Msa0144520:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | chr1_4:4108783-4108802 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | chr1_4:4108784-4108803 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | chr1_4:4109280-4109299 | Msa0144520:CDS | 45.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | chr1_4:4107825-4107844 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | chr1_4:4107985-4108004 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | chr1_4:4108097-4108116 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | chr1_4:4108112-4108131 | Msa0144520:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | chr1_4:4108202-4108221 | Msa0144520:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | chr1_4:4108207-4108226 | Msa0144520:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | chr1_4:4108222-4108241 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | chr1_4:4108239-4108258 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | chr1_4:4108360-4108379 | Msa0144520:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | chr1_4:4108441-4108460 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | chr1_4:4108438-4108457 | Msa0144520:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | chr1_4:4108449-4108468 | Msa0144520:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | chr1_4:4108496-4108515 | Msa0144520:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | chr1_4:4108529-4108548 | Msa0144520:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | - | chr1_4:4108681-4108700 | Msa0144520:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | chr1_4:4108692-4108711 | Msa0144520:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | chr1_4:4108706-4108725 | Msa0144520:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | chr1_4:4108719-4108738 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | chr1_4:4108743-4108762 | Msa0144520:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | chr1_4:4108765-4108784 | Msa0144520:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | chr1_4:4108783-4108802 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | chr1_4:4108784-4108803 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | chr1_4:4109280-4109299 | Msa0144520:CDS | 45.0% | |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | chr1_4:4108868-4108887 | None:intergenic | 5.0% |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | chr1_4:4108868-4108887 | None:intergenic | 5.0% |
| AGATCAGCATATTGGCCAGC+AGG | - | chr1_4:4107807-4107826 | Msa0144520:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | chr1_4:4108295-4108314 | Msa0144520:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | chr1_4:4108454-4108473 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | chr1_4:4108469-4108488 | Msa0144520:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | chr1_4:4108533-4108552 | Msa0144520:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | chr1_4:4108693-4108712 | Msa0144520:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | chr1_4:4108734-4108753 | Msa0144520:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | chr1_4:4108764-4108783 | Msa0144520:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | chr1_4:4108769-4108788 | Msa0144520:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | chr1_4:4108780-4108799 | Msa0144520:CDS | 50.0% | |
| AGATCAGCATATTGGCCAGC+AGG | - | chr1_4:4107807-4107826 | Msa0144520:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | chr1_4:4108295-4108314 | Msa0144520:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | chr1_4:4108454-4108473 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | chr1_4:4108469-4108488 | Msa0144520:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | chr1_4:4108533-4108552 | Msa0144520:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | chr1_4:4108693-4108712 | Msa0144520:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | chr1_4:4108734-4108753 | Msa0144520:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | chr1_4:4108764-4108783 | Msa0144520:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | chr1_4:4108769-4108788 | Msa0144520:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | chr1_4:4108780-4108799 | Msa0144520:CDS | 50.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | chr1_4:4108305-4108324 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | chr1_4:4108501-4108520 | Msa0144520:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | chr1_4:4108502-4108521 | Msa0144520:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | chr1_4:4108532-4108551 | Msa0144520:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | chr1_4:4108538-4108557 | Msa0144520:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | chr1_4:4108575-4108594 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | chr1_4:4108712-4108731 | Msa0144520:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | chr1_4:4108733-4108752 | Msa0144520:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | chr1_4:4108775-4108794 | Msa0144520:CDS | 55.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | chr1_4:4108305-4108324 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | chr1_4:4108501-4108520 | Msa0144520:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | chr1_4:4108502-4108521 | Msa0144520:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | chr1_4:4108532-4108551 | Msa0144520:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | chr1_4:4108538-4108557 | Msa0144520:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | chr1_4:4108575-4108594 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | chr1_4:4108712-4108731 | Msa0144520:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | chr1_4:4108733-4108752 | Msa0144520:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | chr1_4:4108775-4108794 | Msa0144520:CDS | 55.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | chr1_4:4107980-4107999 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | chr1_4:4108539-4108558 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | chr1_4:4108565-4108584 | Msa0144520:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | chr1_4:4108569-4108588 | Msa0144520:CDS | 60.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | chr1_4:4107980-4107999 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | chr1_4:4108539-4108558 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | chr1_4:4108565-4108584 | Msa0144520:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | chr1_4:4108569-4108588 | Msa0144520:CDS | 60.0% | |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | chr1_4:4107977-4107996 | None:intergenic | 65.0% |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | chr1_4:4107977-4107996 | None:intergenic | 65.0% |
| TGGACGGGCGTGGGAGCTGA+AGG | - | chr1_4:4108511-4108530 | Msa0144520:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | chr1_4:4108541-4108560 | Msa0144520:CDS | 70.0% | |
| TGGACGGGCGTGGGAGCTGA+AGG | - | chr1_4:4108511-4108530 | Msa0144520:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | chr1_4:4108541-4108560 | Msa0144520:CDS | 70.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | chr1_4:4107968-4107987 | Msa0144520:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | chr1_4:4107974-4107993 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | chr1_4:4108544-4108563 | Msa0144520:CDS | 75.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | chr1_4:4107968-4107987 | Msa0144520:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | chr1_4:4107974-4107993 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | chr1_4:4108544-4108563 | Msa0144520:CDS | 75.0% | |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | chr1_4:4108548-4108567 | Msa0144520:CDS | 80.0% |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | chr1_4:4108548-4108567 | Msa0144520:CDS | 80.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | chr1_4:4108547-4108566 | Msa0144520:CDS | 85.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | chr1_4:4108547-4108566 | Msa0144520:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4107451 | 4109593 | 4107451 | ID=Msa0144520;Name=Msa0144520 |
| chr1_4 | mRNA | 4107451 | 4109593 | 4107451 | ID=Msa0144520-mRNA-1;Parent=Msa0144520;Name=Msa0144520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|211|385 |
| chr1_4 | exon | 4107451 | 4107684 | 4107451 | ID=Msa0144520-mRNA-1:exon:1698;Parent=Msa0144520-mRNA-1 |
| chr1_4 | exon | 4108226 | 4109593 | 4108226 | ID=Msa0144520-mRNA-1:exon:1697;Parent=Msa0144520-mRNA-1 |
| chr1_4 | five_prime_UTR | 4109361 | 4109593 | 4109361 | ID=Msa0144520-mRNA-1:five_prime_utr;Parent=Msa0144520-mRNA-1 |
| chr1_4 | CDS | 4108226 | 4109360 | 4108226 | ID=Msa0144520-mRNA-1:cds;Parent=Msa0144520-mRNA-1 |
| chr1_4 | CDS | 4107662 | 4107684 | 4107662 | ID=Msa0144520-mRNA-1:cds;Parent=Msa0144520-mRNA-1 |
| chr1_4 | three_prime_UTR | 4107451 | 4107661 | 4107451 | ID=Msa0144520-mRNA-1:three_prime_utr;Parent=Msa0144520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
