Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359410 | AGX84978.1 | 96.632 | 386 | 11 | 1 | 1 | 386 | 1 | 384 | 0.0 | 765 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359410 | sp|A0A072VEP0|CHT5A_MEDTR | 95.337 | 386 | 16 | 1 | 1 | 386 | 1 | 384 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359410 | A0A2K3NGX0 | 86.253 | 371 | 48 | 2 | 16 | 386 | 1 | 368 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100280 | Msa1359410 | 0.922218 | 1.307513e-88 | -8.615850e-47 |
| Msa0144520 | Msa1359410 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
| Msa1337000 | Msa1359410 | 0.818044 | 2.407246e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359410 | MtrunA17_Chr1g0149821 | 95.337 | 386 | 16 | 1 | 1 | 386 | 1 | 384 | 0.0 | 743 |
| Msa1359410 | MtrunA17_Chr4g0065511 | 47.384 | 344 | 178 | 2 | 42 | 384 | 35 | 376 | 4.10e-109 | 325 |
| Msa1359410 | MtrunA17_Chr4g0065501 | 49.138 | 348 | 170 | 3 | 42 | 384 | 37 | 382 | 1.99e-105 | 315 |
| Msa1359410 | MtrunA17_Chr3g0140461 | 36.975 | 357 | 207 | 5 | 34 | 385 | 47 | 390 | 9.24e-67 | 217 |
| Msa1359410 | MtrunA17_Chr3g0140491 | 35.393 | 356 | 213 | 5 | 34 | 385 | 22 | 364 | 1.33e-64 | 210 |
| Msa1359410 | MtrunA17_Chr4g0065561 | 35.484 | 372 | 221 | 5 | 13 | 380 | 8 | 364 | 1.93e-61 | 211 |
| Msa1359410 | MtrunA17_Chr4g0065531 | 32.880 | 368 | 228 | 4 | 13 | 377 | 8 | 359 | 3.99e-56 | 188 |
| Msa1359410 | MtrunA17_Chr4g0065541 | 33.041 | 342 | 220 | 3 | 42 | 380 | 21 | 356 | 1.44e-51 | 183 |
| Msa1359410 | MtrunA17_Chr4g0065451 | 39.161 | 143 | 79 | 2 | 242 | 384 | 19 | 153 | 8.59e-25 | 99.0 |
| Msa1359410 | MtrunA17_Chr4g0065461 | 36.842 | 114 | 67 | 2 | 39 | 149 | 28 | 139 | 1.50e-16 | 75.9 |
| Msa1359410 | MtrunA17_Chr4g0066051 | 28.387 | 155 | 111 | 0 | 42 | 196 | 28 | 182 | 1.36e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1359410 | AT4G19810.2 | 41.159 | 345 | 195 | 3 | 42 | 384 | 28 | 366 | 2.35e-87 | 270 |
| Msa1359410 | AT4G19810.1 | 41.159 | 345 | 195 | 3 | 42 | 384 | 28 | 366 | 2.35e-87 | 270 |
| Msa1359410 | AT4G19800.1 | 40.469 | 341 | 196 | 2 | 42 | 381 | 7 | 341 | 4.78e-82 | 256 |
| Msa1359410 | AT4G19820.1 | 37.971 | 345 | 206 | 3 | 42 | 384 | 26 | 364 | 7.65e-77 | 242 |
| Msa1359410 | AT4G19750.1 | 37.465 | 355 | 209 | 6 | 34 | 381 | 4 | 352 | 9.35e-71 | 226 |
| Msa1359410 | AT4G19760.1 | 37.500 | 368 | 207 | 7 | 34 | 384 | 4 | 365 | 1.13e-70 | 226 |
| Msa1359410 | AT4G19720.1 | 35.674 | 356 | 205 | 5 | 42 | 384 | 6 | 350 | 1.56e-66 | 215 |
| Msa1359410 | AT4G19730.1 | 36.923 | 325 | 185 | 6 | 42 | 352 | 14 | 332 | 3.27e-59 | 195 |
| Msa1359410 | AT4G19770.1 | 39.080 | 261 | 152 | 2 | 123 | 382 | 1 | 255 | 7.79e-55 | 182 |
| Msa1359410 | AT4G19740.1 | 37.755 | 196 | 113 | 4 | 145 | 338 | 23 | 211 | 9.82e-30 | 114 |
Find 110 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATAATAACACCAATTT+TGG | 0.129479 | tig0016715:+38273 | Msa1359410:CDS |
| TCCGAAATTAGTACCAATTT+TGG | 0.140026 | tig0016715:+39003 | Msa1359410:CDS |
| AACATGTCTTGTTGAGTTTC+AGG | 0.150216 | tig0016715:-38724 | None:intergenic |
| GTTTGAAAGGCTATTTCTTT+TGG | 0.192066 | tig0016715:+39334 | Msa1359410:CDS |
| ATCCACGTGGCAAGAAAATA+TGG | 0.199050 | tig0016715:+38670 | Msa1359410:CDS |
| TCCAAAATTGGTACTAATTT+CGG | 0.232381 | tig0016715:-39004 | None:intergenic |
| ATTTCAAGTTTGAAGGAAAT+TGG | 0.266881 | tig0016715:-38481 | None:intergenic |
| CGGGGTGGGAGCGGAGGCGG+TGG | 0.269593 | tig0016715:+39125 | Msa1359410:CDS |
| GTTATGGGTTTGGCTTTATA+TGG | 0.270864 | tig0016715:+39069 | Msa1359410:CDS |
| TGATTGGTGATGTTGGAAAT+TGG | 0.302533 | tig0016715:-38148 | None:intergenic |
| CAACGGGGTGGGAGCGGAGG+CGG | 0.330744 | tig0016715:+39122 | Msa1359410:CDS |
| TTTACTACAATTCTACAATA+AGG | 0.331782 | tig0016715:+38839 | Msa1359410:CDS |
| TTGATGGTGTTGACTTGGAT+TGG | 0.339296 | tig0016715:+38695 | Msa1359410:CDS |
| CCATGAGTGGAGTCCAAAAT+TGG | 0.343332 | tig0016715:-39016 | None:intergenic |
| GCTCCCACCCCGTTGACATT+TGG | 0.345635 | tig0016715:-39114 | None:intergenic |
| TAACTTTGTATCAATTATAA+AGG | 0.353027 | tig0016715:-39994 | None:intergenic |
| CGACCTGAAAAGTTGGTTAT+GGG | 0.357426 | tig0016715:+39054 | Msa1359410:CDS |
| TGAAAAGTTGGTTATGGGTT+TGG | 0.358876 | tig0016715:+39059 | Msa1359410:CDS |
| GGTTCGGTTCGCTAAGTCCT+TGG | 0.378994 | tig0016715:+39311 | Msa1359410:CDS |
| AGTTTGAAGGAAATTGGTTC+TGG | 0.383577 | tig0016715:-38475 | None:intergenic |
| TCGACCTGAAAAGTTGGTTA+TGG | 0.384573 | tig0016715:+39053 | Msa1359410:CDS |
| TGATGGTGTTGACTTGGATT+GGG | 0.393541 | tig0016715:+38696 | Msa1359410:CDS |
| AATTCTACAATAAGGCATAT+TGG | 0.394165 | tig0016715:+38847 | Msa1359410:CDS |
| TGTATCAATTATAAAGGTCT+AGG | 0.402017 | tig0016715:-39988 | None:intergenic |
| TGATGATACATTGAAGAAAA+TGG | 0.402523 | tig0016715:-38308 | None:intergenic |
| CTACCATCCGTGTCAGTTGC+AGG | 0.408728 | tig0016715:-39150 | None:intergenic |
| TGGCTTTATATGGACGGGCG+TGG | 0.410489 | tig0016715:+39079 | Msa1359410:CDS |
| ATTCTTATGCGAGTACTACT+TGG | 0.411139 | tig0016715:+39253 | Msa1359410:CDS |
| TCACCGGCGGGGAACGGTGG+CGG | 0.416311 | tig0016715:-38549 | None:intergenic |
| CTATCAATAAGTACTTAGAT+TGG | 0.421164 | tig0016715:+38902 | Msa1359410:CDS |
| TTGGGCCCTTGGGAAGGATA+AGG | 0.422516 | tig0016715:+39353 | Msa1359410:CDS |
| AAACTTGAAATCACAAAATC+CGG | 0.429982 | tig0016715:+38493 | Msa1359410:CDS |
| TGAAGGATCCAAATGTCAAC+GGG | 0.437680 | tig0016715:+39106 | Msa1359410:CDS |
| GTTCGGTTCGCTAAGTCCTT+GGG | 0.446920 | tig0016715:+39312 | Msa1359410:CDS |
| ACATGGTCCGAGATCGTATC+CGG | 0.447523 | tig0016715:+38873 | Msa1359410:CDS |
| GGCTTTATATGGACGGGCGT+GGG | 0.454743 | tig0016715:+39080 | Msa1359410:CDS |
| GGTACGTGGGATAATAATAC+TGG | 0.460041 | tig0016715:+38952 | Msa1359410:CDS |
| TATTGTAGAATTGTAGTAAA+CGG | 0.462540 | tig0016715:-38836 | None:intergenic |
| CGAACCTTAGCCGTTATTGA+AGG | 0.463955 | tig0016715:-39294 | None:intergenic |
| ACTCCACTCATGGATCAAAT+CGG | 0.467968 | tig0016715:+39026 | Msa1359410:CDS |
| AAATGTCAACGGGGTGGGAG+CGG | 0.470085 | tig0016715:+39116 | Msa1359410:CDS |
| AATGCTATTAAAATTAAGTA+AGG | 0.482276 | tig0016715:-40141 | None:intergenic |
| TGGGTTTGGCTTTATATGGA+CGG | 0.486221 | tig0016715:+39073 | Msa1359410:CDS |
| CTTCAATAACGGCTAAGGTT+CGG | 0.486769 | tig0016715:+39295 | Msa1359410:CDS |
| TGTTTGCTGAAGCCAAGGTT+AGG | 0.488465 | tig0016715:+38785 | Msa1359410:CDS |
| TGTTTGCAGCTTCAAATGCA+TGG | 0.493710 | tig0016715:+39928 | Msa1359410:intron |
| GTTTGCAGCTTCAAATGCAT+GGG | 0.495180 | tig0016715:+39929 | Msa1359410:intron |
| TGGGTTTGATGGTGTTGACT+TGG | 0.495194 | tig0016715:+38690 | Msa1359410:CDS |
| TGCTTTGTTTGCTGAAGCCA+AGG | 0.495351 | tig0016715:+38780 | Msa1359410:CDS |
| TGTCAACGGGGTGGGAGCGG+AGG | 0.495432 | tig0016715:+39119 | Msa1359410:CDS |
| TATCAATAAGTACTTAGATT+GGG | 0.495623 | tig0016715:+38903 | Msa1359410:CDS |
| GGGTTTGGCTTTATATGGAC+GGG | 0.497020 | tig0016715:+39074 | Msa1359410:CDS |
| CTCCACTCATGGATCAAATC+GGG | 0.499458 | tig0016715:+39027 | Msa1359410:CDS |
| CAACAAGACATGTTTAACCT+TGG | 0.500039 | tig0016715:+38733 | Msa1359410:CDS |
| GCAAGAAAATATGGGTTTGA+TGG | 0.503864 | tig0016715:+38679 | Msa1359410:CDS |
| TTGGTTTGTTGTACGAGGAA+TGG | 0.511153 | tig0016715:+38752 | Msa1359410:CDS |
| TTGAAGTTTAATAAAGAGAG+TGG | 0.514869 | tig0016715:+39192 | Msa1359410:CDS |
| AGATCAGCATATTGGCCAGC+AGG | 0.522729 | tig0016715:+38385 | Msa1359410:CDS |
| GCTAAGTCCTTGGGTTTGAA+AGG | 0.525269 | tig0016715:+39321 | Msa1359410:CDS |
| TGGACGGGCGTGGGAGCTGA+AGG | 0.529639 | tig0016715:+39089 | Msa1359410:CDS |
| ATGGTGTTAGATCAGCATAT+TGG | 0.535251 | tig0016715:+38377 | Msa1359410:CDS |
| TACTTATTGATAGCTTGAGC+CGG | 0.537112 | tig0016715:-38892 | None:intergenic |
| ATGCGAGTACTACTTGGATC+GGG | 0.538766 | tig0016715:+39259 | Msa1359410:CDS |
| TCCACGTGGCAAGAAAATAT+GGG | 0.538797 | tig0016715:+38671 | Msa1359410:CDS |
| GCTTGAGCCGGATACGATCT+CGG | 0.541555 | tig0016715:-38880 | None:intergenic |
| AATCCAATAATAAAAGTCAA+GGG | 0.544652 | tig0016715:-38024 | None:intergenic |
| TGATGACGGGCCTTCAATAA+CGG | 0.548821 | tig0016715:+39284 | Msa1359410:CDS |
| GAATCCAATAATAAAAGTCA+AGG | 0.549027 | tig0016715:-38025 | None:intergenic |
| CTTGGATCGGGTATGATGAC+GGG | 0.552269 | tig0016715:+39271 | Msa1359410:CDS |
| ACTTGGATCGGGTATGATGA+CGG | 0.552521 | tig0016715:+39270 | Msa1359410:CDS |
| TCCAATCCTTATCCTTCCCA+AGG | 0.552810 | tig0016715:-39359 | None:intergenic |
| TGCTAATGTTGTGTATGATA+AGG | 0.556900 | tig0016715:+39215 | Msa1359410:CDS |
| CTATGATGAGGGATAAGTGA+TGG | 0.560785 | tig0016715:-38087 | None:intergenic |
| CCCTTGGGAAGGATAAGGAT+TGG | 0.562576 | tig0016715:+39358 | Msa1359410:CDS |
| CGGGCCTTCAATAACGGCTA+AGG | 0.563983 | tig0016715:+39290 | Msa1359410:CDS |
| GATCCAAATGTCAACGGGGT+GGG | 0.564298 | tig0016715:+39111 | Msa1359410:CDS |
| TATGCGAGTACTACTTGGAT+CGG | 0.565120 | tig0016715:+39258 | Msa1359410:CDS |
| GAAATAGCCTTTCAAACCCA+AGG | 0.570698 | tig0016715:-39328 | None:intergenic |
| GTTCTGGTTGAATGAAAGCA+AGG | 0.575522 | tig0016715:-38459 | None:intergenic |
| GGGGTGGGAGCGGAGGCGGT+GGG | 0.578698 | tig0016715:+39126 | Msa1359410:CDS |
| CTGAAGGATCCAAATGTCAA+CGG | 0.582001 | tig0016715:+39105 | Msa1359410:CDS |
| TAGTTTGTGTCAATCAAAGA+AGG | 0.588638 | tig0016715:-38421 | None:intergenic |
| GGGTGTTCGACCTGAAAAGT+TGG | 0.591114 | tig0016715:+39047 | Msa1359410:CDS |
| AAGTAAGGACTAATCTTACA+AGG | 0.601153 | tig0016715:-40126 | None:intergenic |
| GTTTCGATTATCACGGTACG+TGG | 0.604563 | tig0016715:+38938 | Msa1359410:CDS |
| ACTCCGCCACCGTTCCCCGC+CGG | 0.609308 | tig0016715:+38546 | Msa1359410:CDS |
| CCAATCCTTATCCTTCCCAA+GGG | 0.616123 | tig0016715:-39358 | None:intergenic |
| TGAACGGTTCAACTATGATG+AGG | 0.616718 | tig0016715:-38099 | None:intergenic |
| TAACCTTGGTTTGTTGTACG+AGG | 0.617085 | tig0016715:+38747 | Msa1359410:CDS |
| GGTGGGACCTGCAACTGACA+CGG | 0.621426 | tig0016715:+39143 | Msa1359410:CDS |
| ATCCAATAATAAAAGTCAAG+GGG | 0.621819 | tig0016715:-38023 | None:intergenic |
| ATAAGGCATATTGGTAAACA+TGG | 0.622291 | tig0016715:+38856 | Msa1359410:CDS |
| TTGAATTGTTGTGAATTGAA+CGG | 0.622954 | tig0016715:-38115 | None:intergenic |
| GCATATATATAGAGAACAAG+TGG | 0.623772 | tig0016715:-38194 | None:intergenic |
| CCAATGTGTTTCGATTATCA+CGG | 0.625563 | tig0016715:+38931 | Msa1359410:CDS |
| GGATCCAAATGTCAACGGGG+TGG | 0.627972 | tig0016715:+39110 | Msa1359410:CDS |
| GAACGGTTCAACTATGATGA+GGG | 0.630645 | tig0016715:-38098 | None:intergenic |
| AGAATTGTAGTAAACGGCAG+AGG | 0.632126 | tig0016715:-38830 | None:intergenic |
| TTTGCAGCTTCAAATGCATG+GGG | 0.637832 | tig0016715:+39930 | Msa1359410:intron |
| CACCCGATTTGATCCATGAG+TGG | 0.643006 | tig0016715:-39029 | None:intergenic |
| CCGTGATAATCGAAACACAT+TGG | 0.644242 | tig0016715:-38931 | None:intergenic |
| GATTGGACCATCTCAAAACA+AGG | 0.657312 | tig0016715:+39375 | Msa1359410:CDS |
| GGACCTGCAACTGACACGGA+TGG | 0.660097 | tig0016715:+39147 | Msa1359410:CDS |
| ATATATATGATCATAAACCA+TGG | 0.667935 | tig0016715:+38240 | Msa1359410:exon |
| ATTCCTCGTACAACAAACCA+AGG | 0.669048 | tig0016715:-38750 | None:intergenic |
| TTTCGATTATCACGGTACGT+GGG | 0.671850 | tig0016715:+38939 | Msa1359410:CDS |
| AAGGGAACAAAAGTTGAACA+AGG | 0.674562 | tig0016715:-38047 | None:intergenic |
| GCAGAGGTCAAAAGTAAACG+TGG | 0.725267 | tig0016715:-38814 | None:intergenic |
| TATAAATTCAACAATCCACG+TGG | 0.728895 | tig0016715:+38657 | Msa1359410:CDS |
| GAAGGATCCAAATGTCAACG+GGG | 0.809484 | tig0016715:+39107 | Msa1359410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATAAATATATTAT+TGG | + | tig0016715:39608-39627 | Msa1359410:intron | 0.0% |
| !!! | TTTTTAAATAAATATATTAT+TGG | + | tig0016715:39608-39627 | Msa1359410:intron | 0.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | - | tig0016715:38167-38186 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | - | tig0016715:39524-39543 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | + | tig0016715:39549-39568 | Msa1359410:intron | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | - | tig0016715:39997-40016 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+GGG | - | tig0016715:40043-40062 | None:intergenic | 15.0% |
| !! | TAATACTATTCAAAAATATG+AGG | - | tig0016715:40044-40063 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | + | tig0016715:40069-40088 | Msa1359410:three_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | + | tig0016715:40070-40089 | Msa1359410:three_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | tig0016715:40144-40163 | None:intergenic | 15.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | - | tig0016715:38167-38186 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | - | tig0016715:39524-39543 | None:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | + | tig0016715:39549-39568 | Msa1359410:intron | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | - | tig0016715:39997-40016 | None:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+GGG | - | tig0016715:40043-40062 | None:intergenic | 15.0% |
| !! | TAATACTATTCAAAAATATG+AGG | - | tig0016715:40044-40063 | None:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | + | tig0016715:40069-40088 | Msa1359410:three_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | + | tig0016715:40070-40089 | Msa1359410:three_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | tig0016715:40144-40163 | None:intergenic | 15.0% |
| !! | ATATATATGATCATAAACCA+TGG | + | tig0016715:38240-38259 | Msa1359410:exon | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | - | tig0016715:38266-38285 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | - | tig0016715:38270-38289 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | + | tig0016715:38273-38292 | Msa1359410:CDS | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | + | tig0016715:38358-38377 | Msa1359410:CDS | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | - | tig0016715:38366-38385 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | - | tig0016715:38839-38858 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | + | tig0016715:38839-38858 | Msa1359410:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | + | tig0016715:38903-38922 | Msa1359410:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | - | tig0016715:39784-39803 | None:intergenic | 20.0% |
| !! | ATATATATGATCATAAACCA+TGG | + | tig0016715:38240-38259 | Msa1359410:exon | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | - | tig0016715:38266-38285 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | - | tig0016715:38270-38289 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | + | tig0016715:38273-38292 | Msa1359410:CDS | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | + | tig0016715:38358-38377 | Msa1359410:CDS | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | - | tig0016715:38366-38385 | None:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | - | tig0016715:38839-38858 | None:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | + | tig0016715:38839-38858 | Msa1359410:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | + | tig0016715:38903-38922 | Msa1359410:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | - | tig0016715:39784-39803 | None:intergenic | 20.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | - | tig0016715:38118-38137 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | - | tig0016715:38311-38330 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | - | tig0016715:38484-38503 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | - | tig0016715:38491-38510 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | + | tig0016715:38493-38512 | Msa1359410:CDS | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | - | tig0016715:38568-38587 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | + | tig0016715:38568-38587 | Msa1359410:CDS | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | + | tig0016715:38571-38590 | Msa1359410:CDS | 25.0% |
| ! | AATTCTACAATAAGGCATAT+TGG | + | tig0016715:38847-38866 | Msa1359410:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | + | tig0016715:38902-38921 | Msa1359410:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | - | tig0016715:39007-39026 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | + | tig0016715:39192-39211 | Msa1359410:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | + | tig0016715:39335-39354 | Msa1359410:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | - | tig0016715:39732-39751 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | + | tig0016715:39810-39829 | Msa1359410:intron | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | + | tig0016715:39831-39850 | Msa1359410:intron | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | - | tig0016715:39991-40010 | None:intergenic | 25.0% |
| ! | GAATCCAATAATAAAAGTCA+AGG | - | tig0016715:38028-38047 | None:intergenic | 25.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | - | tig0016715:38118-38137 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | - | tig0016715:38311-38330 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | - | tig0016715:38484-38503 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | - | tig0016715:38491-38510 | None:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | + | tig0016715:38493-38512 | Msa1359410:CDS | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | - | tig0016715:38568-38587 | None:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | + | tig0016715:38568-38587 | Msa1359410:CDS | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | + | tig0016715:38571-38590 | Msa1359410:CDS | 25.0% |
| ! | AATTCTACAATAAGGCATAT+TGG | + | tig0016715:38847-38866 | Msa1359410:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | + | tig0016715:38902-38921 | Msa1359410:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | - | tig0016715:39007-39026 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | + | tig0016715:39192-39211 | Msa1359410:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | + | tig0016715:39335-39354 | Msa1359410:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | - | tig0016715:39732-39751 | None:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | + | tig0016715:39810-39829 | Msa1359410:intron | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | + | tig0016715:39831-39850 | Msa1359410:intron | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | - | tig0016715:39991-40010 | None:intergenic | 25.0% |
| GAGAGAAAAATCAAAGACAA+GGG | - | tig0016715:38068-38087 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | - | tig0016715:38158-38177 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | - | tig0016715:38197-38216 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | - | tig0016715:38289-38308 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | - | tig0016715:38424-38443 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | + | tig0016715:38657-38676 | Msa1359410:CDS | 30.0% | |
| ATAAGGCATATTGGTAAACA+TGG | + | tig0016715:38856-38875 | Msa1359410:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | + | tig0016715:39003-39022 | Msa1359410:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | + | tig0016715:39215-39234 | Msa1359410:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | + | tig0016715:39334-39353 | Msa1359410:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | + | tig0016715:39578-39597 | Msa1359410:intron | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | + | tig0016715:39848-39867 | Msa1359410:intron | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | + | tig0016715:39849-39868 | Msa1359410:intron | 30.0% |
| CACAAATATAAGAAGACATC+AGG | - | tig0016715:39899-39918 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | tig0016715:40113-40132 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | tig0016715:40114-40133 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | - | tig0016715:40129-40148 | None:intergenic | 30.0% | |
| GAGAGAAAAATCAAAGACAA+GGG | - | tig0016715:38068-38087 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | - | tig0016715:38158-38177 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | - | tig0016715:38197-38216 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | - | tig0016715:38289-38308 | None:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | - | tig0016715:38424-38443 | None:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | + | tig0016715:38657-38676 | Msa1359410:CDS | 30.0% | |
| ATAAGGCATATTGGTAAACA+TGG | + | tig0016715:38856-38875 | Msa1359410:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | + | tig0016715:39003-39022 | Msa1359410:CDS | 30.0% |
| TGCTAATGTTGTGTATGATA+AGG | + | tig0016715:39215-39234 | Msa1359410:CDS | 30.0% | |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | + | tig0016715:39334-39353 | Msa1359410:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | + | tig0016715:39578-39597 | Msa1359410:intron | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | + | tig0016715:39848-39867 | Msa1359410:intron | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | + | tig0016715:39849-39868 | Msa1359410:intron | 30.0% |
| CACAAATATAAGAAGACATC+AGG | - | tig0016715:39899-39918 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | tig0016715:40113-40132 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | tig0016715:40114-40133 | None:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | - | tig0016715:40129-40148 | None:intergenic | 30.0% | |
| AAGGGAACAAAAGTTGAACA+AGG | - | tig0016715:38050-38069 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | - | tig0016715:38069-38088 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | - | tig0016715:38151-38170 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | + | tig0016715:38377-38396 | Msa1359410:CDS | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | - | tig0016715:38478-38497 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | + | tig0016715:38503-38522 | Msa1359410:CDS | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | + | tig0016715:38504-38523 | Msa1359410:CDS | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | + | tig0016715:38505-38524 | Msa1359410:CDS | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | + | tig0016715:38574-38593 | Msa1359410:CDS | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | + | tig0016715:38679-38698 | Msa1359410:CDS | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | - | tig0016715:38727-38746 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | + | tig0016715:38733-38752 | Msa1359410:CDS | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | - | tig0016715:38895-38914 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | + | tig0016715:38931-38950 | Msa1359410:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | - | tig0016715:39060-39079 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | + | tig0016715:39059-39078 | Msa1359410:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | + | tig0016715:39069-39088 | Msa1359410:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | + | tig0016715:39253-39272 | Msa1359410:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | - | tig0016715:39385-39404 | None:intergenic | 35.0% |
| AAGGGAACAAAAGTTGAACA+AGG | - | tig0016715:38050-38069 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | - | tig0016715:38069-38088 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | - | tig0016715:38151-38170 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | + | tig0016715:38377-38396 | Msa1359410:CDS | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | - | tig0016715:38478-38497 | None:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | + | tig0016715:38503-38522 | Msa1359410:CDS | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | + | tig0016715:38504-38523 | Msa1359410:CDS | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | + | tig0016715:38505-38524 | Msa1359410:CDS | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | + | tig0016715:38574-38593 | Msa1359410:CDS | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | + | tig0016715:38679-38698 | Msa1359410:CDS | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | - | tig0016715:38727-38746 | None:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | + | tig0016715:38733-38752 | Msa1359410:CDS | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | - | tig0016715:38895-38914 | None:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | + | tig0016715:38931-38950 | Msa1359410:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | - | tig0016715:39060-39079 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | + | tig0016715:39059-39078 | Msa1359410:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | + | tig0016715:39069-39088 | Msa1359410:CDS | 35.0% |
| ATTCTTATGCGAGTACTACT+TGG | + | tig0016715:39253-39272 | Msa1359410:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | - | tig0016715:39385-39404 | None:intergenic | 35.0% |
| CTATGATGAGGGATAAGTGA+TGG | - | tig0016715:38090-38109 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | - | tig0016715:38101-38120 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | - | tig0016715:38102-38121 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | - | tig0016715:38260-38279 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | - | tig0016715:38462-38481 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | - | tig0016715:38515-38534 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | - | tig0016715:38564-38583 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | - | tig0016715:38565-38584 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | + | tig0016715:38577-38596 | Msa1359410:CDS | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | + | tig0016715:38670-38689 | Msa1359410:CDS | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | + | tig0016715:38671-38690 | Msa1359410:CDS | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | + | tig0016715:38695-38714 | Msa1359410:CDS | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | + | tig0016715:38696-38715 | Msa1359410:CDS | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | + | tig0016715:38747-38766 | Msa1359410:CDS | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | - | tig0016715:38753-38772 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | + | tig0016715:38752-38771 | Msa1359410:CDS | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | - | tig0016715:38833-38852 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | - | tig0016715:38934-38953 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | + | tig0016715:38939-38958 | Msa1359410:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | + | tig0016715:38952-38971 | Msa1359410:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | + | tig0016715:39026-39045 | Msa1359410:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | + | tig0016715:39053-39072 | Msa1359410:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | + | tig0016715:39054-39073 | Msa1359410:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | + | tig0016715:39073-39092 | Msa1359410:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | + | tig0016715:39105-39124 | Msa1359410:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | + | tig0016715:39106-39125 | Msa1359410:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | + | tig0016715:39258-39277 | Msa1359410:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | + | tig0016715:39295-39314 | Msa1359410:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | - | tig0016715:39331-39350 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | + | tig0016715:39375-39394 | Msa1359410:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | + | tig0016715:39928-39947 | Msa1359410:intron | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | + | tig0016715:39929-39948 | Msa1359410:intron | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | + | tig0016715:39930-39949 | Msa1359410:intron | 40.0% | |
| CTATGATGAGGGATAAGTGA+TGG | - | tig0016715:38090-38109 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | - | tig0016715:38101-38120 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | - | tig0016715:38102-38121 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | - | tig0016715:38260-38279 | None:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | - | tig0016715:38462-38481 | None:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | - | tig0016715:38515-38534 | None:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | - | tig0016715:38564-38583 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | - | tig0016715:38565-38584 | None:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | + | tig0016715:38577-38596 | Msa1359410:CDS | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | + | tig0016715:38670-38689 | Msa1359410:CDS | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | + | tig0016715:38671-38690 | Msa1359410:CDS | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | + | tig0016715:38695-38714 | Msa1359410:CDS | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | + | tig0016715:38696-38715 | Msa1359410:CDS | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | + | tig0016715:38747-38766 | Msa1359410:CDS | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | - | tig0016715:38753-38772 | None:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | + | tig0016715:38752-38771 | Msa1359410:CDS | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | - | tig0016715:38833-38852 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | - | tig0016715:38934-38953 | None:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | + | tig0016715:38939-38958 | Msa1359410:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | + | tig0016715:38952-38971 | Msa1359410:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | + | tig0016715:39026-39045 | Msa1359410:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | + | tig0016715:39053-39072 | Msa1359410:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | + | tig0016715:39054-39073 | Msa1359410:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | + | tig0016715:39073-39092 | Msa1359410:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | + | tig0016715:39105-39124 | Msa1359410:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | + | tig0016715:39106-39125 | Msa1359410:CDS | 40.0% | |
| TATGCGAGTACTACTTGGAT+CGG | + | tig0016715:39258-39277 | Msa1359410:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | + | tig0016715:39295-39314 | Msa1359410:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | - | tig0016715:39331-39350 | None:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | + | tig0016715:39375-39394 | Msa1359410:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | + | tig0016715:39928-39947 | Msa1359410:intron | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | + | tig0016715:39929-39948 | Msa1359410:intron | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | + | tig0016715:39930-39949 | Msa1359410:intron | 40.0% | |
| GGTGAAAAATCATCACCTGC+TGG | - | tig0016715:38403-38422 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | - | tig0016715:38563-38582 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | - | tig0016715:38675-38694 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | + | tig0016715:38690-38709 | Msa1359410:CDS | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | + | tig0016715:38780-38799 | Msa1359410:CDS | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | + | tig0016715:38785-38804 | Msa1359410:CDS | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | - | tig0016715:38800-38819 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | - | tig0016715:38817-38836 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | + | tig0016715:38938-38957 | Msa1359410:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | - | tig0016715:39019-39038 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | + | tig0016715:39016-39035 | Msa1359410:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | + | tig0016715:39027-39046 | Msa1359410:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | + | tig0016715:39074-39093 | Msa1359410:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | + | tig0016715:39107-39126 | Msa1359410:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | + | tig0016715:39259-39278 | Msa1359410:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | + | tig0016715:39270-39289 | Msa1359410:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | + | tig0016715:39284-39303 | Msa1359410:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | - | tig0016715:39297-39316 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | + | tig0016715:39321-39340 | Msa1359410:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | + | tig0016715:39343-39362 | Msa1359410:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | - | tig0016715:39361-39380 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | - | tig0016715:39362-39381 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | + | tig0016715:39857-39876 | Msa1359410:intron | 45.0% | |
| GGTGAAAAATCATCACCTGC+TGG | - | tig0016715:38403-38422 | None:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | - | tig0016715:38563-38582 | None:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | - | tig0016715:38675-38694 | None:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | + | tig0016715:38690-38709 | Msa1359410:CDS | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | + | tig0016715:38780-38799 | Msa1359410:CDS | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | + | tig0016715:38785-38804 | Msa1359410:CDS | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | - | tig0016715:38800-38819 | None:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | - | tig0016715:38817-38836 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | + | tig0016715:38938-38957 | Msa1359410:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | - | tig0016715:39019-39038 | None:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | + | tig0016715:39016-39035 | Msa1359410:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | + | tig0016715:39027-39046 | Msa1359410:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | + | tig0016715:39074-39093 | Msa1359410:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | + | tig0016715:39107-39126 | Msa1359410:CDS | 45.0% | |
| ATGCGAGTACTACTTGGATC+GGG | + | tig0016715:39259-39278 | Msa1359410:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | + | tig0016715:39270-39289 | Msa1359410:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | + | tig0016715:39284-39303 | Msa1359410:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | - | tig0016715:39297-39316 | None:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | + | tig0016715:39321-39340 | Msa1359410:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | + | tig0016715:39343-39362 | Msa1359410:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | - | tig0016715:39361-39380 | None:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | - | tig0016715:39362-39381 | None:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | + | tig0016715:39857-39876 | Msa1359410:intron | 45.0% | |
| !!! | AAAAAATGTATTTATATTTT+TGG | - | tig0016715:39446-39465 | None:intergenic | 5.0% |
| !!! | AAAAAATGTATTTATATTTT+TGG | - | tig0016715:39446-39465 | None:intergenic | 5.0% |
| AGATCAGCATATTGGCCAGC+AGG | + | tig0016715:38385-38404 | Msa1359410:CDS | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | + | tig0016715:38873-38892 | Msa1359410:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | - | tig0016715:39032-39051 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | + | tig0016715:39047-39066 | Msa1359410:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | + | tig0016715:39111-39130 | Msa1359410:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | + | tig0016715:39271-39290 | Msa1359410:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | + | tig0016715:39312-39331 | Msa1359410:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | + | tig0016715:39342-39361 | Msa1359410:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | + | tig0016715:39347-39366 | Msa1359410:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | + | tig0016715:39358-39377 | Msa1359410:CDS | 50.0% | |
| AGATCAGCATATTGGCCAGC+AGG | + | tig0016715:38385-38404 | Msa1359410:CDS | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | + | tig0016715:38873-38892 | Msa1359410:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | - | tig0016715:39032-39051 | None:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | + | tig0016715:39047-39066 | Msa1359410:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | + | tig0016715:39111-39130 | Msa1359410:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | + | tig0016715:39271-39290 | Msa1359410:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | + | tig0016715:39312-39331 | Msa1359410:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | + | tig0016715:39342-39361 | Msa1359410:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | + | tig0016715:39347-39366 | Msa1359410:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | + | tig0016715:39358-39377 | Msa1359410:CDS | 50.0% | |
| GCTTGAGCCGGATACGATCT+CGG | - | tig0016715:38883-38902 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | + | tig0016715:39079-39098 | Msa1359410:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | + | tig0016715:39080-39099 | Msa1359410:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | + | tig0016715:39110-39129 | Msa1359410:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | + | tig0016715:39116-39135 | Msa1359410:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | - | tig0016715:39153-39172 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | + | tig0016715:39290-39309 | Msa1359410:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | + | tig0016715:39311-39330 | Msa1359410:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | + | tig0016715:39353-39372 | Msa1359410:CDS | 55.0% | |
| GCTTGAGCCGGATACGATCT+CGG | - | tig0016715:38883-38902 | None:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | + | tig0016715:39079-39098 | Msa1359410:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | + | tig0016715:39080-39099 | Msa1359410:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | + | tig0016715:39110-39129 | Msa1359410:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | + | tig0016715:39116-39135 | Msa1359410:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | - | tig0016715:39153-39172 | None:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | + | tig0016715:39290-39309 | Msa1359410:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | + | tig0016715:39311-39330 | Msa1359410:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | + | tig0016715:39353-39372 | Msa1359410:CDS | 55.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | - | tig0016715:38558-38577 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | - | tig0016715:39117-39136 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | + | tig0016715:39143-39162 | Msa1359410:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | + | tig0016715:39147-39166 | Msa1359410:CDS | 60.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | - | tig0016715:38558-38577 | None:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | - | tig0016715:39117-39136 | None:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | + | tig0016715:39143-39162 | Msa1359410:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | + | tig0016715:39147-39166 | Msa1359410:CDS | 60.0% | |
| ! | TTTTCACCGGCGGGGAACGG+TGG | - | tig0016715:38555-38574 | None:intergenic | 65.0% |
| ! | TTTTCACCGGCGGGGAACGG+TGG | - | tig0016715:38555-38574 | None:intergenic | 65.0% |
| TGGACGGGCGTGGGAGCTGA+AGG | + | tig0016715:39089-39108 | Msa1359410:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | + | tig0016715:39119-39138 | Msa1359410:CDS | 70.0% | |
| TGGACGGGCGTGGGAGCTGA+AGG | + | tig0016715:39089-39108 | Msa1359410:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | + | tig0016715:39119-39138 | Msa1359410:CDS | 70.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | + | tig0016715:38546-38565 | Msa1359410:CDS | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | - | tig0016715:38552-38571 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | + | tig0016715:39122-39141 | Msa1359410:CDS | 75.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | + | tig0016715:38546-38565 | Msa1359410:CDS | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | - | tig0016715:38552-38571 | None:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | + | tig0016715:39122-39141 | Msa1359410:CDS | 75.0% | |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | + | tig0016715:39126-39145 | Msa1359410:CDS | 80.0% |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | + | tig0016715:39126-39145 | Msa1359410:CDS | 80.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | + | tig0016715:39125-39144 | Msa1359410:CDS | 85.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | + | tig0016715:39125-39144 | Msa1359410:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016715 | gene | 38026 | 40170 | 38026 | ID=Msa1359410;Name=Msa1359410 |
| tig0016715 | mRNA | 38026 | 40170 | 38026 | ID=Msa1359410-mRNA-1;Parent=Msa1359410;Name=Msa1359410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|211|386 |
| tig0016715 | exon | 38026 | 39396 | 38026 | ID=Msa1359410-mRNA-1:exon:11321;Parent=Msa1359410-mRNA-1 |
| tig0016715 | exon | 39937 | 40170 | 39937 | ID=Msa1359410-mRNA-1:exon:11322;Parent=Msa1359410-mRNA-1 |
| tig0016715 | five_prime_UTR | 38026 | 38258 | 38026 | ID=Msa1359410-mRNA-1:five_prime_utr;Parent=Msa1359410-mRNA-1 |
| tig0016715 | CDS | 38259 | 39396 | 38259 | ID=Msa1359410-mRNA-1:cds;Parent=Msa1359410-mRNA-1 |
| tig0016715 | CDS | 39937 | 39959 | 39937 | ID=Msa1359410-mRNA-1:cds;Parent=Msa1359410-mRNA-1 |
| tig0016715 | three_prime_UTR | 39960 | 40170 | 39960 | ID=Msa1359410-mRNA-1:three_prime_utr;Parent=Msa1359410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
