AlfalfaGEDB | Msa0102040

M. sativa cultivar zhongmu-4 / Msa0102040

KEGG: K20890
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0008194 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0015020 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0046527 GO:0055114 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576
PFAM: PF01501.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102040	XP_024629100.2	75.891	589	91	8	1	547	1	580	0.0	848
Msa0102040	XP_024629100.2	81.757	592	46	4	547	1076	1	592	0.0	947

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102040	sp\|Q8GWW4\|GUX2_ARATH	55.938	581	203	11	13	547	11	584	0.0	637
Msa0102040	sp\|Q8GWW4\|GUX2_ARATH	54.608	586	196	9	559	1075	11	595	0.0	634

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102040	G7I3L2	75.891	589	91	8	1	547	1	580	0.0	848
Msa0102040	G7I3L2	81.757	592	46	4	547	1076	1	592	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102040	Msa0235710	0.802230	6.191161e-49	-8.615850e-47
Msa0102040	Msa0274440	0.818235	2.178511e-52	-8.615850e-47
Msa0102040	Msa1043720	0.848429	6.166134e-60	-8.615850e-47
Msa0102040	Msa1446110	0.814070	1.857390e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102040	MtrunA17_Chr1g0153481	84.354	588	47	7	1	547	1	584	0.0	950
Msa0102040	MtrunA17_Chr1g0153481	77.889	597	64	5	547	1076	1	596	0.0	905
Msa0102040	MtrunA17_Chr1g0153471	81.757	592	46	4	547	1076	1	592	0.0	947
Msa0102040	MtrunA17_Chr1g0153471	75.891	589	91	8	1	547	1	580	0.0	848
Msa0102040	MtrunA17_Chr1g0159301	40.966	476	213	8	652	1068	135	601	6.17e-116	372
Msa0102040	MtrunA17_Chr1g0159301	40.956	481	227	11	106	547	135	597	5.32e-110	356
Msa0102040	MtrunA17_Chr7g0272921	37.624	505	225	8	649	1073	66	560	9.69e-109	350
Msa0102040	MtrunA17_Chr7g0272921	38.784	477	222	10	125	547	91	551	7.76e-103	334
Msa0102040	MtrunA17_Chr3g0129911	39.919	491	235	13	106	556	128	598	6.32e-106	345
Msa0102040	MtrunA17_Chr3g0129911	39.331	478	217	10	652	1068	128	593	6.94e-106	345

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102040	AT4G33330.2	55.938	581	203	11	13	547	11	584	0.0	637
Msa0102040	AT4G33330.2	54.922	579	191	9	559	1068	11	588	0.0	632
Msa0102040	AT4G33330.4	55.938	581	203	11	13	547	22	595	0.0	637
Msa0102040	AT4G33330.4	54.608	586	196	9	559	1075	22	606	0.0	634
Msa0102040	AT4G33330.1	55.938	581	203	11	13	547	11	584	0.0	637
Msa0102040	AT4G33330.1	54.608	586	196	9	559	1075	11	595	0.0	634
Msa0102040	AT4G33330.5	58.730	504	156	10	89	547	20	516	0.0	584
Msa0102040	AT4G33330.5	56.178	518	158	8	626	1075	11	527	0.0	578
Msa0102040	AT4G33330.3	53.422	453	167	10	13	428	22	467	3.37e-149	454
Msa0102040	AT4G33330.3	49.888	447	154	9	559	936	22	467	1.23e-134	416

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Find 221 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAGTTAGAATTTCT+AGG	0.308497	1_3:-8737533	None:intergenic
AAACTACCTGAAGGTACAAT+TGG	0.395841	1_3:-8732851	None:intergenic
AAATTCTGGCATTGGTAACT+CGG	0.455255	1_3:-8730932	None:intergenic
AACATACCTTGTTCCCATAT+AGG	0.468501	1_3:-8736134	None:intergenic
AACCGGCACCTGCCAATGCA+CGG	0.534207	1_3:-8732591	None:intergenic
AACGTAGGACTGAGTTGAAT+TGG	0.320185	1_3:+8733350	Msa0102040:CDS
AAGAAGAAGGACGGAGAAGA+AGG	0.443972	1_3:-8730405	None:intergenic
AAGAAGGCAGACGGAGAAGA+AGG	0.440509	1_3:-8735161	None:intergenic
AAGACGACGACATAAGTGAA+TGG	0.569835	1_3:+8735661	Msa0102040:CDS
AAGACGATGATGTAAGCGAA+TGG	0.598071	1_3:+8730791	Msa0102040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGGAGATTGGAACAAAA+TGG	-	chr1_3:8730050-8730069	None:intergenic	30.0%
CATTTGTCCTTAGACAATAT+TGG	-	chr1_3:8730067-8730086	None:intergenic	30.0%
CAATATTGTCTAAGGACAAA+TGG	+	chr1_3:8730065-8730084	Msa0102040:five_prime_UTR	30.0%
GACAAATGGAGCTATATAAA+TGG	+	chr1_3:8730079-8730098	Msa0102040:five_prime_UTR	30.0%
CACATCCTAATTTATGAAAG+AGG	+	chr1_3:8730198-8730217	Msa0102040:five_prime_UTR	30.0%
GAATCCCTCTTTCATAAATT+AGG	-	chr1_3:8730206-8730225	None:intergenic	30.0%
ATAACAGTGCCTAAAATGAA+GGG	-	chr1_3:8730252-8730271	None:intergenic	30.0%
AATAACAGTGCCTAAAATGA+AGG	-	chr1_3:8730253-8730272	None:intergenic	30.0%
GAATCTCATAATCAAAGCTT+TGG	-	chr1_3:8730344-8730363	None:intergenic	30.0%
TGCATAAACAATCAGAAAGA+TGG	-	chr1_3:8730383-8730402	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	8729974	8737565	8729974	ID=Msa0102040;Name=Msa0102040
chr1_3	mRNA	8729974	8737565	8729974	ID=Msa0102040-mRNA-1;Parent=Msa0102040;Name=Msa0102040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=324\|0.2\|0.06\|1\|0.4\|0.18\|16\|0\|1076
chr1_3	exon	8729974	8730489	8729974	ID=Msa0102040-mRNA-1:exon:3478;Parent=Msa0102040-mRNA-1
chr1_3	exon	8730637	8730733	8730637	ID=Msa0102040-mRNA-1:exon:3479;Parent=Msa0102040-mRNA-1
chr1_3	exon	8730743	8730989	8730743	ID=Msa0102040-mRNA-1:exon:3480;Parent=Msa0102040-mRNA-1
chr1_3	exon	8731038	8731279	8731038	ID=Msa0102040-mRNA-1:exon:3481;Parent=Msa0102040-mRNA-1
chr1_3	exon	8732386	8732544	8732386	ID=Msa0102040-mRNA-1:exon:3482;Parent=Msa0102040-mRNA-1
chr1_3	exon	8732570	8732685	8732570	ID=Msa0102040-mRNA-1:exon:3483;Parent=Msa0102040-mRNA-1
chr1_3	exon	8732691	8732866	8732691	ID=Msa0102040-mRNA-1:exon:3484;Parent=Msa0102040-mRNA-1
chr1_3	exon	8732991	8733196	8732991	ID=Msa0102040-mRNA-1:exon:3485;Parent=Msa0102040-mRNA-1
chr1_3	exon	8733224	8733426	8733224	ID=Msa0102040-mRNA-1:exon:3486;Parent=Msa0102040-mRNA-1
chr1_3	exon	8735054	8735245	8735054	ID=Msa0102040-mRNA-1:exon:3487;Parent=Msa0102040-mRNA-1
chr1_3	exon	8735507	8735603	8735507	ID=Msa0102040-mRNA-1:exon:3488;Parent=Msa0102040-mRNA-1
chr1_3	exon	8735613	8735859	8735613	ID=Msa0102040-mRNA-1:exon:3489;Parent=Msa0102040-mRNA-1
chr1_3	exon	8735908	8736149	8735908	ID=Msa0102040-mRNA-1:exon:3490;Parent=Msa0102040-mRNA-1
chr1_3	exon	8736508	8736714	8736508	ID=Msa0102040-mRNA-1:exon:3491;Parent=Msa0102040-mRNA-1
chr1_3	exon	8736841	8736970	8736841	ID=Msa0102040-mRNA-1:exon:3492;Parent=Msa0102040-mRNA-1
chr1_3	exon	8737088	8737565	8737088	ID=Msa0102040-mRNA-1:exon:3493;Parent=Msa0102040-mRNA-1
chr1_3	five_prime_UTR	8729974	8730297	8729974	ID=Msa0102040-mRNA-1:five_prime_utr;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8730298	8730489	8730298	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8730637	8730733	8730637	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8730743	8730989	8730743	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8731038	8731279	8731038	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8732386	8732544	8732386	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8732570	8732685	8732570	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8732691	8732866	8732691	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8732991	8733196	8732991	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8733224	8733426	8733224	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8735054	8735245	8735054	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8735507	8735603	8735507	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8735613	8735859	8735613	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8735908	8736149	8735908	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8736508	8736714	8736508	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8736841	8736970	8736841	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3	CDS	8737088	8737565	8737088	ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1

Gene Sequence

>Msa0102040

ATGGATGTTTCAAATCTTCATAAGTTGGTGAAGACAGCACCATCCAAAGCTTTGATTATGAGATTCAATTTGTTATGTCTTTCCATCTTTCTGATTGTTTATGCAACCCTTCTTCTCCGTCCTTCTTCTTCGGTCTATTTCGATAATGCAGCTTCACTTGTTAGATGTTCATTGAGAGAATGCCATCACAAGGGAGAAAATAGCATAAAAATCAAAGCAGTGTTAGAGGAATTACCAAAAGCAAAATCAAGGAATCCAAAGAAGAATGGAACTAAGATAGAAGTACCAAGCGAAAAAATCGGTAAAGGAATGAAAATTGGAACGGTGAACATGGATGAAGACGATGATGTAAGCGAATGGAACATACATGGAGAAACAATACCAATTAATTTCGACAAAGTATCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATCGATGAAGAAGAAGAAAGCGACGTTCCAACATGTCCCGAGTTACCAATGCCAGAATTTGCAACATATGAAAACATGGACATAATAGTTGCCAAGTTACAAGTCCATCTTATTGTAGCAAATATGGTTGTGAAAAAGGGGAAGAATGATTGGAAATGGAAGAGTAAGGTTGTGTTTTGGAGTAAATGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTAAAAATGAAGGTGATTGGTGGTTTTATGAAGTTGATGTAAAGAAGTTGGAACAGAAAATTTCTTTGCCTGTTGGGTCTTGTAATTTGGCTTTGCCTCTATGGGAACAAGGGATTGACAAAGTTTACGACATGTCCAAAATGGAACAAAACGTAAGAAGCAAAACAAGAGCAAAACATGAAGCCTATGCAACAGTCCTACACTCTTCAGAAAGCTACGTTTGTGGAGCAATAACACTTGCACAAAGCCTCTTAAAAACAGGAACCAAACCTCCATCTCCGTCCGCAAACGCCGTGCATTGGCAGGTGCCGGTTGGCAGATTCGAACCATCACCCGAATCCGAAACCCGAGAGCAGAAAATGGAACATACAATGAGTATAATTATATTCCGGTTGTGGCAACTTACTGATTATGAGAAAATCATCTTTATAGATTCTGATATTCTTGTGCTGAGGAATCTTGATATTCTCTTCAACTTTCCTCAAATGTCTGCCACTGGGAATGATCAGTCCATTTTCAACTCTGGCATCATGGTTATTGAGCCTTCCAATTGTACCTTCAGTGTGCTTATGAGCCGGCGCCACGACATTGTATCATACAATGGAGGTGATCAAGGGTTTCTAAATGAGATATTTGTGTGGTGGCATAGACTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGGCCAACACAACAGTAGAAGCAAGTGTGAAAAATGGCTTATTTAGTGCTGACCCTCCAAAACTATATGCCATTCACTACCTTGACTATGACTGCAATTGGGATGTGGTGGATCAAAGGGTTTATGGTAGTGACGTGGCGCACCAACGTTGGTGGAATTTTCATGATAGAATGGACAAGAAGTTACAAAGTTTTTGTAGGTTGACAAGACAACGTAGGACTGAGTTGAATTGGGAAAGGAGAAGATCTTATAAGATGGGATCACTTGATTATCATTGGAAGATTAATATGGATGTTTCAAATGTTAATAAGTTGGTGAAGAGAGCACCATCCAAAACTTTGGTGGTCCGATTCAATTTGTTCTGTTTTGCCATCTTTCTGATTGTTTATGCAACCCTTCTTCTCCGTCTGCCTTCTTCGGTCTATTTTGATAGTGCAGCCTCACTTGTTGGATGCTCTTTGAGAGAATGCCATCACAAGGGAGAAAAAGGCATAAAAATGAAAGCGGCGTTAGAGGAATTACCAAATCAAAAATCATGGAGGCCAAAGACAAATGGAACTAAAATAGAAGTACCAAGCGAAATAATCGGTAAAGAAATGAAAATTGGAATGGTGAACATGAATGAAGACGACGACATAAGTGAATGGAACATACATGGAGAAATAATACCAATTAATTTCGATAAAGCATCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATCGACGAAGAAGAAGAAAGCGACGTTCCAACATGTCCCGAGTTACCAATGCCAGAATTCACAACATATGAAAACATGGACATAATAGTTGCAAAGTTACAAGTTCATCTTATTGTAGCAAATATGGTTGTGAAGAAAGGGAAGAAAAATTGGAAATGGAAGAGTAGAGTTGTGTTTTGGAGTAAGTGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTAAACATGAAGGTGATTGGTGGTTTTTTGAGGTTGATGTAAAGAGATTGGAGCAGAAAGTTTCTTTGCCTATTGGTTCGTGTAGTTTAGCTTTGCCTATATGGGAACAAGGGATAGACAAAATGGAACAAAATGTAAGAAGCAAAACAAGAGCAAAACATGAAGCCTATGCAACAGTCCTACACTCTTCAGAAAGATACGTTTGTGGAGCAATAACACTTGCACAAAGCCTATTAAAAACAGGAACCAAACGTGACCTTATACTTCTCATTGACAGCTCCATCTCCGTCCGCAAACGTCATGCCTTGGCGGACGCAGACTCCGATATCTTTGTGCTGAGGAATCTTGATATTCTCTTCAACTTTCCTCAAATGTCTGCTACTGGTAATGCTCGATCCATTTTCAACGCTGGGATGATGATTATCGAGCCCTCTAATTGCACCTTCAGTGTGCTGATGAACCTGCGCCACGACATTGTATCATACACCGGAGGTGACCAAGGATTCATGAACGAGATCTTTGTATGGTGGCATAGGCTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGACCAACACAACAGTAGAAGCAAGTGTGAAAAATGGATTATTTGGTTCTGACCCTCCAAAACTATATGCTATTCACTACCTTGGTTTGAAACCTTGGCATTGCTATAGAGACTATGATTGCAATTGGGATGTAGTGGATCAAAGGGTTTATGCTAGTGATGTGGCACACCAACGTTGGTGGAAATTTCATGATAGAATGGACAAGAAGTTACAAAGTTTTTGTAGGTTGACAAAAGAACGTAGGACTGAGTTAAATATGGAACGGAGAAGATCTAGTAAGATGGGATCACTTGATTATCATTGGAAGATTAATGTCACTGATCCTAGAAATTCTAACTCTCTTTTGATGGATTAA

Protein sequence

>Msa0102040

MDVSNLHKLVKTAPSKALIMRFNLLCLSIFLIVYATLLLRPSSSVYFDNAASLVRCSLRECHHKGENSIKIKAVLEELPKAKSRNPKKNGTKIEVPSEKIGKGMKIGTVNMDEDDDVSEWNIHGETIPINFDKVSQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFATYENMDIIVAKLQVHLIVANMVVKKGKNDWKWKSKVVFWSKCRPMLEIFRCDDLVKNEGDWWFYEVDVKKLEQKISLPVGSCNLALPLWEQGIDKVYDMSKMEQNVRSKTRAKHEAYATVLHSSESYVCGAITLAQSLLKTGTKPPSPSANAVHWQVPVGRFEPSPESETREQKMEHTMSIIIFRLWQLTDYEKIIFIDSDILVLRNLDILFNFPQMSATGNDQSIFNSGIMVIEPSNCTFSVLMSRRHDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTVEASVKNGLFSADPPKLYAIHYLDYDCNWDVVDQRVYGSDVAHQRWWNFHDRMDKKLQSFCRLTRQRRTELNWERRRSYKMGSLDYHWKINMDVSNVNKLVKRAPSKTLVVRFNLFCFAIFLIVYATLLLRLPSSVYFDSAASLVGCSLRECHHKGEKGIKMKAALEELPNQKSWRPKTNGTKIEVPSEIIGKEMKIGMVNMNEDDDISEWNIHGEIIPINFDKASQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFTTYENMDIIVAKLQVHLIVANMVVKKGKKNWKWKSRVVFWSKCRPMLEIFRCDDLVKHEGDWWFFEVDVKRLEQKVSLPIGSCSLALPIWEQGIDKMEQNVRSKTRAKHEAYATVLHSSERYVCGAITLAQSLLKTGTKRDLILLIDSSISVRKRHALADADSDIFVLRNLDILFNFPQMSATGNARSIFNAGMMIIEPSNCTFSVLMNLRHDIVSYTGGDQGFMNEIFVWWHRLPRRVNYLKNFWTNTTVEASVKNGLFGSDPPKLYAIHYLGLKPWHCYRDYDCNWDVVDQRVYASDVAHQRWWKFHDRMDKKLQSFCRLTKERRTELNMERRRSSKMGSLDYHWKINVTDPRNSNSLLMD*