AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102040 MtrunA17_Chr1g0153481 84.354 588 47 7 1 547 1 584 0.0 950
Msa0102040 MtrunA17_Chr1g0153481 77.889 597 64 5 547 1076 1 596 0.0 905
Msa0102040 MtrunA17_Chr1g0153471 81.757 592 46 4 547 1076 1 592 0.0 947
Msa0102040 MtrunA17_Chr1g0153471 75.891 589 91 8 1 547 1 580 0.0 848
Msa0102040 MtrunA17_Chr1g0159301 40.966 476 213 8 652 1068 135 601 6.17e-116 372
Msa0102040 MtrunA17_Chr1g0159301 40.956 481 227 11 106 547 135 597 5.32e-110 356
Msa0102040 MtrunA17_Chr7g0272921 37.624 505 225 8 649 1073 66 560 9.69e-109 350
Msa0102040 MtrunA17_Chr7g0272921 38.784 477 222 10 125 547 91 551 7.76e-103 334
Msa0102040 MtrunA17_Chr3g0129911 39.919 491 235 13 106 556 128 598 6.32e-106 345
Msa0102040 MtrunA17_Chr3g0129911 39.331 478 217 10 652 1068 128 593 6.94e-106 345
Msa0102040 MtrunA17_Chr1g0191821 38.386 508 224 10 641 1068 50 548 7.88e-106 342
Msa0102040 MtrunA17_Chr1g0191821 40.080 499 235 12 102 547 57 544 2.70e-99 325
Msa0102040 MtrunA17_Chr1g0190421 38.554 83 51 0 352 434 104 186 1.10e-13 75.1
Msa0102040 MtrunA17_Chr7g0274421 36.145 83 53 0 352 434 113 195 2.23e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102040 AT4G33330.2 55.938 581 203 11 13 547 11 584 0.0 637
Msa0102040 AT4G33330.2 54.922 579 191 9 559 1068 11 588 0.0 632
Msa0102040 AT4G33330.4 55.938 581 203 11 13 547 22 595 0.0 637
Msa0102040 AT4G33330.4 54.608 586 196 9 559 1075 22 606 0.0 634
Msa0102040 AT4G33330.1 55.938 581 203 11 13 547 11 584 0.0 637
Msa0102040 AT4G33330.1 54.608 586 196 9 559 1075 11 595 0.0 634
Msa0102040 AT4G33330.5 58.730 504 156 10 89 547 20 516 0.0 584
Msa0102040 AT4G33330.5 56.178 518 158 8 626 1075 11 527 0.0 578
Msa0102040 AT4G33330.3 53.422 453 167 10 13 428 22 467 3.37e-149 454
Msa0102040 AT4G33330.3 49.888 447 154 9 559 936 22 467 1.23e-134 416
Msa0102040 AT3G18660.3 38.855 489 226 9 644 1068 126 605 5.40e-111 360
Msa0102040 AT3G18660.3 39.676 494 236 11 98 547 126 601 2.38e-108 352
Msa0102040 AT3G18660.1 38.855 489 226 9 644 1068 127 606 5.96e-111 360
Msa0102040 AT3G18660.1 39.676 494 236 11 98 547 127 602 2.47e-108 352
Msa0102040 AT3G18660.2 38.855 489 226 9 644 1068 131 610 1.20e-110 359
Msa0102040 AT3G18660.2 39.676 494 236 11 98 547 131 606 4.70e-108 352
Msa0102040 AT1G77130.1 38.703 478 223 10 652 1068 106 574 3.45e-110 356
Msa0102040 AT1G77130.1 38.039 510 243 11 106 573 106 584 1.34e-107 349
Msa0102040 AT1G08990.1 38.153 498 228 8 648 1073 75 564 5.75e-106 343
Msa0102040 AT1G08990.1 37.931 493 247 11 102 547 75 555 3.77e-99 325
Msa0102040 AT1G54940.1 38.767 503 216 12 648 1074 70 556 9.64e-102 332
Msa0102040 AT1G54940.1 38.340 506 244 14 102 557 70 557 6.49e-96 316
Msa0102040 AT5G18480.1 37.349 83 52 0 352 434 109 191 1.02e-13 75.9

Find 221 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATAGTTTACTCTTCT+TGG 0.139993 1_3:-8733082 None:intergenic
TTTAAATAGTTTACTCTTCT+TGG 0.139993 1_3:-8737179 None:intergenic
GCCTGTTGGGTCTTGTAATT+TGG 0.153558 1_3:+8731236 Msa0102040:CDS
AGCAAATATGGTTGTGAAAA+AGG 0.166021 1_3:+8731059 Msa0102040:CDS
CTGCTCTCGGGTTTCGGATT+CGG 0.167042 1_3:-8732633 None:intergenic
AATTGCTTTACTTATATTTC+AGG 0.178639 1_3:-8730024 None:intergenic
ATCTTAGTTCCATTCTTCTT+TGG 0.208608 1_3:-8730700 None:intergenic
GATACTTTGTCGAAATTAAT+TGG 0.214953 1_3:-8730835 None:intergenic
GATGCTTTATCGAAATTAAT+TGG 0.234271 1_3:-8735705 None:intergenic
ATCGGTAAAGAAATGAAAAT+TGG 0.238245 1_3:+8735621 Msa0102040:CDS
TGCTCTCGGGTTTCGGATTC+GGG 0.241355 1_3:-8732632 None:intergenic
TCATCTTATTGTAGCAAATA+TGG 0.245549 1_3:+8735917 Msa0102040:CDS
ATCGGTAAAGGAATGAAAAT+TGG 0.246763 1_3:+8730751 Msa0102040:CDS
GAATCCCTCTTTCATAAATT+AGG 0.247383 1_3:-8730203 None:intergenic
GTAATTTGGCTTTGCCTCTA+TGG 0.251696 1_3:+8731250 Msa0102040:CDS
CCATCTTATTGTAGCAAATA+TGG 0.252861 1_3:+8731047 Msa0102040:CDS
GTAGTTTAGCTTTGCCTATA+TGG 0.255326 1_3:+8736120 Msa0102040:CDS
CATCATCCCAGCGTTGAAAA+TGG 0.271862 1_3:-8736919 None:intergenic
TCAAACTTGTAGGGAGAAAA+AGG 0.280784 1_3:+8735495 Msa0102040:intron
TCTTTAAAGTGAAATGTTAT+AGG 0.288178 1_3:-8730276 None:intergenic
GAATCGGACCACCAAAGTTT+TGG 0.301413 1_3:-8735097 None:intergenic
CATTTGTCCTTAGACAATAT+TGG 0.306482 1_3:-8730064 None:intergenic
AAAAGAGAGTTAGAATTTCT+AGG 0.308497 1_3:-8737533 None:intergenic
TTCTTCTTCGTCGATCCATT+CGG 0.312431 1_3:-8735757 None:intergenic
TATTGGAGATTGGAACAAAA+TGG 0.312883 1_3:-8730047 None:intergenic
AACGTAGGACTGAGTTGAAT+TGG 0.320185 1_3:+8733350 Msa0102040:CDS
CCAATCTCCAATATTGTCTA+AGG 0.323950 1_3:+8730057 Msa0102040:five_prime_UTR
GACAAATGGAGCTATATAAA+TGG 0.326291 1_3:+8730079 Msa0102040:five_prime_UTR
CAGAAAGTTTCTTTGCCTAT+TGG 0.328582 1_3:+8736092 Msa0102040:CDS
TCTTCTTCGTCGATCCATTC+GGG 0.329696 1_3:-8735756 None:intergenic
CGAAACCCGAGAGCAGAAAA+TGG 0.329727 1_3:+8732640 Msa0102040:CDS
GGAAGAGTAGAGTTGTGTTT+TGG 0.333942 1_3:+8735970 Msa0102040:CDS
CGGGTTTCGGATTCGGGTGA+TGG 0.335335 1_3:-8732626 None:intergenic
TTCTTCTTCATCGATCCATT+CGG 0.342052 1_3:-8730887 None:intergenic
AGTTTACGACATGTCCAAAA+TGG 0.354426 1_3:+8732396 Msa0102040:CDS
CTGCCAATGCACGGCGTTTG+CGG 0.359937 1_3:-8732582 None:intergenic
ACGTAGGACTGAGTTAAATA+TGG 0.361785 1_3:+8737448 Msa0102040:CDS
CATGATGCCAGAGTTGAAAA+TGG 0.363410 1_3:-8732815 None:intergenic
AGAAAATTTCTTTGCCTGTT+GGG 0.364645 1_3:+8731223 Msa0102040:CDS
TGAGGTTGATGTAAAGAGAT+TGG 0.366927 1_3:+8736067 Msa0102040:CDS
TGAAGTTGATGTAAAGAAGT+TGG 0.369288 1_3:+8731197 Msa0102040:CDS
TAGTGAATGGCATATAGTTT+TGG 0.373528 1_3:-8733169 None:intergenic
TAGCTTAAGTAGCAAGGATT+AGG 0.374369 1_3:-8730154 None:intergenic
GAATCTCATAATCAAAGCTT+TGG 0.374742 1_3:-8730341 None:intergenic
ATAGAGACTATGATTGCAAT+TGG 0.376794 1_3:+8737315 Msa0102040:CDS
TCTTCTTCATCGATCCATTC+GGG 0.376872 1_3:-8730886 None:intergenic
TCTTCTCCGTCCTTCTTCTT+CGG 0.382394 1_3:+8730408 Msa0102040:CDS
TGGGATCACTTGATTATCAT+TGG 0.383578 1_3:+8733395 Msa0102040:CDS
TGGGATCACTTGATTATCAT+TGG 0.383578 1_3:+8737492 Msa0102040:CDS
CGCAAACGCCGTGCATTGGC+AGG 0.384275 1_3:+8732583 Msa0102040:CDS
TCTTCTCCGTCTGCCTTCTT+CGG 0.384334 1_3:+8735164 Msa0102040:CDS
GGAAGAGTAAGGTTGTGTTT+TGG 0.395531 1_3:+8731100 Msa0102040:CDS
AAACTACCTGAAGGTACAAT+TGG 0.395841 1_3:-8732851 None:intergenic
TTACCTGAAGGTGCAATTAG+AGG 0.399863 1_3:-8736952 None:intergenic
TAGTGAATAGCATATAGTTT+TGG 0.401182 1_3:-8737266 None:intergenic
GCAAATATGGTTGTGAAGAA+AGG 0.401191 1_3:+8735930 Msa0102040:CDS
TAATTTGGCTTTGCCTCTAT+GGG 0.402490 1_3:+8731251 Msa0102040:CDS
GTGGTGGATCAAAGGGTTTA+TGG 0.408016 1_3:+8733244 Msa0102040:CDS
ATAACATTTCACTTTAAAGA+TGG 0.409027 1_3:+8730279 Msa0102040:exon
CCTTAGACAATATTGGAGAT+TGG 0.411101 1_3:-8730057 None:intergenic
ATAGAGACTATGACTGCAAT+TGG 0.413410 1_3:+8733218 Msa0102040:intron
GATAGTGCAGCCTCACTTGT+TGG 0.413451 1_3:+8735195 Msa0102040:CDS
TAGTTTAGCTTTGCCTATAT+GGG 0.415460 1_3:+8736121 Msa0102040:CDS
AGCCCTCTAATTGCACCTTC+AGG 0.419426 1_3:+8736949 Msa0102040:CDS
TGTTTCAAATCTTCATAAGT+TGG 0.423984 1_3:+8730303 Msa0102040:CDS
CAGAAAATTTCTTTGCCTGT+TGG 0.425692 1_3:+8731222 Msa0102040:CDS
AGCCTTCCAATTGTACCTTC+AGG 0.428889 1_3:+8732845 Msa0102040:CDS
AGGGGAAGAATGATTGGAAA+TGG 0.435577 1_3:+8731079 Msa0102040:CDS
ACTACCTTGGTTTGAAACCT+TGG 0.436528 1_3:+8737285 Msa0102040:CDS
AAGAAGGCAGACGGAGAAGA+AGG 0.440509 1_3:-8735161 None:intergenic
ATTCCTCAGCACAAAGATAT+CGG 0.443301 1_3:-8736844 None:intergenic
AAGAAGAAGGACGGAGAAGA+AGG 0.443972 1_3:-8730405 None:intergenic
CAATATTGTCTAAGGACAAA+TGG 0.446228 1_3:+8730065 Msa0102040:five_prime_UTR
CGCCGTGCATTGGCAGGTGC+CGG 0.453053 1_3:+8732589 Msa0102040:CDS
TATGTTGCAAATTCTGGCAT+TGG 0.454598 1_3:-8730940 None:intergenic
AAATTCTGGCATTGGTAACT+CGG 0.455255 1_3:-8730932 None:intergenic
GAGAAGTATAAGGTCACGTT+TGG 0.457875 1_3:-8736643 None:intergenic
GTGGAAATTTCATGATAGAA+TGG 0.458602 1_3:+8737388 Msa0102040:CDS
GAATTCTGGCATTGGTAACT+CGG 0.459806 1_3:-8735802 None:intergenic
TCATACAATGGAGGTGATCA+AGG 0.461190 1_3:+8733022 Msa0102040:CDS
CTATATGCTATTCACTACCT+TGG 0.461805 1_3:+8737272 Msa0102040:CDS
AAGGAGAAGATCTTATAAGA+TGG 0.462241 1_3:+8733375 Msa0102040:CDS
ACTTGCTTCTACTGTTGTGT+TGG 0.466267 1_3:-8733116 None:intergenic
AACATACCTTGTTCCCATAT+AGG 0.468501 1_3:-8736134 None:intergenic
CCGCCAAGGCATGACGTTTG+CGG 0.468698 1_3:-8736686 None:intergenic
ACTTGCTTCTACTGTTGTGT+TGG 0.470999 1_3:-8737213 None:intergenic
GCTAAACTACACGAACCAAT+AGG 0.472120 1_3:-8736107 None:intergenic
CTATATGCCATTCACTACCT+TGG 0.473091 1_3:+8733175 Msa0102040:CDS
AATAACAGTGCCTAAAATGA+AGG 0.473124 1_3:-8730250 None:intergenic
TGCATAAACAATCAGAAAGA+TGG 0.476229 1_3:-8730380 None:intergenic
TGGTTAAACATGAAGGTGAT+TGG 0.476507 1_3:+8736036 Msa0102040:CDS
TGTTTCAAATGTTAATAAGT+TGG 0.479446 1_3:+8735059 Msa0102040:CDS
AATCAGTAAGTTGCCACAAC+CGG 0.480734 1_3:-8732693 None:intergenic
TCTTCAGAAAGCTACGTTTG+TGG 0.481836 1_3:+8732478 Msa0102040:CDS
TCATGGAGGCCAAAGACAAA+TGG 0.482348 1_3:+8735561 Msa0102040:CDS
CATGAATCCTTGGTCACCTC+CGG 0.483263 1_3:-8737126 None:intergenic
CACATCCTAATTTATGAAAG+AGG 0.484989 1_3:+8730198 Msa0102040:five_prime_UTR
CGTCCGCAAACGCCGTGCAT+TGG 0.485600 1_3:+8732579 Msa0102040:CDS
TTCCCAGTGGCAGACATTTG+AGG 0.486184 1_3:-8732784 None:intergenic
AGCTGTCAATGAGAAGTATA+AGG 0.486876 1_3:-8736653 None:intergenic
TTGGGATGTGGTGGATCAAA+GGG 0.488629 1_3:+8733237 Msa0102040:CDS
TCGAAATAGACCGAAGAAGA+AGG 0.488721 1_3:-8730418 None:intergenic
TTTCCTCAAATGTCTGCCAC+TGG 0.488899 1_3:+8732781 Msa0102040:CDS
TCAAGGAATCCAAAGAAGAA+TGG 0.492637 1_3:+8730691 Msa0102040:CDS
AGATCTCGTTCATGAATCCT+TGG 0.496911 1_3:-8737136 None:intergenic
CAAATATGGTTGTGAAGAAA+GGG 0.496943 1_3:+8735931 Msa0102040:CDS
CGGAGAAGATCTAGTAAGAT+GGG 0.497495 1_3:+8737473 Msa0102040:CDS
GCCAAATTACAAGACCCAAC+AGG 0.501987 1_3:-8731237 None:intergenic
ACGGAGAAGATCTAGTAAGA+TGG 0.502068 1_3:+8737472 Msa0102040:CDS
GATGGTTCGAATCTGCCAAC+CGG 0.507919 1_3:-8732608 None:intergenic
TTTCCTCAAATGTCTGCTAC+TGG 0.509517 1_3:+8736885 Msa0102040:CDS
ATTATAGTAAGTTCCGGTTG+TGG 0.510136 1_3:+8732680 Msa0102040:intron
GAGAGCACCATCCAAAACTT+TGG 0.511607 1_3:+8735086 Msa0102040:CDS
ACGTAGGACTGAGTTGAATT+GGG 0.513319 1_3:+8733351 Msa0102040:CDS
CAAAACAGAACAAATTGAAT+CGG 0.513629 1_3:-8735113 None:intergenic
CGTCCGCAAACGTCATGCCT+TGG 0.514633 1_3:+8736683 Msa0102040:CDS
GTGCATTGGCAGGTGCCGGT+TGG 0.516239 1_3:+8732593 Msa0102040:CDS
TAGAGACTATGACTGCAATT+GGG 0.518966 1_3:+8733219 Msa0102040:intron
GAGTAAATGTAGACCAATGT+TGG 0.519399 1_3:+8731122 Msa0102040:CDS
GAGTAAGTGTAGACCAATGT+TGG 0.521320 1_3:+8735992 Msa0102040:CDS
TTACCAGTAGCAGACATTTG+AGG 0.522222 1_3:-8736888 None:intergenic
CCATATTTGCTACAATAAGA+TGG 0.523620 1_3:-8731047 None:intergenic
TGCATAAACAATCAGAAAGA+TGG 0.524099 1_3:-8735136 None:intergenic
ACATCCTAATTTATGAAAGA+GGG 0.526934 1_3:+8730199 Msa0102040:five_prime_UTR
AATTACCAAAAGCAAAATCA+AGG 0.531008 1_3:+8730674 Msa0102040:CDS
CTATCAAAATAGACCGAAGA+AGG 0.532085 1_3:-8735177 None:intergenic
TTGGGATGTAGTGGATCAAA+GGG 0.532969 1_3:+8737334 Msa0102040:CDS
AACCGGCACCTGCCAATGCA+CGG 0.534207 1_3:-8732591 None:intergenic
ATGATACAATGTCGTGGCGC+AGG 0.535881 1_3:-8737100 None:intergenic
AGATCTTTGTATGGTGGCAT+AGG 0.536864 1_3:+8737153 Msa0102040:CDS
AGGAGAAGATCTTATAAGAT+GGG 0.537025 1_3:+8733376 Msa0102040:CDS
TCATGAACGAGATCTTTGTA+TGG 0.537659 1_3:+8737144 Msa0102040:CDS
CGTCATGCCTTGGCGGACGC+AGG 0.542261 1_3:+8736693 Msa0102040:CDS
TAGAGACTATGATTGCAATT+GGG 0.542540 1_3:+8737316 Msa0102040:CDS
CCGCAAACGTCATGCCTTGG+CGG 0.543394 1_3:+8736686 Msa0102040:CDS
ATGATACAATGTCGTGGCGC+CGG 0.546091 1_3:-8733003 None:intergenic
TACATACCTTGTTCCCATAG+AGG 0.546595 1_3:-8731264 None:intergenic
GGACAGATTTATTTCCCGAA+TGG 0.547391 1_3:+8730872 Msa0102040:CDS
GGACAGATTTATTTCCCGAA+TGG 0.547391 1_3:+8735742 Msa0102040:CDS
TGTGTTAGTAGTTAAATATG+AGG 0.548577 1_3:-8730179 None:intergenic
TTTCAAACCAAGGTAGTGAA+TGG 0.549113 1_3:-8733182 None:intergenic
CAATGCACGGCGTTTGCGGA+CGG 0.551035 1_3:-8732578 None:intergenic
ATGACGTTTGCGGACGGAGA+TGG 0.554231 1_3:-8736676 None:intergenic
CTCATAATCAAAGCTTTGGA+TGG 0.554858 1_3:-8730337 None:intergenic
GAAAATTGGAACGGTGAACA+TGG 0.554949 1_3:+8730765 Msa0102040:CDS
ACGTGGCGCACCAACGTTGG+TGG 0.556176 1_3:+8733272 Msa0102040:CDS
TTCCTCAAATGTCTGCCACT+GGG 0.556230 1_3:+8732782 Msa0102040:CDS
TAAAGAAATGAAAATTGGAA+TGG 0.560071 1_3:+8735626 Msa0102040:CDS
TATGTTGTGAATTCTGGCAT+TGG 0.561815 1_3:-8735810 None:intergenic
ACGGCGTTTGCGGACGGAGA+TGG 0.562657 1_3:-8732572 None:intergenic
TCTTCAGAAAGATACGTTTG+TGG 0.563011 1_3:+8736582 Msa0102040:CDS
TACCTGAAGGTGCAATTAGA+GGG 0.566381 1_3:-8736951 None:intergenic
ATTGGGATGTGGTGGATCAA+AGG 0.566589 1_3:+8733236 Msa0102040:CDS
AAGACGACGACATAAGTGAA+TGG 0.569835 1_3:+8735661 Msa0102040:CDS
ATTGGGATGTAGTGGATCAA+AGG 0.569835 1_3:+8737333 Msa0102040:CDS
GCTTTGCCTCTATGGGAACA+AGG 0.576091 1_3:+8731258 Msa0102040:CDS
AATGTAGTGTGCTTATGAGC+CGG 0.577527 1_3:+8732984 Msa0102040:intron
ATAACAGTGCCTAAAATGAA+GGG 0.577946 1_3:-8730249 None:intergenic
CTATGACTGCAATTGGGATG+TGG 0.583176 1_3:+8733225 Msa0102040:CDS
AGGCTCACCTTACCTTGTGA+TGG 0.586063 1_3:-8730480 None:intergenic
CGTAGCTTTCTGAAGAGTGT+AGG 0.589313 1_3:-8732471 None:intergenic
CGTATCTTTCTGAAGAGTGT+AGG 0.589313 1_3:-8736575 None:intergenic
TACCTGAAGGTACAATTGGA+AGG 0.593491 1_3:-8732847 None:intergenic
CTTCCAACCTGCGTCCGCCA+AGG 0.594413 1_3:-8736700 None:intergenic
AGAAGAAGGACGGAGAAGAA+GGG 0.596920 1_3:-8730404 None:intergenic
AAGACGATGATGTAAGCGAA+TGG 0.598071 1_3:+8730791 Msa0102040:CDS
CAAGGCATGACGTTTGCGGA+CGG 0.600005 1_3:-8736682 None:intergenic
GCTTTGCCTATATGGGAACA+AGG 0.600956 1_3:+8736128 Msa0102040:CDS
AATTCTGGCATTGGTAACTC+GGG 0.601092 1_3:-8730931 None:intergenic
AATTCTGGCATTGGTAACTC+GGG 0.601092 1_3:-8735801 None:intergenic
ATTGGTAACTCGGGACATGT+TGG 0.601217 1_3:-8730922 None:intergenic
ATTGGTAACTCGGGACATGT+TGG 0.601217 1_3:-8735792 None:intergenic
AGAGTGTAGGACTGTTGCAT+AGG 0.602334 1_3:-8732458 None:intergenic
AGAGTGTAGGACTGTTGCAT+AGG 0.602334 1_3:-8736562 None:intergenic
AGCACCATCCAAAACTTTGG+TGG 0.603780 1_3:+8735089 Msa0102040:CDS
TGATTGCAATTGGGATGTAG+TGG 0.604309 1_3:+8737325 Msa0102040:CDS
AGGCTCGCTTTACCTTGTGA+TGG 0.604663 1_3:-8735236 None:intergenic
GATGATTTGGTTAAACATGA+AGG 0.605109 1_3:+8736029 Msa0102040:CDS
AGAAGGCAGACGGAGAAGAA+GGG 0.606306 1_3:-8735160 None:intergenic
TGAACGAGATCTTTGTATGG+TGG 0.608114 1_3:+8737147 Msa0102040:CDS
GGACTGAGTTGAATTGGGAA+AGG 0.613486 1_3:+8733356 Msa0102040:CDS
TGATTGGAAATGGAAGAGTA+AGG 0.613848 1_3:+8731089 Msa0102040:CDS
ATTTGCAACATATGAAAACA+TGG 0.614599 1_3:+8730951 Msa0102040:CDS
GTGACGTGGCGCACCAACGT+TGG 0.615676 1_3:+8733269 Msa0102040:CDS
GAGGATTAGCTTAAGTAGCA+AGG 0.615905 1_3:-8730160 None:intergenic
ATGTGGCACACCAACGTTGG+TGG 0.618509 1_3:+8737369 Msa0102040:CDS
TTAAACATGAAGGTGATTGG+TGG 0.621017 1_3:+8736039 Msa0102040:CDS
ATAAGTGAATGGAACATACA+TGG 0.621602 1_3:+8735672 Msa0102040:CDS
GTAAGCGAATGGAACATACA+TGG 0.622116 1_3:+8730802 Msa0102040:CDS
TCATACACCGGAGGTGACCA+AGG 0.624983 1_3:+8737119 Msa0102040:CDS
TAAATGAGATATTTGTGTGG+TGG 0.628179 1_3:+8733050 Msa0102040:CDS
CGGTGTATGATACAATGTCG+TGG 0.628381 1_3:-8737106 None:intergenic
TAAAGGAATGAAAATTGGAA+CGG 0.629065 1_3:+8730756 Msa0102040:CDS
ATTCTGATATTCTTGTGCTG+AGG 0.637140 1_3:+8732737 Msa0102040:CDS
TAACAGTGCCTAAAATGAAG+GGG 0.637170 1_3:-8730248 None:intergenic
TTCTAAATGAGATATTTGTG+TGG 0.639460 1_3:+8733047 Msa0102040:CDS
ATTCACAACATATGAAAACA+TGG 0.640097 1_3:+8735821 Msa0102040:CDS
CAAAGAGCATCCAACAAGTG+AGG 0.640528 1_3:-8735205 None:intergenic
ACTCCGATATCTTTGTGCTG+AGG 0.640952 1_3:+8736841 Msa0102040:CDS
AATAGACCGAAGAAGGCAGA+CGG 0.645935 1_3:-8735170 None:intergenic
AATGCCAAGGTTTCAAACCA+AGG 0.646436 1_3:-8737289 None:intergenic
CATGAAATTTCCACCAACGT+TGG 0.647370 1_3:-8737379 None:intergenic
CATACAATGGAGGTGATCAA+GGG 0.650143 1_3:+8733023 Msa0102040:CDS
TAGTCTCTATAGCAATGCCA+AGG 0.650829 1_3:-8737302 None:intergenic
TGACTGCAATTGGGATGTGG+TGG 0.653637 1_3:+8733228 Msa0102040:CDS
GGACTGAGTTAAATATGGAA+CGG 0.654452 1_3:+8737453 Msa0102040:CDS
AAGGGTTTATGCTAGTGATG+TGG 0.656120 1_3:+8737352 Msa0102040:CDS
CATGAAAATTCCACCAACGT+TGG 0.657745 1_3:-8733282 None:intergenic
CACGACATTGTATCATACAA+TGG 0.658397 1_3:+8733010 Msa0102040:CDS
GTAGGTTGACAAAAGAACGT+AGG 0.659262 1_3:+8737432 Msa0102040:CDS
CACGACATTGTATCATACAC+CGG 0.662216 1_3:+8737107 Msa0102040:CDS
ATTGAGAGAATGCCATCACA+AGG 0.668519 1_3:+8730468 Msa0102040:CDS
AATAGACCGAAGAAGAAGGA+CGG 0.670251 1_3:-8730414 None:intergenic
CATTGTATGATACAATGTCG+TGG 0.678013 1_3:-8733009 None:intergenic
TTTGAGAGAATGCCATCACA+AGG 0.679517 1_3:+8735224 Msa0102040:CDS
GTAGGTTGACAAGACAACGT+AGG 0.684481 1_3:+8733335 Msa0102040:CDS
GACATTGTATCATACAATGG+AGG 0.686734 1_3:+8733013 Msa0102040:CDS
GTGATGTGGCACACCAACGT+TGG 0.727972 1_3:+8737366 Msa0102040:CDS
GACATTGTATCATACACCGG+AGG 0.730549 1_3:+8737110 Msa0102040:CDS
AAGGGTTTATGGTAGTGACG+TGG 0.732254 1_3:+8733255 Msa0102040:CDS
AATGGACTGATCATTCCCAG+TGG 0.776213 1_3:-8732797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACAATTACTATTATATAA+TGG + chr1_3:8731663-8731682 Msa0102040:intron 10.0%
!! AACAATTACTATTATATAAT+GGG + chr1_3:8731664-8731683 Msa0102040:intron 10.0%
!! TTTACAAAATATATATAAGA+AGG + chr1_3:8732928-8732947 Msa0102040:intron 10.0%
!!! TAAACTATTTAAAGAATTTT+TGG + chr1_3:8733092-8733111 Msa0102040:CDS 10.0%
!!! AAACTATTTAAAGAATTTTT+GGG + chr1_3:8733093-8733112 Msa0102040:CDS 10.0%
!! AAGAAAAAAAAATTACATAA+AGG - chr1_3:8733498-8733517 None:intergenic 10.0%
!!! TAAACTATTTAAAGAATTTT+TGG + chr1_3:8733092-8733111 Msa0102040:CDS 10.0%
!!! ATTTTTCATTTAGAAATTGT+AGG + chr1_3:8729987-8730006 Msa0102040:five_prime_UTR 15.0%
!! ACAATTACTATTATATAATG+GGG + chr1_3:8731665-8731684 Msa0102040:intron 15.0%
!!! AATTAATCTTTTCTTTATTG+TGG + chr1_3:8731736-8731755 Msa0102040:intron 15.0%
!!! ACTAATAGCATTTTTTTAAA+AGG + chr1_3:8731806-8731825 Msa0102040:intron 15.0%
!! ATTACATAAAGGAAAAAAAA+AGG - chr1_3:8733487-8733506 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_3:8734067-8734086 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_3:8734066-8734085 Msa0102040:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_3:8734090-8734109 Msa0102040:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr1_3:8734193-8734212 Msa0102040:intron 15.0%
!!! TAGTTAGTTTTCTATTTTTA+CGG - chr1_3:8734368-8734387 None:intergenic 15.0%
!! TTGTAAAATTCAATTTACTT+TGG - chr1_3:8734449-8734468 None:intergenic 15.0%
!! AACTATGGAAAAAAAAAATA+TGG - chr1_3:8734588-8734607 None:intergenic 15.0%
!! ATATTATAGACTAAATTGAT+CGG - chr1_3:8735283-8735302 None:intergenic 15.0%
!! AATTTCAAAGACTATATTAT+CGG + chr1_3:8735367-8735386 Msa0102040:intron 15.0%
!! ATTAATTAAAAATTACCTGA+AGG - chr1_3:8736967-8736986 None:intergenic 15.0%
!! AATTGCTTTACTTATATTTC+AGG - chr1_3:8730027-8730046 None:intergenic 20.0%
!!! TCTTTAAAGTGAAATGTTAT+AGG - chr1_3:8730279-8730298 None:intergenic 20.0%
!!! ATAACATTTCACTTTAAAGA+TGG + chr1_3:8730279-8730298 Msa0102040:exon 20.0%
!! AAAAGATTTATTTCCATGTT+TGG - chr1_3:8730591-8730610 None:intergenic 20.0%
!! AGAAAAGATTAATTAAGAAC+TGG - chr1_3:8731730-8731749 None:intergenic 20.0%
!! TTCTTAGAAAACAAGAATTT+GGG - chr1_3:8731993-8732012 None:intergenic 20.0%
!! TTTCTTAGAAAACAAGAATT+TGG - chr1_3:8731994-8732013 None:intergenic 20.0%
!! AGTATAATTATAGTAAGTTC+CGG + chr1_3:8732674-8732693 Msa0102040:intron 20.0%
!! TTTAAATAGTTTACTCTTCT+TGG - chr1_3:8733085-8733104 None:intergenic 20.0%
!! AATATCATGTTAGACAAAAT+CGG - chr1_3:8733950-8733969 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_3:8734076-8734095 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1_3:8734153-8734172 Msa0102040:intron 20.0%
!! TTGTCACTAAATATAAACTA+TGG - chr1_3:8734603-8734622 None:intergenic 20.0%
!! AATGAGTGTATAAAATTTAG+GGG - chr1_3:8734662-8734681 None:intergenic 20.0%
!! GAATGAGTGTATAAAATTTA+GGG - chr1_3:8734663-8734682 None:intergenic 20.0%
!! AGAATGAGTGTATAAAATTT+AGG - chr1_3:8734664-8734683 None:intergenic 20.0%
!! ATTTCTAAATCCAAAATGTT+TGG - chr1_3:8734736-8734755 None:intergenic 20.0%
!! TGTTTCAAATGTTAATAAGT+TGG + chr1_3:8735059-8735078 Msa0102040:CDS 20.0%
!! CAAGAAAAAATGTACAAAAT+CGG - chr1_3:8735420-8735439 None:intergenic 20.0%
!! ATATACAAGATACATTTCTA+TGG - chr1_3:8735464-8735483 None:intergenic 20.0%
!! AATTACCAAATCAAAAATCA+TGG + chr1_3:8735544-8735563 Msa0102040:CDS 20.0%
!! TAAAGAAATGAAAATTGGAA+TGG + chr1_3:8735626-8735645 Msa0102040:CDS 20.0%
!! GGTATAATTATACTTATTGT+AGG - chr1_3:8736772-8736791 None:intergenic 20.0%
!! TTTAAATAGTTTACTCTTCT+TGG - chr1_3:8733085-8733104 None:intergenic 20.0%
! TGTGTTAGTAGTTAAATATG+AGG - chr1_3:8730182-8730201 None:intergenic 25.0%
! ACATCCTAATTTATGAAAGA+GGG + chr1_3:8730199-8730218 Msa0102040:five_prime_UTR 25.0%
! TGTTTCAAATCTTCATAAGT+TGG + chr1_3:8730303-8730322 Msa0102040:CDS 25.0%
!!! ATTTTAATGTGTACCAAACA+TGG + chr1_3:8730575-8730594 Msa0102040:intron 25.0%
! AATTACCAAAAGCAAAATCA+AGG + chr1_3:8730674-8730693 Msa0102040:CDS 25.0%
! TAAAGGAATGAAAATTGGAA+CGG + chr1_3:8730756-8730775 Msa0102040:CDS 25.0%
! GATACTTTGTCGAAATTAAT+TGG - chr1_3:8730838-8730857 None:intergenic 25.0%
!!! AAGTATCACAATTTTTCAAC+TGG + chr1_3:8730851-8730870 Msa0102040:CDS 25.0%
!! TTTTCATATGTTGCAAATTC+TGG - chr1_3:8730949-8730968 None:intergenic 25.0%
! ATTTGCAACATATGAAAACA+TGG + chr1_3:8730951-8730970 Msa0102040:CDS 25.0%
!!! GATTTTTAGATGTGATGATT+TGG + chr1_3:8731146-8731165 Msa0102040:CDS 25.0%
!!! GATGATTTGGTTAAAAATGA+AGG + chr1_3:8731159-8731178 Msa0102040:CDS 25.0%
!! TAATCTTTTCTTTATTGTGG+AGG + chr1_3:8731739-8731758 Msa0102040:intron 25.0%
! CATAACAAGTCAATATATAG+TGG - chr1_3:8731887-8731906 None:intergenic 25.0%
!!! TTGTTTTGTCAGCATTAATT+TGG + chr1_3:8731918-8731937 Msa0102040:intron 25.0%
!! ACTTGTTAATTACTTACAAG+AGG - chr1_3:8732090-8732109 None:intergenic 25.0%
!!! AAAAATAGTGTTGATTTTGC+AGG + chr1_3:8732364-8732383 Msa0102040:intron 25.0%
!!! AAAATAGTGTTGATTTTGCA+GGG + chr1_3:8732365-8732384 Msa0102040:intron 25.0%
! GTAAATTAAAAACTACCTGA+AGG - chr1_3:8732863-8732882 None:intergenic 25.0%
! TTCTAAATGAGATATTTGTG+TGG + chr1_3:8733047-8733066 Msa0102040:CDS 25.0%
!! AGAAGTTACAAAGTTTTTGT+AGG + chr1_3:8733317-8733336 Msa0102040:CDS 25.0%
! TACAAGATATATGGAGATTA+AGG - chr1_3:8733546-8733565 None:intergenic 25.0%
! ATGAATATGTCTATACCATA+CGG - chr1_3:8733573-8733592 None:intergenic 25.0%
!! TAGCTCGTATTACATATTTT+TGG - chr1_3:8733757-8733776 None:intergenic 25.0%
!!! CAAAGTTGGTAAAATTTAGT+GGG - chr1_3:8733798-8733817 None:intergenic 25.0%
!!! TCAAAGTTGGTAAAATTTAG+TGG - chr1_3:8733799-8733818 None:intergenic 25.0%
! ACTGAAGTATAAAAAAGTCA+TGG - chr1_3:8733827-8733846 None:intergenic 25.0%
!!! ATGACTTTTTTATACTTCAG+TGG + chr1_3:8733826-8733845 Msa0102040:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr1_3:8734033-8734052 Msa0102040:intron 25.0%
! TACCTTATCTTCTCTATATA+TGG + chr1_3:8734685-8734704 Msa0102040:intron 25.0%
! AATTGCCTTACTTATATTTC+AGG - chr1_3:8734785-8734804 None:intergenic 25.0%
! AATAGACAATATTGGACTTA+AGG - chr1_3:8734818-8734837 None:intergenic 25.0%
!! CCTTGTTTAATAGACAATAT+TGG - chr1_3:8734826-8734845 None:intergenic 25.0%
! CCAATATTGTCTATTAAACA+AGG + chr1_3:8734823-8734842 Msa0102040:intron 25.0%
! ATTGTCTATTAAACAAGGAA+AGG + chr1_3:8734828-8734847 Msa0102040:intron 25.0%
! ATTAAACAAGGAAAGGAAAA+TGG + chr1_3:8734835-8734854 Msa0102040:intron 25.0%
! TTTCTAATCTTTGCTACTAA+AGG + chr1_3:8734911-8734930 Msa0102040:intron 25.0%
! CAAAACAGAACAAATTGAAT+CGG - chr1_3:8735116-8735135 None:intergenic 25.0%
! CTAGAAAATTTAAGCGATAT+AGG - chr1_3:8735259-8735278 None:intergenic 25.0%
!! CTATATCGCTTAAATTTTCT+AGG + chr1_3:8735257-8735276 Msa0102040:intron 25.0%
!! AAAAGGCATAAAAATGAAAG+CGG + chr1_3:8735512-8735531 Msa0102040:CDS 25.0%
!!! ATTTTAGTTCCATTTGTCTT+TGG - chr1_3:8735573-8735592 None:intergenic 25.0%
!!! ATAGAAGTACCAAGTTTTTT+AGG + chr1_3:8735591-8735610 Msa0102040:intron 25.0%
! ATTATTTCGCCTAAAAAACT+TGG - chr1_3:8735603-8735622 None:intergenic 25.0%
!!! AGTTTTTTAGGCGAAATAAT+CGG + chr1_3:8735603-8735622 Msa0102040:intron 25.0%
! ATCGGTAAAGAAATGAAAAT+TGG + chr1_3:8735621-8735640 Msa0102040:CDS 25.0%
! GATGCTTTATCGAAATTAAT+TGG - chr1_3:8735708-8735727 None:intergenic 25.0%
!! TTTTCATATGTTGTGAATTC+TGG - chr1_3:8735819-8735838 None:intergenic 25.0%
! ATTCACAACATATGAAAACA+TGG + chr1_3:8735821-8735840 Msa0102040:CDS 25.0%
! TCATCTTATTGTAGCAAATA+TGG + chr1_3:8735917-8735936 Msa0102040:CDS 25.0%
!!! GATTTTTAGATGTGATGATT+TGG + chr1_3:8731146-8731165 Msa0102040:CDS 25.0%
!!! AAAATAGTGTTGATTTTTGC+AGG + chr1_3:8736486-8736505 Msa0102040:intron 25.0%
!!! AAATAGTGTTGATTTTTGCA+GGG + chr1_3:8736487-8736506 Msa0102040:intron 25.0%
! AATCAAGTAATCCATTTATG+AGG + chr1_3:8736984-8737003 Msa0102040:intron 25.0%
!!! AGTGTGAAAAATGGATTATT+TGG + chr1_3:8737233-8737252 Msa0102040:CDS 25.0%
!! TAGTGAATAGCATATAGTTT+TGG - chr1_3:8737269-8737288 None:intergenic 25.0%
!! AGAAGTTACAAAGTTTTTGT+AGG + chr1_3:8733317-8733336 Msa0102040:CDS 25.0%
! AAAAGAGAGTTAGAATTTCT+AGG - chr1_3:8737536-8737555 None:intergenic 25.0%
!! AAATTCTAACTCTCTTTTGA+TGG + chr1_3:8737538-8737557 Msa0102040:CDS 25.0%
TATTGGAGATTGGAACAAAA+TGG - chr1_3:8730050-8730069 None:intergenic 30.0%
CATTTGTCCTTAGACAATAT+TGG - chr1_3:8730067-8730086 None:intergenic 30.0%
CAATATTGTCTAAGGACAAA+TGG + chr1_3:8730065-8730084 Msa0102040:five_prime_UTR 30.0%
GACAAATGGAGCTATATAAA+TGG + chr1_3:8730079-8730098 Msa0102040:five_prime_UTR 30.0%
CACATCCTAATTTATGAAAG+AGG + chr1_3:8730198-8730217 Msa0102040:five_prime_UTR 30.0%
GAATCCCTCTTTCATAAATT+AGG - chr1_3:8730206-8730225 None:intergenic 30.0%
ATAACAGTGCCTAAAATGAA+GGG - chr1_3:8730252-8730271 None:intergenic 30.0%
AATAACAGTGCCTAAAATGA+AGG - chr1_3:8730253-8730272 None:intergenic 30.0%
GAATCTCATAATCAAAGCTT+TGG - chr1_3:8730344-8730363 None:intergenic 30.0%
TGCATAAACAATCAGAAAGA+TGG - chr1_3:8730383-8730402 None:intergenic 30.0%
AGAAGAAGATGAGAAAGAAA+GGG - chr1_3:8730524-8730543 None:intergenic 30.0%
TTGTGTGATCTTCAACTTAT+AGG + chr1_3:8730615-8730634 Msa0102040:intron 30.0%
TGTGTGATCTTCAACTTATA+GGG + chr1_3:8730616-8730635 Msa0102040:intron 30.0%
AAAAATCAAAGCAGTGTTAG+AGG + chr1_3:8730651-8730670 Msa0102040:CDS 30.0%
ATCTTAGTTCCATTCTTCTT+TGG - chr1_3:8730703-8730722 None:intergenic 30.0%
!!! ATAGAAGTACCAAGTTTTCT+AGG + chr1_3:8730721-8730740 Msa0102040:intron 30.0%
!!! ATTTTTTCGCCTAGAAAACT+TGG - chr1_3:8730733-8730752 None:intergenic 30.0%
! AGTTTTCTAGGCGAAAAAAT+CGG + chr1_3:8730733-8730752 Msa0102040:intron 30.0%
ATCGGTAAAGGAATGAAAAT+TGG + chr1_3:8730751-8730770 Msa0102040:CDS 30.0%
! CCATATTTGCTACAATAAGA+TGG - chr1_3:8731050-8731069 None:intergenic 30.0%
CCATCTTATTGTAGCAAATA+TGG + chr1_3:8731047-8731066 Msa0102040:CDS 30.0%
AGCAAATATGGTTGTGAAAA+AGG + chr1_3:8731059-8731078 Msa0102040:CDS 30.0%
GCAAATATGGTTGTGAAAAA+GGG + chr1_3:8731060-8731079 Msa0102040:CDS 30.0%
CAAATATGGTTGTGAAAAAG+GGG + chr1_3:8731061-8731080 Msa0102040:CDS 30.0%
CATCTAAAAATCTCCAACAT+TGG - chr1_3:8731138-8731157 None:intergenic 30.0%
TGGTTAAAAATGAAGGTGAT+TGG + chr1_3:8731166-8731185 Msa0102040:CDS 30.0%
TTAAAAATGAAGGTGATTGG+TGG + chr1_3:8731169-8731188 Msa0102040:CDS 30.0%
!! TGAAGTTGATGTAAAGAAGT+TGG + chr1_3:8731197-8731216 Msa0102040:CDS 30.0%
AGAAAATTTCTTTGCCTGTT+GGG + chr1_3:8731223-8731242 Msa0102040:CDS 30.0%
! CACACAATTTTGCATTAAAG+TGG + chr1_3:8731293-8731312 Msa0102040:intron 30.0%
AGATTAATTAAGAACTGGTC+TGG - chr1_3:8731725-8731744 None:intergenic 30.0%
ATGCATGCAAAATAATGTAG+TGG - chr1_3:8731852-8731871 None:intergenic 30.0%
! CAATATATAGTGGTTGGTTA+GGG - chr1_3:8731877-8731896 None:intergenic 30.0%
! TCAATATATAGTGGTTGGTT+AGG - chr1_3:8731878-8731897 None:intergenic 30.0%
ACAAGTCAATATATAGTGGT+TGG - chr1_3:8731883-8731902 None:intergenic 30.0%
TTAATACTAGTCCAATATCC+TGG + chr1_3:8731963-8731982 Msa0102040:intron 30.0%
TAGTATCAATACAGTGAAGA+CGG - chr1_3:8732235-8732254 None:intergenic 30.0%
!! TCTTACGTTTTGTTCCATTT+TGG - chr1_3:8732413-8732432 None:intergenic 30.0%
TAAATGAGATATTTGTGTGG+TGG + chr1_3:8733050-8733069 Msa0102040:CDS 30.0%
! TAGTGAATGGCATATAGTTT+TGG - chr1_3:8733172-8733191 None:intergenic 30.0%
! GTGGAATTTTCATGATAGAA+TGG + chr1_3:8733291-8733310 Msa0102040:CDS 30.0%
AAGGAGAAGATCTTATAAGA+TGG + chr1_3:8733375-8733394 Msa0102040:CDS 30.0%
AGGAGAAGATCTTATAAGAT+GGG + chr1_3:8733376-8733395 Msa0102040:CDS 30.0%
! AAAAGAGATCCAGATTTTCT+AGG - chr1_3:8733439-8733458 None:intergenic 30.0%
! AAAATCTGGATCTCTTTTGA+TGG + chr1_3:8733441-8733460 Msa0102040:intron 30.0%
!! TTTTTATACTTCAGTGGACT+CGG + chr1_3:8733832-8733851 Msa0102040:intron 30.0%
GTTAGACAAAATCGGAAAAT+AGG - chr1_3:8733942-8733961 None:intergenic 30.0%
ACTGATAATACAACTAAGCA+GGG - chr1_3:8734271-8734290 None:intergenic 30.0%
AACTGATAATACAACTAAGC+AGG - chr1_3:8734272-8734291 None:intergenic 30.0%
!! ATGCATTTAGCTTAGTCTTT+TGG - chr1_3:8734419-8734438 None:intergenic 30.0%
!! ATAACTATGCATTTAGCTTG+CGG - chr1_3:8734480-8734499 None:intergenic 30.0%
AAAATATGGATTTCAAGCCA+AGG - chr1_3:8734574-8734593 None:intergenic 30.0%
TTTCACCAACCCTATTTATT+TGG + chr1_3:8734629-8734648 Msa0102040:intron 30.0%
AGTGTATAAAATTTAGGGGT+GGG - chr1_3:8734658-8734677 None:intergenic 30.0%
CACCATATATAGAGAAGATA+AGG - chr1_3:8734690-8734709 None:intergenic 30.0%
!! CTCTATATATGGTGTTATTG+AGG + chr1_3:8734696-8734715 Msa0102040:intron 30.0%
TCTAAATCCAAAATGTTTGG+TGG - chr1_3:8734733-8734752 None:intergenic 30.0%
ACTCACCTGAAATATAAGTA+AGG + chr1_3:8734777-8734796 Msa0102040:intron 30.0%
ATTGGACTTAAGGAACAAAA+TGG - chr1_3:8734808-8734827 None:intergenic 30.0%
AATAACAATGCCTAAATGGA+GGG - chr1_3:8735011-8735030 None:intergenic 30.0%
TGCATAAACAATCAGAAAGA+TGG - chr1_3:8730383-8730402 None:intergenic 30.0%
!! AATTTCATCTCTGAAACTGT+CGG - chr1_3:8735396-8735415 None:intergenic 30.0%
CAAGATACATTTCTATGGTA+AGG - chr1_3:8735459-8735478 None:intergenic 30.0%
TACCAAATCAAAAATCATGG+AGG + chr1_3:8735547-8735566 Msa0102040:CDS 30.0%
ATAAGTGAATGGAACATACA+TGG + chr1_3:8735672-8735691 Msa0102040:CDS 30.0%
!! AAGCATCACAATTTTTCAAC+TGG + chr1_3:8735721-8735740 Msa0102040:CDS 30.0%
CAAATATGGTTGTGAAGAAA+GGG + chr1_3:8735931-8735950 Msa0102040:CDS 30.0%
TGAAGAAAGGGAAGAAAAAT+TGG + chr1_3:8735943-8735962 Msa0102040:CDS 30.0%
AAGGGAAGAAAAATTGGAAA+TGG + chr1_3:8735949-8735968 Msa0102040:CDS 30.0%
CATCTAAAAATCTCCAACAT+TGG - chr1_3:8731138-8731157 None:intergenic 30.0%
!! GATGATTTGGTTAAACATGA+AGG + chr1_3:8736029-8736048 Msa0102040:CDS 30.0%
!! TAGTTTAGCTTTGCCTATAT+GGG + chr1_3:8736121-8736140 Msa0102040:CDS 30.0%
TTGCAAAATTTGCATTACAC+TGG + chr1_3:8736190-8736209 Msa0102040:intron 30.0%
!!! GTTTGGTTCCTGTTTTTAAT+AGG - chr1_3:8736629-8736648 None:intergenic 30.0%
ATTATACCAAGATTCGTTTG+TGG + chr1_3:8736784-8736803 Msa0102040:intron 30.0%
AGTAATCCATTTATGAGGAT+TGG + chr1_3:8736989-8737008 Msa0102040:intron 30.0%
!!! GAATAGCATATAGTTTTGGA+GGG - chr1_3:8737265-8737284 None:intergenic 30.0%
!!! TGAATAGCATATAGTTTTGG+AGG - chr1_3:8737266-8737285 None:intergenic 30.0%
ATAGAGACTATGATTGCAAT+TGG + chr1_3:8737315-8737334 Msa0102040:CDS 30.0%
TAGAGACTATGATTGCAATT+GGG + chr1_3:8737316-8737335 Msa0102040:CDS 30.0%
GTGGAAATTTCATGATAGAA+TGG + chr1_3:8737388-8737407 Msa0102040:CDS 30.0%
CCTTAGACAATATTGGAGAT+TGG - chr1_3:8730060-8730079 None:intergenic 35.0%
CCAATCTCCAATATTGTCTA+AGG + chr1_3:8730057-8730076 Msa0102040:five_prime_UTR 35.0%
TAGCTTAAGTAGCAAGGATT+AGG - chr1_3:8730157-8730176 None:intergenic 35.0%
TAACAGTGCCTAAAATGAAG+GGG - chr1_3:8730251-8730270 None:intergenic 35.0%
!! CTCATAATCAAAGCTTTGGA+TGG - chr1_3:8730340-8730359 None:intergenic 35.0%
CAGAAGAAGATGAGAAAGAA+AGG - chr1_3:8730525-8730544 None:intergenic 35.0%
! GGATTCCTTGATTTTGCTTT+TGG - chr1_3:8730682-8730701 None:intergenic 35.0%
TCAAGGAATCCAAAGAAGAA+TGG + chr1_3:8730691-8730710 Msa0102040:CDS 35.0%
TTCTTCTTCATCGATCCATT+CGG - chr1_3:8730890-8730909 None:intergenic 35.0%
!! AAATTCTGGCATTGGTAACT+CGG - chr1_3:8730935-8730954 None:intergenic 35.0%
TATGTTGCAAATTCTGGCAT+TGG - chr1_3:8730943-8730962 None:intergenic 35.0%
TGAAAAAGGGGAAGAATGAT+TGG + chr1_3:8731073-8731092 Msa0102040:CDS 35.0%
TGATTGGAAATGGAAGAGTA+AGG + chr1_3:8731089-8731108 Msa0102040:CDS 35.0%
GAGTAAATGTAGACCAATGT+TGG + chr1_3:8731122-8731141 Msa0102040:CDS 35.0%
CAGAAAATTTCTTTGCCTGT+TGG + chr1_3:8731222-8731241 Msa0102040:CDS 35.0%
!! TAATTTGGCTTTGCCTCTAT+GGG + chr1_3:8731251-8731270 Msa0102040:CDS 35.0%
! CTTTTCTTTATTGTGGAGGA+CGG + chr1_3:8731743-8731762 Msa0102040:intron 35.0%
AGTATCAATACAGTGAAGAC+GGG - chr1_3:8732234-8732253 None:intergenic 35.0%
AGTTTACGACATGTCCAAAA+TGG + chr1_3:8732396-8732415 Msa0102040:CDS 35.0%
!!! GTTTGGTTCCTGTTTTTAAG+AGG - chr1_3:8732525-8732544 None:intergenic 35.0%
! AGCTGTCAATGAGAAGTATA+AGG - chr1_3:8732552-8732571 None:intergenic 35.0%
! TATGTTCCATTTTCTGCTCT+CGG - chr1_3:8732649-8732668 None:intergenic 35.0%
ATTATAGTAAGTTCCGGTTG+TGG + chr1_3:8732680-8732699 Msa0102040:intron 35.0%
ATTCTGATATTCTTGTGCTG+AGG + chr1_3:8732737-8732756 Msa0102040:CDS 35.0%
! AAACTACCTGAAGGTACAAT+TGG - chr1_3:8732854-8732873 None:intergenic 35.0%
CATTGTATGATACAATGTCG+TGG - chr1_3:8733012-8733031 None:intergenic 35.0%
CACGACATTGTATCATACAA+TGG + chr1_3:8733010-8733029 Msa0102040:CDS 35.0%
GACATTGTATCATACAATGG+AGG + chr1_3:8733013-8733032 Msa0102040:CDS 35.0%
GTAGAAGCAAGTGTGAAAAA+TGG + chr1_3:8733127-8733146 Msa0102040:CDS 35.0%
!!! GAATGGCATATAGTTTTGGA+GGG - chr1_3:8733168-8733187 None:intergenic 35.0%
!!! TGAATGGCATATAGTTTTGG+AGG - chr1_3:8733169-8733188 None:intergenic 35.0%
TTTCAAACCAAGGTAGTGAA+TGG - chr1_3:8733185-8733204 None:intergenic 35.0%
ATAGAGACTATGACTGCAAT+TGG + chr1_3:8733218-8733237 Msa0102040:intron 35.0%
TAGAGACTATGACTGCAATT+GGG + chr1_3:8733219-8733238 Msa0102040:intron 35.0%
TGGGATCACTTGATTATCAT+TGG + chr1_3:8733395-8733414 Msa0102040:CDS 35.0%
! TACGGAAGGTACAAGATATA+TGG - chr1_3:8733555-8733574 None:intergenic 35.0%
TATATCTTGTACCTTCCGTA+TGG + chr1_3:8733555-8733574 Msa0102040:intron 35.0%
ATATGTCTATACCATACGGA+AGG - chr1_3:8733569-8733588 None:intergenic 35.0%
TTGGTAAAATTTAGTGGGAC+TGG - chr1_3:8733793-8733812 None:intergenic 35.0%
AATCGGAAAATAGGCGATTT+AGG - chr1_3:8733933-8733952 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1_3:8734183-8734202 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + chr1_3:8733985-8734004 Msa0102040:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr1_3:8734115-8734134 Msa0102040:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr1_3:8734119-8734138 Msa0102040:intron 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr1_3:8734223-8734242 Msa0102040:intron 35.0%
!! TTTGAAACAGAGGGAGTATT+AGG + chr1_3:8734232-8734251 Msa0102040:intron 35.0%
CTGATAATACAACTAAGCAG+GGG - chr1_3:8734270-8734289 None:intergenic 35.0%
TTAATGCCTTGTAGAAACGT+TGG + chr1_3:8734529-8734548 Msa0102040:intron 35.0%
! ATTGCTTGTTGAATTGTCCT+TGG + chr1_3:8734554-8734573 Msa0102040:intron 35.0%
GAGTGTATAAAATTTAGGGG+TGG - chr1_3:8734659-8734678 None:intergenic 35.0%
!! TATGGTGTTATTGAGGTGTT+TGG + chr1_3:8734703-8734722 Msa0102040:intron 35.0%
!! ATGGTGTTATTGAGGTGTTT+GGG + chr1_3:8734704-8734723 Msa0102040:intron 35.0%
GGAAAATGGAGCTAAGTAAA+TGG + chr1_3:8734849-8734868 Msa0102040:intron 35.0%
ATAACAATGCCTAAATGGAG+GGG - chr1_3:8735010-8735029 None:intergenic 35.0%
GAATAACAATGCCTAAATGG+AGG - chr1_3:8735012-8735031 None:intergenic 35.0%
CTGGAATAACAATGCCTAAA+TGG - chr1_3:8735015-8735034 None:intergenic 35.0%
! CTAACACTGCACTTTAAAGA+TGG + chr1_3:8735035-8735054 Msa0102040:intron 35.0%
CTATCAAAATAGACCGAAGA+AGG - chr1_3:8735180-8735199 None:intergenic 35.0%
TGTGTGATCTTCAAACTTGT+AGG + chr1_3:8735485-8735504 Msa0102040:intron 35.0%
GTGTGATCTTCAAACTTGTA+GGG + chr1_3:8735486-8735505 Msa0102040:intron 35.0%
TCAAACTTGTAGGGAGAAAA+AGG + chr1_3:8735495-8735514 Msa0102040:intron 35.0%
TATGTTGTGAATTCTGGCAT+TGG - chr1_3:8735813-8735832 None:intergenic 35.0%
GCAAATATGGTTGTGAAGAA+AGG + chr1_3:8735930-8735949 Msa0102040:CDS 35.0%
TGGTTAAACATGAAGGTGAT+TGG + chr1_3:8736036-8736055 Msa0102040:CDS 35.0%
TTAAACATGAAGGTGATTGG+TGG + chr1_3:8736039-8736058 Msa0102040:CDS 35.0%
!! TGAGGTTGATGTAAAGAGAT+TGG + chr1_3:8736067-8736086 Msa0102040:CDS 35.0%
CAGAAAGTTTCTTTGCCTAT+TGG + chr1_3:8736092-8736111 Msa0102040:CDS 35.0%
!! GTAGTTTAGCTTTGCCTATA+TGG + chr1_3:8736120-8736139 Msa0102040:CDS 35.0%
AACATACCTTGTTCCCATAT+AGG - chr1_3:8736137-8736156 None:intergenic 35.0%
! TTTTGCAGGGATAGACAAAA+TGG + chr1_3:8736500-8736519 Msa0102040:intron 35.0%
TCTTCAGAAAGATACGTTTG+TGG + chr1_3:8736582-8736601 Msa0102040:CDS 35.0%
GCACAAAGCCTATTAAAAAC+AGG + chr1_3:8736618-8736637 Msa0102040:CDS 35.0%
! AGCTGTCAATGAGAAGTATA+AGG - chr1_3:8732552-8732571 None:intergenic 35.0%
ATTCCTCAGCACAAAGATAT+CGG - chr1_3:8736847-8736866 None:intergenic 35.0%
TTGCTACCAATCCTCATAAA+TGG - chr1_3:8736998-8737017 None:intergenic 35.0%
TCATGAACGAGATCTTTGTA+TGG + chr1_3:8737144-8737163 Msa0102040:CDS 35.0%
GTAGAAGCAAGTGTGAAAAA+TGG + chr1_3:8733127-8733146 Msa0102040:CDS 35.0%
CTATATGCTATTCACTACCT+TGG + chr1_3:8737272-8737291 Msa0102040:CDS 35.0%
ACGTAGGACTGAGTTAAATA+TGG + chr1_3:8737448-8737467 Msa0102040:CDS 35.0%
GGACTGAGTTAAATATGGAA+CGG + chr1_3:8737453-8737472 Msa0102040:CDS 35.0%
TGGGATCACTTGATTATCAT+TGG + chr1_3:8733395-8733414 Msa0102040:CDS 35.0%
!! GAGGATTAGCTTAAGTAGCA+AGG - chr1_3:8730163-8730182 None:intergenic 40.0%
! TGTGTAGTCCCCTTCATTTT+AGG + chr1_3:8730240-8730259 Msa0102040:five_prime_UTR 40.0%
AATAGACCGAAGAAGAAGGA+CGG - chr1_3:8730417-8730436 None:intergenic 40.0%
TCGAAATAGACCGAAGAAGA+AGG - chr1_3:8730421-8730440 None:intergenic 40.0%
ATTGAGAGAATGCCATCACA+AGG + chr1_3:8730468-8730487 Msa0102040:CDS 40.0%
GTAAGGTGAGCCTATTCTAA+TGG + chr1_3:8730490-8730509 Msa0102040:intron 40.0%
CTAGGCGAAAAAATCGGTAA+AGG + chr1_3:8730739-8730758 Msa0102040:intron 40.0%
GAAAATTGGAACGGTGAACA+TGG + chr1_3:8730765-8730784 Msa0102040:CDS 40.0%
AAGACGATGATGTAAGCGAA+TGG + chr1_3:8730791-8730810 Msa0102040:CDS 40.0%
GTAAGCGAATGGAACATACA+TGG + chr1_3:8730802-8730821 Msa0102040:CDS 40.0%
GGACAGATTTATTTCCCGAA+TGG + chr1_3:8730872-8730891 Msa0102040:CDS 40.0%
TCTTCTTCATCGATCCATTC+GGG - chr1_3:8730889-8730908 None:intergenic 40.0%
!! AATTCTGGCATTGGTAACTC+GGG - chr1_3:8730934-8730953 None:intergenic 40.0%
TGGATACTTGCATGGTAACT+TGG - chr1_3:8730989-8731008 None:intergenic 40.0%
CAAGTATCCAGAAGAAGGAT+GGG + chr1_3:8730999-8731018 Msa0102040:intron 40.0%
AAGTATCCAGAAGAAGGATG+GGG + chr1_3:8731000-8731019 Msa0102040:intron 40.0%
AGGGGAAGAATGATTGGAAA+TGG + chr1_3:8731079-8731098 Msa0102040:CDS 40.0%
! GGAAGAGTAAGGTTGTGTTT+TGG + chr1_3:8731100-8731119 Msa0102040:CDS 40.0%
!! GTAATTTGGCTTTGCCTCTA+TGG + chr1_3:8731250-8731269 Msa0102040:CDS 40.0%
TACATACCTTGTTCCCATAG+AGG - chr1_3:8731267-8731286 None:intergenic 40.0%
CTTTAATGCCAGAAAGTCGT+AGG - chr1_3:8731451-8731470 None:intergenic 40.0%
! ACGACTTTCTGGCATTAAAG+TGG + chr1_3:8731451-8731470 Msa0102040:intron 40.0%
TTTCCTAAGCAGAAAGTCGT+AGG - chr1_3:8731593-8731612 None:intergenic 40.0%
ATTTGGGTAGACCAGGATAT+TGG - chr1_3:8731977-8731996 None:intergenic 40.0%
AACAAGAATTTGGGTAGACC+AGG - chr1_3:8731984-8732003 None:intergenic 40.0%
GCAACTTTGATTGTGACGTA+GGG - chr1_3:8732023-8732042 None:intergenic 40.0%
AGCAACTTTGATTGTGACGT+AGG - chr1_3:8732024-8732043 None:intergenic 40.0%
TCTTCAGAAAGCTACGTTTG+TGG + chr1_3:8732478-8732497 Msa0102040:CDS 40.0%
GCACAAAGCCTCTTAAAAAC+AGG + chr1_3:8732514-8732533 Msa0102040:CDS 40.0%
! GAGAAGTATAAGGTCACGTT+TGG - chr1_3:8732542-8732561 None:intergenic 40.0%
! ATGTTCCATTTTCTGCTCTC+GGG - chr1_3:8732648-8732667 None:intergenic 40.0%
AATCAGTAAGTTGCCACAAC+CGG - chr1_3:8732696-8732715 None:intergenic 40.0%
! GATCAGTCCATTTTCAACTC+TGG + chr1_3:8732808-8732827 Msa0102040:CDS 40.0%
CATGATGCCAGAGTTGAAAA+TGG - chr1_3:8732818-8732837 None:intergenic 40.0%
! CATTTTCAACTCTGGCATCA+TGG + chr1_3:8732816-8732835 Msa0102040:CDS 40.0%
! TACCTGAAGGTACAATTGGA+AGG - chr1_3:8732850-8732869 None:intergenic 40.0%
AATGTAGTGTGCTTATGAGC+CGG + chr1_3:8732984-8733003 Msa0102040:intron 40.0%
TCATACAATGGAGGTGATCA+AGG + chr1_3:8733022-8733041 Msa0102040:CDS 40.0%
CATACAATGGAGGTGATCAA+GGG + chr1_3:8733023-8733042 Msa0102040:CDS 40.0%
ACTTGCTTCTACTGTTGTGT+TGG - chr1_3:8733119-8733138 None:intergenic 40.0%
CTATATGCCATTCACTACCT+TGG + chr1_3:8733175-8733194 Msa0102040:CDS 40.0%
! ACTACCTTGGTTTGAAACCT+TGG + chr1_3:8733188-8733207 Msa0102040:intron 40.0%
AATGCCAAGGTTTCAAACCA+AGG - chr1_3:8733195-8733214 None:intergenic 40.0%
TAGTCTCTATAGCAATGCCA+AGG - chr1_3:8733208-8733227 None:intergenic 40.0%
CATGAAAATTCCACCAACGT+TGG - chr1_3:8733285-8733304 None:intergenic 40.0%
! AACGTAGGACTGAGTTGAAT+TGG + chr1_3:8733350-8733369 Msa0102040:CDS 40.0%
! ACGTAGGACTGAGTTGAATT+GGG + chr1_3:8733351-8733370 Msa0102040:CDS 40.0%
GTCACTGATCCTAGAAAATC+TGG + chr1_3:8733427-8733446 Msa0102040:intron 40.0%
!! ATTGCACACATGTTGACTTG+TGG - chr1_3:8733685-8733704 None:intergenic 40.0%
AGTCATGGAGACATCAAAGT+TGG - chr1_3:8733812-8733831 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_3:8733980-8733999 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr1_3:8734118-8734137 Msa0102040:intron 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr1_3:8734222-8734241 Msa0102040:intron 40.0%
!!! AACCCTTTTAGAGTTGCGAT+TGG + chr1_3:8734393-8734412 Msa0102040:intron 40.0%
CAATTGCCAACGTTTCTACA+AGG - chr1_3:8734538-8734557 None:intergenic 40.0%
GGTGTCCAAATAAATAGGGT+TGG - chr1_3:8734637-8734656 None:intergenic 40.0%
GGTGGGTGTCCAAATAAATA+GGG - chr1_3:8734641-8734660 None:intergenic 40.0%
!! CTTTAAAGTGCAGTGTTAGC+TGG - chr1_3:8735034-8735053 None:intergenic 40.0%
TTTGAGAGAATGCCATCACA+AGG + chr1_3:8735224-8735243 Msa0102040:CDS 40.0%
AAAAATGAAAGCGGCGTTAG+AGG + chr1_3:8735521-8735540 Msa0102040:CDS 40.0%
!! GGCCTCCATGATTTTTGATT+TGG - chr1_3:8735552-8735571 None:intergenic 40.0%
AAGACGACGACATAAGTGAA+TGG + chr1_3:8735661-8735680 Msa0102040:CDS 40.0%
GGACAGATTTATTTCCCGAA+TGG + chr1_3:8730872-8730891 Msa0102040:CDS 40.0%
TTCTTCTTCGTCGATCCATT+CGG - chr1_3:8735760-8735779 None:intergenic 40.0%
!! AATTCTGGCATTGGTAACTC+GGG - chr1_3:8730934-8730953 None:intergenic 40.0%
!! GAATTCTGGCATTGGTAACT+CGG - chr1_3:8735805-8735824 None:intergenic 40.0%
CAAGTATCCAGAAGAAGGAT+GGG + chr1_3:8730999-8731018 Msa0102040:intron 40.0%
AAGTATCCAGAAGAAGGATG+GGG + chr1_3:8731000-8731019 Msa0102040:intron 40.0%
! GGAAGAGTAGAGTTGTGTTT+TGG + chr1_3:8735970-8735989 Msa0102040:CDS 40.0%
GAGTAAGTGTAGACCAATGT+TGG + chr1_3:8735992-8736011 Msa0102040:CDS 40.0%
!!! AGGTGATTGGTGGTTTTTTG+AGG + chr1_3:8736049-8736068 Msa0102040:CDS 40.0%
GCTAAACTACACGAACCAAT+AGG - chr1_3:8736110-8736129 None:intergenic 40.0%
! CGTATCTTTCTGAAGAGTGT+AGG - chr1_3:8736578-8736597 None:intergenic 40.0%
! GAGAAGTATAAGGTCACGTT+TGG - chr1_3:8732542-8732561 None:intergenic 40.0%
AGGTTCCATTCTTTCCTCTT+GGG - chr1_3:8736752-8736771 None:intergenic 40.0%
TAGGTTCCATTCTTTCCTCT+TGG - chr1_3:8736753-8736772 None:intergenic 40.0%
AAGTTGCCACAAACGAATCT+TGG - chr1_3:8736793-8736812 None:intergenic 40.0%
TTTCCTCAAATGTCTGCTAC+TGG + chr1_3:8736885-8736904 Msa0102040:CDS 40.0%
TTACCAGTAGCAGACATTTG+AGG - chr1_3:8736891-8736910 None:intergenic 40.0%
! TACCTGAAGGTGCAATTAGA+GGG - chr1_3:8736954-8736973 None:intergenic 40.0%
! TTACCTGAAGGTGCAATTAG+AGG - chr1_3:8736955-8736974 None:intergenic 40.0%
CACGACATTGTATCATACAC+CGG + chr1_3:8737107-8737126 Msa0102040:CDS 40.0%
AGATCTCGTTCATGAATCCT+TGG - chr1_3:8737139-8737158 None:intergenic 40.0%
TGAACGAGATCTTTGTATGG+TGG + chr1_3:8737147-8737166 Msa0102040:CDS 40.0%
AGATCTTTGTATGGTGGCAT+AGG + chr1_3:8737153-8737172 Msa0102040:CDS 40.0%
ACTTGCTTCTACTGTTGTGT+TGG - chr1_3:8733119-8733138 None:intergenic 40.0%
! ACTACCTTGGTTTGAAACCT+TGG + chr1_3:8733188-8733207 Msa0102040:intron 40.0%
AATGCCAAGGTTTCAAACCA+AGG - chr1_3:8733195-8733214 None:intergenic 40.0%
TAGTCTCTATAGCAATGCCA+AGG - chr1_3:8733208-8733227 None:intergenic 40.0%
TGATTGCAATTGGGATGTAG+TGG + chr1_3:8737325-8737344 Msa0102040:CDS 40.0%
!! ATTGGGATGTAGTGGATCAA+AGG + chr1_3:8737333-8737352 Msa0102040:CDS 40.0%
!! TTGGGATGTAGTGGATCAAA+GGG + chr1_3:8737334-8737353 Msa0102040:CDS 40.0%
AAGGGTTTATGCTAGTGATG+TGG + chr1_3:8737352-8737371 Msa0102040:CDS 40.0%
CATGAAATTTCCACCAACGT+TGG - chr1_3:8737382-8737401 None:intergenic 40.0%
! GTAGGTTGACAAAAGAACGT+AGG + chr1_3:8737432-8737451 Msa0102040:CDS 40.0%
ACGGAGAAGATCTAGTAAGA+TGG + chr1_3:8737472-8737491 Msa0102040:CDS 40.0%
CGGAGAAGATCTAGTAAGAT+GGG + chr1_3:8737473-8737492 Msa0102040:CDS 40.0%
AGAAGAAGGACGGAGAAGAA+GGG - chr1_3:8730407-8730426 None:intergenic 45.0%
AAGAAGAAGGACGGAGAAGA+AGG - chr1_3:8730408-8730427 None:intergenic 45.0%
TCTTCTCCGTCCTTCTTCTT+CGG + chr1_3:8730408-8730427 Msa0102040:CDS 45.0%
GAGAATGCCATCACAAGGTA+AGG + chr1_3:8730473-8730492 Msa0102040:intron 45.0%
GTGAGCCTATTCTAATGGCA+TGG + chr1_3:8730495-8730514 Msa0102040:intron 45.0%
GGATGCCATGCCATTAGAAT+AGG - chr1_3:8730503-8730522 None:intergenic 45.0%
! ATTGGTAACTCGGGACATGT+TGG - chr1_3:8730925-8730944 None:intergenic 45.0%
CCTTCTTCTGGATACTTGCA+TGG - chr1_3:8730997-8731016 None:intergenic 45.0%
CCATGCAAGTATCCAGAAGA+AGG + chr1_3:8730994-8731013 Msa0102040:intron 45.0%
GCAAGTATCCAGAAGAAGGA+TGG + chr1_3:8730998-8731017 Msa0102040:intron 45.0%
! GATGGGGTAGGGAAGTTTTA+AGG + chr1_3:8731016-8731035 Msa0102040:intron 45.0%
! GCCTGTTGGGTCTTGTAATT+TGG + chr1_3:8731236-8731255 Msa0102040:CDS 45.0%
GCCAAATTACAAGACCCAAC+AGG - chr1_3:8731240-8731259 None:intergenic 45.0%
AAGAATACTGAAAACGCGCC+AGG + chr1_3:8731414-8731433 Msa0102040:intron 45.0%
AACAATACTGAAAACGCGCC+AGG + chr1_3:8731556-8731575 Msa0102040:intron 45.0%
GAACCTACGACTTTCTGCTT+AGG + chr1_3:8731587-8731606 Msa0102040:intron 45.0%
AGAGTGTAGGACTGTTGCAT+AGG - chr1_3:8732461-8732480 None:intergenic 45.0%
! CGTAGCTTTCTGAAGAGTGT+AGG - chr1_3:8732474-8732493 None:intergenic 45.0%
! CATTTTCTGCTCTCGGGTTT+CGG - chr1_3:8732642-8732661 None:intergenic 45.0%
TTTCCTCAAATGTCTGCCAC+TGG + chr1_3:8732781-8732800 Msa0102040:CDS 45.0%
TTCCTCAAATGTCTGCCACT+GGG + chr1_3:8732782-8732801 Msa0102040:CDS 45.0%
!! AATGGACTGATCATTCCCAG+TGG - chr1_3:8732800-8732819 None:intergenic 45.0%
AGCCTTCCAATTGTACCTTC+AGG + chr1_3:8732845-8732864 Msa0102040:CDS 45.0%
CTATGACTGCAATTGGGATG+TGG + chr1_3:8733225-8733244 Msa0102040:CDS 45.0%
!! ATTGGGATGTGGTGGATCAA+AGG + chr1_3:8733236-8733255 Msa0102040:CDS 45.0%
!! TTGGGATGTGGTGGATCAAA+GGG + chr1_3:8733237-8733256 Msa0102040:CDS 45.0%
!! GTGGTGGATCAAAGGGTTTA+TGG + chr1_3:8733244-8733263 Msa0102040:CDS 45.0%
! AAGGGTTTATGGTAGTGACG+TGG + chr1_3:8733255-8733274 Msa0102040:CDS 45.0%
! GTAGGTTGACAAGACAACGT+AGG + chr1_3:8733335-8733354 Msa0102040:CDS 45.0%
! GGACTGAGTTGAATTGGGAA+AGG + chr1_3:8733356-8733375 Msa0102040:CDS 45.0%
TTCCTCCAGCTAAGGATACA+TGG + chr1_3:8733634-8733653 Msa0102040:intron 45.0%
!! TCCAACTTGCTATCGGCTAA+AGG + chr1_3:8733894-8733913 Msa0102040:intron 45.0%
TCCTTTAGCCGATAGCAAGT+TGG - chr1_3:8733898-8733917 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_3:8733981-8734000 None:intergenic 45.0%
! GGCCAATCGCAACTCTAAAA+GGG - chr1_3:8734398-8734417 None:intergenic 45.0%
TGGCCAATCGCAACTCTAAA+AGG - chr1_3:8734399-8734418 None:intergenic 45.0%
GGGTGGGTGTCCAAATAAAT+AGG - chr1_3:8734642-8734661 None:intergenic 45.0%
! TGGGTGTCCACCAAACATTT+TGG + chr1_3:8734723-8734742 Msa0102040:intron 45.0%
!! GAGAGCACCATCCAAAACTT+TGG + chr1_3:8735086-8735105 Msa0102040:CDS 45.0%
AGCACCATCCAAAACTTTGG+TGG + chr1_3:8735089-8735108 Msa0102040:CDS 45.0%
! GAATCGGACCACCAAAGTTT+TGG - chr1_3:8735100-8735119 None:intergenic 45.0%
AATAGACCGAAGAAGGCAGA+CGG - chr1_3:8735173-8735192 None:intergenic 45.0%
!! CAAAGAGCATCCAACAAGTG+AGG - chr1_3:8735208-8735227 None:intergenic 45.0%
TCATGGAGGCCAAAGACAAA+TGG + chr1_3:8735561-8735580 Msa0102040:CDS 45.0%
TCTTCTTCGTCGATCCATTC+GGG - chr1_3:8735759-8735778 None:intergenic 45.0%
! ATTGGTAACTCGGGACATGT+TGG - chr1_3:8730925-8730944 None:intergenic 45.0%
CCTTCTTCTGGATACTTGCA+TGG - chr1_3:8730997-8731016 None:intergenic 45.0%
CCATGCAAGTATCCAGAAGA+AGG + chr1_3:8730994-8731013 Msa0102040:intron 45.0%
GCAAGTATCCAGAAGAAGGA+TGG + chr1_3:8730998-8731017 Msa0102040:intron 45.0%
! GATGGGGTAGGGAAGTTTTA+AGG + chr1_3:8731016-8731035 Msa0102040:intron 45.0%
GCTTTGCCTATATGGGAACA+AGG + chr1_3:8736128-8736147 Msa0102040:CDS 45.0%
AGAGTGTAGGACTGTTGCAT+AGG - chr1_3:8732461-8732480 None:intergenic 45.0%
TTCCTCTTGGGTTTCCAATC+CGG - chr1_3:8736740-8736759 None:intergenic 45.0%
GGAAACCCAAGAGGAAAGAA+TGG + chr1_3:8736744-8736763 Msa0102040:intron 45.0%
ACTCCGATATCTTTGTGCTG+AGG + chr1_3:8736841-8736860 Msa0102040:CDS 45.0%
! CTCGATCCATTTTCAACGCT+GGG + chr1_3:8736913-8736932 Msa0102040:CDS 45.0%
! CATCATCCCAGCGTTGAAAA+TGG - chr1_3:8736922-8736941 None:intergenic 45.0%
CGGTGTATGATACAATGTCG+TGG - chr1_3:8737109-8737128 None:intergenic 45.0%
GACATTGTATCATACACCGG+AGG + chr1_3:8737110-8737129 Msa0102040:CDS 45.0%
AGGCTCACCTTACCTTGTGA+TGG - chr1_3:8730483-8730502 None:intergenic 50.0%
ATCCAGAAGAAGGATGGGGT+AGG + chr1_3:8731004-8731023 Msa0102040:intron 50.0%
TCCAGAAGAAGGATGGGGTA+GGG + chr1_3:8731005-8731024 Msa0102040:intron 50.0%
GCTTTGCCTCTATGGGAACA+AGG + chr1_3:8731258-8731277 Msa0102040:CDS 50.0%
ATACTGAAAACGCGCCAGGT+AGG + chr1_3:8731418-8731437 Msa0102040:intron 50.0%
TACTGAAAACGCGCCAGGTA+GGG + chr1_3:8731419-8731438 Msa0102040:intron 50.0%
ATACTGAAAACGCGCCAGGT+AGG + chr1_3:8731418-8731437 Msa0102040:intron 50.0%
TACTGAAAACGCGCCAGGTA+GGG + chr1_3:8731419-8731438 Msa0102040:intron 50.0%
GATGGTTCGAATCTGCCAAC+CGG - chr1_3:8732611-8732630 None:intergenic 50.0%
CGAAACCCGAGAGCAGAAAA+TGG + chr1_3:8732640-8732659 Msa0102040:CDS 50.0%
TTCCCAGTGGCAGACATTTG+AGG - chr1_3:8732787-8732806 None:intergenic 50.0%
ATGATACAATGTCGTGGCGC+CGG - chr1_3:8733006-8733025 None:intergenic 50.0%
TGACTGCAATTGGGATGTGG+TGG + chr1_3:8733228-8733247 Msa0102040:CDS 50.0%
CTCTAGTGTTCCTCCAGCTA+AGG + chr1_3:8733626-8733645 Msa0102040:intron 50.0%
CACCATGTATCCTTAGCTGG+AGG - chr1_3:8733639-8733658 None:intergenic 50.0%
GAGCACCATGTATCCTTAGC+TGG - chr1_3:8733642-8733661 None:intergenic 50.0%
GGAAGACTGCAAGTCGAATG+TGG - chr1_3:8733664-8733683 None:intergenic 50.0%
!!! CGGACCACCAAAGTTTTGGA+TGG - chr1_3:8735096-8735115 None:intergenic 50.0%
AGAAGGCAGACGGAGAAGAA+GGG - chr1_3:8735163-8735182 None:intergenic 50.0%
AAGAAGGCAGACGGAGAAGA+AGG - chr1_3:8735164-8735183 None:intergenic 50.0%
TCTTCTCCGTCTGCCTTCTT+CGG + chr1_3:8735164-8735183 Msa0102040:CDS 50.0%
GATAGTGCAGCCTCACTTGT+TGG + chr1_3:8735195-8735214 Msa0102040:CDS 50.0%
AGGCTCGCTTTACCTTGTGA+TGG - chr1_3:8735239-8735258 None:intergenic 50.0%
ATCCAGAAGAAGGATGGGGT+AGG + chr1_3:8731004-8731023 Msa0102040:intron 50.0%
TCCAGAAGAAGGATGGGGTA+GGG + chr1_3:8731005-8731024 Msa0102040:intron 50.0%
GGAAGATTCGAACCATCACC+CGG + chr1_3:8736718-8736737 Msa0102040:intron 50.0%
ATTCGAACCATCACCCGGAT+TGG + chr1_3:8736723-8736742 Msa0102040:intron 50.0%
TCCTCTTGGGTTTCCAATCC+GGG - chr1_3:8736739-8736758 None:intergenic 50.0%
! GCTCGATCCATTTTCAACGC+TGG + chr1_3:8736912-8736931 Msa0102040:CDS 50.0%
AGCCCTCTAATTGCACCTTC+AGG + chr1_3:8736949-8736968 Msa0102040:CDS 50.0%
ATGATACAATGTCGTGGCGC+AGG - chr1_3:8733006-8733025 None:intergenic 50.0%
CATGAATCCTTGGTCACCTC+CGG - chr1_3:8737129-8737148 None:intergenic 50.0%
TCCCTACCCCATCCTTCTTC+TGG - chr1_3:8731009-8731028 None:intergenic 55.0%
ACTGAAAACGCGCCAGGTAG+GGG + chr1_3:8731420-8731439 Msa0102040:intron 55.0%
GGGTCGAACCTACGACTTTC+TGG + chr1_3:8731440-8731459 Msa0102040:intron 55.0%
ACTGAAAACGCGCCAGGTAG+GGG + chr1_3:8731420-8731439 Msa0102040:intron 55.0%
CGCTCTATCCACTGAGCTAC+AGG + chr1_3:8731617-8731636 Msa0102040:intron 55.0%
TGCTCTCGGGTTTCGGATTC+GGG - chr1_3:8732635-8732654 None:intergenic 55.0%
CTGCTCTCGGGTTTCGGATT+CGG - chr1_3:8732636-8732655 None:intergenic 55.0%
GAGCACGCACGAACATTCTC+TGG - chr1_3:8733711-8733730 None:intergenic 55.0%
GCGCTAACGCTGCTGAACTA+GGG - chr1_3:8733871-8733890 None:intergenic 55.0%
AGCGCTAACGCTGCTGAACT+AGG - chr1_3:8733872-8733891 None:intergenic 55.0%
!! GCGCTCGTCCAACTTGCTAT+CGG + chr1_3:8733887-8733906 Msa0102040:intron 55.0%
GTTCGCAGTCCCCTCCATTT+AGG + chr1_3:8734998-8735017 Msa0102040:intron 55.0%
TCCCTACCCCATCCTTCTTC+TGG - chr1_3:8731009-8731028 None:intergenic 55.0%
ATGACGTTTGCGGACGGAGA+TGG - chr1_3:8736679-8736698 None:intergenic 55.0%
CAAGGCATGACGTTTGCGGA+CGG - chr1_3:8736685-8736704 None:intergenic 55.0%
TGGGTTTCCAATCCGGGTGA+TGG - chr1_3:8736733-8736752 None:intergenic 55.0%
! ACCCGGATTGGAAACCCAAG+AGG + chr1_3:8736735-8736754 Msa0102040:intron 55.0%
TCATACACCGGAGGTGACCA+AGG + chr1_3:8737119-8737138 Msa0102040:CDS 55.0%
GTGATGTGGCACACCAACGT+TGG + chr1_3:8737366-8737385 Msa0102040:CDS 55.0%
ATGTGGCACACCAACGTTGG+TGG + chr1_3:8737369-8737388 Msa0102040:CDS 55.0%
TCGTAGGTTCGACCCCTACC+TGG - chr1_3:8731435-8731454 None:intergenic 60.0%
TCGTAGGTTCGACCCCTACC+TGG - chr1_3:8731435-8731454 None:intergenic 60.0%
AGCAAGCGCCTGTAGCTCAG+TGG - chr1_3:8731628-8731647 None:intergenic 60.0%
CAATGCACGGCGTTTGCGGA+CGG - chr1_3:8732581-8732600 None:intergenic 60.0%
CTGCCAATGCACGGCGTTTG+CGG - chr1_3:8732585-8732604 None:intergenic 60.0%
AACCGGCACCTGCCAATGCA+CGG - chr1_3:8732594-8732613 None:intergenic 60.0%
CGGGTTTCGGATTCGGGTGA+TGG - chr1_3:8732629-8732648 None:intergenic 60.0%
CGTCCGCAAACGTCATGCCT+TGG + chr1_3:8736683-8736702 Msa0102040:CDS 60.0%
CCGCCAAGGCATGACGTTTG+CGG - chr1_3:8736689-8736708 None:intergenic 60.0%
CCGCAAACGTCATGCCTTGG+CGG + chr1_3:8736686-8736705 Msa0102040:CDS 60.0%
ACGGCGTTTGCGGACGGAGA+TGG - chr1_3:8732575-8732594 None:intergenic 65.0%
CGTCCGCAAACGCCGTGCAT+TGG + chr1_3:8732579-8732598 Msa0102040:CDS 65.0%
! CGCAAACGCCGTGCATTGGC+AGG + chr1_3:8732583-8732602 Msa0102040:CDS 65.0%
!! GTGCATTGGCAGGTGCCGGT+TGG + chr1_3:8732593-8732612 Msa0102040:CDS 65.0%
GTGACGTGGCGCACCAACGT+TGG + chr1_3:8733269-8733288 Msa0102040:CDS 65.0%
ACGTGGCGCACCAACGTTGG+TGG + chr1_3:8733272-8733291 Msa0102040:CDS 65.0%
! ATGCCTTGGCGGACGCAGGT+TGG + chr1_3:8736697-8736716 Msa0102040:intron 65.0%
CTTCCAACCTGCGTCCGCCA+AGG - chr1_3:8736703-8736722 None:intergenic 65.0%
! CGCCGTGCATTGGCAGGTGC+CGG + chr1_3:8732589-8732608 Msa0102040:CDS 70.0%
! CGTCATGCCTTGGCGGACGC+AGG + chr1_3:8736693-8736712 Msa0102040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8729974 8737565 8729974 ID=Msa0102040;Name=Msa0102040
chr1_3 mRNA 8729974 8737565 8729974 ID=Msa0102040-mRNA-1;Parent=Msa0102040;Name=Msa0102040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=324|0.2|0.06|1|0.4|0.18|16|0|1076
chr1_3 exon 8729974 8730489 8729974 ID=Msa0102040-mRNA-1:exon:3478;Parent=Msa0102040-mRNA-1
chr1_3 exon 8730637 8730733 8730637 ID=Msa0102040-mRNA-1:exon:3479;Parent=Msa0102040-mRNA-1
chr1_3 exon 8730743 8730989 8730743 ID=Msa0102040-mRNA-1:exon:3480;Parent=Msa0102040-mRNA-1
chr1_3 exon 8731038 8731279 8731038 ID=Msa0102040-mRNA-1:exon:3481;Parent=Msa0102040-mRNA-1
chr1_3 exon 8732386 8732544 8732386 ID=Msa0102040-mRNA-1:exon:3482;Parent=Msa0102040-mRNA-1
chr1_3 exon 8732570 8732685 8732570 ID=Msa0102040-mRNA-1:exon:3483;Parent=Msa0102040-mRNA-1
chr1_3 exon 8732691 8732866 8732691 ID=Msa0102040-mRNA-1:exon:3484;Parent=Msa0102040-mRNA-1
chr1_3 exon 8732991 8733196 8732991 ID=Msa0102040-mRNA-1:exon:3485;Parent=Msa0102040-mRNA-1
chr1_3 exon 8733224 8733426 8733224 ID=Msa0102040-mRNA-1:exon:3486;Parent=Msa0102040-mRNA-1
chr1_3 exon 8735054 8735245 8735054 ID=Msa0102040-mRNA-1:exon:3487;Parent=Msa0102040-mRNA-1
chr1_3 exon 8735507 8735603 8735507 ID=Msa0102040-mRNA-1:exon:3488;Parent=Msa0102040-mRNA-1
chr1_3 exon 8735613 8735859 8735613 ID=Msa0102040-mRNA-1:exon:3489;Parent=Msa0102040-mRNA-1
chr1_3 exon 8735908 8736149 8735908 ID=Msa0102040-mRNA-1:exon:3490;Parent=Msa0102040-mRNA-1
chr1_3 exon 8736508 8736714 8736508 ID=Msa0102040-mRNA-1:exon:3491;Parent=Msa0102040-mRNA-1
chr1_3 exon 8736841 8736970 8736841 ID=Msa0102040-mRNA-1:exon:3492;Parent=Msa0102040-mRNA-1
chr1_3 exon 8737088 8737565 8737088 ID=Msa0102040-mRNA-1:exon:3493;Parent=Msa0102040-mRNA-1
chr1_3 five_prime_UTR 8729974 8730297 8729974 ID=Msa0102040-mRNA-1:five_prime_utr;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8730298 8730489 8730298 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8730637 8730733 8730637 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8730743 8730989 8730743 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8731038 8731279 8731038 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8732386 8732544 8732386 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8732570 8732685 8732570 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8732691 8732866 8732691 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8732991 8733196 8732991 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8733224 8733426 8733224 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8735054 8735245 8735054 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8735507 8735603 8735507 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8735613 8735859 8735613 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8735908 8736149 8735908 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8736508 8736714 8736508 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8736841 8736970 8736841 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
chr1_3 CDS 8737088 8737565 8737088 ID=Msa0102040-mRNA-1:cds;Parent=Msa0102040-mRNA-1
Gene Sequence

>Msa0102040

ATGGATGTTTCAAATCTTCATAAGTTGGTGAAGACAGCACCATCCAAAGCTTTGATTATGAGATTCAATTTGTTATGTCTTTCCATCTTTCTGATTGTTTATGCAACCCTTCTTCTCCGTCCTTCTTCTTCGGTCTATTTCGATAATGCAGCTTCACTTGTTAGATGTTCATTGAGAGAATGCCATCACAAGGGAGAAAATAGCATAAAAATCAAAGCAGTGTTAGAGGAATTACCAAAAGCAAAATCAAGGAATCCAAAGAAGAATGGAACTAAGATAGAAGTACCAAGCGAAAAAATCGGTAAAGGAATGAAAATTGGAACGGTGAACATGGATGAAGACGATGATGTAAGCGAATGGAACATACATGGAGAAACAATACCAATTAATTTCGACAAAGTATCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATCGATGAAGAAGAAGAAAGCGACGTTCCAACATGTCCCGAGTTACCAATGCCAGAATTTGCAACATATGAAAACATGGACATAATAGTTGCCAAGTTACAAGTCCATCTTATTGTAGCAAATATGGTTGTGAAAAAGGGGAAGAATGATTGGAAATGGAAGAGTAAGGTTGTGTTTTGGAGTAAATGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTAAAAATGAAGGTGATTGGTGGTTTTATGAAGTTGATGTAAAGAAGTTGGAACAGAAAATTTCTTTGCCTGTTGGGTCTTGTAATTTGGCTTTGCCTCTATGGGAACAAGGGATTGACAAAGTTTACGACATGTCCAAAATGGAACAAAACGTAAGAAGCAAAACAAGAGCAAAACATGAAGCCTATGCAACAGTCCTACACTCTTCAGAAAGCTACGTTTGTGGAGCAATAACACTTGCACAAAGCCTCTTAAAAACAGGAACCAAACCTCCATCTCCGTCCGCAAACGCCGTGCATTGGCAGGTGCCGGTTGGCAGATTCGAACCATCACCCGAATCCGAAACCCGAGAGCAGAAAATGGAACATACAATGAGTATAATTATATTCCGGTTGTGGCAACTTACTGATTATGAGAAAATCATCTTTATAGATTCTGATATTCTTGTGCTGAGGAATCTTGATATTCTCTTCAACTTTCCTCAAATGTCTGCCACTGGGAATGATCAGTCCATTTTCAACTCTGGCATCATGGTTATTGAGCCTTCCAATTGTACCTTCAGTGTGCTTATGAGCCGGCGCCACGACATTGTATCATACAATGGAGGTGATCAAGGGTTTCTAAATGAGATATTTGTGTGGTGGCATAGACTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGGCCAACACAACAGTAGAAGCAAGTGTGAAAAATGGCTTATTTAGTGCTGACCCTCCAAAACTATATGCCATTCACTACCTTGACTATGACTGCAATTGGGATGTGGTGGATCAAAGGGTTTATGGTAGTGACGTGGCGCACCAACGTTGGTGGAATTTTCATGATAGAATGGACAAGAAGTTACAAAGTTTTTGTAGGTTGACAAGACAACGTAGGACTGAGTTGAATTGGGAAAGGAGAAGATCTTATAAGATGGGATCACTTGATTATCATTGGAAGATTAATATGGATGTTTCAAATGTTAATAAGTTGGTGAAGAGAGCACCATCCAAAACTTTGGTGGTCCGATTCAATTTGTTCTGTTTTGCCATCTTTCTGATTGTTTATGCAACCCTTCTTCTCCGTCTGCCTTCTTCGGTCTATTTTGATAGTGCAGCCTCACTTGTTGGATGCTCTTTGAGAGAATGCCATCACAAGGGAGAAAAAGGCATAAAAATGAAAGCGGCGTTAGAGGAATTACCAAATCAAAAATCATGGAGGCCAAAGACAAATGGAACTAAAATAGAAGTACCAAGCGAAATAATCGGTAAAGAAATGAAAATTGGAATGGTGAACATGAATGAAGACGACGACATAAGTGAATGGAACATACATGGAGAAATAATACCAATTAATTTCGATAAAGCATCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATCGACGAAGAAGAAGAAAGCGACGTTCCAACATGTCCCGAGTTACCAATGCCAGAATTCACAACATATGAAAACATGGACATAATAGTTGCAAAGTTACAAGTTCATCTTATTGTAGCAAATATGGTTGTGAAGAAAGGGAAGAAAAATTGGAAATGGAAGAGTAGAGTTGTGTTTTGGAGTAAGTGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTAAACATGAAGGTGATTGGTGGTTTTTTGAGGTTGATGTAAAGAGATTGGAGCAGAAAGTTTCTTTGCCTATTGGTTCGTGTAGTTTAGCTTTGCCTATATGGGAACAAGGGATAGACAAAATGGAACAAAATGTAAGAAGCAAAACAAGAGCAAAACATGAAGCCTATGCAACAGTCCTACACTCTTCAGAAAGATACGTTTGTGGAGCAATAACACTTGCACAAAGCCTATTAAAAACAGGAACCAAACGTGACCTTATACTTCTCATTGACAGCTCCATCTCCGTCCGCAAACGTCATGCCTTGGCGGACGCAGACTCCGATATCTTTGTGCTGAGGAATCTTGATATTCTCTTCAACTTTCCTCAAATGTCTGCTACTGGTAATGCTCGATCCATTTTCAACGCTGGGATGATGATTATCGAGCCCTCTAATTGCACCTTCAGTGTGCTGATGAACCTGCGCCACGACATTGTATCATACACCGGAGGTGACCAAGGATTCATGAACGAGATCTTTGTATGGTGGCATAGGCTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGACCAACACAACAGTAGAAGCAAGTGTGAAAAATGGATTATTTGGTTCTGACCCTCCAAAACTATATGCTATTCACTACCTTGGTTTGAAACCTTGGCATTGCTATAGAGACTATGATTGCAATTGGGATGTAGTGGATCAAAGGGTTTATGCTAGTGATGTGGCACACCAACGTTGGTGGAAATTTCATGATAGAATGGACAAGAAGTTACAAAGTTTTTGTAGGTTGACAAAAGAACGTAGGACTGAGTTAAATATGGAACGGAGAAGATCTAGTAAGATGGGATCACTTGATTATCATTGGAAGATTAATGTCACTGATCCTAGAAATTCTAACTCTCTTTTGATGGATTAA
Protein sequence

>Msa0102040

MDVSNLHKLVKTAPSKALIMRFNLLCLSIFLIVYATLLLRPSSSVYFDNAASLVRCSLRECHHKGENSIKIKAVLEELPKAKSRNPKKNGTKIEVPSEKIGKGMKIGTVNMDEDDDVSEWNIHGETIPINFDKVSQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFATYENMDIIVAKLQVHLIVANMVVKKGKNDWKWKSKVVFWSKCRPMLEIFRCDDLVKNEGDWWFYEVDVKKLEQKISLPVGSCNLALPLWEQGIDKVYDMSKMEQNVRSKTRAKHEAYATVLHSSESYVCGAITLAQSLLKTGTKPPSPSANAVHWQVPVGRFEPSPESETREQKMEHTMSIIIFRLWQLTDYEKIIFIDSDILVLRNLDILFNFPQMSATGNDQSIFNSGIMVIEPSNCTFSVLMSRRHDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTVEASVKNGLFSADPPKLYAIHYLDYDCNWDVVDQRVYGSDVAHQRWWNFHDRMDKKLQSFCRLTRQRRTELNWERRRSYKMGSLDYHWKINMDVSNVNKLVKRAPSKTLVVRFNLFCFAIFLIVYATLLLRLPSSVYFDSAASLVGCSLRECHHKGEKGIKMKAALEELPNQKSWRPKTNGTKIEVPSEIIGKEMKIGMVNMNEDDDISEWNIHGEIIPINFDKASQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFTTYENMDIIVAKLQVHLIVANMVVKKGKKNWKWKSRVVFWSKCRPMLEIFRCDDLVKHEGDWWFFEVDVKRLEQKVSLPIGSCSLALPIWEQGIDKMEQNVRSKTRAKHEAYATVLHSSERYVCGAITLAQSLLKTGTKRDLILLIDSSISVRKRHALADADSDIFVLRNLDILFNFPQMSATGNARSIFNAGMMIIEPSNCTFSVLMNLRHDIVSYTGGDQGFMNEIFVWWHRLPRRVNYLKNFWTNTTVEASVKNGLFGSDPPKLYAIHYLGLKPWHCYRDYDCNWDVVDQRVYASDVAHQRWWKFHDRMDKKLQSFCRLTKERRTELNMERRRSSKMGSLDYHWKINVTDPRNSNSLLMD*