Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004100 | sp|Q8GY84|RH10_ARATH | 42.191 | 429 | 191 | 13 | 1 | 379 | 8 | 429 | 4.71e-91 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004100 | Msa0102320 | 0.815840 | 7.523119e-52 | -8.615850e-47 |
| Msa0004100 | Msa0916350 | 0.830448 | 2.920430e-55 | -8.615850e-47 |
| Msa0004100 | Msa0993860 | 0.835238 | 1.885268e-56 | -8.615850e-47 |
| Msa0004100 | Msa0993870 | 0.845585 | 3.705623e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004100 | MtrunA17_Chr5g0429221 | 53.717 | 417 | 151 | 11 | 1 | 380 | 1 | 412 | 1.48e-133 | 388 |
| Msa0004100 | MtrunA17_Chr7g0236841 | 47.585 | 414 | 176 | 10 | 1 | 376 | 8 | 418 | 3.79e-102 | 309 |
| Msa0004100 | MtrunA17_Chr6g0483491 | 48.020 | 404 | 170 | 9 | 1 | 368 | 8 | 407 | 8.91e-102 | 308 |
| Msa0004100 | MtrunA17_Chr1g0155201 | 46.575 | 292 | 132 | 7 | 112 | 386 | 10 | 294 | 2.98e-70 | 224 |
| Msa0004100 | MtrunA17_Chr1g0155691 | 70.000 | 150 | 24 | 1 | 232 | 360 | 1 | 150 | 3.17e-59 | 191 |
| Msa0004100 | MtrunA17_Chr2g0310581 | 29.048 | 420 | 255 | 10 | 3 | 386 | 53 | 465 | 7.61e-40 | 148 |
| Msa0004100 | MtrunA17_Chr3g0098121 | 27.642 | 369 | 220 | 11 | 37 | 362 | 190 | 554 | 7.70e-27 | 112 |
| Msa0004100 | MtrunA17_Chr8g0349951 | 42.857 | 154 | 76 | 5 | 1 | 145 | 8 | 158 | 3.20e-26 | 103 |
| Msa0004100 | MtrunA17_Chr2g0307471 | 26.531 | 392 | 224 | 14 | 2 | 343 | 90 | 467 | 6.13e-26 | 109 |
| Msa0004100 | MtrunA17_Chr1g0149251 | 25.641 | 312 | 197 | 7 | 37 | 316 | 2 | 310 | 9.71e-26 | 106 |
| Msa0004100 | MtrunA17_Chr2g0300291 | 28.743 | 334 | 199 | 10 | 37 | 334 | 179 | 509 | 1.50e-25 | 108 |
| Msa0004100 | MtrunA17_Chr4g0003441 | 26.282 | 312 | 195 | 7 | 37 | 316 | 146 | 454 | 3.13e-25 | 107 |
| Msa0004100 | MtrunA17_Chr4g0040761 | 26.149 | 348 | 209 | 13 | 37 | 346 | 57 | 394 | 9.86e-22 | 97.4 |
| Msa0004100 | MtrunA17_Chr8g0347171 | 26.205 | 332 | 160 | 11 | 37 | 304 | 198 | 508 | 2.94e-21 | 95.9 |
| Msa0004100 | MtrunA17_Chr4g0062301 | 26.234 | 385 | 214 | 14 | 37 | 365 | 135 | 505 | 2.97e-21 | 95.5 |
| Msa0004100 | MtrunA17_Chr7g0247191 | 25.225 | 333 | 216 | 7 | 37 | 341 | 188 | 515 | 5.99e-21 | 94.4 |
| Msa0004100 | MtrunA17_Chr4g0076491 | 25.333 | 375 | 216 | 10 | 1 | 316 | 285 | 654 | 6.95e-21 | 94.7 |
| Msa0004100 | MtrunA17_Chr7g0271121 | 26.575 | 365 | 190 | 14 | 37 | 345 | 144 | 486 | 3.01e-20 | 92.8 |
| Msa0004100 | MtrunA17_Chr3g0095031 | 26.649 | 379 | 219 | 13 | 7 | 338 | 94 | 460 | 4.63e-20 | 92.0 |
| Msa0004100 | MtrunA17_Chr7g0247221 | 24.324 | 333 | 219 | 7 | 37 | 341 | 181 | 508 | 7.38e-20 | 91.3 |
| Msa0004100 | MtrunA17_Chr7g0247181 | 24.324 | 333 | 219 | 7 | 37 | 341 | 178 | 505 | 7.59e-20 | 91.3 |
| Msa0004100 | MtrunA17_Chr3g0107851 | 26.687 | 326 | 183 | 9 | 37 | 314 | 155 | 472 | 9.81e-20 | 90.9 |
| Msa0004100 | MtrunA17_Chr6g0449741 | 25.000 | 332 | 193 | 8 | 37 | 316 | 287 | 614 | 1.03e-19 | 91.3 |
| Msa0004100 | MtrunA17_Chr8g0347161 | 23.881 | 335 | 170 | 11 | 34 | 304 | 137 | 450 | 4.60e-19 | 89.0 |
| Msa0004100 | MtrunA17_Chr1g0193491 | 25.140 | 358 | 203 | 12 | 37 | 344 | 152 | 494 | 7.22e-19 | 88.6 |
| Msa0004100 | MtrunA17_Chr3g0114081 | 25.507 | 345 | 198 | 10 | 46 | 336 | 63 | 402 | 6.18e-18 | 85.5 |
| Msa0004100 | MtrunA17_Chr1g0155211 | 51.807 | 83 | 28 | 2 | 1 | 71 | 1 | 83 | 9.22e-18 | 77.8 |
| Msa0004100 | MtrunA17_Chr4g0039471 | 32.143 | 196 | 119 | 7 | 3 | 187 | 223 | 415 | 8.57e-16 | 78.6 |
| Msa0004100 | MtrunA17_Chr7g0236831 | 21.868 | 439 | 233 | 13 | 37 | 367 | 202 | 638 | 1.34e-15 | 78.6 |
| Msa0004100 | MtrunA17_Chr5g0443991 | 24.719 | 356 | 207 | 12 | 37 | 345 | 114 | 455 | 3.34e-15 | 77.4 |
| Msa0004100 | MtrunA17_Chr2g0277821 | 24.924 | 329 | 211 | 9 | 37 | 330 | 542 | 869 | 3.73e-15 | 77.4 |
| Msa0004100 | MtrunA17_Chr4g0034411 | 25.141 | 354 | 208 | 12 | 37 | 345 | 114 | 455 | 5.03e-14 | 73.9 |
| Msa0004100 | MtrunA17_Chr3g0121351 | 24.534 | 322 | 180 | 11 | 37 | 304 | 183 | 495 | 2.01e-13 | 71.6 |
| Msa0004100 | MtrunA17_Chr6g0449911 | 22.024 | 336 | 209 | 11 | 37 | 330 | 203 | 527 | 1.36e-12 | 69.3 |
| Msa0004100 | MtrunA17_Chr2g0293631 | 23.123 | 333 | 209 | 9 | 37 | 330 | 534 | 858 | 2.52e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004100 | AT5G60990.1 | 42.191 | 429 | 191 | 13 | 1 | 379 | 8 | 429 | 4.78e-92 | 284 |
| Msa0004100 | AT1G16280.1 | 31.129 | 363 | 217 | 8 | 37 | 367 | 97 | 458 | 6.09e-43 | 156 |
| Msa0004100 | AT5G65900.1 | 28.286 | 350 | 208 | 12 | 36 | 348 | 192 | 535 | 2.15e-26 | 111 |
| Msa0004100 | AT4G16630.1 | 27.937 | 383 | 232 | 14 | 3 | 345 | 168 | 546 | 3.29e-26 | 111 |
| Msa0004100 | AT3G18600.1 | 27.168 | 346 | 210 | 10 | 37 | 346 | 128 | 467 | 2.54e-25 | 108 |
| Msa0004100 | AT3G61240.2 | 24.629 | 337 | 222 | 8 | 37 | 345 | 163 | 495 | 1.58e-22 | 99.4 |
| Msa0004100 | AT3G61240.1 | 24.629 | 337 | 222 | 8 | 37 | 345 | 163 | 495 | 1.58e-22 | 99.4 |
| Msa0004100 | AT5G11170.2 | 25.321 | 312 | 198 | 8 | 37 | 316 | 2 | 310 | 1.98e-22 | 97.4 |
| Msa0004100 | AT5G11170.1 | 25.321 | 312 | 198 | 8 | 37 | 316 | 85 | 393 | 3.57e-22 | 97.8 |
| Msa0004100 | AT5G11200.1 | 25.321 | 312 | 198 | 8 | 37 | 316 | 85 | 393 | 3.57e-22 | 97.8 |
| Msa0004100 | AT3G22310.2 | 23.958 | 384 | 233 | 13 | 3 | 339 | 117 | 488 | 4.72e-21 | 95.5 |
| Msa0004100 | AT3G22310.1 | 23.958 | 384 | 233 | 13 | 3 | 339 | 117 | 488 | 4.84e-21 | 95.5 |
| Msa0004100 | AT4G00660.1 | 23.964 | 338 | 223 | 8 | 37 | 345 | 170 | 502 | 7.63e-21 | 94.4 |
| Msa0004100 | AT4G00660.2 | 23.964 | 338 | 223 | 8 | 37 | 345 | 170 | 502 | 7.63e-21 | 94.4 |
| Msa0004100 | AT2G45810.1 | 24.036 | 337 | 224 | 7 | 37 | 345 | 193 | 525 | 8.01e-21 | 94.7 |
| Msa0004100 | AT5G05450.1 | 25.217 | 345 | 196 | 11 | 46 | 336 | 64 | 400 | 4.22e-19 | 89.7 |
| Msa0004100 | AT4G15850.1 | 23.636 | 440 | 226 | 17 | 37 | 381 | 74 | 498 | 5.38e-19 | 89.0 |
| Msa0004100 | AT1G63250.1 | 25.872 | 344 | 198 | 12 | 46 | 340 | 376 | 711 | 7.22e-19 | 89.0 |
| Msa0004100 | AT5G26742.1 | 26.629 | 353 | 178 | 13 | 37 | 331 | 141 | 470 | 1.55e-18 | 88.2 |
| Msa0004100 | AT5G26742.2 | 26.629 | 353 | 178 | 13 | 37 | 331 | 141 | 470 | 1.56e-18 | 88.2 |
| Msa0004100 | AT5G26742.3 | 26.629 | 353 | 178 | 13 | 37 | 331 | 48 | 377 | 2.02e-18 | 87.4 |
| Msa0004100 | AT3G22330.1 | 22.135 | 384 | 240 | 13 | 3 | 339 | 105 | 476 | 2.34e-18 | 87.4 |
| Msa0004100 | AT3G09620.1 | 24.771 | 327 | 221 | 9 | 37 | 349 | 435 | 750 | 7.99e-18 | 85.9 |
| Msa0004100 | AT3G09620.2 | 24.771 | 327 | 221 | 9 | 37 | 349 | 436 | 751 | 8.52e-18 | 85.9 |
| Msa0004100 | AT5G54910.1 | 27.874 | 348 | 186 | 16 | 37 | 336 | 110 | 440 | 1.60e-17 | 85.1 |
| Msa0004100 | AT1G20920.4 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.6 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.3 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.7 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.5 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.1 | 25.000 | 348 | 223 | 10 | 37 | 349 | 568 | 912 | 2.44e-17 | 84.7 |
| Msa0004100 | AT1G20920.2 | 25.199 | 377 | 241 | 13 | 37 | 376 | 230 | 602 | 4.05e-17 | 84.0 |
| Msa0004100 | AT2G33730.1 | 25.464 | 377 | 213 | 12 | 1 | 316 | 312 | 681 | 4.12e-17 | 83.6 |
| Msa0004100 | AT1G71370.1 | 26.608 | 342 | 204 | 13 | 37 | 336 | 55 | 391 | 1.01e-16 | 82.4 |
| Msa0004100 | AT5G14610.7 | 22.647 | 340 | 208 | 11 | 34 | 330 | 66 | 393 | 6.11e-14 | 73.6 |
| Msa0004100 | AT5G14610.3 | 22.647 | 340 | 208 | 11 | 34 | 330 | 66 | 393 | 6.11e-14 | 73.6 |
| Msa0004100 | AT5G14610.5 | 22.647 | 340 | 208 | 11 | 34 | 330 | 205 | 532 | 7.05e-14 | 73.6 |
| Msa0004100 | AT5G14610.6 | 22.647 | 340 | 208 | 11 | 34 | 330 | 197 | 524 | 8.30e-14 | 73.6 |
| Msa0004100 | AT5G14610.2 | 22.647 | 340 | 208 | 11 | 34 | 330 | 197 | 524 | 8.93e-14 | 73.2 |
| Msa0004100 | AT5G14610.1 | 22.647 | 340 | 208 | 11 | 34 | 330 | 265 | 592 | 1.33e-13 | 72.8 |
| Msa0004100 | AT1G31970.1 | 24.545 | 330 | 190 | 14 | 37 | 317 | 153 | 472 | 2.75e-13 | 71.6 |
| Msa0004100 | AT3G06480.1 | 24.290 | 317 | 193 | 10 | 37 | 315 | 474 | 781 | 5.61e-12 | 68.2 |
| Msa0004100 | AT5G11200.2 | 30.323 | 155 | 98 | 5 | 37 | 184 | 85 | 236 | 4.48e-11 | 64.7 |
| Msa0004100 | AT5G11200.3 | 30.323 | 155 | 98 | 5 | 37 | 184 | 85 | 236 | 4.65e-11 | 64.7 |
Find 98 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCTAAGCATGTGTTTA+AGG | 0.171798 | 1_1:-6553697 | Msa0004100:CDS |
| TTCTTAAGAATCTTGGTTTC+AGG | 0.206964 | 1_1:-6553265 | Msa0004100:CDS |
| TGACTGATATAACTAATAAT+AGG | 0.219169 | 1_1:+6553237 | None:intergenic |
| GAGGCTCTAGGTTCTCAATT+TGG | 0.247496 | 1_1:-6554568 | Msa0004100:CDS |
| AATATGATAGAGAAGCTTCT+AGG | 0.276369 | 1_1:-6552823 | Msa0004100:intron |
| GCTTTGATTCTTAAGAATCT+TGG | 0.333972 | 1_1:-6553272 | Msa0004100:CDS |
| TTGAAATGTCTCCTTTCATC+TGG | 0.335756 | 1_1:+6552844 | None:intergenic |
| AATGAAATCATTTACTGATC+TGG | 0.339096 | 1_1:-6554987 | Msa0004100:CDS |
| ATGTGGTACAGCGCTTCTTC+TGG | 0.347836 | 1_1:-6553294 | Msa0004100:CDS |
| TGTGTCCGCAATAGAATATT+TGG | 0.348473 | 1_1:+6553563 | None:intergenic |
| GTGTAGGAAATGAAAGAATT+CGG | 0.357638 | 1_1:-6552278 | Msa0004100:intron |
| AACAAAAGCCACAGTCTTAC+CGG | 0.361264 | 1_1:+6554749 | None:intergenic |
| AACACATGCTTAGCATTGTA+TGG | 0.367564 | 1_1:+6553702 | None:intergenic |
| AATGAGTGGAAGAAAATATA+TGG | 0.389512 | 1_1:-6553330 | Msa0004100:CDS |
| TCAGACCGCTGACCACTTTG+AGG | 0.390680 | 1_1:-6554587 | Msa0004100:CDS |
| TTGTAGTGACTTTGTTAGTA+AGG | 0.398889 | 1_1:-6553063 | Msa0004100:intron |
| TCTTGCTAGTTTAAAGTACT+TGG | 0.402176 | 1_1:-6554189 | Msa0004100:intron |
| GGAATTTCCCCACCACGTTC+CGG | 0.403358 | 1_1:-6554768 | Msa0004100:CDS |
| ATGAAATCATTTACTGATCT+GGG | 0.404462 | 1_1:-6554986 | Msa0004100:CDS |
| AAAGTATGCGCGCATACGTC+AGG | 0.406866 | 1_1:+6552187 | None:intergenic |
| GCGCATACTTTGGTATTGAT+TGG | 0.409449 | 1_1:-6552175 | Msa0004100:three_prime_UTR |
| TCTGGGCTTATCTTCTGAAT+TGG | 0.411456 | 1_1:-6554969 | Msa0004100:CDS |
| CATTAAGGTTGTACCTTCAC+GGG | 0.419071 | 1_1:+6553671 | None:intergenic |
| GACTGATATAACTAATAATA+GGG | 0.421629 | 1_1:+6553238 | None:intergenic |
| AAAATCCTTGGGTGTGTGTT+AGG | 0.429832 | 1_1:+6554219 | None:intergenic |
| GCAGGAAACGATGATGTGTT+TGG | 0.436332 | 1_1:-6554789 | Msa0004100:intron |
| CAATAGAATATTTGGAAGAT+AGG | 0.440768 | 1_1:+6553571 | None:intergenic |
| CAAGAGCAAAAGAAAATCCT+TGG | 0.444551 | 1_1:+6554207 | None:intergenic |
| AGATATTCCAGCGGTAGATA+TGG | 0.449221 | 1_1:-6553036 | Msa0004100:CDS |
| AAAAGCAAAACTTCCTCAAA+TGG | 0.452304 | 1_1:+6552682 | None:intergenic |
| GAGGAGCGGAGGATACTTAG+AGG | 0.453592 | 1_1:-6552252 | Msa0004100:CDS |
| GGGGTTAGGCTCTGCAATAT+AGG | 0.458186 | 1_1:+6554723 | None:intergenic |
| TGATTAACTACGACATTCCT+TGG | 0.462912 | 1_1:-6553013 | Msa0004100:CDS |
| TTAACACTTACAATAATATG+AGG | 0.470966 | 1_1:+6554345 | None:intergenic |
| TGACGTATGCGCGCATACTT+TGG | 0.480207 | 1_1:-6552185 | Msa0004100:three_prime_UTR |
| ACATTAAGGTTGTACCTTCA+CGG | 0.481059 | 1_1:+6553670 | None:intergenic |
| ATTGTATCCTGCACCATTTG+AGG | 0.486127 | 1_1:-6552695 | Msa0004100:CDS |
| TATTATTAGTTATATCAGTC+AGG | 0.487974 | 1_1:-6553235 | Msa0004100:intron |
| TAGAGCACACAAGCAAAGAA+AGG | 0.502525 | 1_1:+6554702 | None:intergenic |
| AGGTGATATAAGATTAGGTC+AGG | 0.503170 | 1_1:+6554239 | None:intergenic |
| AGAGCACACAAGCAAAGAAA+GGG | 0.505838 | 1_1:+6554703 | None:intergenic |
| CCTTTGTGAGCCCAGATGAA+AGG | 0.506008 | 1_1:-6552855 | Msa0004100:CDS |
| GCTCTAGGTTCTCAATTTGG+TGG | 0.508954 | 1_1:-6554565 | Msa0004100:CDS |
| GTGTTAGGTGATATAAGATT+AGG | 0.513506 | 1_1:+6554234 | None:intergenic |
| TGTAGTGACTTTGTTAGTAA+GGG | 0.522265 | 1_1:-6553062 | Msa0004100:intron |
| CTTGTGTGCTCTATTCCACA+AGG | 0.529112 | 1_1:-6554692 | Msa0004100:intron |
| AGAAATGTTCTCCGCTCACT+AGG | 0.532344 | 1_1:+6554001 | None:intergenic |
| CGGAGGATACTTAGAGGAGG+AGG | 0.540049 | 1_1:-6552246 | Msa0004100:CDS |
| CACCACGCAGGAGCGAAGCT+AGG | 0.547017 | 1_1:-6552223 | Msa0004100:CDS |
| GAATGTTCTCATAAGATAGC+AGG | 0.549053 | 1_1:+6554056 | None:intergenic |
| ATTATATCTACCGCGTGGGA+TGG | 0.549999 | 1_1:-6552906 | Msa0004100:CDS |
| AAAACTTCCTCAAATGGTGC+AGG | 0.550172 | 1_1:+6552688 | None:intergenic |
| TGAAATGTCTCCTTTCATCT+GGG | 0.550468 | 1_1:+6552845 | None:intergenic |
| TCTTACTCTTCAAGGTTGGG+AGG | 0.551040 | 1_1:-6554262 | Msa0004100:intron |
| CAGTCTTACCGGAACGTGGT+GGG | 0.555663 | 1_1:+6554760 | None:intergenic |
| AGGAAATGAAAGAATTCGGT+TGG | 0.559186 | 1_1:-6552274 | Msa0004100:CDS |
| AAGAGCAAAAGAAAATCCTT+GGG | 0.564314 | 1_1:+6554208 | None:intergenic |
| AAATGAAAGAATTCGGTTGG+AGG | 0.566198 | 1_1:-6552271 | Msa0004100:CDS |
| AGTCTTACCGGAACGTGGTG+GGG | 0.570239 | 1_1:+6554761 | None:intergenic |
| CACAAGCAAAGAAAGGGGTT+AGG | 0.574470 | 1_1:+6554709 | None:intergenic |
| GCTGACCACTTTGAGGCTCT+AGG | 0.576835 | 1_1:-6554580 | Msa0004100:CDS |
| AAAGAATTCGGTTGGAGGAG+CGG | 0.578400 | 1_1:-6552266 | Msa0004100:CDS |
| TTAATCACCATATCTACCGC+TGG | 0.579180 | 1_1:+6553029 | None:intergenic |
| ATCTTCCAAATATTCTATTG+CGG | 0.580285 | 1_1:-6553568 | Msa0004100:CDS |
| GGATGGATTCATGTTCCTTG+CGG | 0.596960 | 1_1:+6554382 | None:intergenic |
| TCAAATGGTGCAGGATACAA+TGG | 0.597106 | 1_1:+6552697 | None:intergenic |
| AAAGTGGTCAGCGGTCTGAA+AGG | 0.598234 | 1_1:+6554591 | None:intergenic |
| CTTTATGCAAGAAAATCACA+AGG | 0.598482 | 1_1:-6553526 | Msa0004100:intron |
| TTTCAGCGAGAGTGTATACA+AGG | 0.601075 | 1_1:+6553351 | None:intergenic |
| GGCTGAAAGATTAGCACAAG+AGG | 0.602507 | 1_1:-6552641 | Msa0004100:intron |
| CAAGAATGATTCCTAGTGAG+CGG | 0.607443 | 1_1:-6554012 | Msa0004100:CDS |
| AAGTATGCGCGCATACGTCA+GGG | 0.609961 | 1_1:+6552188 | None:intergenic |
| AGGTTGCTCTGAGTTGAGGA+TGG | 0.613304 | 1_1:+6554365 | None:intergenic |
| CATCTTACGTTTGGATACCA+AGG | 0.615406 | 1_1:+6552996 | None:intergenic |
| TACACTCTCGCTGAAATGAG+TGG | 0.616270 | 1_1:-6553344 | Msa0004100:CDS |
| TTTGGAAGGGCGTGTTAGTG+AGG | 0.618670 | 1_1:-6552662 | Msa0004100:CDS |
| AACCTAGCTTCGCTCCTGCG+TGG | 0.625199 | 1_1:+6552221 | None:intergenic |
| TTCATCTACATTCACAGACG+AGG | 0.628178 | 1_1:-6553975 | Msa0004100:intron |
| GTGTTTAAGGAATCCCGTGA+AGG | 0.633554 | 1_1:-6553684 | Msa0004100:intron |
| TATGAGGTTGCTCTGAGTTG+AGG | 0.634527 | 1_1:+6554361 | None:intergenic |
| CCTTTCATCTGGGCTCACAA+AGG | 0.638109 | 1_1:+6552855 | None:intergenic |
| GAATTCGGTTGGAGGAGCGG+AGG | 0.647473 | 1_1:-6552263 | Msa0004100:CDS |
| CAGGATTATATCTACCGCGT+GGG | 0.649705 | 1_1:-6552910 | Msa0004100:CDS |
| ACAGTCTTACCGGAACGTGG+TGG | 0.656212 | 1_1:+6554759 | None:intergenic |
| GCCACAGTCTTACCGGAACG+TGG | 0.662479 | 1_1:+6554756 | None:intergenic |
| TAGAGCCTCAAAGTGGTCAG+CGG | 0.665980 | 1_1:+6554582 | None:intergenic |
| ACCACGTTCCGGTAAGACTG+TGG | 0.666901 | 1_1:-6554757 | Msa0004100:CDS |
| GAGAACCTAGAGCCTCAAAG+TGG | 0.679438 | 1_1:+6554575 | None:intergenic |
| GAGCACACAAGCAAAGAAAG+GGG | 0.686944 | 1_1:+6554704 | None:intergenic |
| TCTCTCTGCGCATAATACCA+AGG | 0.688032 | 1_1:+6554923 | None:intergenic |
| TAGAGGAGGAGGCACCACGC+AGG | 0.689900 | 1_1:-6552235 | Msa0004100:CDS |
| TATCACCTAACACACACCCA+AGG | 0.693371 | 1_1:-6554224 | Msa0004100:CDS |
| GATTGCTGAAGAGAACCGCA+AGG | 0.696368 | 1_1:-6554397 | Msa0004100:CDS |
| ACAGGATTATATCTACCGCG+TGG | 0.696590 | 1_1:-6552911 | Msa0004100:intron |
| GAGCGGAGGATACTTAGAGG+AGG | 0.701440 | 1_1:-6552249 | Msa0004100:CDS |
| ATGGTATACACTCAGCAATG+TGG | 0.716399 | 1_1:-6553311 | Msa0004100:CDS |
| TAAGGGACTAGATATTCCAG+CGG | 0.751272 | 1_1:-6553045 | Msa0004100:CDS |
| GAGCAACAGTCCATCCCACG+CGG | 0.775337 | 1_1:+6552896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTAATAATGTAAAAA+CGG | + | chr1_1:6552832-6552851 | None:intergenic | 10.0% |
| !!! | TTAACATAATAACTTTTTAT+AGG | - | chr1_1:6553832-6553851 | Msa0004100:intron | 10.0% |
| !!! | ATCATAAATATAAAAAGTTT+TGG | + | chr1_1:6554980-6554999 | None:intergenic | 10.0% |
| !! | TAGTTTAAGAAAAAAGAAAA+AGG | + | chr1_1:6552353-6552372 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTTTCTTAAACT+AGG | - | chr1_1:6552352-6552371 | Msa0004100:intron | 15.0% |
| !! | GATAATATTTGTAAACATTA+AGG | + | chr1_1:6553320-6553339 | None:intergenic | 15.0% |
| !! | AGAAATTACAATTATAATAC+AGG | + | chr1_1:6553780-6553799 | None:intergenic | 15.0% |
| !! | AAGTTATTATGTTAAGAATT+AGG | + | chr1_1:6553827-6553846 | None:intergenic | 15.0% |
| !!! | ATATAGAAAAGTTAAGTTTT+TGG | - | chr1_1:6554410-6554429 | Msa0004100:intron | 15.0% |
| !!! | TTGTCAGTTATTTTATTATT+TGG | - | chr1_1:6554870-6554889 | Msa0004100:intron | 15.0% |
| !!! | AAAATCTAAAACACATATTA+TGG | - | chr1_1:6554912-6554931 | Msa0004100:CDS | 15.0% |
| !!! | AAATCTAAAACACATATTAT+GGG | - | chr1_1:6554913-6554932 | Msa0004100:CDS | 15.0% |
| !! | CAAAAATTTGTGAAACAAAA+AGG | - | chr1_1:6552027-6552046 | Msa0004100:intron | 20.0% |
| !! | ATTGAATTATGCAATTTCAT+CGG | + | chr1_1:6552471-6552490 | None:intergenic | 20.0% |
| !! | TATAGAAAAAGCAATCAAAA+TGG | + | chr1_1:6552556-6552575 | None:intergenic | 20.0% |
| !! | TTAACACTTACAATAATATG+AGG | + | chr1_1:6552631-6552650 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCTTACTCTTCA+AGG | - | chr1_1:6552703-6552722 | Msa0004100:CDS | 20.0% |
| !! | AAACATTCCTATAAATGAAA+AGG | - | chr1_1:6553115-6553134 | Msa0004100:intron | 20.0% |
| !! | AACATTCCTATAAATGAAAA+GGG | - | chr1_1:6553116-6553135 | Msa0004100:intron | 20.0% |
| !!! | TTAAGAAATTCAACATTTTC+TGG | + | chr1_1:6553491-6553510 | None:intergenic | 20.0% |
| !! | GAATTTCTTAATATTAGAAG+AGG | - | chr1_1:6553500-6553519 | Msa0004100:intron | 20.0% |
| !! | GACTGATATAACTAATAATA+GGG | + | chr1_1:6553738-6553757 | None:intergenic | 20.0% |
| !! | TGACTGATATAACTAATAAT+AGG | + | chr1_1:6553739-6553758 | None:intergenic | 20.0% |
| !! | TATTATTAGTTATATCAGTC+AGG | - | chr1_1:6553738-6553757 | Msa0004100:intron | 20.0% |
| !!! | ACAAGTATTTTTTTTTTCTC+AGG | - | chr1_1:6554243-6554262 | Msa0004100:CDS | 20.0% |
| !!! | TGTTTGTATTTTATTTGTGT+AGG | - | chr1_1:6554679-6554698 | Msa0004100:intron | 20.0% |
| ! | ATGAAATCATTTACTGATCT+GGG | - | chr1_1:6551987-6552006 | Msa0004100:three_prime_UTR | 25.0% |
| ! | TAAATGATTATGATACCTTG+TGG | + | chr1_1:6552299-6552318 | None:intergenic | 25.0% |
| ! | TTGAATTATGCAATTTCATC+GGG | + | chr1_1:6552470-6552489 | None:intergenic | 25.0% |
| ! | CTTTGATCAAATAAACTTCT+AGG | - | chr1_1:6553027-6553046 | Msa0004100:CDS | 25.0% |
| ! | TGAAATGTAAAACTCAAAAG+TGG | + | chr1_1:6553096-6553115 | None:intergenic | 25.0% |
| ! | CAATAGAATATTTGGAAGAT+AGG | + | chr1_1:6553405-6553424 | None:intergenic | 25.0% |
| ! | ATCTTCCAAATATTCTATTG+CGG | - | chr1_1:6553405-6553424 | Msa0004100:intron | 25.0% |
| !!! | TAGAAGTTTTGTTTGATGTT+TGG | - | chr1_1:6553529-6553548 | Msa0004100:CDS | 25.0% |
| ! | AATGAGTGGAAGAAAATATA+TGG | - | chr1_1:6553643-6553662 | Msa0004100:intron | 25.0% |
| !! | TTTTTATAGGCAAAGAAACT+TGG | - | chr1_1:6553845-6553864 | Msa0004100:intron | 25.0% |
| !!! | TCTTTAAAATGGCAAAGTAA+AGG | + | chr1_1:6554196-6554215 | None:intergenic | 25.0% |
| !! | AAAGCGTCATAGTATATAAT+TGG | - | chr1_1:6554219-6554238 | Msa0004100:CDS | 25.0% |
| !! | ATTGAGCATAGTTATGTTTT+AGG | - | chr1_1:6554366-6554385 | Msa0004100:CDS | 25.0% |
| !! | CTTAACTTTTCTATATAGAC+AGG | + | chr1_1:6554406-6554425 | None:intergenic | 25.0% |
| !!! | AGTTAAGTTTTTGGATTTTG+TGG | - | chr1_1:6554419-6554438 | Msa0004100:intron | 25.0% |
| !! | TCTTATTATAAAAGCTTGCT+AGG | + | chr1_1:6554538-6554557 | None:intergenic | 25.0% |
| !! | TATGATGAGTGATTTGAAAT+TGG | - | chr1_1:6554607-6554626 | Msa0004100:intron | 25.0% |
| !!! | CAACATTTTGACTTTTAAAG+TGG | - | chr1_1:6554842-6554861 | Msa0004100:intron | 25.0% |
| ! | TAAAACACATATTATGGGTA+TGG | - | chr1_1:6554918-6554937 | Msa0004100:CDS | 25.0% |
| TATTTCTTACTCTTCAAGGT+TGG | - | chr1_1:6552707-6552726 | Msa0004100:CDS | 30.0% | |
| ATTTCTTACTCTTCAAGGTT+GGG | - | chr1_1:6552708-6552727 | Msa0004100:CDS | 30.0% | |
| GTGTTAGGTGATATAAGATT+AGG | + | chr1_1:6552742-6552761 | None:intergenic | 30.0% | |
| AAGAGCAAAAGAAAATCCTT+GGG | + | chr1_1:6552768-6552787 | None:intergenic | 30.0% | |
| ! | TCTTGCTAGTTTAAAGTACT+TGG | - | chr1_1:6552784-6552803 | Msa0004100:intron | 30.0% |
| ! | ATAAACTTCTAGGAACTTCT+TGG | - | chr1_1:6553037-6553056 | Msa0004100:CDS | 30.0% |
| ! | TAAACTTCTAGGAACTTCTT+GGG | - | chr1_1:6553038-6553057 | Msa0004100:CDS | 30.0% |
| CTTTATGCAAGAAAATCACA+AGG | - | chr1_1:6553447-6553466 | Msa0004100:intron | 30.0% | |
| ! | TTCAACATTTTCTGGACAAA+GGG | + | chr1_1:6553483-6553502 | None:intergenic | 30.0% |
| ! | ATTCAACATTTTCTGGACAA+AGG | + | chr1_1:6553484-6553503 | None:intergenic | 30.0% |
| GCTTTGATTCTTAAGAATCT+TGG | - | chr1_1:6553701-6553720 | Msa0004100:CDS | 30.0% | |
| TTCTTAAGAATCTTGGTTTC+AGG | - | chr1_1:6553708-6553727 | Msa0004100:intron | 30.0% | |
| GAATTAGGCATATTTCTTGT+TGG | + | chr1_1:6553812-6553831 | None:intergenic | 30.0% | |
| TTGTAGTGACTTTGTTAGTA+AGG | - | chr1_1:6553910-6553929 | Msa0004100:intron | 30.0% | |
| TGTAGTGACTTTGTTAGTAA+GGG | - | chr1_1:6553911-6553930 | Msa0004100:intron | 30.0% | |
| TATATAGCACATCTTACGTT+TGG | + | chr1_1:6553989-6554008 | None:intergenic | 30.0% | |
| AATATGATAGAGAAGCTTCT+AGG | - | chr1_1:6554150-6554169 | Msa0004100:intron | 30.0% | |
| !! | GACGCTTTTGTTCTTTAAAA+TGG | + | chr1_1:6554207-6554226 | None:intergenic | 30.0% |
| AAAAGCAAAACTTCCTCAAA+TGG | + | chr1_1:6554294-6554313 | None:intergenic | 30.0% | |
| ! | ATTTGAGGAAGTTTTGCTTT+TGG | - | chr1_1:6554293-6554312 | Msa0004100:intron | 30.0% |
| GCTATCAATGAAGACAAATT+GGG | + | chr1_1:6554462-6554481 | None:intergenic | 30.0% | |
| TGCTATCAATGAAGACAAAT+TGG | + | chr1_1:6554463-6554482 | None:intergenic | 30.0% | |
| ! | TTTGTCTTCATTGATAGCAA+AGG | - | chr1_1:6554464-6554483 | Msa0004100:intron | 30.0% |
| GTGTAGGAAATGAAAGAATT+CGG | - | chr1_1:6554695-6554714 | Msa0004100:CDS | 30.0% | |
| TTTGTGAAACAAAAAGGCCT+TGG | - | chr1_1:6552033-6552052 | Msa0004100:intron | 35.0% | |
| ATAGATACCTTGTAGTGCAT+GGG | + | chr1_1:6552097-6552116 | None:intergenic | 35.0% | |
| AGGTGATATAAGATTAGGTC+AGG | + | chr1_1:6552737-6552756 | None:intergenic | 35.0% | |
| CAAGAGCAAAAGAAAATCCT+TGG | + | chr1_1:6552769-6552788 | None:intergenic | 35.0% | |
| GAATGTTCTCATAAGATAGC+AGG | + | chr1_1:6552920-6552939 | None:intergenic | 35.0% | |
| CCTATAAATGAAAAGGGACT+CGG | - | chr1_1:6553122-6553141 | Msa0004100:intron | 35.0% | |
| ! | TGATCTCGAATTTTACTGCA+GGG | + | chr1_1:6553151-6553170 | None:intergenic | 35.0% |
| CAGTAAAATTCGAGATCAGA+CGG | - | chr1_1:6553153-6553172 | Msa0004100:intron | 35.0% | |
| AATTCCACTCTTGTGATTTC+AGG | - | chr1_1:6553247-6553266 | Msa0004100:CDS | 35.0% | |
| AACACATGCTTAGCATTGTA+TGG | + | chr1_1:6553274-6553293 | None:intergenic | 35.0% | |
| CAATGCTAAGCATGTGTTTA+AGG | - | chr1_1:6553276-6553295 | Msa0004100:CDS | 35.0% | |
| ACATTAAGGTTGTACCTTCA+CGG | + | chr1_1:6553306-6553325 | None:intergenic | 35.0% | |
| ACATGAGTCTAGCAATAGAT+TGG | + | chr1_1:6553345-6553364 | None:intergenic | 35.0% | |
| TGTGTCCGCAATAGAATATT+TGG | + | chr1_1:6553413-6553432 | None:intergenic | 35.0% | |
| TGATTAACTACGACATTCCT+TGG | - | chr1_1:6553960-6553979 | Msa0004100:intron | 35.0% | |
| ATATAATCCTGTTGATCACG+CGG | + | chr1_1:6554054-6554073 | None:intergenic | 35.0% | |
| TGAAATGTCTCCTTTCATCT+GGG | + | chr1_1:6554131-6554150 | None:intergenic | 35.0% | |
| TTGAAATGTCTCCTTTCATC+TGG | + | chr1_1:6554132-6554151 | None:intergenic | 35.0% | |
| !! | AGGAAGTTTTGCTTTTGGAA+GGG | - | chr1_1:6554298-6554317 | Msa0004100:intron | 35.0% |
| ! | TTTGTGGCAAGTTGAAATTG+TGG | - | chr1_1:6554435-6554454 | Msa0004100:intron | 35.0% |
| ! | TCTTCATTGATAGCAAAGGA+GGG | - | chr1_1:6554468-6554487 | Msa0004100:intron | 35.0% |
| AGGAAATGAAAGAATTCGGT+TGG | - | chr1_1:6554699-6554718 | Msa0004100:CDS | 35.0% | |
| AAATGAAAGAATTCGGTTGG+AGG | - | chr1_1:6554702-6554721 | Msa0004100:CDS | 35.0% | |
| TCTGGGCTTATCTTCTGAAT+TGG | - | chr1_1:6552004-6552023 | Msa0004100:intron | 40.0% | |
| TAGATACCTTGTAGTGCATG+GGG | + | chr1_1:6552096-6552115 | None:intergenic | 40.0% | |
| GATAGATACCTTGTAGTGCA+TGG | + | chr1_1:6552098-6552117 | None:intergenic | 40.0% | |
| ATTCATCTCATTCTGCATGC+AGG | - | chr1_1:6552166-6552185 | Msa0004100:three_prime_UTR | 40.0% | |
| AACAAAAGCCACAGTCTTAC+CGG | + | chr1_1:6552227-6552246 | None:intergenic | 40.0% | |
| AGAGCACACAAGCAAAGAAA+GGG | + | chr1_1:6552273-6552292 | None:intergenic | 40.0% | |
| TAGAGCACACAAGCAAAGAA+AGG | + | chr1_1:6552274-6552293 | None:intergenic | 40.0% | |
| GTAACCAACCAGCACATATA+TGG | + | chr1_1:6552524-6552543 | None:intergenic | 40.0% | |
| AAAATCCTTGGGTGTGTGTT+AGG | + | chr1_1:6552757-6552776 | None:intergenic | 40.0% | |
| CAAGAATGATTCCTAGTGAG+CGG | - | chr1_1:6552961-6552980 | Msa0004100:intron | 40.0% | |
| TTCATCTACATTCACAGACG+AGG | - | chr1_1:6552998-6553017 | Msa0004100:intron | 40.0% | |
| ! | CCGAGTCCCTTTTCATTTAT+AGG | + | chr1_1:6553125-6553144 | None:intergenic | 40.0% |
| ! | CTGATCTCGAATTTTACTGC+AGG | + | chr1_1:6553152-6553171 | None:intergenic | 40.0% |
| CATTAAGGTTGTACCTTCAC+GGG | + | chr1_1:6553305-6553324 | None:intergenic | 40.0% | |
| CATCAATTCCATGCTTGCAT+AGG | - | chr1_1:6553592-6553611 | Msa0004100:intron | 40.0% | |
| GTAACAATCCTATGCAAGCA+TGG | + | chr1_1:6553603-6553622 | None:intergenic | 40.0% | |
| ! | TTTCAGCGAGAGTGTATACA+AGG | + | chr1_1:6553625-6553644 | None:intergenic | 40.0% |
| ATGGTATACACTCAGCAATG+TGG | - | chr1_1:6553662-6553681 | Msa0004100:intron | 40.0% | |
| TCCTTGAATGCGTTCAAATC+TGG | - | chr1_1:6553869-6553888 | Msa0004100:intron | 40.0% | |
| CCTTGAATGCGTTCAAATCT+GGG | - | chr1_1:6553870-6553889 | Msa0004100:intron | 40.0% | |
| CTTGAATGCGTTCAAATCTG+GGG | - | chr1_1:6553871-6553890 | Msa0004100:intron | 40.0% | |
| TAAGGGACTAGATATTCCAG+CGG | - | chr1_1:6553928-6553947 | Msa0004100:intron | 40.0% | |
| AGATATTCCAGCGGTAGATA+TGG | - | chr1_1:6553937-6553956 | Msa0004100:intron | 40.0% | |
| TTAATCACCATATCTACCGC+TGG | + | chr1_1:6553947-6553966 | None:intergenic | 40.0% | |
| CATCTTACGTTTGGATACCA+AGG | + | chr1_1:6553980-6553999 | None:intergenic | 40.0% | |
| GATAGAGAAGCTTCTAGGTT+AGG | - | chr1_1:6554155-6554174 | Msa0004100:intron | 40.0% | |
| TCAAATGGTGCAGGATACAA+TGG | + | chr1_1:6554279-6554298 | None:intergenic | 40.0% | |
| ATTGTATCCTGCACCATTTG+AGG | - | chr1_1:6554278-6554297 | Msa0004100:intron | 40.0% | |
| AAAACTTCCTCAAATGGTGC+AGG | + | chr1_1:6554288-6554307 | None:intergenic | 40.0% | |
| !! | GAGGAAGTTTTGCTTTTGGA+AGG | - | chr1_1:6554297-6554316 | Msa0004100:intron | 40.0% |
| ! | GTCTTCATTGATAGCAAAGG+AGG | - | chr1_1:6554467-6554486 | Msa0004100:intron | 40.0% |
| !! | GCGCATACTTTGGTATTGAT+TGG | - | chr1_1:6554798-6554817 | Msa0004100:intron | 40.0% |
| TCTCTCTGCGCATAATACCA+AGG | + | chr1_1:6552053-6552072 | None:intergenic | 45.0% | |
| GCAGGAAACGATGATGTGTT+TGG | - | chr1_1:6552184-6552203 | Msa0004100:three_prime_UTR | 45.0% | |
| CACAAGCAAAGAAAGGGGTT+AGG | + | chr1_1:6552267-6552286 | None:intergenic | 45.0% | |
| GAGCACACAAGCAAAGAAAG+GGG | + | chr1_1:6552272-6552291 | None:intergenic | 45.0% | |
| CTTGTGTGCTCTATTCCACA+AGG | - | chr1_1:6552281-6552300 | Msa0004100:intron | 45.0% | |
| !! | GAGGCTCTAGGTTCTCAATT+TGG | - | chr1_1:6552405-6552424 | Msa0004100:intron | 45.0% |
| ! | GCTCTAGGTTCTCAATTTGG+TGG | - | chr1_1:6552408-6552427 | Msa0004100:intron | 45.0% |
| GCAAGAGACCATATATGTGC+TGG | - | chr1_1:6552513-6552532 | Msa0004100:intron | 45.0% | |
| ! | GAGACCATATATGTGCTGGT+TGG | - | chr1_1:6552517-6552536 | Msa0004100:intron | 45.0% |
| ! | GGATGGATTCATGTTCCTTG+CGG | + | chr1_1:6552594-6552613 | None:intergenic | 45.0% |
| ! | TATGAGGTTGCTCTGAGTTG+AGG | + | chr1_1:6552615-6552634 | None:intergenic | 45.0% |
| TCTTACTCTTCAAGGTTGGG+AGG | - | chr1_1:6552711-6552730 | Msa0004100:CDS | 45.0% | |
| TATCACCTAACACACACCCA+AGG | - | chr1_1:6552749-6552768 | Msa0004100:intron | 45.0% | |
| AGAAATGTTCTCCGCTCACT+AGG | + | chr1_1:6552975-6552994 | None:intergenic | 45.0% | |
| TGGACCTGAAATCACAAGAG+TGG | + | chr1_1:6553254-6553273 | None:intergenic | 45.0% | |
| GTGTTTAAGGAATCCCGTGA+AGG | - | chr1_1:6553289-6553308 | Msa0004100:CDS | 45.0% | |
| TACACTCTCGCTGAAATGAG+TGG | - | chr1_1:6553629-6553648 | Msa0004100:intron | 45.0% | |
| CCCAGATTTGAACGCATTCA+AGG | + | chr1_1:6553873-6553892 | None:intergenic | 45.0% | |
| ACAGGATTATATCTACCGCG+TGG | - | chr1_1:6554062-6554081 | Msa0004100:CDS | 45.0% | |
| CAGGATTATATCTACCGCGT+GGG | - | chr1_1:6554063-6554082 | Msa0004100:CDS | 45.0% | |
| ATTATATCTACCGCGTGGGA+TGG | - | chr1_1:6554067-6554086 | Msa0004100:CDS | 45.0% | |
| GGCTGAAAGATTAGCACAAG+AGG | - | chr1_1:6554332-6554351 | Msa0004100:intron | 45.0% | |
| TAGCAAAGGAGGGAAAAGCT+TGG | - | chr1_1:6554478-6554497 | Msa0004100:intron | 45.0% | |
| AGCAAAGGAGGGAAAAGCTT+GGG | - | chr1_1:6554479-6554498 | Msa0004100:intron | 45.0% | |
| CTTGGGGTGAATGGTGATTA+GGG | - | chr1_1:6554496-6554515 | Msa0004100:intron | 45.0% | |
| AAAGAATTCGGTTGGAGGAG+CGG | - | chr1_1:6554707-6554726 | Msa0004100:CDS | 45.0% | |
| AATTGTAGTAGCAGCCCTGT+AGG | + | chr1_1:6554951-6554970 | None:intergenic | 45.0% | |
| GTGATTCCCCATGCACTACA+AGG | - | chr1_1:6552087-6552106 | Msa0004100:three_prime_UTR | 50.0% | |
| GGGGTTAGGCTCTGCAATAT+AGG | + | chr1_1:6552253-6552272 | None:intergenic | 50.0% | |
| AAAGTGGTCAGCGGTCTGAA+AGG | + | chr1_1:6552385-6552404 | None:intergenic | 50.0% | |
| TAGAGCCTCAAAGTGGTCAG+CGG | + | chr1_1:6552394-6552413 | None:intergenic | 50.0% | |
| GAGAACCTAGAGCCTCAAAG+TGG | + | chr1_1:6552401-6552420 | None:intergenic | 50.0% | |
| GATTGCTGAAGAGAACCGCA+AGG | - | chr1_1:6552576-6552595 | Msa0004100:intron | 50.0% | |
| ! | AGGTTGCTCTGAGTTGAGGA+TGG | + | chr1_1:6552611-6552630 | None:intergenic | 50.0% |
| ! | CCACTGCTCTGCATTTTGAG+CGG | - | chr1_1:6552873-6552892 | Msa0004100:CDS | 50.0% |
| ! | CACTGCTCTGCATTTTGAGC+GGG | - | chr1_1:6552874-6552893 | Msa0004100:CDS | 50.0% |
| ATGTGGTACAGCGCTTCTTC+TGG | - | chr1_1:6553679-6553698 | Msa0004100:intron | 50.0% | |
| CAGTCAGGTAACTGTACGAC+AGG | - | chr1_1:6553753-6553772 | Msa0004100:intron | 50.0% | |
| CCTTTCATCTGGGCTCACAA+AGG | + | chr1_1:6554121-6554140 | None:intergenic | 50.0% | |
| CCTTTGTGAGCCCAGATGAA+AGG | - | chr1_1:6554118-6554137 | Msa0004100:intron | 50.0% | |
| ! | TTTGGAAGGGCGTGTTAGTG+AGG | - | chr1_1:6554311-6554330 | Msa0004100:intron | 50.0% |
| GCAAAGGAGGGAAAAGCTTG+GGG | - | chr1_1:6554480-6554499 | Msa0004100:intron | 50.0% | |
| AGGGAAAAGCTTGGGGTGAA+TGG | - | chr1_1:6554487-6554506 | Msa0004100:intron | 50.0% | |
| GCTTGGGGTGAATGGTGATT+AGG | - | chr1_1:6554495-6554514 | Msa0004100:intron | 50.0% | |
| AAGTATGCGCGCATACGTCA+GGG | + | chr1_1:6554788-6554807 | None:intergenic | 50.0% | |
| AAAGTATGCGCGCATACGTC+AGG | + | chr1_1:6554789-6554808 | None:intergenic | 50.0% | |
| TGACGTATGCGCGCATACTT+TGG | - | chr1_1:6554788-6554807 | Msa0004100:CDS | 50.0% | |
| GGTATGGACCTCATCCTACA+GGG | - | chr1_1:6554934-6554953 | Msa0004100:CDS | 50.0% | |
| GGAATTTCCCCACCACGTTC+CGG | - | chr1_1:6552205-6552224 | Msa0004100:exon | 55.0% | |
| AGTCTTACCGGAACGTGGTG+GGG | + | chr1_1:6552215-6552234 | None:intergenic | 55.0% | |
| CAGTCTTACCGGAACGTGGT+GGG | + | chr1_1:6552216-6552235 | None:intergenic | 55.0% | |
| ACAGTCTTACCGGAACGTGG+TGG | + | chr1_1:6552217-6552236 | None:intergenic | 55.0% | |
| ACCACGTTCCGGTAAGACTG+TGG | - | chr1_1:6552216-6552235 | Msa0004100:CDS | 55.0% | |
| TCAGACCGCTGACCACTTTG+AGG | - | chr1_1:6552386-6552405 | Msa0004100:intron | 55.0% | |
| !! | GCTGACCACTTTGAGGCTCT+AGG | - | chr1_1:6552393-6552412 | Msa0004100:intron | 55.0% |
| CCGCTCAAAATGCAGAGCAG+TGG | + | chr1_1:6552876-6552895 | None:intergenic | 55.0% | |
| CTCATGACCGCGTGATCAAC+AGG | - | chr1_1:6554044-6554063 | Msa0004100:CDS | 55.0% | |
| GAGGAGCGGAGGATACTTAG+AGG | - | chr1_1:6554721-6554740 | Msa0004100:CDS | 55.0% | |
| GAGCGGAGGATACTTAGAGG+AGG | - | chr1_1:6554724-6554743 | Msa0004100:CDS | 55.0% | |
| CGGAGGATACTTAGAGGAGG+AGG | - | chr1_1:6554727-6554746 | Msa0004100:CDS | 55.0% | |
| GGGTATGGACCTCATCCTAC+AGG | - | chr1_1:6554933-6554952 | Msa0004100:CDS | 55.0% | |
| AGTAGCAGCCCTGTAGGATG+AGG | + | chr1_1:6554945-6554964 | None:intergenic | 55.0% | |
| GCCACAGTCTTACCGGAACG+TGG | + | chr1_1:6552220-6552239 | None:intergenic | 60.0% | |
| GAGCAACAGTCCATCCCACG+CGG | + | chr1_1:6554080-6554099 | None:intergenic | 60.0% | |
| GAATTCGGTTGGAGGAGCGG+AGG | - | chr1_1:6554710-6554729 | Msa0004100:CDS | 60.0% | |
| AACCTAGCTTCGCTCCTGCG+TGG | + | chr1_1:6554755-6554774 | None:intergenic | 60.0% | |
| !! | TAGAGGAGGAGGCACCACGC+AGG | - | chr1_1:6554738-6554757 | Msa0004100:CDS | 65.0% |
| CACCACGCAGGAGCGAAGCT+AGG | - | chr1_1:6554750-6554769 | Msa0004100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6551987 | 6555008 | 6551987 | ID=Msa0004100;Name=Msa0004100 |
| chr1_1 | mRNA | 6551987 | 6555008 | 6551987 | ID=Msa0004100-mRNA-1;Parent=Msa0004100;Name=Msa0004100-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0.61|0.64|1|0.92|0.85|14|167|386 |
| chr1_1 | exon | 6551987 | 6552014 | 6551987 | ID=Msa0004100-mRNA-1:exon:2232;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6552075 | 6552294 | 6552075 | ID=Msa0004100-mRNA-1:exon:2231;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6552642 | 6552730 | 6552642 | ID=Msa0004100-mRNA-1:exon:2230;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6552824 | 6552929 | 6552824 | ID=Msa0004100-mRNA-1:exon:2229;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6553004 | 6553079 | 6553004 | ID=Msa0004100-mRNA-1:exon:2228;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6553236 | 6553381 | 6553236 | ID=Msa0004100-mRNA-1:exon:2227;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6553527 | 6553598 | 6553527 | ID=Msa0004100-mRNA-1:exon:2226;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6553685 | 6553726 | 6553685 | ID=Msa0004100-mRNA-1:exon:2225;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6553976 | 6554092 | 6553976 | ID=Msa0004100-mRNA-1:exon:2224;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6554190 | 6554270 | 6554190 | ID=Msa0004100-mRNA-1:exon:2223;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6554356 | 6554418 | 6554356 | ID=Msa0004100-mRNA-1:exon:2222;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6554549 | 6554621 | 6554549 | ID=Msa0004100-mRNA-1:exon:2221;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6554693 | 6554807 | 6554693 | ID=Msa0004100-mRNA-1:exon:2220;Parent=Msa0004100-mRNA-1 |
| chr1_1 | exon | 6554909 | 6555008 | 6554909 | ID=Msa0004100-mRNA-1:exon:2219;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6554909 | 6555008 | 6554909 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6554693 | 6554807 | 6554693 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6554549 | 6554621 | 6554549 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6554356 | 6554418 | 6554356 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6554190 | 6554270 | 6554190 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6553976 | 6554092 | 6553976 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6553685 | 6553726 | 6553685 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6553527 | 6553598 | 6553527 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6553236 | 6553381 | 6553236 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6553004 | 6553079 | 6553004 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6552824 | 6552929 | 6552824 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6552642 | 6552730 | 6552642 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | CDS | 6552214 | 6552294 | 6552214 | ID=Msa0004100-mRNA-1:cds;Parent=Msa0004100-mRNA-1 |
| chr1_1 | three_prime_UTR | 6552075 | 6552213 | 6552075 | ID=Msa0004100-mRNA-1:three_prime_utr;Parent=Msa0004100-mRNA-1 |
| chr1_1 | three_prime_UTR | 6551987 | 6552014 | 6551987 | ID=Msa0004100-mRNA-1:three_prime_utr;Parent=Msa0004100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
