Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103470 | sp|Q68EH9|CRBN_DANRE | 36.744 | 215 | 135 | 1 | 335 | 548 | 193 | 407 | 1.47e-40 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103470 | G7I262 | 96.953 | 558 | 15 | 1 | 1 | 558 | 1 | 556 | 0.0 | 1121 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103470 | Msa0171850 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0103470 | Msa0626940 | 0.815541 | 8.768380e-52 | -8.615850e-47 |
| Msa0103470 | Msa0659990 | 0.810505 | 1.115092e-50 | -8.615850e-47 |
| Msa0103470 | Msa1068390 | 0.803490 | 3.400391e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103470 | MtrunA17_Chr1g0146311 | 96.953 | 558 | 15 | 1 | 1 | 558 | 1 | 556 | 0.0 | 1121 |
| Msa0103470 | MtrunA17_Chr3g0140511 | 63.051 | 544 | 160 | 9 | 18 | 556 | 19 | 526 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103470 | AT2G25740.1 | 55.814 | 559 | 227 | 6 | 3 | 556 | 2 | 545 | 0.0 | 576 |
| Msa0103470 | AT2G25740.2 | 57.906 | 487 | 192 | 5 | 75 | 556 | 2 | 480 | 0.0 | 553 |
Find 141 sgRNAs with CRISPR-Local
Find 485 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCACTTTCCTCGTTTA+AGG | 0.119107 | 1_3:-10637466 | None:intergenic |
| AACTGAAACCTAAGTCATTT+TGG | 0.130038 | 1_3:+10640528 | Msa0103470:CDS |
| TCAGGAGTTGTGCTCTTTCC+TGG | 0.184844 | 1_3:+10635924 | Msa0103470:intron |
| TTGATTCAAGTTTAGGGTTT+TGG | 0.191814 | 1_3:-10633674 | None:intergenic |
| TACAAAATATAGTTGGTTTC+CGG | 0.206516 | 1_3:+10639868 | Msa0103470:CDS |
| ATCTACAAGGCAGGAGCTTT+TGG | 0.232171 | 1_3:+10639384 | Msa0103470:CDS |
| CCTTCAAAGTATTCTGTTGA+TGG | 0.250991 | 1_3:+10637435 | Msa0103470:CDS |
| CCATCAGAGAAGGGCTTAAT+TGG | 0.255033 | 1_3:+10637739 | Msa0103470:CDS |
| CTCAACAGCAGCCACAAAAT+TGG | 0.255978 | 1_3:-10635976 | None:intergenic |
| TTATTTGGAGGTGTTATATT+TGG | 0.276236 | 1_3:+10640786 | Msa0103470:intron |
| TGGGATGTTTCTTAGCCTTA+TGG | 0.277487 | 1_3:+10637306 | Msa0103470:intron |
| ATAGGGAGCTGTTCCTCTTC+TGG | 0.290687 | 1_3:+10637705 | Msa0103470:CDS |
| AGCATCCTTACATACATATC+TGG | 0.290747 | 1_3:+10635086 | Msa0103470:CDS |
| GCAAATGGATTAGCTCTAAC+TGG | 0.318248 | 1_3:+10639836 | Msa0103470:CDS |
| TGGTCCCCATGATTGGAATA+TGG | 0.321879 | 1_3:-10641164 | None:intergenic |
| TTCATGCTGCAATATGAATA+TGG | 0.324531 | 1_3:-10640631 | None:intergenic |
| GCTGGAGAATTTGCTCGATT+TGG | 0.331253 | 1_3:-10633758 | None:intergenic |
| CGAACTCCAAGGGATGCTTT+TGG | 0.340355 | 1_3:+10637363 | Msa0103470:CDS |
| CAGGAGTTGTGCTCTTTCCT+GGG | 0.344746 | 1_3:+10635925 | Msa0103470:intron |
| TATTTGGAGGTGTTATATTT+GGG | 0.344945 | 1_3:+10640787 | Msa0103470:intron |
| ACAAAATATAGTTGGTTTCC+GGG | 0.353288 | 1_3:+10639869 | Msa0103470:CDS |
| AGGTGTTATATTTGGGTGTT+GGG | 0.362242 | 1_3:+10640794 | Msa0103470:intron |
| CCAGACGATGGCAAAATCTA+AGG | 0.372271 | 1_3:+10640717 | Msa0103470:three_prime_UTR |
| CTCCTATTTGCTTGCACAAA+GGG | 0.372296 | 1_3:+10637842 | Msa0103470:CDS |
| AAGAGCATTCTTGCCTGGTT+GGG | 0.374410 | 1_3:+10637803 | Msa0103470:CDS |
| GAAAATCTGGATTCTAGAAT+AGG | 0.375236 | 1_3:+10637687 | Msa0103470:CDS |
| TTGCAGTACTAGTGAACATT+TGG | 0.386437 | 1_3:+10640604 | Msa0103470:three_prime_UTR |
| GGTGTCTGGTGTATTTAGAT+TGG | 0.391654 | 1_3:-10637628 | None:intergenic |
| TGCCTTGTAGATTCAGAAAC+AGG | 0.392651 | 1_3:-10639373 | None:intergenic |
| TAATACAATAGTCCTGGTTA+TGG | 0.393385 | 1_3:+10635018 | Msa0103470:intron |
| GAGGTGTTATATTTGGGTGT+TGG | 0.394268 | 1_3:+10640793 | Msa0103470:intron |
| GCATTTACATACGCACCAAC+AGG | 0.399570 | 1_3:-10639776 | None:intergenic |
| CGTATACCCCAAAATGACTT+AGG | 0.415553 | 1_3:-10640536 | None:intergenic |
| GTCAGGTAGCAATGGTGTTA+AGG | 0.425291 | 1_3:-10637649 | None:intergenic |
| GGATGAAAACCGCAAGCATT+GGG | 0.425357 | 1_3:+10636180 | Msa0103470:CDS |
| GTTGCAAGGAAGATTACTTA+AGG | 0.430591 | 1_3:-10637397 | None:intergenic |
| TGATTCATCATATTCAAAAC+TGG | 0.431365 | 1_3:-10637553 | None:intergenic |
| AAAATCTGGATTCTAGAATA+GGG | 0.431861 | 1_3:+10637688 | Msa0103470:CDS |
| ACGACTTTGTACAAGGCAAA+TGG | 0.435116 | 1_3:+10639821 | Msa0103470:CDS |
| CAGCACTTACAAAATATAGT+TGG | 0.442633 | 1_3:+10639861 | Msa0103470:CDS |
| TACAAATGTAAGGACTAGAT+TGG | 0.443812 | 1_3:+10640751 | Msa0103470:three_prime_UTR |
| TGGCACCGCAGGCGTCGTCC+CGG | 0.453194 | 1_3:+10635038 | Msa0103470:CDS |
| TTCACTCCTATTAAGAAGGC+AGG | 0.455754 | 1_3:+10641069 | Msa0103470:three_prime_UTR |
| AGCCCTTTGTGCAAGCAAAT+AGG | 0.456513 | 1_3:-10637844 | None:intergenic |
| CCATCAACAGAATACTTTGA+AGG | 0.459522 | 1_3:-10637435 | None:intergenic |
| ATAGAAAATGATAAAACATC+AGG | 0.465475 | 1_3:-10639337 | None:intergenic |
| AAAGTATTCTGTTGATGGAC+AGG | 0.466460 | 1_3:+10637440 | Msa0103470:CDS |
| TTGCTTGCACAAAGGGCTGC+AGG | 0.469589 | 1_3:+10637849 | Msa0103470:CDS |
| TTGCAAGGAAGATTACTTAA+GGG | 0.474428 | 1_3:-10637396 | None:intergenic |
| CAAGAGCATTCTTGCCTGGT+TGG | 0.476744 | 1_3:+10637802 | Msa0103470:CDS |
| CCAATTAAGCCCTTCTCTGA+TGG | 0.476760 | 1_3:-10637739 | None:intergenic |
| AGCAATGGTGTTAAGGTGTC+TGG | 0.483283 | 1_3:-10637642 | None:intergenic |
| TGCCACATGTGAAACCCATA+TGG | 0.487704 | 1_3:+10640478 | Msa0103470:CDS |
| TTGCGGTATCGCTGAAAACT+CGG | 0.488849 | 1_3:-10636151 | None:intergenic |
| ATTTCAAGAGCATTCTTGCC+TGG | 0.489166 | 1_3:+10637798 | Msa0103470:CDS |
| ACAAATGTAAGGACTAGATT+GGG | 0.493278 | 1_3:+10640752 | Msa0103470:three_prime_UTR |
| CCTACCACGCCAATGGTGTA+AGG | 0.498310 | 1_3:-10636023 | None:intergenic |
| GAAATTCTATGTGAGGAGTA+GGG | 0.499323 | 1_3:-10637780 | None:intergenic |
| TGAAATTCTATGTGAGGAGT+AGG | 0.500143 | 1_3:-10637781 | None:intergenic |
| TGGAGAGATCCAAATTATTG+AGG | 0.501224 | 1_3:+10637326 | Msa0103470:CDS |
| TTAACAAGAGCATCCATGCT+TGG | 0.501936 | 1_3:-10639310 | None:intergenic |
| ATTGGATTCAATAACTCTCA+AGG | 0.506992 | 1_3:-10635958 | None:intergenic |
| AGGATGAAAACCGCAAGCAT+TGG | 0.510037 | 1_3:+10636179 | Msa0103470:CDS |
| AACTTACAGATTCGACAGTA+CGG | 0.510427 | 1_3:+10636841 | Msa0103470:intron |
| ACCGCCCAGATATGTATGTA+AGG | 0.515100 | 1_3:-10635091 | None:intergenic |
| AATCGTTGGTGCACCAAGCA+TGG | 0.515353 | 1_3:+10639297 | Msa0103470:CDS |
| TGCAGTCGTCCCAATGCTTG+CGG | 0.517908 | 1_3:-10636189 | None:intergenic |
| GCATATTGCATACAAATGTA+AGG | 0.521344 | 1_3:+10640741 | Msa0103470:three_prime_UTR |
| ACGCCTGCGGTGCCATAACC+AGG | 0.521569 | 1_3:-10635030 | None:intergenic |
| ATAATTTGGATCTCTCCATA+AGG | 0.522393 | 1_3:-10637321 | None:intergenic |
| GGTGCGTATGTAAATGCAAC+TGG | 0.523461 | 1_3:+10639782 | Msa0103470:CDS |
| ATTCACATATGAGTCAGATC+AGG | 0.524093 | 1_3:+10637596 | Msa0103470:CDS |
| TGGAACGAATGAGTGATTGA+TGG | 0.525094 | 1_3:-10637533 | None:intergenic |
| GGCACCGCAGGCGTCGTCCC+GGG | 0.527337 | 1_3:+10635039 | Msa0103470:CDS |
| CCCCATATGGGTTTCACATG+TGG | 0.529870 | 1_3:-10640480 | None:intergenic |
| GTTGTTGTTGTTGTCATCAT+CGG | 0.537938 | 1_3:-10633832 | None:intergenic |
| GTTGACGTTCCTTACACCAT+TGG | 0.538392 | 1_3:+10636014 | Msa0103470:CDS |
| AGTCCTGGTTATGGCACCGC+AGG | 0.541575 | 1_3:+10635027 | Msa0103470:intron |
| GCAATTCTTCGAGATCGAGC+TGG | 0.553019 | 1_3:-10633776 | None:intergenic |
| AGGAGTTGTGCTCTTTCCTG+GGG | 0.553657 | 1_3:+10635926 | Msa0103470:intron |
| GCTTTCGCTTAAGACGGTGT+TGG | 0.556837 | 1_3:+10636911 | Msa0103470:CDS |
| TAATTGAGGATTACAAACAT+TGG | 0.558098 | 1_3:-10640841 | None:intergenic |
| TTACTTCTGGCAGGTATGCG+TGG | 0.558451 | 1_3:+10640441 | Msa0103470:intron |
| AGTACTGCAACACTATTGAA+AGG | 0.559568 | 1_3:-10640591 | None:intergenic |
| GCATCCTTACATACATATCT+GGG | 0.559575 | 1_3:+10635087 | Msa0103470:CDS |
| AAACAATCCTCCATCAGAGA+AGG | 0.563310 | 1_3:+10637729 | Msa0103470:CDS |
| TGTTTCTGAATCTACAAGGC+AGG | 0.563311 | 1_3:+10639375 | Msa0103470:CDS |
| AATTCGATGTAAAATCTGCC+AGG | 0.564880 | 1_3:+10639468 | Msa0103470:CDS |
| ACTTACAGATTCGACAGTAC+GGG | 0.570721 | 1_3:+10636842 | Msa0103470:intron |
| CAGTACGGGCGCCTAGAGGA+TGG | 0.572399 | 1_3:+10636856 | Msa0103470:CDS |
| CAAATGGATTAGCTCTAACT+GGG | 0.573810 | 1_3:+10639837 | Msa0103470:CDS |
| TGCAAAGCGGAGTGATATGC+TGG | 0.576040 | 1_3:+10639736 | Msa0103470:CDS |
| CATTCAACGAACCATCCTCT+AGG | 0.576324 | 1_3:-10636867 | None:intergenic |
| AACACACTGGCACGGTTGCA+AGG | 0.577040 | 1_3:-10637411 | None:intergenic |
| AGCATGAATATTGATGATAC+AGG | 0.577675 | 1_3:+10640646 | Msa0103470:three_prime_UTR |
| ACATACCATCGCGAACTCCA+AGG | 0.577866 | 1_3:+10637352 | Msa0103470:CDS |
| TCAGCGATACCGCAAATCGT+AGG | 0.579115 | 1_3:+10636159 | Msa0103470:CDS |
| GCCACATGTGAAACCCATAT+GGG | 0.579463 | 1_3:+10640479 | Msa0103470:CDS |
| AAATTCTATGTGAGGAGTAG+GGG | 0.580319 | 1_3:-10637779 | None:intergenic |
| GGATCTCATATAGATTGCGT+AGG | 0.582958 | 1_3:+10639416 | Msa0103470:CDS |
| ATGTCTAGTGAAGGCCCTGT+TGG | 0.586333 | 1_3:+10639761 | Msa0103470:CDS |
| GTTCATGATCTGTAGATATG+TGG | 0.588117 | 1_3:+10639269 | Msa0103470:intron |
| ACTCCTATTTGCTTGCACAA+AGG | 0.591007 | 1_3:+10637841 | Msa0103470:CDS |
| CAAAATATAGTTGGTTTCCG+GGG | 0.591312 | 1_3:+10639870 | Msa0103470:CDS |
| ATTAAGCCCTTCTCTGATGG+AGG | 0.592131 | 1_3:-10637736 | None:intergenic |
| TACCTGTTTCTGAATCTACA+AGG | 0.597932 | 1_3:+10639371 | Msa0103470:CDS |
| CGGTGTTGGATCGATGTGGA+AGG | 0.598035 | 1_3:+10636925 | Msa0103470:CDS |
| TTGGATTCAATAACTCTCAA+GGG | 0.598542 | 1_3:-10635957 | None:intergenic |
| TGAGATAACGACTTTGTACA+AGG | 0.599821 | 1_3:+10639814 | Msa0103470:CDS |
| AACAATCCTCCATCAGAGAA+GGG | 0.602387 | 1_3:+10637730 | Msa0103470:CDS |
| TGCTCTTGAAATTCTATGTG+AGG | 0.603043 | 1_3:-10637787 | None:intergenic |
| TCGTTGAATGTGGTCACTCG+TGG | 0.603436 | 1_3:+10636880 | Msa0103470:CDS |
| TTCACCCGGGACGACGCCTG+CGG | 0.608625 | 1_3:-10635043 | None:intergenic |
| CTCAAGGGAAGAGTAGCCCC+AGG | 0.609607 | 1_3:-10635942 | None:intergenic |
| AGAGGATGGTTCGTTGAATG+TGG | 0.609930 | 1_3:+10636870 | Msa0103470:CDS |
| CATACCATCGCGAACTCCAA+GGG | 0.610151 | 1_3:+10637353 | Msa0103470:CDS |
| ATGTTGAAGACACACATCAC+AGG | 0.621960 | 1_3:+10635218 | Msa0103470:CDS |
| TTGGATCGATGTGGAAGGAG+TGG | 0.625144 | 1_3:+10636930 | Msa0103470:CDS |
| GATCTCATATAGATTGCGTA+GGG | 0.626453 | 1_3:+10639417 | Msa0103470:CDS |
| GGATTTACCTACCACGCCAA+TGG | 0.626908 | 1_3:-10636030 | None:intergenic |
| TTGAAGGCAACACACTGGCA+CGG | 0.631838 | 1_3:-10637419 | None:intergenic |
| AACATACGATATACCCAACC+AGG | 0.631908 | 1_3:-10637816 | None:intergenic |
| AACAACGCTTTCGCTTAAGA+CGG | 0.633073 | 1_3:+10636905 | Msa0103470:CDS |
| GTATTGTAAGTGAATTCACC+CGG | 0.633782 | 1_3:-10635057 | None:intergenic |
| TGTCATCATCGGAAGAATCG+TGG | 0.635083 | 1_3:-10633821 | None:intergenic |
| GCATCCCTTGGAGTTCGCGA+TGG | 0.645866 | 1_3:-10637357 | None:intergenic |
| ATACTTTGAAGGCAACACAC+TGG | 0.657192 | 1_3:-10637424 | None:intergenic |
| AAGCATTGGGACGACTGCAG+AGG | 0.657758 | 1_3:+10636193 | Msa0103470:CDS |
| CATTTACATACGCACCAACA+GGG | 0.660144 | 1_3:-10639775 | None:intergenic |
| CATGTGAAACCCATATGGGG+TGG | 0.666966 | 1_3:+10640483 | Msa0103470:CDS |
| TCGACAGTACGGGCGCCTAG+AGG | 0.677937 | 1_3:+10636852 | Msa0103470:CDS |
| TGTAGATTATAATTGCAAAG+CGG | 0.679418 | 1_3:+10639723 | Msa0103470:intron |
| CGTTCCTTACACCATTGGCG+TGG | 0.682501 | 1_3:+10636019 | Msa0103470:CDS |
| AAGACGGTGTTGGATCGATG+TGG | 0.691734 | 1_3:+10636921 | Msa0103470:CDS |
| ATGCTGGTGATGTCTAGTGA+AGG | 0.693369 | 1_3:+10639752 | Msa0103470:CDS |
| TATGATGAATCAGCAAGTAG+TGG | 0.696041 | 1_3:+10637564 | Msa0103470:CDS |
| GATATGTGGAAGCAAATCGT+TGG | 0.703389 | 1_3:+10639283 | Msa0103470:intron |
| CCACATGTGAAACCCATATG+GGG | 0.708560 | 1_3:+10640480 | Msa0103470:CDS |
| TCCTTACATACATATCTGGG+CGG | 0.722690 | 1_3:+10635090 | Msa0103470:CDS |
| TATTGTAAGTGAATTCACCC+GGG | 0.729958 | 1_3:-10635056 | None:intergenic |
| TGGACAGGACTCCTTAAACG+AGG | 0.758674 | 1_3:+10637455 | Msa0103470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr1_3:10636979-10636998 | Msa0103470:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_3:10636978-10636997 | Msa0103470:intron | 0.0% |
| !! | TGATATGTTAAATATTTATA+TGG | + | chr1_3:10637913-10637932 | Msa0103470:intron | 10.0% |
| !!! | TGTTTTTCTAATATTTATAT+AGG | + | chr1_3:10639515-10639534 | Msa0103470:intron | 10.0% |
| !! | ATCTTTATATTTATTGTATA+AGG | - | chr1_3:10640024-10640043 | None:intergenic | 10.0% |
| !! | TCTAAATTATTTATTATAAC+TGG | - | chr1_3:10640050-10640069 | None:intergenic | 10.0% |
| !!! | AAATCAATAACAATCAATTT+TGG | - | chr1_3:10634085-10634104 | None:intergenic | 15.0% |
| !!! | TTTGCATTTATAATCTATTT+TGG | - | chr1_3:10634463-10634482 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTCAAAAACAT+TGG | + | chr1_3:10635417-10635436 | Msa0103470:intron | 15.0% |
| !! | AAAAATTAGTCAAAAACATT+GGG | + | chr1_3:10635418-10635437 | Msa0103470:intron | 15.0% |
| !! | AAGAAAATTTATTTCAAAAG+AGG | + | chr1_3:10635544-10635563 | Msa0103470:intron | 15.0% |
| !! | TATATTAACAAATAAGATGT+AGG | - | chr1_3:10636729-10636748 | None:intergenic | 15.0% |
| !! | AATATTTAACATATCAAAAG+TGG | - | chr1_3:10637909-10637928 | None:intergenic | 15.0% |
| !! | ATTCATAACTATATATTTGT+TGG | + | chr1_3:10638121-10638140 | Msa0103470:intron | 15.0% |
| !! | TTCATAACTATATATTTGTT+GGG | + | chr1_3:10638122-10638141 | Msa0103470:intron | 15.0% |
| !! | ACATATAATTAGTATTAGTA+AGG | + | chr1_3:10638383-10638402 | Msa0103470:intron | 15.0% |
| !! | ATACTCAAATTAGAAAAATT+TGG | + | chr1_3:10638422-10638441 | Msa0103470:intron | 15.0% |
| !!! | TTTTTGGTTTATCTAATTTT+TGG | + | chr1_3:10638641-10638660 | Msa0103470:intron | 15.0% |
| !!! | TATCTAATTTTTGGTTTATT+TGG | + | chr1_3:10638650-10638669 | Msa0103470:intron | 15.0% |
| !!! | GATATTTTGTAATATCTTAT+AGG | - | chr1_3:10639586-10639605 | None:intergenic | 15.0% |
| !! | AATATAATATGATATCTTAC+AGG | - | chr1_3:10639614-10639633 | None:intergenic | 15.0% |
| !! | GTAAATTGATCTTGTAAAAT+TGG | - | chr1_3:10634338-10634357 | None:intergenic | 20.0% |
| !!! | TTCAAGTTTTGTTTTTTTGA+GGG | - | chr1_3:10634527-10634546 | None:intergenic | 20.0% |
| !!! | AATGTAAAGTGATTTAAGTT+TGG | - | chr1_3:10634599-10634618 | None:intergenic | 20.0% |
| !! | CTTTACATTCAATTCTTATT+TGG | + | chr1_3:10634610-10634629 | Msa0103470:intron | 20.0% |
| !! | AATGTAAAATGGTTTATGTT+TGG | - | chr1_3:10634818-10634837 | None:intergenic | 20.0% |
| !! | TCAATTCAATTACAAGAATT+TGG | + | chr1_3:10634858-10634877 | Msa0103470:intron | 20.0% |
| !! | CAAATAATGAAAACTCAAAT+TGG | - | chr1_3:10634960-10634979 | None:intergenic | 20.0% |
| !!! | GTTTTCATTATTTGTTGTTT+TGG | + | chr1_3:10634966-10634985 | Msa0103470:intron | 20.0% |
| !! | TTGAAAAATAATTCTTCATC+AGG | - | chr1_3:10635524-10635543 | None:intergenic | 20.0% |
| !! | TATTATAAGCAAGGAAAAAA+TGG | - | chr1_3:10635582-10635601 | None:intergenic | 20.0% |
| !! | ATTCAATGATATTATAAGCA+AGG | - | chr1_3:10635591-10635610 | None:intergenic | 20.0% |
| !!! | CTTTTGCCTATTTAATTTTT+TGG | + | chr1_3:10635736-10635755 | Msa0103470:intron | 20.0% |
| !! | TACAGTCCAAAAAATTAAAT+AGG | - | chr1_3:10635745-10635764 | None:intergenic | 20.0% |
| !!! | AATTAAGAGCATTTATCATA+AGG | - | chr1_3:10636054-10636073 | None:intergenic | 20.0% |
| !! | ATAGAACTTCAAAAATGATA+TGG | - | chr1_3:10636407-10636426 | None:intergenic | 20.0% |
| !!! | TTATTCTAAAGGAAAGAAAA+AGG | - | chr1_3:10638074-10638093 | None:intergenic | 20.0% |
| !! | ACAAATGCTTATTATTCTAA+AGG | - | chr1_3:10638085-10638104 | None:intergenic | 20.0% |
| !!! | ATTTATCTAATTTTTAGGGA+AGG | + | chr1_3:10638591-10638610 | Msa0103470:intron | 20.0% |
| !!! | TTTATCTAATTTTTAGGGAA+GGG | + | chr1_3:10638592-10638611 | Msa0103470:intron | 20.0% |
| !!! | TAGATAAACTGGTTAATTTT+TGG | + | chr1_3:10638625-10638644 | Msa0103470:intron | 20.0% |
| !!! | TAATTTTTGGTTTATTTGGT+GGG | + | chr1_3:10638654-10638673 | Msa0103470:intron | 20.0% |
| !! | AGAAAATAAGAACAAAACAT+GGG | - | chr1_3:10638781-10638800 | None:intergenic | 20.0% |
| !! | AAGAAAATAAGAACAAAACA+TGG | - | chr1_3:10638782-10638801 | None:intergenic | 20.0% |
| !! | TTAAGTAGACATAATATTAG+AGG | + | chr1_3:10639024-10639043 | Msa0103470:intron | 20.0% |
| !! | TAAGTAGACATAATATTAGA+GGG | + | chr1_3:10639025-10639044 | Msa0103470:intron | 20.0% |
| !!! | ATTTTTTAGGTGAAAAACTA+AGG | + | chr1_3:10639156-10639175 | Msa0103470:intron | 20.0% |
| !! | ATAGAAAATGATAAAACATC+AGG | - | chr1_3:10639340-10639359 | None:intergenic | 20.0% |
| !! | AAATATTAGAAAAACACTTG+AGG | - | chr1_3:10639511-10639530 | None:intergenic | 20.0% |
| !!! | AATATACAATCTTTTACTTC+TGG | + | chr1_3:10640428-10640447 | Msa0103470:intron | 20.0% |
| !!! | TTATTTTTCTCACTTCTTAT+TGG | - | chr1_3:10640985-10641004 | None:intergenic | 20.0% |
| !!! | CCATTTTTGATTCAAGTTTA+GGG | - | chr1_3:10633683-10633702 | None:intergenic | 25.0% |
| !!! | TCCATTTTTGATTCAAGTTT+AGG | - | chr1_3:10633684-10633703 | None:intergenic | 25.0% |
| !! | CAGATATTTGAATTCACTTT+TGG | - | chr1_3:10634009-10634028 | None:intergenic | 25.0% |
| !!! | TATTGATTTTAGTGCATGTT+TGG | + | chr1_3:10634042-10634061 | Msa0103470:intron | 25.0% |
| !!! | GTTATTGATTTTGACATGTT+TGG | + | chr1_3:10634094-10634113 | Msa0103470:intron | 25.0% |
| ! | CAAGTTATGATCAATTCTAT+AGG | - | chr1_3:10634498-10634517 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTGTTTTTTTGAG+GGG | - | chr1_3:10634526-10634545 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTTTGTTTTTTTG+AGG | - | chr1_3:10634528-10634547 | None:intergenic | 25.0% |
| ! | AATTTGAGCGTAAAAATCAT+TGG | - | chr1_3:10634780-10634799 | None:intergenic | 25.0% |
| ! | AACATGAGTTCAATGTAAAA+TGG | - | chr1_3:10634829-10634848 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTATCTGGTTTT+TGG | + | chr1_3:10634889-10634908 | Msa0103470:intron | 25.0% |
| !!! | AGTCAAATTATCTGGTTTTT+GGG | + | chr1_3:10634890-10634909 | Msa0103470:intron | 25.0% |
| !! | AAAACTCAAATTGGTCTAAT+GGG | - | chr1_3:10634951-10634970 | None:intergenic | 25.0% |
| ! | ATGGTCATTTGTACAATTTA+TGG | + | chr1_3:10635143-10635162 | Msa0103470:intron | 25.0% |
| ! | ATACCTTCAAGACAAAAAAT+CGG | - | chr1_3:10635280-10635299 | None:intergenic | 25.0% |
| !!! | AAACACTTTTTTTACAGGAA+GGG | + | chr1_3:10635441-10635460 | Msa0103470:intron | 25.0% |
| ! | ATATACTACCTAAACGAAAT+AGG | - | chr1_3:10635636-10635655 | None:intergenic | 25.0% |
| !!! | ATTTGTTTCTATGTTCGAAT+GGG | + | chr1_3:10635664-10635683 | Msa0103470:intron | 25.0% |
| ! | ATAAAAATAGAAGTTCTACG+AGG | - | chr1_3:10635839-10635858 | None:intergenic | 25.0% |
| ! | TTAACTTATTGGAAGAAACA+TGG | + | chr1_3:10635884-10635903 | Msa0103470:intron | 25.0% |
| !! | AGTTATTGAATCCAATTTTG+TGG | + | chr1_3:10635965-10635984 | Msa0103470:CDS | 25.0% |
| !!! | AACATGTCACTTTATATTTC+AGG | - | chr1_3:10636526-10636545 | None:intergenic | 25.0% |
| !! | AAAGACTTTATATTTCAGGT+TGG | - | chr1_3:10636561-10636580 | None:intergenic | 25.0% |
| ! | AACCTGAAATATAAAGTCTT+TGG | + | chr1_3:10636560-10636579 | Msa0103470:intron | 25.0% |
| ! | AACCAAAGACTTTATATTTC+AGG | - | chr1_3:10636565-10636584 | None:intergenic | 25.0% |
| ! | CAAAAGAAATAATAAGACGT+GGG | - | chr1_3:10636698-10636717 | None:intergenic | 25.0% |
| !!! | CACGTCTTATTATTTCTTTT+GGG | + | chr1_3:10636697-10636716 | Msa0103470:intron | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | + | chr1_3:10637180-10637199 | Msa0103470:intron | 25.0% |
| !! | TCTCATTTTCTTTCTTTTGT+TGG | + | chr1_3:10637286-10637305 | Msa0103470:intron | 25.0% |
| !! | CTCATTTTCTTTCTTTTGTT+GGG | + | chr1_3:10637287-10637306 | Msa0103470:intron | 25.0% |
| !! | GTATGTTTTCCTCAATAATT+TGG | - | chr1_3:10637338-10637357 | None:intergenic | 25.0% |
| ! | TGATTCATCATATTCAAAAC+TGG | - | chr1_3:10637556-10637575 | None:intergenic | 25.0% |
| !!! | AAAATCTGGATTCTAGAATA+GGG | + | chr1_3:10637688-10637707 | Msa0103470:CDS | 25.0% |
| !!! | ACTAAGTCTTGTTTTTATAG+AGG | + | chr1_3:10637967-10637986 | Msa0103470:intron | 25.0% |
| !!! | TAGTGTTTTGGTACAATAAA+TGG | + | chr1_3:10638163-10638182 | Msa0103470:intron | 25.0% |
| !!! | AGTGTTTTGGTACAATAAAT+GGG | + | chr1_3:10638164-10638183 | Msa0103470:intron | 25.0% |
| !!! | CTAATTTTTGGTTTATTTGG+TGG | + | chr1_3:10638653-10638672 | Msa0103470:intron | 25.0% |
| !!! | GGTTTTTTCAGAAATAGATT+TGG | + | chr1_3:10638703-10638722 | Msa0103470:intron | 25.0% |
| ! | AAAATAAGAACAAAACATGG+GGG | - | chr1_3:10638779-10638798 | None:intergenic | 25.0% |
| ! | GAAAATAAGAACAAAACATG+GGG | - | chr1_3:10638780-10638799 | None:intergenic | 25.0% |
| ! | CTTAATATGACAATCTTTGA+GGG | - | chr1_3:10638990-10639009 | None:intergenic | 25.0% |
| ! | ACTTAATATGACAATCTTTG+AGG | - | chr1_3:10638991-10639010 | None:intergenic | 25.0% |
| ! | TGTAGATTATAATTGCAAAG+CGG | + | chr1_3:10639723-10639742 | Msa0103470:intron | 25.0% |
| !! | TACAAAATATAGTTGGTTTC+CGG | + | chr1_3:10639868-10639887 | Msa0103470:CDS | 25.0% |
| !! | TACTATTTCTTGTTATGTGT+TGG | + | chr1_3:10639938-10639957 | Msa0103470:intron | 25.0% |
| !! | ACTATTTCTTGTTATGTGTT+GGG | + | chr1_3:10639939-10639958 | Msa0103470:intron | 25.0% |
| ! | CATTATAAAGAAGATCAAAG+TGG | - | chr1_3:10640154-10640173 | None:intergenic | 25.0% |
| ! | AGCATAAATGAAGGAAAAAT+GGG | - | chr1_3:10640195-10640214 | None:intergenic | 25.0% |
| ! | AAGCATAAATGAAGGAAAAA+TGG | - | chr1_3:10640196-10640215 | None:intergenic | 25.0% |
| !!! | ACTTTTTCCAGTTGTATAAA+AGG | - | chr1_3:10640689-10640708 | None:intergenic | 25.0% |
| !!! | TTATTTGGAGGTGTTATATT+TGG | + | chr1_3:10640786-10640805 | Msa0103470:intron | 25.0% |
| !!! | TATTTGGAGGTGTTATATTT+GGG | + | chr1_3:10640787-10640806 | Msa0103470:intron | 25.0% |
| !!! | TTGGCTTTTGAATGTTTATA+TGG | - | chr1_3:10640825-10640844 | None:intergenic | 25.0% |
| ! | TAATTGAGGATTACAAACAT+TGG | - | chr1_3:10640844-10640863 | None:intergenic | 25.0% |
| ! | TCACTTCTCAAAAATAATTG+AGG | - | chr1_3:10640858-10640877 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr1_3:10640972-10640991 | None:intergenic | 25.0% |
| !! | TTGATTCAAGTTTAGGGTTT+TGG | - | chr1_3:10633677-10633696 | None:intergenic | 30.0% |
| CCCTAAACTTGAATCAAAAA+TGG | + | chr1_3:10633680-10633699 | Msa0103470:exon | 30.0% | |
| TGAAAGAGGGAAAATTACAT+AGG | - | chr1_3:10633876-10633895 | None:intergenic | 30.0% | |
| GATAGAAACGAATTGAAAGA+GGG | - | chr1_3:10633889-10633908 | None:intergenic | 30.0% | |
| TGATAGAAACGAATTGAAAG+AGG | - | chr1_3:10633890-10633909 | None:intergenic | 30.0% | |
| !!! | TTTTTGTATGTTTGGTTCTG+CGG | - | chr1_3:10634684-10634703 | None:intergenic | 30.0% |
| ATCAAAATCAATTCCAACCT+AGG | - | chr1_3:10634715-10634734 | None:intergenic | 30.0% | |
| ATGCAAAAGCTACTATTCTT+AGG | - | chr1_3:10634757-10634776 | None:intergenic | 30.0% | |
| GCAATAGAAGTCAAATTATC+TGG | + | chr1_3:10634882-10634901 | Msa0103470:intron | 30.0% | |
| ! | GAAAACTCAAATTGGTCTAA+TGG | - | chr1_3:10634952-10634971 | None:intergenic | 30.0% |
| TGTTTGTAATACAATAGTCC+TGG | + | chr1_3:10635012-10635031 | Msa0103470:intron | 30.0% | |
| TAATACAATAGTCCTGGTTA+TGG | + | chr1_3:10635018-10635037 | Msa0103470:intron | 30.0% | |
| GTCATTTGTACAATTTATGG+TGG | + | chr1_3:10635146-10635165 | Msa0103470:intron | 30.0% | |
| TTCAAGACAAAAAATCGGAA+GGG | - | chr1_3:10635275-10635294 | None:intergenic | 30.0% | |
| ! | GCTGTCAATTTCATTTTAAG+AGG | - | chr1_3:10635351-10635370 | None:intergenic | 30.0% |
| !!! | TTGGGAAACACTTTTTTTAC+AGG | + | chr1_3:10635436-10635455 | Msa0103470:intron | 30.0% |
| !!! | GAAACACTTTTTTTACAGGA+AGG | + | chr1_3:10635440-10635459 | Msa0103470:intron | 30.0% |
| AAGGGAAACATATAAGCATT+TGG | + | chr1_3:10635459-10635478 | Msa0103470:intron | 30.0% | |
| ! | AACATATAAGCATTTGGCTT+TGG | + | chr1_3:10635465-10635484 | Msa0103470:intron | 30.0% |
| !! | ACATATAAGCATTTGGCTTT+GGG | + | chr1_3:10635466-10635485 | Msa0103470:intron | 30.0% |
| TTATTTCAAAAGAGGCTTCA+TGG | + | chr1_3:10635552-10635571 | Msa0103470:intron | 30.0% | |
| TCGAACATAGAAACAAATCA+GGG | - | chr1_3:10635662-10635681 | None:intergenic | 30.0% | |
| TTCGAACATAGAAACAAATC+AGG | - | chr1_3:10635663-10635682 | None:intergenic | 30.0% | |
| !! | GATTTGTTTCTATGTTCGAA+TGG | + | chr1_3:10635663-10635682 | Msa0103470:intron | 30.0% |
| TTGGATTCAATAACTCTCAA+GGG | - | chr1_3:10635960-10635979 | None:intergenic | 30.0% | |
| ATTGGATTCAATAACTCTCA+AGG | - | chr1_3:10635961-10635980 | None:intergenic | 30.0% | |
| AAAAACAACAAGAGACTCTA+TGG | - | chr1_3:10636085-10636104 | None:intergenic | 30.0% | |
| TTAATAGCACAATGATTGAG+AGG | - | chr1_3:10636224-10636243 | None:intergenic | 30.0% | |
| AATTAGCATTCCATAGAGAT+TGG | + | chr1_3:10636362-10636381 | Msa0103470:intron | 30.0% | |
| !! | TATTTCAGGTTGGATGTAAA+AGG | - | chr1_3:10636512-10636531 | None:intergenic | 30.0% |
| !! | TGTCACTTTATATTTCAGGT+TGG | - | chr1_3:10636522-10636541 | None:intergenic | 30.0% |
| !! | ATATTTCAGGTTGGATGTAA+CGG | - | chr1_3:10636513-10636532 | None:intergenic | 30.0% |
| ! | AGGTTTTGCAGAATTATATG+TGG | - | chr1_3:10636642-10636661 | None:intergenic | 30.0% |
| CCAAAAGAAATAATAAGACG+TGG | - | chr1_3:10636699-10636718 | None:intergenic | 30.0% | |
| !! | CCACGTCTTATTATTTCTTT+TGG | + | chr1_3:10636696-10636715 | Msa0103470:intron | 30.0% |
| ! | CTGATTTTCATATTCAGCAT+TGG | + | chr1_3:10636754-10636773 | Msa0103470:intron | 30.0% |
| !! | ATTTTCATATTCAGCATTGG+TGG | + | chr1_3:10636757-10636776 | Msa0103470:intron | 30.0% |
| !!! | TTTTCATATTCAGCATTGGT+GGG | + | chr1_3:10636758-10636777 | Msa0103470:intron | 30.0% |
| ! | TTTTAACAAGTCACACCTTA+AGG | + | chr1_3:10637065-10637084 | Msa0103470:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr1_3:10637083-10637102 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr1_3:10637125-10637144 | Msa0103470:intron | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr1_3:10637131-10637150 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | - | chr1_3:10637193-10637212 | None:intergenic | 30.0% |
| ! | TCTTCACATGCATTTTATGT+TGG | + | chr1_3:10637243-10637262 | Msa0103470:intron | 30.0% |
| ATAATTTGGATCTCTCCATA+AGG | - | chr1_3:10637324-10637343 | None:intergenic | 30.0% | |
| TTGCAAGGAAGATTACTTAA+GGG | - | chr1_3:10637399-10637418 | None:intergenic | 30.0% | |
| !! | GATTTTCTGCATCTTTTTCA+TGG | - | chr1_3:10637674-10637693 | None:intergenic | 30.0% |
| TGAAAAAGATGCAGAAAATC+TGG | + | chr1_3:10637674-10637693 | Msa0103470:CDS | 30.0% | |
| !! | GAAAATCTGGATTCTAGAAT+AGG | + | chr1_3:10637687-10637706 | Msa0103470:CDS | 30.0% |
| !! | CTTAATCTAGCTTAGTGTTT+TGG | + | chr1_3:10638151-10638170 | Msa0103470:intron | 30.0% |
| AAGGTCACAAATTCAATTCA+TGG | + | chr1_3:10638224-10638243 | Msa0103470:intron | 30.0% | |
| AATTAGTATTAGTAAGGTCC+AGG | + | chr1_3:10638389-10638408 | Msa0103470:intron | 30.0% | |
| TTGAGTATACATATTGAACC+TGG | - | chr1_3:10638410-10638429 | None:intergenic | 30.0% | |
| CTAATGTAGTAGTGAACAAT+AGG | - | chr1_3:10638449-10638468 | None:intergenic | 30.0% | |
| ! | TGGGATCTTATTCCAAATTT+TGG | + | chr1_3:10638673-10638692 | Msa0103470:intron | 30.0% |
| !!! | TATTCCAAATTTTGGTTCTG+AGG | + | chr1_3:10638681-10638700 | Msa0103470:intron | 30.0% |
| !!! | ATTCCAAATTTTGGTTCTGA+GGG | + | chr1_3:10638682-10638701 | Msa0103470:intron | 30.0% |
| AAATAAGAACAAAACATGGG+GGG | - | chr1_3:10638778-10638797 | None:intergenic | 30.0% | |
| ! | TGTAGATAATTTTGTGGTTG+TGG | + | chr1_3:10638826-10638845 | Msa0103470:intron | 30.0% |
| ACATGATCGTATACTCAAAT+AGG | - | chr1_3:10638858-10638877 | None:intergenic | 30.0% | |
| TTTGAGTATACGATCATGTA+TGG | + | chr1_3:10638859-10638878 | Msa0103470:intron | 30.0% | |
| ! | ACTAAAAGTGACACTCTTTT+TGG | + | chr1_3:10639085-10639104 | Msa0103470:intron | 30.0% |
| ! | CTAAAAGTGACACTCTTTTT+GGG | + | chr1_3:10639086-10639105 | Msa0103470:intron | 30.0% |
| TGCGAATGTGACAATTATTA+TGG | + | chr1_3:10639121-10639140 | Msa0103470:intron | 30.0% | |
| GCGAATGTGACAATTATTAT+GGG | + | chr1_3:10639122-10639141 | Msa0103470:intron | 30.0% | |
| ! | TTCAGAAACAGGTATTTTAC+TGG | - | chr1_3:10639365-10639384 | None:intergenic | 30.0% |
| TTAGAAAAACACTTGAGGAT+TGG | - | chr1_3:10639506-10639525 | None:intergenic | 30.0% | |
| ATAGGATATTCTAGCGTAAT+AGG | + | chr1_3:10639533-10639552 | Msa0103470:intron | 30.0% | |
| ! | CAACTATATTTTGTAAGTGC+TGG | - | chr1_3:10639863-10639882 | None:intergenic | 30.0% |
| CAGCACTTACAAAATATAGT+TGG | + | chr1_3:10639861-10639880 | Msa0103470:CDS | 30.0% | |
| ! | ACAAAATATAGTTGGTTTCC+GGG | + | chr1_3:10639869-10639888 | Msa0103470:CDS | 30.0% |
| ! | CTATTTCTTGTTATGTGTTG+GGG | + | chr1_3:10639940-10639959 | Msa0103470:intron | 30.0% |
| ! | TATAACTGGTAGTGATAACA+TGG | - | chr1_3:10639976-10639995 | None:intergenic | 30.0% |
| GTATAAGGTTATCGTTTATG+TGG | - | chr1_3:10640009-10640028 | None:intergenic | 30.0% | |
| GTAGTTCAAAGCATAAATGA+AGG | - | chr1_3:10640204-10640223 | None:intergenic | 30.0% | |
| TCACAAGGATCAAATATCAT+TGG | - | chr1_3:10640335-10640354 | None:intergenic | 30.0% | |
| ! | AACTGAAACCTAAGTCATTT+TGG | + | chr1_3:10640528-10640547 | Msa0103470:CDS | 30.0% |
| !! | ACTGAAACCTAAGTCATTTT+GGG | + | chr1_3:10640529-10640548 | Msa0103470:CDS | 30.0% |
| TTCATGCTGCAATATGAATA+TGG | - | chr1_3:10640634-10640653 | None:intergenic | 30.0% | |
| ! | AGCATGAATATTGATGATAC+AGG | + | chr1_3:10640646-10640665 | Msa0103470:three_prime_UTR | 30.0% |
| ! | TTACTTGCCTTTTATACAAC+TGG | + | chr1_3:10640679-10640698 | Msa0103470:three_prime_UTR | 30.0% |
| GCATATTGCATACAAATGTA+AGG | + | chr1_3:10640741-10640760 | Msa0103470:three_prime_UTR | 30.0% | |
| TACAAATGTAAGGACTAGAT+TGG | + | chr1_3:10640751-10640770 | Msa0103470:three_prime_UTR | 30.0% | |
| ACAAATGTAAGGACTAGATT+GGG | + | chr1_3:10640752-10640771 | Msa0103470:three_prime_UTR | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr1_3:10640887-10640906 | Msa0103470:intron | 30.0% |
| !! | CTTTTTCACTCCTATTAAGA+AGG | + | chr1_3:10641065-10641084 | Msa0103470:three_prime_UTR | 30.0% |
| AAAAATCCTGCCTTCTTAAT+AGG | - | chr1_3:10641078-10641097 | None:intergenic | 30.0% | |
| ! | AGGATTTTTATCTGTTTGAC+TGG | + | chr1_3:10641089-10641108 | Msa0103470:three_prime_UTR | 30.0% |
| ! | GGATTTTTATCTGTTTGACT+GGG | + | chr1_3:10641090-10641109 | Msa0103470:three_prime_UTR | 30.0% |
| ! | GTTGTTGTTGTTGTCATCAT+CGG | - | chr1_3:10633835-10633854 | None:intergenic | 35.0% |
| GACTTGAAGCTAGAAATTTG+TGG | + | chr1_3:10634155-10634174 | Msa0103470:intron | 35.0% | |
| AGTTGAAGGTAAAGTGAGTT+AGG | - | chr1_3:10634300-10634319 | None:intergenic | 35.0% | |
| TCTCGCTAAAAGTTAGTTGA+AGG | - | chr1_3:10634314-10634333 | None:intergenic | 35.0% | |
| ! | TGTATGTTTGCTTCCACTTT+TGG | + | chr1_3:10634432-10634451 | Msa0103470:intron | 35.0% |
| !!! | TATTTTGGCTTCTCCAAAAG+TGG | - | chr1_3:10634448-10634467 | None:intergenic | 35.0% |
| GCAGAACCAAACATACAAAA+AGG | + | chr1_3:10634683-10634702 | Msa0103470:intron | 35.0% | |
| GAACCAAACATACAAAAAGG+TGG | + | chr1_3:10634686-10634705 | Msa0103470:intron | 35.0% | |
| ! | ACTCCACCTTTTTGTATGTT+TGG | - | chr1_3:10634692-10634711 | None:intergenic | 35.0% |
| TATTGTAAGTGAATTCACCC+GGG | - | chr1_3:10635059-10635078 | None:intergenic | 35.0% | |
| GTATTGTAAGTGAATTCACC+CGG | - | chr1_3:10635060-10635079 | None:intergenic | 35.0% | |
| AGCATCCTTACATACATATC+TGG | + | chr1_3:10635086-10635105 | Msa0103470:CDS | 35.0% | |
| GCATCCTTACATACATATCT+GGG | + | chr1_3:10635087-10635106 | Msa0103470:CDS | 35.0% | |
| TTGTTGTACTTCGTCGTTTA+TGG | + | chr1_3:10635124-10635143 | Msa0103470:intron | 35.0% | |
| !! | AATTTATGGTGGTTTCTAGC+TGG | + | chr1_3:10635157-10635176 | Msa0103470:intron | 35.0% |
| CTTCAAGACAAAAAATCGGA+AGG | - | chr1_3:10635276-10635295 | None:intergenic | 35.0% | |
| !!! | CTTCCGATTTTTTGTCTTGA+AGG | + | chr1_3:10635274-10635293 | Msa0103470:CDS | 35.0% |
| ATCCTTCATGGATTTGAGTA+TGG | + | chr1_3:10635307-10635326 | Msa0103470:intron | 35.0% | |
| !! | CATATAAGCATTTGGCTTTG+GGG | + | chr1_3:10635467-10635486 | Msa0103470:intron | 35.0% |
| TCTTCATCAGGCAACTAATA+TGG | - | chr1_3:10635512-10635531 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTTTGCTTTTCCCC+TGG | + | chr1_3:10635610-10635629 | Msa0103470:intron | 35.0% |
| CGAACATAGAAACAAATCAG+GGG | - | chr1_3:10635661-10635680 | None:intergenic | 35.0% | |
| AATGTGGTGCAGAATGAAAA+AGG | - | chr1_3:10635708-10635727 | None:intergenic | 35.0% | |
| GCATGCAAGTGTTAACTTAT+TGG | + | chr1_3:10635873-10635892 | Msa0103470:intron | 35.0% | |
| GACTAATCCTTGCAATATTC+AGG | + | chr1_3:10635906-10635925 | Msa0103470:intron | 35.0% | |
| ATATTACCTCGAAAAGTCGT+TGG | + | chr1_3:10636273-10636292 | Msa0103470:intron | 35.0% | |
| ! | AAAAGTCGTTGGTGTTTGTT+AGG | + | chr1_3:10636284-10636303 | Msa0103470:intron | 35.0% |
| !! | TATTTCAGGTTGGATGTAAC+GGG | - | chr1_3:10636551-10636570 | None:intergenic | 35.0% |
| !! | TTTCATATTCAGCATTGGTG+GGG | + | chr1_3:10636759-10636778 | Msa0103470:intron | 35.0% |
| AACTTACAGATTCGACAGTA+CGG | + | chr1_3:10636841-10636860 | Msa0103470:intron | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | - | chr1_3:10637053-10637072 | None:intergenic | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | - | chr1_3:10637054-10637073 | None:intergenic | 35.0% | |
| TGGAGAGATCCAAATTATTG+AGG | + | chr1_3:10637326-10637345 | Msa0103470:CDS | 35.0% | |
| !!! | AATTTTCCAAAAGCATCCCT+TGG | - | chr1_3:10637372-10637391 | None:intergenic | 35.0% |
| GTTGCAAGGAAGATTACTTA+AGG | - | chr1_3:10637400-10637419 | None:intergenic | 35.0% | |
| CCATCAACAGAATACTTTGA+AGG | - | chr1_3:10637438-10637457 | None:intergenic | 35.0% | |
| ! | CCTTCAAAGTATTCTGTTGA+TGG | + | chr1_3:10637435-10637454 | Msa0103470:CDS | 35.0% |
| ! | AAAGTATTCTGTTGATGGAC+AGG | + | chr1_3:10637440-10637459 | Msa0103470:CDS | 35.0% |
| TGTTTCACTTTCCTCGTTTA+AGG | - | chr1_3:10637469-10637488 | None:intergenic | 35.0% | |
| TATGATGAATCAGCAAGTAG+TGG | + | chr1_3:10637564-10637583 | Msa0103470:CDS | 35.0% | |
| ATTCACATATGAGTCAGATC+AGG | + | chr1_3:10637596-10637615 | Msa0103470:CDS | 35.0% | |
| AAATTCTATGTGAGGAGTAG+GGG | - | chr1_3:10637782-10637801 | None:intergenic | 35.0% | |
| GAAATTCTATGTGAGGAGTA+GGG | - | chr1_3:10637783-10637802 | None:intergenic | 35.0% | |
| TGAAATTCTATGTGAGGAGT+AGG | - | chr1_3:10637784-10637803 | None:intergenic | 35.0% | |
| TGCTCTTGAAATTCTATGTG+AGG | - | chr1_3:10637790-10637809 | None:intergenic | 35.0% | |
| ! | AAGCTCTGATCAGAAAACTA+TGG | - | chr1_3:10638021-10638040 | None:intergenic | 35.0% |
| CCATATCATTTGCAACAGAT+TGG | - | chr1_3:10638252-10638271 | None:intergenic | 35.0% | |
| CCAATCTGTTGCAAATGATA+TGG | + | chr1_3:10638249-10638268 | Msa0103470:intron | 35.0% | |
| !! | ATTGCCCTTTTTAGTGCTTT+GGG | + | chr1_3:10638353-10638372 | Msa0103470:intron | 35.0% |
| ! | TTGTCCCAAAGCACTAAAAA+GGG | - | chr1_3:10638360-10638379 | None:intergenic | 35.0% |
| ! | ATTGTCCCAAAGCACTAAAA+AGG | - | chr1_3:10638361-10638380 | None:intergenic | 35.0% |
| !! | ATTGTGATGGATATAGAGAG+AGG | - | chr1_3:10638530-10638549 | None:intergenic | 35.0% |
| GTTGCCTTTCTTTAAACTCT+GGG | - | chr1_3:10638557-10638576 | None:intergenic | 35.0% | |
| GAACACTTGTGTAGATAAAC+TGG | + | chr1_3:10638614-10638633 | Msa0103470:intron | 35.0% | |
| AAACCCTCAGAACCAAAATT+TGG | - | chr1_3:10638688-10638707 | None:intergenic | 35.0% | |
| ! | AGATTTGGTATGCCTTTCTT+CGG | + | chr1_3:10638718-10638737 | Msa0103470:intron | 35.0% |
| AATAAGAACAAAACATGGGG+GGG | - | chr1_3:10638777-10638796 | None:intergenic | 35.0% | |
| ! | GCGTGTTGTAGATAATTTTG+TGG | + | chr1_3:10638820-10638839 | Msa0103470:intron | 35.0% |
| GATCGTATACTCAAATAGGT+TGG | - | chr1_3:10638854-10638873 | None:intergenic | 35.0% | |
| TTATGTGACATGATCCTTCA+AGG | + | chr1_3:10638897-10638916 | Msa0103470:intron | 35.0% | |
| TATGTGACATGATCCTTCAA+GGG | + | chr1_3:10638898-10638917 | Msa0103470:intron | 35.0% | |
| TCACCTAAAAAATACTCCCT+CGG | - | chr1_3:10639149-10639168 | None:intergenic | 35.0% | |
| GTTCATGATCTGTAGATATG+TGG | + | chr1_3:10639269-10639288 | Msa0103470:intron | 35.0% | |
| !! | TACCTGTTTCTGAATCTACA+AGG | + | chr1_3:10639371-10639390 | Msa0103470:CDS | 35.0% |
| GATCTCATATAGATTGCGTA+GGG | + | chr1_3:10639417-10639436 | Msa0103470:CDS | 35.0% | |
| AATTCGATGTAAAATCTGCC+AGG | + | chr1_3:10639468-10639487 | Msa0103470:CDS | 35.0% | |
| TTTCCAACTTTCATCAAGTG+CGG | + | chr1_3:10639666-10639685 | Msa0103470:intron | 35.0% | |
| TGAGATAACGACTTTGTACA+AGG | + | chr1_3:10639814-10639833 | Msa0103470:CDS | 35.0% | |
| !! | CAAATGGATTAGCTCTAACT+GGG | + | chr1_3:10639837-10639856 | Msa0103470:CDS | 35.0% |
| ! | CAAAATATAGTTGGTTTCCG+GGG | + | chr1_3:10639870-10639889 | Msa0103470:CDS | 35.0% |
| CATCCACCAGAAATGAAAAT+GGG | - | chr1_3:10639906-10639925 | None:intergenic | 35.0% | |
| GTGGATGATACAGTTATAAC+TGG | - | chr1_3:10639990-10640009 | None:intergenic | 35.0% | |
| AAAGAAGATCAAAGTGGCAT+TGG | - | chr1_3:10640148-10640167 | None:intergenic | 35.0% | |
| TGAGGTTCAACTTAATTCTG+AGG | - | chr1_3:10640232-10640251 | None:intergenic | 35.0% | |
| ! | TTGTAAGGTGGTGAATTTTG+AGG | - | chr1_3:10640250-10640269 | None:intergenic | 35.0% |
| CATAATAAGAGGTTGTAAGG+TGG | - | chr1_3:10640262-10640281 | None:intergenic | 35.0% | |
| GTGCATAATAAGAGGTTGTA+AGG | - | chr1_3:10640265-10640284 | None:intergenic | 35.0% | |
| CAACTTATATTGCAGAGCTT+TGG | - | chr1_3:10640305-10640324 | None:intergenic | 35.0% | |
| CTAAATCTATCAGGATCACA+AGG | - | chr1_3:10640350-10640369 | None:intergenic | 35.0% | |
| TCGAGAGAACTAAATCTATC+AGG | - | chr1_3:10640359-10640378 | None:intergenic | 35.0% | |
| ! | TACAATCTTTTACTTCTGGC+AGG | + | chr1_3:10640432-10640451 | Msa0103470:intron | 35.0% |
| ! | AGGTTTCAGTTTTCTGTTTG+TGG | - | chr1_3:10640519-10640538 | None:intergenic | 35.0% |
| !! | CTGAAACCTAAGTCATTTTG+GGG | + | chr1_3:10640530-10640549 | Msa0103470:CDS | 35.0% |
| AGTACTGCAACACTATTGAA+AGG | - | chr1_3:10640594-10640613 | None:intergenic | 35.0% | |
| TTGCAGTACTAGTGAACATT+TGG | + | chr1_3:10640604-10640623 | Msa0103470:three_prime_UTR | 35.0% | |
| AAGTAAAAAGTTCCAGACGA+TGG | + | chr1_3:10640705-10640724 | Msa0103470:three_prime_UTR | 35.0% | |
| TGGGTTTATCCATGGTTATT+TGG | + | chr1_3:10640771-10640790 | Msa0103470:intron | 35.0% | |
| GTTTATCCATGGTTATTTGG+AGG | + | chr1_3:10640774-10640793 | Msa0103470:intron | 35.0% | |
| ATAACACCTCCAAATAACCA+TGG | - | chr1_3:10640783-10640802 | None:intergenic | 35.0% | |
| ! | AGGTGTTATATTTGGGTGTT+GGG | + | chr1_3:10640794-10640813 | Msa0103470:intron | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr1_3:10640892-10640911 | None:intergenic | 35.0% | |
| AAAACAATGGAGAGAGACAA+AGG | - | chr1_3:10640959-10640978 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGTTTTGTGTGTGA+AGG | - | chr1_3:10633662-10633681 | None:intergenic | 40.0% |
| ! | TGCATGTTTGGTTCCACTAT+GGG | + | chr1_3:10634054-10634073 | Msa0103470:intron | 40.0% |
| CTAGCTTCAAGTCATACTCT+TGG | - | chr1_3:10634148-10634167 | None:intergenic | 40.0% | |
| ATACAAAAAGGTGGAGTCCT+AGG | + | chr1_3:10634695-10634714 | Msa0103470:intron | 40.0% | |
| TCCTTACATACATATCTGGG+CGG | + | chr1_3:10635090-10635109 | Msa0103470:CDS | 40.0% | |
| ATGTTGAAGACACACATCAC+AGG | + | chr1_3:10635218-10635237 | Msa0103470:CDS | 40.0% | |
| ! | ACATCACAGGTCAACGTTTT+TGG | + | chr1_3:10635231-10635250 | Msa0103470:CDS | 40.0% |
| CACCATACTCAAATCCATGA+AGG | - | chr1_3:10635312-10635331 | None:intergenic | 40.0% | |
| TGGATTTGAGTATGGTGCTT+TGG | + | chr1_3:10635315-10635334 | Msa0103470:intron | 40.0% | |
| AACTGCATGTCTGTTAAAGC+AGG | - | chr1_3:10635398-10635417 | None:intergenic | 40.0% | |
| TTTCAAAAGAGGCTTCATGG+TGG | + | chr1_3:10635555-10635574 | Msa0103470:intron | 40.0% | |
| TACCTAAACGAAATAGGCCA+GGG | - | chr1_3:10635630-10635649 | None:intergenic | 40.0% | |
| !! | TGTTCGAATGGGATTTGTTG+TGG | + | chr1_3:10635675-10635694 | Msa0103470:intron | 40.0% |
| TTCATTCTGCACCACATTCT+TGG | + | chr1_3:10635710-10635729 | Msa0103470:intron | 40.0% | |
| TCATTCTGCACCACATTCTT+GGG | + | chr1_3:10635711-10635730 | Msa0103470:intron | 40.0% | |
| CTTGCATGCATAACATGATG+AGG | - | chr1_3:10635862-10635881 | None:intergenic | 40.0% | |
| CACAACTCCTGAATATTGCA+AGG | - | chr1_3:10635916-10635935 | None:intergenic | 40.0% | |
| ! | GGTTTTCATCCTACGATTTG+CGG | - | chr1_3:10636171-10636190 | None:intergenic | 40.0% |
| CATAGTCATGCCAATCTCTA+TGG | - | chr1_3:10636375-10636394 | None:intergenic | 40.0% | |
| CATAGAGATTGGCATGACTA+TGG | + | chr1_3:10636373-10636392 | Msa0103470:intron | 40.0% | |
| AATTCTGCAAAACCTGTCTG+AGG | + | chr1_3:10636647-10636666 | Msa0103470:intron | 40.0% | |
| ACTTACAGATTCGACAGTAC+GGG | + | chr1_3:10636842-10636861 | Msa0103470:intron | 40.0% | |
| AACAACGCTTTCGCTTAAGA+CGG | + | chr1_3:10636905-10636924 | Msa0103470:CDS | 40.0% | |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr1_3:10637035-10637054 | Msa0103470:intron | 40.0% |
| !! | TGGGATGTTTCTTAGCCTTA+TGG | + | chr1_3:10637306-10637325 | Msa0103470:intron | 40.0% |
| ! | ATACTTTGAAGGCAACACAC+TGG | - | chr1_3:10637427-10637446 | None:intergenic | 40.0% |
| TGGAACGAATGAGTGATTGA+TGG | - | chr1_3:10637536-10637555 | None:intergenic | 40.0% | |
| GGTGTCTGGTGTATTTAGAT+TGG | - | chr1_3:10637631-10637650 | None:intergenic | 40.0% | |
| ! | TTTTCATGGTCAGGTAGCAA+TGG | - | chr1_3:10637660-10637679 | None:intergenic | 40.0% |
| !! | TCTGCATCTTTTTCATGGTC+AGG | - | chr1_3:10637669-10637688 | None:intergenic | 40.0% |
| AAACAATCCTCCATCAGAGA+AGG | + | chr1_3:10637729-10637748 | Msa0103470:CDS | 40.0% | |
| AACAATCCTCCATCAGAGAA+GGG | + | chr1_3:10637730-10637749 | Msa0103470:CDS | 40.0% | |
| !! | ATTTCAAGAGCATTCTTGCC+TGG | + | chr1_3:10637798-10637817 | Msa0103470:CDS | 40.0% |
| AACATACGATATACCCAACC+AGG | - | chr1_3:10637819-10637838 | None:intergenic | 40.0% | |
| ACTCCTATTTGCTTGCACAA+AGG | + | chr1_3:10637841-10637860 | Msa0103470:CDS | 40.0% | |
| CTCCTATTTGCTTGCACAAA+GGG | + | chr1_3:10637842-10637861 | Msa0103470:CDS | 40.0% | |
| CTGTTGCAAATGATATGGCT+TGG | + | chr1_3:10638254-10638273 | Msa0103470:intron | 40.0% | |
| AAGCACTAAAAAGGGCAATC+TGG | - | chr1_3:10638352-10638371 | None:intergenic | 40.0% | |
| !! | GATTGCCCTTTTTAGTGCTT+TGG | + | chr1_3:10638352-10638371 | Msa0103470:intron | 40.0% |
| AGCACCCAGAGTTTAAAGAA+AGG | + | chr1_3:10638550-10638569 | Msa0103470:intron | 40.0% | |
| GGTTGCCTTTCTTTAAACTC+TGG | - | chr1_3:10638558-10638577 | None:intergenic | 40.0% | |
| ! | GATTTGGTATGCCTTTCTTC+GGG | + | chr1_3:10638719-10638738 | Msa0103470:intron | 40.0% |
| AACTGTCTAAACCCGAAGAA+AGG | - | chr1_3:10638733-10638752 | None:intergenic | 40.0% | |
| ATGTGACATGATCCTTCAAG+GGG | + | chr1_3:10638899-10638918 | Msa0103470:intron | 40.0% | |
| TGACAATTATTATGGGTCCG+AGG | + | chr1_3:10639129-10639148 | Msa0103470:intron | 40.0% | |
| GACAATTATTATGGGTCCGA+GGG | + | chr1_3:10639130-10639149 | Msa0103470:intron | 40.0% | |
| GATATGTGGAAGCAAATCGT+TGG | + | chr1_3:10639283-10639302 | Msa0103470:intron | 40.0% | |
| !! | TTAACAAGAGCATCCATGCT+TGG | - | chr1_3:10639313-10639332 | None:intergenic | 40.0% |
| TGCCTTGTAGATTCAGAAAC+AGG | - | chr1_3:10639376-10639395 | None:intergenic | 40.0% | |
| ! | TGTTTCTGAATCTACAAGGC+AGG | + | chr1_3:10639375-10639394 | Msa0103470:CDS | 40.0% |
| !! | AGGAGCTTTTGGAGATTGAT+GGG | + | chr1_3:10639395-10639414 | Msa0103470:CDS | 40.0% |
| GGATCTCATATAGATTGCGT+AGG | + | chr1_3:10639416-10639435 | Msa0103470:CDS | 40.0% | |
| TATCCGCACTTGATGAAAGT+TGG | - | chr1_3:10639672-10639691 | None:intergenic | 40.0% | |
| CATTTACATACGCACCAACA+GGG | - | chr1_3:10639778-10639797 | None:intergenic | 40.0% | |
| ACGACTTTGTACAAGGCAAA+TGG | + | chr1_3:10639821-10639840 | Msa0103470:CDS | 40.0% | |
| !! | GCAAATGGATTAGCTCTAAC+TGG | + | chr1_3:10639836-10639855 | Msa0103470:CDS | 40.0% |
| ! | TGTCTGCCCATTTTCATTTC+TGG | + | chr1_3:10639897-10639916 | Msa0103470:intron | 40.0% |
| GCATCCACCAGAAATGAAAA+TGG | - | chr1_3:10639907-10639926 | None:intergenic | 40.0% | |
| ! | TGGTAGTGATAACATGGCAA+TGG | - | chr1_3:10639970-10639989 | None:intergenic | 40.0% |
| AAGCAGTGGTATACATGTCA+TGG | - | chr1_3:10640091-10640110 | None:intergenic | 40.0% | |
| ACATGTATACCACTGCTTCA+TGG | + | chr1_3:10640093-10640112 | Msa0103470:intron | 40.0% | |
| ! | AAGTGGCATTGGATCAGATT+TGG | - | chr1_3:10640137-10640156 | None:intergenic | 40.0% |
| ! | GGTTCAACTTAATTCTGAGG+TGG | - | chr1_3:10640229-10640248 | None:intergenic | 40.0% |
| GAAGGACTGTGCATAATAAG+AGG | - | chr1_3:10640273-10640292 | None:intergenic | 40.0% | |
| !! | GAGCTTTGGAGTTTGTATGA+AGG | - | chr1_3:10640291-10640310 | None:intergenic | 40.0% |
| TGTAAAAAGCCACCCCATAT+GGG | - | chr1_3:10640495-10640514 | None:intergenic | 40.0% | |
| CGTATACCCCAAAATGACTT+AGG | - | chr1_3:10640539-10640558 | None:intergenic | 40.0% | |
| GACTAGATTGGGTTTATCCA+TGG | + | chr1_3:10640763-10640782 | Msa0103470:intron | 40.0% | |
| ! | GAGGTGTTATATTTGGGTGT+TGG | + | chr1_3:10640793-10640812 | Msa0103470:intron | 40.0% |
| TTCACTCCTATTAAGAAGGC+AGG | + | chr1_3:10641069-10641088 | Msa0103470:three_prime_UTR | 40.0% | |
| ! | GCTGGAGAATTTGCTCGATT+TGG | - | chr1_3:10633761-10633780 | None:intergenic | 45.0% |
| TGTCATCATCGGAAGAATCG+TGG | - | chr1_3:10633824-10633843 | None:intergenic | 45.0% | |
| ! | GTGCATGTTTGGTTCCACTA+TGG | + | chr1_3:10634053-10634072 | Msa0103470:intron | 45.0% |
| ! | ATGTTTGGTTCCACTATGGG+AGG | + | chr1_3:10634057-10634076 | Msa0103470:intron | 45.0% |
| !!! | AATTTTGGCTCCTCCCATAG+TGG | - | chr1_3:10634070-10634089 | None:intergenic | 45.0% |
| AAAAAGGTGGAGTCCTAGGT+TGG | + | chr1_3:10634699-10634718 | Msa0103470:intron | 45.0% | |
| ACCGCCCAGATATGTATGTA+AGG | - | chr1_3:10635094-10635113 | None:intergenic | 45.0% | |
| !! | CACAGGTCAACGTTTTTGGA+TGG | + | chr1_3:10635235-10635254 | Msa0103470:CDS | 45.0% |
| !! | AGGTCAACGTTTTTGGATGG+TGG | + | chr1_3:10635238-10635257 | Msa0103470:CDS | 45.0% |
| !! | GGTCAACGTTTTTGGATGGT+GGG | + | chr1_3:10635239-10635258 | Msa0103470:CDS | 45.0% |
| GGTATCTGTGTCATCCTTCA+TGG | + | chr1_3:10635295-10635314 | Msa0103470:intron | 45.0% | |
| ACCTAAACGAAATAGGCCAG+GGG | - | chr1_3:10635629-10635648 | None:intergenic | 45.0% | |
| CTACCTAAACGAAATAGGCC+AGG | - | chr1_3:10635631-10635650 | None:intergenic | 45.0% | |
| CTCAACAGCAGCCACAAAAT+TGG | - | chr1_3:10635979-10635998 | None:intergenic | 45.0% | |
| GTTGACGTTCCTTACACCAT+TGG | + | chr1_3:10636014-10636033 | Msa0103470:CDS | 45.0% | |
| ! | GATCTGGAAAGAGCATGTAC+AGG | - | chr1_3:10636132-10636151 | None:intergenic | 45.0% |
| TATCGCTGAAAACTCGGATC+TGG | - | chr1_3:10636148-10636167 | None:intergenic | 45.0% | |
| TTGCGGTATCGCTGAAAACT+CGG | - | chr1_3:10636154-10636173 | None:intergenic | 45.0% | |
| AGGATGAAAACCGCAAGCAT+TGG | + | chr1_3:10636179-10636198 | Msa0103470:CDS | 45.0% | |
| GGATGAAAACCGCAAGCATT+GGG | + | chr1_3:10636180-10636199 | Msa0103470:CDS | 45.0% | |
| ! | CAAACACCAACGACTTTTCG+AGG | - | chr1_3:10636282-10636301 | None:intergenic | 45.0% |
| CATTCAACGAACCATCCTCT+AGG | - | chr1_3:10636870-10636889 | None:intergenic | 45.0% | |
| AGAGGATGGTTCGTTGAATG+TGG | + | chr1_3:10636870-10636889 | Msa0103470:CDS | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr1_3:10637050-10637069 | None:intergenic | 45.0% | |
| ! | AGCAATGGTGTTAAGGTGTC+TGG | - | chr1_3:10637645-10637664 | None:intergenic | 45.0% |
| ! | GTCAGGTAGCAATGGTGTTA+AGG | - | chr1_3:10637652-10637671 | None:intergenic | 45.0% |
| ! | GGAGGATTGTTTTCCAGAAG+AGG | - | chr1_3:10637721-10637740 | None:intergenic | 45.0% |
| ATTAAGCCCTTCTCTGATGG+AGG | - | chr1_3:10637739-10637758 | None:intergenic | 45.0% | |
| CCAATTAAGCCCTTCTCTGA+TGG | - | chr1_3:10637742-10637761 | None:intergenic | 45.0% | |
| CCATCAGAGAAGGGCTTAAT+TGG | + | chr1_3:10637739-10637758 | Msa0103470:CDS | 45.0% | |
| !! | AAGAGCATTCTTGCCTGGTT+GGG | + | chr1_3:10637803-10637822 | Msa0103470:CDS | 45.0% |
| AGCCCTTTGTGCAAGCAAAT+AGG | - | chr1_3:10637847-10637866 | None:intergenic | 45.0% | |
| GCAATGTGCGCAACATTTGA+GGG | - | chr1_3:10637999-10638018 | None:intergenic | 45.0% | |
| ! | TGATCAGAGCTTTCGAGTGT+AGG | + | chr1_3:10638029-10638048 | Msa0103470:intron | 45.0% |
| GGTACAATAAATGGGAGCCT+TGG | + | chr1_3:10638172-10638191 | Msa0103470:intron | 45.0% | |
| AAATGGGAGCCTTGGTACAA+TGG | + | chr1_3:10638180-10638199 | Msa0103470:intron | 45.0% | |
| ! | TGATATGGCTTGGCTACAGT+AGG | + | chr1_3:10638264-10638283 | Msa0103470:intron | 45.0% |
| GGCTACAGTAGGTCTATAAC+AGG | + | chr1_3:10638275-10638294 | Msa0103470:intron | 45.0% | |
| !! | AACTCTGGGTGCTATTGTGA+TGG | - | chr1_3:10638543-10638562 | None:intergenic | 45.0% |
| GGGCATAGAGACTAAACACA+TGG | - | chr1_3:10638757-10638776 | None:intergenic | 45.0% | |
| TGTGACATGATCCTTCAAGG+GGG | + | chr1_3:10638900-10638919 | Msa0103470:intron | 45.0% | |
| !!! | GGTCCGAGGGAGTATTTTTT+AGG | + | chr1_3:10639143-10639162 | Msa0103470:intron | 45.0% |
| ! | ATCTACAAGGCAGGAGCTTT+TGG | + | chr1_3:10639384-10639403 | Msa0103470:CDS | 45.0% |
| !! | CAGGAGCTTTTGGAGATTGA+TGG | + | chr1_3:10639394-10639413 | Msa0103470:CDS | 45.0% |
| !! | GATTGGTGACGATGATTACC+TGG | - | chr1_3:10639489-10639508 | None:intergenic | 45.0% |
| ! | ATGCTGGTGATGTCTAGTGA+AGG | + | chr1_3:10639752-10639771 | Msa0103470:CDS | 45.0% |
| GCATTTACATACGCACCAAC+AGG | - | chr1_3:10639779-10639798 | None:intergenic | 45.0% | |
| GGTGCGTATGTAAATGCAAC+TGG | + | chr1_3:10639782-10639801 | Msa0103470:CDS | 45.0% | |
| !! | CTGCCCATTTTCATTTCTGG+TGG | + | chr1_3:10639900-10639919 | Msa0103470:intron | 45.0% |
| ACAGCATAGAAGATCCTCGA+AGG | - | chr1_3:10640388-10640407 | None:intergenic | 45.0% | |
| TGCCACATGTGAAACCCATA+TGG | + | chr1_3:10640478-10640497 | Msa0103470:CDS | 45.0% | |
| GCCACATGTGAAACCCATAT+GGG | + | chr1_3:10640479-10640498 | Msa0103470:CDS | 45.0% | |
| CCACATGTGAAACCCATATG+GGG | + | chr1_3:10640480-10640499 | Msa0103470:CDS | 45.0% | |
| CTGTAAAAAGCCACCCCATA+TGG | - | chr1_3:10640496-10640515 | None:intergenic | 45.0% | |
| ! | CCTTAGATTTTGCCATCGTC+TGG | - | chr1_3:10640720-10640739 | None:intergenic | 45.0% |
| CCAGACGATGGCAAAATCTA+AGG | + | chr1_3:10640717-10640736 | Msa0103470:three_prime_UTR | 45.0% | |
| !!! | AGTTTTATATATATATATAT+GGG | - | chr1_3:10637221-10637240 | None:intergenic | 5.0% |
| !!! | TAGTTTTATATATATATATA+TGG | - | chr1_3:10637222-10637241 | None:intergenic | 5.0% |
| !!! | TCTTTTTAATAAATAATTTT+TGG | + | chr1_3:10638798-10638817 | Msa0103470:intron | 5.0% |
| GCAATTCTTCGAGATCGAGC+TGG | - | chr1_3:10633779-10633798 | None:intergenic | 50.0% | |
| TCCCCTGGCCTATTTCGTTT+AGG | + | chr1_3:10635625-10635644 | Msa0103470:intron | 50.0% | |
| !! | GGCAAAAGCACCCAAGAATG+TGG | - | chr1_3:10635724-10635743 | None:intergenic | 50.0% |
| TCAGGAGTTGTGCTCTTTCC+TGG | + | chr1_3:10635924-10635943 | Msa0103470:intron | 50.0% | |
| CAGGAGTTGTGCTCTTTCCT+GGG | + | chr1_3:10635925-10635944 | Msa0103470:intron | 50.0% | |
| AGGAGTTGTGCTCTTTCCTG+GGG | + | chr1_3:10635926-10635945 | Msa0103470:intron | 50.0% | |
| GGATTTACCTACCACGCCAA+TGG | - | chr1_3:10636033-10636052 | None:intergenic | 50.0% | |
| TCAGCGATACCGCAAATCGT+AGG | + | chr1_3:10636159-10636178 | Msa0103470:CDS | 50.0% | |
| CAAAACCTGTCTGAGGAGCT+GGG | + | chr1_3:10636654-10636673 | Msa0103470:intron | 50.0% | |
| TCGTTGAATGTGGTCACTCG+TGG | + | chr1_3:10636880-10636899 | Msa0103470:CDS | 50.0% | |
| GCTTTCGCTTAAGACGGTGT+TGG | + | chr1_3:10636911-10636930 | Msa0103470:CDS | 50.0% | |
| ! | AAGACGGTGTTGGATCGATG+TGG | + | chr1_3:10636921-10636940 | Msa0103470:CDS | 50.0% |
| TTGGATCGATGTGGAAGGAG+TGG | + | chr1_3:10636930-10636949 | Msa0103470:CDS | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr1_3:10637038-10637057 | Msa0103470:intron | 50.0% | |
| ACATACCATCGCGAACTCCA+AGG | + | chr1_3:10637352-10637371 | Msa0103470:CDS | 50.0% | |
| CATACCATCGCGAACTCCAA+GGG | + | chr1_3:10637353-10637372 | Msa0103470:CDS | 50.0% | |
| ! | CGAACTCCAAGGGATGCTTT+TGG | + | chr1_3:10637363-10637382 | Msa0103470:CDS | 50.0% |
| TTGAAGGCAACACACTGGCA+CGG | - | chr1_3:10637422-10637441 | None:intergenic | 50.0% | |
| TGGACAGGACTCCTTAAACG+AGG | + | chr1_3:10637455-10637474 | Msa0103470:CDS | 50.0% | |
| ATAGGGAGCTGTTCCTCTTC+TGG | + | chr1_3:10637705-10637724 | Msa0103470:CDS | 50.0% | |
| !! | CAAGAGCATTCTTGCCTGGT+TGG | + | chr1_3:10637802-10637821 | Msa0103470:CDS | 50.0% |
| GGCAATGTGCGCAACATTTG+AGG | - | chr1_3:10638000-10638019 | None:intergenic | 50.0% | |
| GGAGCCTTGGTACAATGGTT+GGG | + | chr1_3:10638185-10638204 | Msa0103470:intron | 50.0% | |
| GAGCCTTGGTACAATGGTTG+GGG | + | chr1_3:10638186-10638205 | Msa0103470:intron | 50.0% | |
| CAACCCCAACCATTGTACCA+AGG | - | chr1_3:10638192-10638211 | None:intergenic | 50.0% | |
| GGGGTTGTTGCTATGTGACA+AGG | + | chr1_3:10638205-10638224 | Msa0103470:intron | 50.0% | |
| TGATGCCAACGCGAAGCTTA+GGG | - | chr1_3:10638311-10638330 | None:intergenic | 50.0% | |
| !! | ATCTGGTGCCATGAAGCTCT+TGG | - | chr1_3:10638335-10638354 | None:intergenic | 50.0% |
| GTGACATGATCCTTCAAGGG+GGG | + | chr1_3:10638901-10638920 | Msa0103470:intron | 50.0% | |
| TATTGACACTCCCCCCTTGA+AGG | - | chr1_3:10638914-10638933 | None:intergenic | 50.0% | |
| AATCGTTGGTGCACCAAGCA+TGG | + | chr1_3:10639297-10639316 | Msa0103470:CDS | 50.0% | |
| TGCAAAGCGGAGTGATATGC+TGG | + | chr1_3:10639736-10639755 | Msa0103470:CDS | 50.0% | |
| ATGTCTAGTGAAGGCCCTGT+TGG | + | chr1_3:10639761-10639780 | Msa0103470:CDS | 50.0% | |
| AAATGGGCAGACACTTACCC+CGG | - | chr1_3:10639890-10639909 | None:intergenic | 50.0% | |
| CCAAGTGTACCATGAAGCAG+TGG | - | chr1_3:10640105-10640124 | None:intergenic | 50.0% | |
| CCACTGCTTCATGGTACACT+TGG | + | chr1_3:10640102-10640121 | Msa0103470:intron | 50.0% | |
| ! | AAATGGGAAGTGCAGCTGGA+TGG | - | chr1_3:10640179-10640198 | None:intergenic | 50.0% |
| ! | GGAAAAATGGGAAGTGCAGC+TGG | - | chr1_3:10640183-10640202 | None:intergenic | 50.0% |
| TCTCTCGACTATCACCTTCG+AGG | + | chr1_3:10640371-10640390 | Msa0103470:intron | 50.0% | |
| TTACTTCTGGCAGGTATGCG+TGG | + | chr1_3:10640441-10640460 | Msa0103470:intron | 50.0% | |
| CCCCATATGGGTTTCACATG+TGG | - | chr1_3:10640483-10640502 | None:intergenic | 50.0% | |
| CATGTGAAACCCATATGGGG+TGG | + | chr1_3:10640483-10640502 | Msa0103470:CDS | 50.0% | |
| CGTTCCTTACACCATTGGCG+TGG | + | chr1_3:10636019-10636038 | Msa0103470:CDS | 55.0% | |
| CCTACCACGCCAATGGTGTA+AGG | - | chr1_3:10636026-10636045 | None:intergenic | 55.0% | |
| CCTTACACCATTGGCGTGGT+AGG | + | chr1_3:10636023-10636042 | Msa0103470:intron | 55.0% | |
| TGCAGTCGTCCCAATGCTTG+CGG | - | chr1_3:10636192-10636211 | None:intergenic | 55.0% | |
| !! | AAGCATTGGGACGACTGCAG+AGG | + | chr1_3:10636193-10636212 | Msa0103470:CDS | 55.0% |
| GCAAAACCTGTCTGAGGAGC+TGG | + | chr1_3:10636653-10636672 | Msa0103470:intron | 55.0% | |
| ! | CGGTGTTGGATCGATGTGGA+AGG | + | chr1_3:10636925-10636944 | Msa0103470:CDS | 55.0% |
| AACACACTGGCACGGTTGCA+AGG | - | chr1_3:10637414-10637433 | None:intergenic | 55.0% | |
| TTGCTTGCACAAAGGGCTGC+AGG | + | chr1_3:10637849-10637868 | Msa0103470:CDS | 55.0% | |
| TGCGCAACATTTGAGGGCTG+AGG | - | chr1_3:10637993-10638012 | None:intergenic | 55.0% | |
| GGGAGCCTTGGTACAATGGT+TGG | + | chr1_3:10638184-10638203 | Msa0103470:intron | 55.0% | |
| CCAACGCGAAGCTTAGGGAA+GGG | - | chr1_3:10638306-10638325 | None:intergenic | 55.0% | |
| CTGATGCCAACGCGAAGCTT+AGG | - | chr1_3:10638312-10638331 | None:intergenic | 55.0% | |
| GGCATCAGCCAAGAGCTTCA+TGG | + | chr1_3:10638324-10638343 | Msa0103470:intron | 55.0% | |
| AGTCCTGGTTATGGCACCGC+AGG | + | chr1_3:10635027-10635046 | Msa0103470:intron | 60.0% | |
| CTCAAGGGAAGAGTAGCCCC+AGG | - | chr1_3:10635945-10635964 | None:intergenic | 60.0% | |
| CACATCCCAGCTCCTCAGAC+AGG | - | chr1_3:10636662-10636681 | None:intergenic | 60.0% | |
| GCATCCCTTGGAGTTCGCGA+TGG | - | chr1_3:10637360-10637379 | None:intergenic | 60.0% | |
| CCCTTCCCTAAGCTTCGCGT+TGG | + | chr1_3:10638303-10638322 | Msa0103470:intron | 60.0% | |
| GCCAACGCGAAGCTTAGGGA+AGG | - | chr1_3:10638307-10638326 | None:intergenic | 60.0% | |
| !! | ACGCCTGCGGTGCCATAACC+AGG | - | chr1_3:10635033-10635052 | None:intergenic | 65.0% |
| TCGACAGTACGGGCGCCTAG+AGG | + | chr1_3:10636852-10636871 | Msa0103470:CDS | 65.0% | |
| CAGTACGGGCGCCTAGAGGA+TGG | + | chr1_3:10636856-10636875 | Msa0103470:CDS | 65.0% | |
| TTCACCCGGGACGACGCCTG+CGG | - | chr1_3:10635046-10635065 | None:intergenic | 70.0% | |
| ! | TGGCACCGCAGGCGTCGTCC+CGG | + | chr1_3:10635038-10635057 | Msa0103470:CDS | 75.0% |
| !! | GGCACCGCAGGCGTCGTCCC+GGG | + | chr1_3:10635039-10635058 | Msa0103470:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10633590 | 10641172 | 10633590 | ID=Msa0103470;Name=Msa0103470 |
| chr1_3 | mRNA | 10633590 | 10641172 | 10633590 | ID=Msa0103470-mRNA-1;Parent=Msa0103470;Name=Msa0103470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=109|1|1|1|0.81|0.75|12|442|558 |
| chr1_3 | exon | 10633590 | 10633877 | 10633590 | ID=Msa0103470-mRNA-1:exon:4393;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10635029 | 10635111 | 10635029 | ID=Msa0103470-mRNA-1:exon:4394;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10635218 | 10635295 | 10635218 | ID=Msa0103470-mRNA-1:exon:4395;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10635928 | 10636040 | 10635928 | ID=Msa0103470-mRNA-1:exon:4396;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10636149 | 10636214 | 10636149 | ID=Msa0103470-mRNA-1:exon:4397;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10636850 | 10636951 | 10636850 | ID=Msa0103470-mRNA-1:exon:4398;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10637321 | 10637870 | 10637321 | ID=Msa0103470-mRNA-1:exon:4399;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10639284 | 10639489 | 10639284 | ID=Msa0103470-mRNA-1:exon:4400;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10639728 | 10639891 | 10639728 | ID=Msa0103470-mRNA-1:exon:4401;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10640454 | 10640773 | 10640454 | ID=Msa0103470-mRNA-1:exon:4402;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10640796 | 10640869 | 10640796 | ID=Msa0103470-mRNA-1:exon:4403;Parent=Msa0103470-mRNA-1 |
| chr1_3 | exon | 10640989 | 10641172 | 10640989 | ID=Msa0103470-mRNA-1:exon:4404;Parent=Msa0103470-mRNA-1 |
| chr1_3 | five_prime_UTR | 10633590 | 10633698 | 10633590 | ID=Msa0103470-mRNA-1:five_prime_utr;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10633699 | 10633877 | 10633699 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10635029 | 10635111 | 10635029 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10635218 | 10635295 | 10635218 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10635928 | 10636040 | 10635928 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10636149 | 10636214 | 10636149 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10636850 | 10636951 | 10636850 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10637321 | 10637870 | 10637321 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10639284 | 10639489 | 10639284 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10639728 | 10639891 | 10639728 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | CDS | 10640454 | 10640589 | 10640454 | ID=Msa0103470-mRNA-1:cds;Parent=Msa0103470-mRNA-1 |
| chr1_3 | three_prime_UTR | 10640590 | 10640773 | 10640590 | ID=Msa0103470-mRNA-1:three_prime_utr;Parent=Msa0103470-mRNA-1 |
| chr1_3 | three_prime_UTR | 10640796 | 10640869 | 10640796 | ID=Msa0103470-mRNA-1:three_prime_utr;Parent=Msa0103470-mRNA-1 |
| chr1_3 | three_prime_UTR | 10640989 | 10641172 | 10640989 | ID=Msa0103470-mRNA-1:three_prime_utr;Parent=Msa0103470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
