AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626940 MtrunA17_Chr4g0003161 98.185 496 9 0 1 496 1 496 0.0 1009
Msa0626940 MtrunA17_Chr2g0333241 76.673 493 91 2 1 493 1 469 0.0 775
Msa0626940 MtrunA17_Chr7g0253251 47.561 328 99 11 17 325 1 274 2.66e-77 244
Msa0626940 MtrunA17_Chr7g0266491 29.935 461 295 9 1 447 62 508 4.44e-58 201
Msa0626940 MtrunA17_Chr7g0253151 66.443 149 38 3 183 325 5 147 7.23e-56 184
Msa0626940 MtrunA17_Chr7g0253161 43.787 169 65 4 1 165 1 143 3.14e-35 129
Msa0626940 MtrunA17_Chr8g0350161 30.508 295 189 4 15 295 76 368 2.78e-33 129
Msa0626940 MtrunA17_Chr4g0073891 31.088 193 122 2 114 295 438 630 9.89e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626940 AT1G48900.1 87.221 493 63 0 1 493 1 493 0.0 906
Msa0626940 AT5G49500.1 77.465 497 110 1 1 495 1 497 0.0 796
Msa0626940 AT1G15310.1 77.526 485 93 3 1 485 1 469 0.0 772
Msa0626940 AT1G48900.2 85.349 430 60 2 1 430 1 427 0.0 768
Msa0626940 AT5G49500.2 80.541 370 72 0 126 495 6 375 0.0 624
Msa0626940 AT5G03940.1 29.245 424 282 5 6 421 81 494 2.25e-57 200
Msa0626940 AT5G66970.1 42.105 171 96 2 1 171 1 168 1.88e-35 130
Msa0626940 AT2G45770.1 30.303 297 187 5 15 295 73 365 1.33e-31 125
Msa0626940 AT4G30600.2 31.088 193 122 2 114 295 441 633 1.43e-25 110
Msa0626940 AT4G30600.1 31.088 193 122 2 114 295 441 633 1.43e-25 110

Find 130 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAGAATTTGGGGATTT+AGG 0.076946 4_3:-6991241 None:intergenic
GATTTCTCAGATCAAGAATT+TGG 0.163090 4_3:-6991250 None:intergenic
CCTATTACTTTGCAGCTATA+TGG 0.228796 4_3:+6996559 Msa0626940:intron
ATTAACAATCTTCTTAATAT+TGG 0.234181 4_3:-6991446 None:intergenic
ATCAAGAATTTGGGGATTTA+GGG 0.252385 4_3:-6991240 None:intergenic
CCATTTGTCAGTCGTCTATT+AGG 0.261155 4_3:+6997198 Msa0626940:CDS
CGTGACTCATTCATGAGCTT+TGG 0.261469 4_3:-6998015 None:intergenic
GAACTCATTTCTCCCTTCTT+TGG 0.270678 4_3:-6998150 None:intergenic
AAGATGGTGCTCGCAGATTT+AGG 0.285184 4_3:+6991283 Msa0626940:exon
TCAGGCCAGGGAGACTTGTC+TGG 0.286825 4_3:+6997398 Msa0626940:intron
CTGTCCTGATCCTTGCCTTT+TGG 0.304349 4_3:-6997793 None:intergenic
ATTTCTCAGATCAAGAATTT+GGG 0.322852 4_3:-6991249 None:intergenic
GAGGTTCTGGTCGACAAGTT+AGG 0.324653 4_3:+6998055 Msa0626940:CDS
GAAATCGATGGGATCTAATA+AGG 0.327013 4_3:+6998269 Msa0626940:CDS
GGCGAGCAGTAGGTTCTTAA+TGG 0.328753 4_3:+6998318 Msa0626940:exon
TGCAGCTTATTAAGCAGTTC+AGG 0.332627 4_3:-6997464 None:intergenic
GGAGTGAAAGCAGGCTTTCC+AGG 0.340451 4_3:-6994303 None:intergenic
TTTGGGGATTTAGGGTTTGA+TGG 0.343522 4_3:-6991232 None:intergenic
CAACACTCTGTTTAAATGCT+TGG 0.344126 4_3:-6996870 None:intergenic
CCACAGATGCTAAAGCAAAT+TGG 0.344130 4_3:+6998219 Msa0626940:CDS
ATGCGTATAGCTCGAGGTTC+TGG 0.344763 4_3:+6998042 Msa0626940:CDS
GTGACTCATTCATGAGCTTT+GGG 0.360788 4_3:-6998014 None:intergenic
AAAGCTAAGATCCCTTTCTA+TGG 0.370177 4_3:+6994765 Msa0626940:CDS
ATACCGTTGCTTCCGAAACT+TGG 0.375298 4_3:-6996706 None:intergenic
GTAATCTATGCAGTTTGAAT+TGG 0.391907 4_3:+6998411 Msa0626940:three_prime_UTR
TGAAGAAATGCGCCAAGTTT+CGG 0.395551 4_3:+6996694 Msa0626940:CDS
GACATTCATGTTTCGAGATA+AGG 0.395944 4_3:-6998172 None:intergenic
GATCCATTGGAACAACTTCA+TGG 0.399514 4_3:-6997436 None:intergenic
CTGATTCACAACAAATACTT+TGG 0.402378 4_3:-6998582 None:intergenic
AACACTCTGTTTAAATGCTT+GGG 0.406606 4_3:-6996869 None:intergenic
ATAGAAAGGGATCTTAGCTT+TGG 0.412663 4_3:-6994763 None:intergenic
CAATGAGCTCTGCAATATCT+TGG 0.413074 4_3:+6994278 Msa0626940:CDS
GTTTCAGAATATTCTTAAGA+TGG 0.414472 4_3:+6997523 Msa0626940:CDS
CCCGTCATATTCATTGGAAC+TGG 0.417778 4_3:+6997138 Msa0626940:CDS
AAGGACATGATGGGAATGTT+TGG 0.422905 4_3:+6998288 Msa0626940:CDS
ATGGGAATGTTTGGCGGCGG+TGG 0.436163 4_3:+6998297 Msa0626940:CDS
ACAAGCGTCTCGCAAAGATA+TGG 0.438419 4_3:+6998103 Msa0626940:CDS
CCAATTTGCTTTAGCATCTG+TGG 0.443903 4_3:-6998219 None:intergenic
CTGCCAAGGTAATTAACTAA+TGG 0.444851 4_3:-6998480 None:intergenic
TTTATCATCAAAAGAAAGGC+TGG 0.445583 4_3:+6994673 Msa0626940:CDS
AAGAGTCCCGTCATATTCAT+TGG 0.446556 4_3:+6997132 Msa0626940:CDS
TTTGAATGATTTCAGGATCT+GGG 0.449312 4_3:+6994622 Msa0626940:intron
TAGGGAAGTAATGGAGATGA+TGG 0.449379 4_3:+6998074 Msa0626940:CDS
TTTGTCATGGATAGCAGTAT+TGG 0.450799 4_3:+6996826 Msa0626940:CDS
CAAGATTACCTTCCATAGAA+AGG 0.453471 4_3:-6994777 None:intergenic
AGGTTCTGGTCGACAAGTTA+GGG 0.462023 4_3:+6998056 Msa0626940:CDS
GGCCATGAATTAGTACCAAA+AGG 0.464017 4_3:+6997778 Msa0626940:CDS
GTCATGTTCGTTGGTTTACA+AGG 0.464635 4_3:+6994348 Msa0626940:CDS
TAGTAAATATACAGCAATTG+AGG 0.468692 4_3:-6998544 None:intergenic
AGGGCTTAAAATACCAAAGA+AGG 0.470429 4_3:+6998137 Msa0626940:CDS
AAGAGTTTCTTCGACGCGAA+TGG 0.474114 4_3:-6991183 None:intergenic
AGATCTTGTTATCTTTGTCA+TGG 0.480044 4_3:+6996813 Msa0626940:CDS
TTTCAGAATATTCTTAAGAT+GGG 0.482656 4_3:+6997524 Msa0626940:CDS
CATGGATAGCAGTATTGGTC+AGG 0.485878 4_3:+6996831 Msa0626940:CDS
ATGACAAAGATAACAAGATC+TGG 0.486961 4_3:-6996811 None:intergenic
GGGATCTAATAAGGACATGA+TGG 0.488421 4_3:+6998278 Msa0626940:CDS
CTCTGCAATATCTTGGATCC+TGG 0.490760 4_3:+6994285 Msa0626940:CDS
AGTACCAAAAGGCAAGGATC+AGG 0.491706 4_3:+6997789 Msa0626940:CDS
CTTATAATTGTTGATACTAG+TGG 0.492017 4_3:+6996644 Msa0626940:CDS
AATCTTGATGATCTTGCTGC+TGG 0.492553 4_3:+6991466 Msa0626940:CDS
CTAAAGCAAATTGGAGGAAT+GGG 0.493593 4_3:+6998228 Msa0626940:CDS
TGGCGGCGGTGGCGAGCAGT+AGG 0.495152 4_3:+6998308 Msa0626940:CDS
GCTAGTGTTGTCATGTTCGT+TGG 0.496689 4_3:+6994339 Msa0626940:CDS
ATGGACTCAATGACAAATGA+AGG 0.500602 4_3:+6997847 Msa0626940:CDS
GTACATAATCCTCAAGGTAA+AGG 0.502143 4_3:-6997495 None:intergenic
AGTAAATATACAGCAATTGA+GGG 0.509697 4_3:-6998543 None:intergenic
AGGCAAGGATCAGGACAGCC+AGG 0.513089 4_3:+6997798 Msa0626940:CDS
GCTAAAGCAAATTGGAGGAA+TGG 0.513724 4_3:+6998227 Msa0626940:CDS
AAGATTACCTTCCATAGAAA+GGG 0.516707 4_3:-6994776 None:intergenic
AGTTCAGGCTGTTGATCCAT+TGG 0.517338 4_3:-6997449 None:intergenic
GAAATCAATCTTGATCAAGA+TGG 0.517773 4_3:+6991267 Msa0626940:exon
ACTAATTCATGGCCAAATCC+TGG 0.519647 4_3:-6997769 None:intergenic
CCTAATAGACGACTGACAAA+TGG 0.523880 4_3:-6997198 None:intergenic
CAGGCCAGGGAGACTTGTCT+GGG 0.527597 4_3:+6997399 Msa0626940:intron
TTATAATTGTTGATACTAGT+GGG 0.532166 4_3:+6996645 Msa0626940:CDS
GAACTTCTCTCCACAGGAGA+AGG 0.533313 4_3:+6998648 Msa0626940:three_prime_UTR
AATCCATGAAGTTGTTCCAA+TGG 0.540168 4_3:+6997433 Msa0626940:CDS
AAAATGGATGGCCATGCAAA+GGG 0.540546 4_3:+6996916 Msa0626940:CDS
CTAAGATCCCTTTCTATGGA+AGG 0.541043 4_3:+6994769 Msa0626940:CDS
GATGGCCATGCAAAGGGTGG+TGG 0.543431 4_3:+6996922 Msa0626940:CDS
AAGATATGGAGCAAAATGAA+AGG 0.553586 4_3:+6998117 Msa0626940:CDS
GCGCACCACCACCCTTTGCA+TGG 0.554323 4_3:-6996927 None:intergenic
GTATCTGCACATACTAGAGC+TGG 0.555721 4_3:-6994699 None:intergenic
GGGCCATTAGTTAATTACCT+TGG 0.556737 4_3:+6998477 Msa0626940:three_prime_UTR
CCAGTTCCAATGAATATGAC+GGG 0.558074 4_3:-6997138 None:intergenic
ACAAAGCTTGATGAAATCGA+TGG 0.558585 4_3:+6998257 Msa0626940:CDS
TCTGACCGCAGAAATCTCAA+TGG 0.560687 4_3:+6998456 Msa0626940:three_prime_UTR
TGAACCCAGACAAGTCTCCC+TGG 0.565640 4_3:-6997403 None:intergenic
GAACTCTTATGAAGCACAAG+AGG 0.565713 4_3:-6998375 None:intergenic
TAAGCGTTACATGACAATGA+TGG 0.566456 4_3:+6997828 Msa0626940:CDS
AGATATGGAGCAAAATGAAA+GGG 0.567829 4_3:+6998118 Msa0626940:CDS
GACATGATGGGAATGTTTGG+CGG 0.570743 4_3:+6998291 Msa0626940:CDS
TTTAAACAGAGTGTTGCAGT+TGG 0.573047 4_3:+6996877 Msa0626940:CDS
CTGACCGCAGAAATCTCAAT+GGG 0.574030 4_3:+6998457 Msa0626940:three_prime_UTR
TCGACAAGTTAGGGAAGTAA+TGG 0.575282 4_3:+6998065 Msa0626940:CDS
TAAATCGAACTTCTCTCCAC+AGG 0.577966 4_3:+6998642 Msa0626940:three_prime_UTR
CATTGGAACTGGAGAACACA+TGG 0.583180 4_3:+6997149 Msa0626940:CDS
CTGCTTAATAAGCTGCAAGA+AGG 0.584033 4_3:+6997470 Msa0626940:CDS
CAAAGCTTGATGAAATCGAT+GGG 0.588981 4_3:+6998258 Msa0626940:CDS
GGATCTAATAAGGACATGAT+GGG 0.588990 4_3:+6998279 Msa0626940:CDS
AACAAGCTTGAATTGAACAT+CGG 0.590449 4_3:-6991410 None:intergenic
TCCAGTTCCAATGAATATGA+CGG 0.593096 4_3:-6997139 None:intergenic
TAATGGCTTATGCGCTGCCG+AGG 0.595769 4_3:+6998335 Msa0626940:three_prime_UTR
ATTTGCTTTAGCATCTGTGG+AGG 0.599015 4_3:-6998216 None:intergenic
TGAATTAGTACCAAAAGGCA+AGG 0.600112 4_3:+6997783 Msa0626940:CDS
TGTGCAGATACATTCAGAGC+TGG 0.600759 4_3:+6994711 Msa0626940:CDS
AAGCAAATTGGAGGAATGGG+TGG 0.601558 4_3:+6998231 Msa0626940:CDS
CAGATGCTAAAGCAAATTGG+AGG 0.603876 4_3:+6998222 Msa0626940:CDS
GCGCCAAGTTTCGGAAGCAA+CGG 0.608253 4_3:+6996703 Msa0626940:CDS
GGGCTTAAAATACCAAAGAA+GGG 0.608894 4_3:+6998138 Msa0626940:CDS
TTTGCTTTAGCATCTGTGGA+GGG 0.610701 4_3:-6998215 None:intergenic
GCTTTAGCATCTGTGGAGGG+AGG 0.611539 4_3:-6998212 None:intergenic
AGCAAATTGGAGGAATGGGT+GGG 0.615310 4_3:+6998232 Msa0626940:CDS
AAGAAGGAACCTTTACCTTG+AGG 0.616437 4_3:+6997486 Msa0626940:CDS
ATGGTGCTCGCAGATTTAGG+AGG 0.616535 4_3:+6991286 Msa0626940:CDS
CTGCTCGTACATAATCCTCA+AGG 0.625136 4_3:-6997501 None:intergenic
ATGATGGGAATGTTTGGCGG+CGG 0.634083 4_3:+6998294 Msa0626940:CDS
GAAAATTGCTGTGGAAGGTG+TGG 0.635052 4_3:+6996595 Msa0626940:CDS
TAAGATGGGTCCCATGAGCG+AGG 0.637224 4_3:+6997538 Msa0626940:CDS
CAAAGCTCATGAATGAGTCA+CGG 0.644435 4_3:+6998016 Msa0626940:CDS
TGGTGCTCGCAGATTTAGGA+GGG 0.645588 4_3:+6991287 Msa0626940:CDS
TTTCTCAGATCAAGAATTTG+GGG 0.652509 4_3:-6991248 None:intergenic
TGAGTATGAACCTTCTCCTG+TGG 0.659601 4_3:-6998658 None:intergenic
CCTGTGAAAATTGCTGTGGA+AGG 0.664105 4_3:+6996590 Msa0626940:CDS
AGATCCTGTGAAAATTGCTG+TGG 0.670741 4_3:+6996586 Msa0626940:CDS
ATGGCCCATTGAGATTTCTG+CGG 0.681516 4_3:-6998461 None:intergenic
ATGGATGGCCATGCAAAGGG+TGG 0.687249 4_3:+6996919 Msa0626940:CDS
CGGATGATGCGTATAGCTCG+AGG 0.687350 4_3:+6998036 Msa0626940:CDS
TAATTGTTGATACTAGTGGG+CGG 0.701070 4_3:+6996648 Msa0626940:CDS
AAGTAATCAGAAACAAACCT+CGG 0.701173 4_3:-6998352 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATTAAACATAATAG+GGG - chr4_3:6997569-6997588 None:intergenic 10.0%
!! ATTAACAATCTTCTTAATAT+TGG - chr4_3:6991449-6991468 None:intergenic 15.0%
!! AATAAAAAAATTGAAGAAAG+AGG - chr4_3:6991532-6991551 None:intergenic 15.0%
!!! AAATTAATTTTGACATGTTT+TGG - chr4_3:6992822-6992841 None:intergenic 15.0%
!!! GAATTGATTCTAAAAAAAAA+GGG - chr4_3:6993044-6993063 None:intergenic 15.0%
!!! AGAATTGATTCTAAAAAAAA+AGG - chr4_3:6993045-6993064 None:intergenic 15.0%
!! AAACTATAAGAAAATTACAT+TGG - chr4_3:6993142-6993161 None:intergenic 15.0%
!!! ATTTTGGAATATACTTAATT+AGG + chr4_3:6993216-6993235 Msa0626940:intron 15.0%
!! ATAAATATTACTTTAACAAC+TGG - chr4_3:6993994-6994013 None:intergenic 15.0%
!! AGTAGGTAATTATATTTAAT+CGG - chr4_3:6994381-6994400 None:intergenic 15.0%
!! ATAAAACAATATTAATCTGA+AGG - chr4_3:6994919-6994938 None:intergenic 15.0%
!!! TAATTGTTGTTTTTTTAAGA+AGG + chr4_3:6995861-6995880 Msa0626940:intron 15.0%
!!! AATTGTTGTTTTTTTAAGAA+GGG + chr4_3:6995862-6995881 Msa0626940:intron 15.0%
!!! AAAGAATGCTTTTTAATTTT+TGG - chr4_3:6996364-6996383 None:intergenic 15.0%
!!! TTGCTTGAATTATTTTTTTT+TGG + chr4_3:6996527-6996546 Msa0626940:intron 15.0%
!! AACATCATATTTATATAAGT+TGG - chr4_3:6997006-6997025 None:intergenic 15.0%
!! ATTATATTAAACATAATAGG+GGG - chr4_3:6997568-6997587 None:intergenic 15.0%
!! GTATTAATTTAGTGTATGTT+TGG + chr4_3:6991587-6991606 Msa0626940:intron 20.0%
!! TTGTATTGTTTCAATTAATG+TGG + chr4_3:6991897-6991916 Msa0626940:intron 20.0%
!! TGTATTGTTTCAATTAATGT+GGG + chr4_3:6991898-6991917 Msa0626940:intron 20.0%
!! TGATGAAATAAATAGTTTGA+GGG + chr4_3:6991934-6991953 Msa0626940:intron 20.0%
!! TTGATTGTGTAAAATTATTC+TGG + chr4_3:6991959-6991978 Msa0626940:intron 20.0%
!!! CTTCAAGTTATAATCAATTT+TGG - chr4_3:6992516-6992535 None:intergenic 20.0%
!! TATAACTTGAAGCTAAAAAT+TGG + chr4_3:6992524-6992543 Msa0626940:intron 20.0%
!!! AATGTAAAGTGGTATATTTT+TGG + chr4_3:6992667-6992686 Msa0626940:intron 20.0%
!! TTTGGATATTTATGTATGTT+TGG - chr4_3:6993080-6993099 None:intergenic 20.0%
!! CATACATAAATATCCAAATT+TGG + chr4_3:6993082-6993101 Msa0626940:intron 20.0%
!!! ATTTTTTGTTCAGTTTGTAT+TGG - chr4_3:6993168-6993187 None:intergenic 20.0%
!! GTATAATATGAACAAAAAGT+AGG - chr4_3:6994398-6994417 None:intergenic 20.0%
!!! CTATTGCTATTTATTTTCAA+TGG + chr4_3:6994559-6994578 Msa0626940:intron 20.0%
!!! TATTCTTTTTGAATGATTTC+AGG + chr4_3:6994615-6994634 Msa0626940:intron 20.0%
!!! ATATTATATGGATTTTGTCA+TGG + chr4_3:6995010-6995029 Msa0626940:intron 20.0%
!!! ATGTAAATTTTTTCCTGAAA+AGG - chr4_3:6995227-6995246 None:intergenic 20.0%
!!! TCAGGAAAAAATTTACATTT+TGG + chr4_3:6995229-6995248 Msa0626940:intron 20.0%
!!! AATTTACATTTTGGTTTTCT+AGG + chr4_3:6995238-6995257 Msa0626940:intron 20.0%
!!! ATTTACATTTTGGTTTTCTA+GGG + chr4_3:6995239-6995258 Msa0626940:intron 20.0%
!!! TTGTTCTGTTATTTGAATTT+GGG + chr4_3:6995410-6995429 Msa0626940:intron 20.0%
!! GAAAATTTGAATTGAGTAAT+TGG + chr4_3:6995447-6995466 Msa0626940:intron 20.0%
!!! ATTGTTGTTTTTTTAAGAAG+GGG + chr4_3:6995863-6995882 Msa0626940:intron 20.0%
!! GAAAGATAATTATGATATGA+AGG + chr4_3:6995895-6995914 Msa0626940:intron 20.0%
!!! CTCTTTTTTCTTTATTTTTG+CGG + chr4_3:6996436-6996455 Msa0626940:intron 20.0%
!! TTATAATTGTTGATACTAGT+GGG + chr4_3:6996645-6996664 Msa0626940:CDS 20.0%
!! AAACATAATACGATTATATC+AGG - chr4_3:6996970-6996989 None:intergenic 20.0%
!!! ATGATGATGATAACAAAAAA+AGG - chr4_3:6997060-6997079 None:intergenic 20.0%
!!! ATTTTTTTTGTTTAGTGTTG+CGG + chr4_3:6997104-6997123 Msa0626940:intron 20.0%
!! TTAATGTACATGATTGAAAA+AGG - chr4_3:6997333-6997352 None:intergenic 20.0%
!! TTTCAGAATATTCTTAAGAT+GGG + chr4_3:6997524-6997543 Msa0626940:CDS 20.0%
!!! AATTAATGGTTGATTTATGT+AGG + chr4_3:6997732-6997751 Msa0626940:intron 20.0%
!! AAAAAAAAAAAAAACTGCCA+AGG - chr4_3:6998497-6998516 None:intergenic 20.0%
! ATTTCTCAGATCAAGAATTT+GGG - chr4_3:6991252-6991271 None:intergenic 25.0%
! ATTTAGTGTATGTTTGGTTA+TGG + chr4_3:6991593-6991612 Msa0626940:intron 25.0%
! TTTAGTGTATGTTTGGTTAT+GGG + chr4_3:6991594-6991613 Msa0626940:intron 25.0%
!! AAGTGAGTTGAATGATAAAT+TGG + chr4_3:6991721-6991740 Msa0626940:intron 25.0%
! GATATGTACTCAAAAGAAAA+AGG - chr4_3:6991857-6991876 None:intergenic 25.0%
!!! TTTTGAGTACATATCTAACT+GGG + chr4_3:6991862-6991881 Msa0626940:intron 25.0%
! GTGATGAAATAAATAGTTTG+AGG + chr4_3:6991933-6991952 Msa0626940:intron 25.0%
!! CTTCAAGTTAGAATCAATTA+TGG + chr4_3:6992415-6992434 Msa0626940:intron 25.0%
!! CAAGTTATAATCAATTTTGG+AGG - chr4_3:6992513-6992532 None:intergenic 25.0%
!! TAGAATCAATTCTCTAAAAG+TGG + chr4_3:6993052-6993071 Msa0626940:intron 25.0%
! TTTATACCATCTACAATTTC+AGG - chr4_3:6993110-6993129 None:intergenic 25.0%
!! TACAATTTGAGAGACTATTT+TGG + chr4_3:6993200-6993219 Msa0626940:intron 25.0%
! TGATATAGTGATACAATTTC+AGG + chr4_3:6993240-6993259 Msa0626940:intron 25.0%
! TATATTCTATTCTGCATTAG+AGG + chr4_3:6993302-6993321 Msa0626940:intron 25.0%
!!! GTTAGACTTTAGAGTTATTT+TGG + chr4_3:6993429-6993448 Msa0626940:intron 25.0%
! ATTAAACTGAAAACAACTGA+TGG + chr4_3:6993603-6993622 Msa0626940:intron 25.0%
!! GATTTCAACTTTTCTTTCAA+AGG - chr4_3:6993766-6993785 None:intergenic 25.0%
! TTTAACAACTGGAATTGAAT+GGG - chr4_3:6993983-6994002 None:intergenic 25.0%
! CATATTTCATCCTTTGAATT+TGG + chr4_3:6994068-6994087 Msa0626940:intron 25.0%
! TTGATCTTAGAATTTAGAAG+AGG + chr4_3:6994117-6994136 Msa0626940:intron 25.0%
! TTAAACCACTAACAAAAACA+CGG - chr4_3:6994159-6994178 None:intergenic 25.0%
!!! TTACAAACTCTTTTGATTCT+AGG + chr4_3:6994248-6994267 Msa0626940:intron 25.0%
! ATAGACAACCAATAATTGTA+AGG - chr4_3:6994543-6994562 None:intergenic 25.0%
!! GCATTTTATCATCAAAAGAA+AGG + chr4_3:6994669-6994688 Msa0626940:CDS 25.0%
! TATTAGACATGCTTTATACA+TGG + chr4_3:6994936-6994955 Msa0626940:intron 25.0%
! GCAAAGACAGTTATATTATA+TGG + chr4_3:6994998-6995017 Msa0626940:intron 25.0%
! GAAAGACAATTATGATATGA+AGG + chr4_3:6995108-6995127 Msa0626940:intron 25.0%
! CATGTATAGTTGTTAGAAAT+TGG + chr4_3:6995148-6995167 Msa0626940:intron 25.0%
! TCTAGATTAGAAGTTAATGT+CGG + chr4_3:6995184-6995203 Msa0626940:intron 25.0%
! AATTGAGTAACTGATTATGT+TGG + chr4_3:6995374-6995393 Msa0626940:intron 25.0%
!! GTTGTTCTGTTATTTGAATT+TGG + chr4_3:6995409-6995428 Msa0626940:intron 25.0%
! AATTTGCAAATAGGCAAAAA+AGG - chr4_3:6995711-6995730 None:intergenic 25.0%
! TTGTCTATTCACAAATTTCA+AGG + chr4_3:6995762-6995781 Msa0626940:intron 25.0%
!! TCTAGTTTAGAAGTTAAAGT+CGG + chr4_3:6995971-6995990 Msa0626940:intron 25.0%
!!! AAAATGTGGATTTTTTCATG+TGG - chr4_3:6996031-6996050 None:intergenic 25.0%
!! ACATGAAAAAATCCACATTT+TGG + chr4_3:6996030-6996049 Msa0626940:intron 25.0%
! GCAATGTTAAAAGTGATTAT+TGG - chr4_3:6996133-6996152 None:intergenic 25.0%
! AAGAACATAAGGAATTGAAA+AGG - chr4_3:6996204-6996223 None:intergenic 25.0%
! TTATTGCAAGAAAGAACATA+AGG - chr4_3:6996215-6996234 None:intergenic 25.0%
! ATGTTCTTTCTTGCAATAAA+AGG + chr4_3:6996216-6996235 Msa0626940:intron 25.0%
! TGTTCTTTCTTGCAATAAAA+GGG + chr4_3:6996217-6996236 Msa0626940:intron 25.0%
! ATGCTATGTTATTGTTCTAT+TGG + chr4_3:6996316-6996335 Msa0626940:intron 25.0%
!!! TTCTTTTTTTCTTTATCCCA+AGG + chr4_3:6996378-6996397 Msa0626940:intron 25.0%
! TAAAGAAAAAAGAGGAGAAA+TGG - chr4_3:6996430-6996449 None:intergenic 25.0%
! CGCAAAAATAAAGAAAAAAG+AGG - chr4_3:6996438-6996457 None:intergenic 25.0%
! CTTATAATTGTTGATACTAG+TGG + chr4_3:6996644-6996663 Msa0626940:CDS 25.0%
! AGCTGTAATTATCACAAAAA+TGG + chr4_3:6996900-6996919 Msa0626940:CDS 25.0%
! GTAATTATCACAAAAATGGA+TGG + chr4_3:6996904-6996923 Msa0626940:CDS 25.0%
! AAGTATATACATGCTTGAAA+AGG - chr4_3:6997272-6997291 None:intergenic 25.0%
!! TTCAAGCATGTATATACTTT+TGG + chr4_3:6997273-6997292 Msa0626940:intron 25.0%
! GATTAATATAAAGGGAAAAC+TGG - chr4_3:6997360-6997379 None:intergenic 25.0%
! GTTTCAGAATATTCTTAAGA+TGG + chr4_3:6997523-6997542 Msa0626940:CDS 25.0%
!!! GGAAACAAAATAGTTTTACA+CGG - chr4_3:6998525-6998544 None:intergenic 25.0%
! AGTAAATATACAGCAATTGA+GGG - chr4_3:6998546-6998565 None:intergenic 25.0%
! TAGTAAATATACAGCAATTG+AGG - chr4_3:6998547-6998566 None:intergenic 25.0%
!!! AAGTTTTTTGTGAGGAAGAT+CGG - chr4_3:6991212-6991231 None:intergenic 30.0%
!!! TTTGATGGAAGTTTTTTGTG+AGG - chr4_3:6991220-6991239 None:intergenic 30.0%
ATCAAGAATTTGGGGATTTA+GGG - chr4_3:6991243-6991262 None:intergenic 30.0%
TTTCTCAGATCAAGAATTTG+GGG - chr4_3:6991251-6991270 None:intergenic 30.0%
GATTTCTCAGATCAAGAATT+TGG - chr4_3:6991253-6991272 None:intergenic 30.0%
GAAATCAATCTTGATCAAGA+TGG + chr4_3:6991267-6991286 Msa0626940:exon 30.0%
AACAAGCTTGAATTGAACAT+CGG - chr4_3:6991413-6991432 None:intergenic 30.0%
TTAGTGTATGTTTGGTTATG+GGG + chr4_3:6991595-6991614 Msa0626940:intron 30.0%
CTCAAAAGAAAAAGGACATA+AGG - chr4_3:6991849-6991868 None:intergenic 30.0%
!! CTTTTGAGTACATATCTAAC+TGG + chr4_3:6991861-6991880 Msa0626940:intron 30.0%
TCTAACAAGCAGCTAAAAAT+TGG - chr4_3:6992091-6992110 None:intergenic 30.0%
! TCTAATTTGCAGCTAACAAT+TGG + chr4_3:6992157-6992176 Msa0626940:intron 30.0%
!!! TTGATTCTAGGACTGATTTT+TGG + chr4_3:6992185-6992204 Msa0626940:intron 30.0%
!! TGTTCTAACTCACTTTTACT+CGG + chr4_3:6992208-6992227 Msa0626940:intron 30.0%
!!! CGATACCAATTTTTAGTATG+TGG + chr4_3:6992243-6992262 Msa0626940:intron 30.0%
TGTCACCACATACTAAAAAT+TGG - chr4_3:6992251-6992270 None:intergenic 30.0%
GATTCTGACTAAAATTGAGT+TGG + chr4_3:6992291-6992310 Msa0626940:intron 30.0%
!! GAGGTGAAGTGATTTATTTT+TGG + chr4_3:6992313-6992332 Msa0626940:intron 30.0%
TCTAACTTGAAGCTAAACAT+TGG - chr4_3:6992407-6992426 None:intergenic 30.0%
!! AAATTGGAGCTTTTGATTCT+AGG + chr4_3:6992540-6992559 Msa0626940:intron 30.0%
! AAAGTGAGTTGAATGTAAAG+TGG + chr4_3:6992656-6992675 Msa0626940:intron 30.0%
! GTTGATTCTAACTTAAAGTC+AGG - chr4_3:6992765-6992784 None:intergenic 30.0%
! CTTTAAGTTAGAATCAACTC+TGG + chr4_3:6992767-6992786 Msa0626940:intron 30.0%
! TCTAGAATCAATTCTCTAGA+GGG + chr4_3:6992848-6992867 Msa0626940:intron 30.0%
ACAATTTCAGGAACCAAATT+TGG - chr4_3:6993098-6993117 None:intergenic 30.0%
ACTATGTACTTTGATCTATG+AGG + chr4_3:6993393-6993412 Msa0626940:intron 30.0%
TTGAATGGGCATCTAATTTA+TGG - chr4_3:6993969-6993988 None:intergenic 30.0%
CTTTAACAACTGGAATTGAA+TGG - chr4_3:6993984-6994003 None:intergenic 30.0%
TGTACTTCTTCCAAATTCAA+AGG - chr4_3:6994081-6994100 None:intergenic 30.0%
!!! ACACTAGCTTTTCCTTTTTT+GGG - chr4_3:6994327-6994346 None:intergenic 30.0%
!!! AACACTAGCTTTTCCTTTTT+TGG - chr4_3:6994328-6994347 None:intergenic 30.0%
TCATTTGATGCAAATGATAC+TGG + chr4_3:6994426-6994445 Msa0626940:intron 30.0%
! TTTTGAATGATTTCAGGATC+TGG + chr4_3:6994621-6994640 Msa0626940:intron 30.0%
TTTGAATGATTTCAGGATCT+GGG + chr4_3:6994622-6994641 Msa0626940:intron 30.0%
! TGCATATTTTGTACAAGTAG+TGG - chr4_3:6994652-6994671 None:intergenic 30.0%
TTTATCATCAAAAGAAAGGC+TGG + chr4_3:6994673-6994692 Msa0626940:CDS 30.0%
AAGATTACCTTCCATAGAAA+GGG - chr4_3:6994779-6994798 None:intergenic 30.0%
GTAAACTCAAAATCTTCAAC+TGG + chr4_3:6994836-6994855 Msa0626940:intron 30.0%
TAGATTTCGAAACTATCAGA+CGG + chr4_3:6995051-6995070 Msa0626940:intron 30.0%
ATTGTCTTTCCGAAATGAAT+CGG - chr4_3:6995098-6995117 None:intergenic 30.0%
ATTTACTACTCTAGATACAG+CGG - chr4_3:6995537-6995556 None:intergenic 30.0%
TACAATTTCAGAGTGCAAAT+TGG - chr4_3:6995562-6995581 None:intergenic 30.0%
!! AATTTGCACTCTGAAATTGT+AGG + chr4_3:6995561-6995580 Msa0626940:intron 30.0%
TTGCCTATTCACAAATTTCA+GGG - chr4_3:6995603-6995622 None:intergenic 30.0%
TTTGCCTATTCACAAATTTC+AGG - chr4_3:6995604-6995623 None:intergenic 30.0%
! AAAAAAGACCCGATTTTGAA+TGG + chr4_3:6995621-6995640 Msa0626940:intron 30.0%
AGTCCATACAAGTTAACAAA+AGG - chr4_3:6995663-6995682 None:intergenic 30.0%
TTGCCTATTTGCAAATTTCA+AGG + chr4_3:6995714-6995733 Msa0626940:intron 30.0%
! GACAAAAAAAGACCTGATTT+TGG - chr4_3:6995747-6995766 None:intergenic 30.0%
!! TTTTAAGAAGGGGTTCATTT+CGG + chr4_3:6995873-6995892 Msa0626940:intron 30.0%
CATGTACAGTTGTTAGAAAT+TGG + chr4_3:6995935-6995954 Msa0626940:intron 30.0%
!!! ATGTGGATTTTTTCCTGAAA+AGG - chr4_3:6996014-6996033 None:intergenic 30.0%
!!! AATCCACATTTTGGTTTTCT+AGG + chr4_3:6996039-6996058 Msa0626940:intron 30.0%
!!! ATCCACATTTTGGTTTTCTA+GGG + chr4_3:6996040-6996059 Msa0626940:intron 30.0%
!!! ATGACATTTTGGGCTTTATT+TGG + chr4_3:6996067-6996086 Msa0626940:intron 30.0%
!!! TGACATTTTGGGCTTTATTT+GGG + chr4_3:6996068-6996087 Msa0626940:intron 30.0%
ATTGAAAAGGCTAGAACATT+TGG - chr4_3:6996191-6996210 None:intergenic 30.0%
!!! AATCCACAGGGTTTTTTAAT+TGG - chr4_3:6996267-6996286 None:intergenic 30.0%
AATTAAAAAACCCTGTGGAT+TGG + chr4_3:6996266-6996285 Msa0626940:intron 30.0%
AGAAATCCAAATAGATCCTT+GGG - chr4_3:6996397-6996416 None:intergenic 30.0%
!!! TTTTCTTTATTTTTGCGGTG+AGG + chr4_3:6996441-6996460 Msa0626940:intron 30.0%
!!! TTTCTTTATTTTTGCGGTGA+GGG + chr4_3:6996442-6996461 Msa0626940:intron 30.0%
!! ACAACATAATGATGGACTAT+GGG - chr4_3:6996474-6996493 None:intergenic 30.0%
TTGTATGGACAACATAATGA+TGG - chr4_3:6996482-6996501 None:intergenic 30.0%
CATATAGCTGCAAAGTAATA+GGG - chr4_3:6996561-6996580 None:intergenic 30.0%
TGAAAGATATTAGAGACTAC+TGG - chr4_3:6996773-6996792 None:intergenic 30.0%
ATGACAAAGATAACAAGATC+TGG - chr4_3:6996814-6996833 None:intergenic 30.0%
! AGATCTTGTTATCTTTGTCA+TGG + chr4_3:6996813-6996832 Msa0626940:CDS 30.0%
AACACTCTGTTTAAATGCTT+GGG - chr4_3:6996872-6996891 None:intergenic 30.0%
TGTACATGATTGAAAAAGGT+GGG - chr4_3:6997329-6997348 None:intergenic 30.0%
ATGTACATGATTGAAAAAGG+TGG - chr4_3:6997330-6997349 None:intergenic 30.0%
CGACTGGAGATTAATATAAA+GGG - chr4_3:6997368-6997387 None:intergenic 30.0%
CCTTTATATTAATCTCCAGT+CGG + chr4_3:6997366-6997385 Msa0626940:intron 30.0%
!! AAAGTATTTTTCCACCAAGT+GGG - chr4_3:6997624-6997643 None:intergenic 30.0%
AATTAAAGGTTAGCATGTGA+AGG - chr4_3:6997963-6997982 None:intergenic 30.0%
TGAAACACGATAGCAATTAA+AGG - chr4_3:6997977-6997996 None:intergenic 30.0%
AAGATATGGAGCAAAATGAA+AGG + chr4_3:6998117-6998136 Msa0626940:CDS 30.0%
AGATATGGAGCAAAATGAAA+GGG + chr4_3:6998118-6998137 Msa0626940:CDS 30.0%
AAGTAATCAGAAACAAACCT+CGG - chr4_3:6998355-6998374 None:intergenic 30.0%
GTAATCTATGCAGTTTGAAT+TGG + chr4_3:6998411-6998430 Msa0626940:three_prime_UTR 30.0%
CTGATTCACAACAAATACTT+TGG - chr4_3:6998585-6998604 None:intergenic 30.0%
GATCAAGAATTTGGGGATTT+AGG - chr4_3:6991244-6991263 None:intergenic 35.0%
!! ACCTTCAACTCACTTTTAGT+CGG - chr4_3:6991669-6991688 None:intergenic 35.0%
AAGGTAAAGTGATCTATGCT+CGG + chr4_3:6991684-6991703 Msa0626940:intron 35.0%
AAAAAGGACATAAGGAGAGA+GGG - chr4_3:6991841-6991860 None:intergenic 35.0%
TTAATGTGGGTTTGATTCTG+TGG + chr4_3:6991911-6991930 Msa0626940:intron 35.0%
! CTGGCTTAAAAGTGTGTTTA+AGG + chr4_3:6991978-6991997 Msa0626940:intron 35.0%
!! CAATTGGAGCTTTTGATTCT+AGG + chr4_3:6992173-6992192 Msa0626940:intron 35.0%
!! TCTGACTAAAATTGAGTTGG+AGG + chr4_3:6992294-6992313 Msa0626940:intron 35.0%
!!! TGCACCTCTAGAATCAATTT+TGG - chr4_3:6992443-6992462 None:intergenic 35.0%
TCACAACAGAATCAAACACA+CGG - chr4_3:6992602-6992621 None:intergenic 35.0%
TAAGTTAGAATCAACTCTGG+AGG + chr4_3:6992770-6992789 Msa0626940:intron 35.0%
GGATGTTCTCTGGTATAATT+TGG - chr4_3:6992801-6992820 None:intergenic 35.0%
! CTCTAGAGAATTGATTCTAG+AGG - chr4_3:6992849-6992868 None:intergenic 35.0%
!! CTCTAGAATCAATTCTCTAG+AGG + chr4_3:6992847-6992866 Msa0626940:intron 35.0%
! CTAGAATCAATTCTCTAGAG+GGG + chr4_3:6992849-6992868 Msa0626940:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_3:6992945-6992964 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_3:6992944-6992963 Msa0626940:intron 35.0%
TCTAAAAAAAAAGGGCAACC+CGG - chr4_3:6993036-6993055 None:intergenic 35.0%
TTGGTTCCTGAAATTGTAGA+TGG + chr4_3:6993101-6993120 Msa0626940:intron 35.0%
! TATTCTGCATTAGAGGCTTT+TGG + chr4_3:6993309-6993328 Msa0626940:intron 35.0%
GCACATGTATAAGTGTTCAA+GGG - chr4_3:6993656-6993675 None:intergenic 35.0%
AGCACATGTATAAGTGTTCA+AGG - chr4_3:6993657-6993676 None:intergenic 35.0%
GCTTGGTAAAAAGTTTATCC+AGG - chr4_3:6993744-6993763 None:intergenic 35.0%
! CAACTTTTCTTTCAAAGGCT+TGG - chr4_3:6993761-6993780 None:intergenic 35.0%
!!! GCTCTCAAACTTTTTTCAAC+AGG + chr4_3:6993847-6993866 Msa0626940:intron 35.0%
! TTTGGAAGAAGTACAAGTCT+AGG + chr4_3:6994086-6994105 Msa0626940:intron 35.0%
CTTAGAATTTAGAAGAGGCT+TGG + chr4_3:6994122-6994141 Msa0626940:intron 35.0%
! GCATTTTGTCAAGCAATATG+TGG + chr4_3:6994513-6994532 Msa0626940:intron 35.0%
GTGGCTTTCCTTACAATTAT+TGG + chr4_3:6994532-6994551 Msa0626940:intron 35.0%
! AATGCATTGTCACTTACTGA+TGG + chr4_3:6994585-6994604 Msa0626940:intron 35.0%
ATAGAAAGGGATCTTAGCTT+TGG - chr4_3:6994766-6994785 None:intergenic 35.0%
AAAGCTAAGATCCCTTTCTA+TGG + chr4_3:6994765-6994784 Msa0626940:CDS 35.0%
CAAGATTACCTTCCATAGAA+AGG - chr4_3:6994780-6994799 None:intergenic 35.0%
CTTTCTATGGAAGGTAATCT+TGG + chr4_3:6994778-6994797 Msa0626940:intron 35.0%
!!! TTTACCCTTTTTCTGAAGTG+TGG + chr4_3:6994863-6994882 Msa0626940:intron 35.0%
!!! TTACCCTTTTTCTGAAGTGT+GGG + chr4_3:6994864-6994883 Msa0626940:intron 35.0%
!!! GGCTTTTGATAATGAAGTCA+AGG + chr4_3:6994957-6994976 Msa0626940:intron 35.0%
GAAGTCAAGGTTATAGATGT+TGG + chr4_3:6994970-6994989 Msa0626940:intron 35.0%
ACGGATAATATTCCATGAGA+AGG + chr4_3:6995070-6995089 Msa0626940:intron 35.0%
CGGATAATATTCCATGAGAA+GGG + chr4_3:6995071-6995090 Msa0626940:intron 35.0%
GGATAATATTCCATGAGAAG+GGG + chr4_3:6995072-6995091 Msa0626940:intron 35.0%
AGTTGAATCTGAGTTCAAGA+TGG + chr4_3:6995287-6995306 Msa0626940:intron 35.0%
TGAGTTCAAGATGGTTAGAT+TGG + chr4_3:6995296-6995315 Msa0626940:intron 35.0%
TTTACTACTCTAGATACAGC+GGG - chr4_3:6995536-6995555 None:intergenic 35.0%
TACCCCTGAAATTTGTGAAT+AGG + chr4_3:6995597-6995616 Msa0626940:intron 35.0%
TGCCTATTCACAAATTTCAG+GGG - chr4_3:6995602-6995621 None:intergenic 35.0%
!!! GGTCCTTTTGTTAACTTGTA+TGG + chr4_3:6995657-6995676 Msa0626940:intron 35.0%
!! ACTTGTATGGACTAGTTTGA+CGG + chr4_3:6995670-6995689 Msa0626940:intron 35.0%
CCACCTTGAAATTTGCAAAT+AGG - chr4_3:6995720-6995739 None:intergenic 35.0%
CCTATTTGCAAATTTCAAGG+TGG + chr4_3:6995717-6995736 Msa0626940:intron 35.0%
! TCTAGGGAGTAATGACATTT+TGG + chr4_3:6996056-6996075 Msa0626940:intron 35.0%
! CTAGGGAGTAATGACATTTT+GGG + chr4_3:6996057-6996076 Msa0626940:intron 35.0%
! TTTTAACATTGCCGAGTTCA+AGG + chr4_3:6996141-6996160 Msa0626940:intron 35.0%
AAAAGGCTAGAACATTTGGT+AGG - chr4_3:6996187-6996206 None:intergenic 35.0%
ATAAAAGGGCAAGAAGACTA+AGG + chr4_3:6996231-6996250 Msa0626940:intron 35.0%
TAGCCAATTAAAAAACCCTG+TGG + chr4_3:6996261-6996280 Msa0626940:intron 35.0%
TAATCTATCACCAATCCACA+GGG - chr4_3:6996279-6996298 None:intergenic 35.0%
TTAATCTATCACCAATCCAC+AGG - chr4_3:6996280-6996299 None:intergenic 35.0%
CTTTATCCCAAGGATCTATT+TGG + chr4_3:6996388-6996407 Msa0626940:intron 35.0%
GAGAAATCCAAATAGATCCT+TGG - chr4_3:6996398-6996417 None:intergenic 35.0%
!!! TTCTTTATTTTTGCGGTGAG+GGG + chr4_3:6996443-6996462 Msa0626940:intron 35.0%
!! GACAACATAATGATGGACTA+TGG - chr4_3:6996475-6996494 None:intergenic 35.0%
TAGAGAAGCAAAGAGTTGTA+TGG - chr4_3:6996497-6996516 None:intergenic 35.0%
CCATATAGCTGCAAAGTAAT+AGG - chr4_3:6996562-6996581 None:intergenic 35.0%
CCTATTACTTTGCAGCTATA+TGG + chr4_3:6996559-6996578 Msa0626940:intron 35.0%
TAATTGTTGATACTAGTGGG+CGG + chr4_3:6996648-6996667 Msa0626940:CDS 35.0%
!!! TATTAGAGACTACTGGCTTT+TGG - chr4_3:6996766-6996785 None:intergenic 35.0%
! AGATCTGGTTTCTGAATCAA+CGG - chr4_3:6996799-6996818 None:intergenic 35.0%
TTTGTCATGGATAGCAGTAT+TGG + chr4_3:6996826-6996845 Msa0626940:CDS 35.0%
CAACACTCTGTTTAAATGCT+TGG - chr4_3:6996873-6996892 None:intergenic 35.0%
!! TTTAAACAGAGTGTTGCAGT+TGG + chr4_3:6996877-6996896 Msa0626940:CDS 35.0%
TCCAGTTCCAATGAATATGA+CGG - chr4_3:6997142-6997161 None:intergenic 35.0%
! GTCTATTAGGTGTGTACTTT+TGG + chr4_3:6997211-6997230 Msa0626940:intron 35.0%
CATATCCTAAAACCAATGTC+GGG - chr4_3:6997244-6997263 None:intergenic 35.0%
GCATATCCTAAAACCAATGT+CGG - chr4_3:6997245-6997264 None:intergenic 35.0%
TATACATGCTTGAAAAGGTG+AGG - chr4_3:6997267-6997286 None:intergenic 35.0%
!!! TTTGGTTTTTGTCCCAACAT+TGG + chr4_3:6997291-6997310 Msa0626940:intron 35.0%
!!! TTTGTCCCAACATTGGTTTT+AGG + chr4_3:6997298-6997317 Msa0626940:intron 35.0%
CGTATCCTAAAACCAATGTT+GGG - chr4_3:6997306-6997325 None:intergenic 35.0%
CCGACTGGAGATTAATATAA+AGG - chr4_3:6997369-6997388 None:intergenic 35.0%
! TTAATCTCCAGTCGGTATTT+TGG + chr4_3:6997374-6997393 Msa0626940:intron 35.0%
AATCCATGAAGTTGTTCCAA+TGG + chr4_3:6997433-6997452 Msa0626940:CDS 35.0%
GTACATAATCCTCAAGGTAA+AGG - chr4_3:6997498-6997517 None:intergenic 35.0%
! AAGTATTTTTCCACCAAGTG+GGG - chr4_3:6997623-6997642 None:intergenic 35.0%
!! CAAAGTATTTTTCCACCAAG+TGG - chr4_3:6997625-6997644 None:intergenic 35.0%
! CACTTGGTGGAAAAATACTT+TGG + chr4_3:6997623-6997642 Msa0626940:intron 35.0%
TTGGTGGAAAAATACTTTGG+TGG + chr4_3:6997626-6997645 Msa0626940:intron 35.0%
TCTCATTTGATGCACTAAAC+TGG + chr4_3:6997663-6997682 Msa0626940:intron 35.0%
ATTTGATGCACTAAACTGGA+TGG + chr4_3:6997667-6997686 Msa0626940:intron 35.0%
! GCTACTCTCTGATTTTCTTT+GGG + chr4_3:6997704-6997723 Msa0626940:intron 35.0%
! CTACTCTCTGATTTTCTTTG+GGG + chr4_3:6997705-6997724 Msa0626940:intron 35.0%
! TACTCTCTGATTTTCTTTGG+GGG + chr4_3:6997706-6997725 Msa0626940:intron 35.0%
! TTCTTTGGGGGACTAATTAA+TGG + chr4_3:6997718-6997737 Msa0626940:intron 35.0%
!!! TAGGTTTTTTCTATGCTACC+AGG + chr4_3:6997751-6997770 Msa0626940:intron 35.0%
! TTTTCTATGCTACCAGGATT+TGG + chr4_3:6997757-6997776 Msa0626940:CDS 35.0%
! TGCCTTTTGGTACTAATTCA+TGG - chr4_3:6997783-6997802 None:intergenic 35.0%
TGAATTAGTACCAAAAGGCA+AGG + chr4_3:6997783-6997802 Msa0626940:CDS 35.0%
! TGTAACGCTTAATTTTTGCC+TGG - chr4_3:6997819-6997838 None:intergenic 35.0%
TAAGCGTTACATGACAATGA+TGG + chr4_3:6997828-6997847 Msa0626940:CDS 35.0%
ATGGACTCAATGACAAATGA+AGG + chr4_3:6997847-6997866 Msa0626940:CDS 35.0%
AGGGCTTAAAATACCAAAGA+AGG + chr4_3:6998137-6998156 Msa0626940:CDS 35.0%
GGGCTTAAAATACCAAAGAA+GGG + chr4_3:6998138-6998157 Msa0626940:CDS 35.0%
GACATTCATGTTTCGAGATA+AGG - chr4_3:6998175-6998194 None:intergenic 35.0%
CTAAAGCAAATTGGAGGAAT+GGG + chr4_3:6998228-6998247 Msa0626940:CDS 35.0%
ACAAAGCTTGATGAAATCGA+TGG + chr4_3:6998257-6998276 Msa0626940:CDS 35.0%
CAAAGCTTGATGAAATCGAT+GGG + chr4_3:6998258-6998277 Msa0626940:CDS 35.0%
GAAATCGATGGGATCTAATA+AGG + chr4_3:6998269-6998288 Msa0626940:CDS 35.0%
GGATCTAATAAGGACATGAT+GGG + chr4_3:6998279-6998298 Msa0626940:CDS 35.0%
CTGCCAAGGTAATTAACTAA+TGG - chr4_3:6998483-6998502 None:intergenic 35.0%
! TTTGGGGATTTAGGGTTTGA+TGG - chr4_3:6991235-6991254 None:intergenic 40.0%
! AATCTTGATGATCTTGCTGC+TGG + chr4_3:6991466-6991485 Msa0626940:CDS 40.0%
!! GAGGAAAAAGCGTTACTTGT+TGG - chr4_3:6991513-6991532 None:intergenic 40.0%
! TCCGACTAAAAGTGAGTTGA+AGG + chr4_3:6991665-6991684 Msa0626940:intron 40.0%
GAAAAAGGACATAAGGAGAG+AGG - chr4_3:6991842-6991861 None:intergenic 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + chr4_3:6992436-6992455 Msa0626940:intron 40.0%
!! GACATGTTTTGGATGTTCTC+TGG - chr4_3:6992811-6992830 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr4_3:6992938-6992957 Msa0626940:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr4_3:6992939-6992958 Msa0626940:intron 40.0%
CGTACTATACACCAAATGGT+GGG + chr4_3:6992970-6992989 Msa0626940:intron 40.0%
!! TACAATTTCAGGCACCGAAT+TGG + chr4_3:6993251-6993270 Msa0626940:intron 40.0%
!! ACAATTTCAGGCACCGAATT+GGG + chr4_3:6993252-6993271 Msa0626940:intron 40.0%
AAAAGAGTGAACCCCCAATT+CGG - chr4_3:6993268-6993287 None:intergenic 40.0%
GTACTTTGATCTATGAGGCA+TGG + chr4_3:6993398-6993417 Msa0626940:intron 40.0%
TGTAAGCTGTATTCGCAACA+TGG + chr4_3:6993568-6993587 Msa0626940:intron 40.0%
GTAAGCTGTATTCGCAACAT+GGG + chr4_3:6993569-6993588 Msa0626940:intron 40.0%
GACATGTCATACTCTACCTT+TGG + chr4_3:6993625-6993644 Msa0626940:intron 40.0%
GTTTATCCAGGCGAACTTTA+AGG - chr4_3:6993732-6993751 None:intergenic 40.0%
AGCATTCGTAAGCAAAAGAG+AGG - chr4_3:6994030-6994049 None:intergenic 40.0%
CAATGAGCTCTGCAATATCT+TGG + chr4_3:6994278-6994297 Msa0626940:CDS 40.0%
!! GTCATGTTCGTTGGTTTACA+AGG + chr4_3:6994348-6994367 Msa0626940:CDS 40.0%
CTAAGATCCCTTTCTATGGA+AGG + chr4_3:6994769-6994788 Msa0626940:CDS 40.0%
CTTCCCACACTTCAGAAAAA+GGG - chr4_3:6994870-6994889 None:intergenic 40.0%
ACTTCCCACACTTCAGAAAA+AGG - chr4_3:6994871-6994890 None:intergenic 40.0%
AAGTGTGGGAAGTGAAATGA+TGG + chr4_3:6994878-6994897 Msa0626940:intron 40.0%
! GAGTTAGTCAACTCCTTTTC+AGG + chr4_3:6995211-6995230 Msa0626940:intron 40.0%
!! CACTCTGAAATTGTAGGTGT+CGG + chr4_3:6995567-6995586 Msa0626940:intron 40.0%
!! ACTCTGAAATTGTAGGTGTC+GGG + chr4_3:6995568-6995587 Msa0626940:intron 40.0%
CAAGGTGGTAATCCAAAATC+AGG + chr4_3:6995732-6995751 Msa0626940:intron 40.0%
AATTCATCCCCTGAAGTTGT+AGG - chr4_3:6995803-6995822 None:intergenic 40.0%
TACAACTTCAGGGGATGAAT+TGG + chr4_3:6995802-6995821 Msa0626940:intron 40.0%
ACAACTTCAGGGGATGAATT+GGG + chr4_3:6995803-6995822 Msa0626940:intron 40.0%
ACAACTGTACATGCTTCTTC+TGG - chr4_3:6995928-6995947 None:intergenic 40.0%
! GAGTTAGTCAACTCCTTTTC+AGG + chr4_3:6995211-6995230 Msa0626940:intron 40.0%
CTCCCTAGAAAACCAAAATG+TGG - chr4_3:6995244-6995263 None:intergenic 40.0%
! TTTGGGATAATGAATCACCG+TGG + chr4_3:6996085-6996104 Msa0626940:intron 40.0%
GGCAAGAAGACTAAGGAAAT+TGG + chr4_3:6996238-6996257 Msa0626940:intron 40.0%
AGATCCTGTGAAAATTGCTG+TGG + chr4_3:6996586-6996605 Msa0626940:CDS 40.0%
TGAAGAAATGCGCCAAGTTT+CGG + chr4_3:6996694-6996713 Msa0626940:CDS 40.0%
!! TGGCTTTTGGAAACAGACAT+TGG - chr4_3:6996753-6996772 None:intergenic 40.0%
AAAAATGGATGGCCATGCAA+AGG + chr4_3:6996915-6996934 Msa0626940:CDS 40.0%
AAAATGGATGGCCATGCAAA+GGG + chr4_3:6996916-6996935 Msa0626940:CDS 40.0%
AAGAGTCCCGTCATATTCAT+TGG + chr4_3:6997132-6997151 Msa0626940:CDS 40.0%
CCAGTTCCAATGAATATGAC+GGG - chr4_3:6997141-6997160 None:intergenic 40.0%
CCTAATAGACGACTGACAAA+TGG - chr4_3:6997201-6997220 None:intergenic 40.0%
CCATTTGTCAGTCGTCTATT+AGG + chr4_3:6997198-6997217 Msa0626940:CDS 40.0%
GCGTATCCTAAAACCAATGT+TGG - chr4_3:6997307-6997326 None:intergenic 40.0%
GATCCATTGGAACAACTTCA+TGG - chr4_3:6997439-6997458 None:intergenic 40.0%
TGCAGCTTATTAAGCAGTTC+AGG - chr4_3:6997467-6997486 None:intergenic 40.0%
CTGCTTAATAAGCTGCAAGA+AGG + chr4_3:6997470-6997489 Msa0626940:CDS 40.0%
AAGAAGGAACCTTTACCTTG+AGG + chr4_3:6997486-6997505 Msa0626940:CDS 40.0%
ATTTACATTTGACCCCCACT+TGG + chr4_3:6997607-6997626 Msa0626940:intron 40.0%
! AGTATTTTTCCACCAAGTGG+GGG - chr4_3:6997622-6997641 None:intergenic 40.0%
! GGCTACTCTCTGATTTTCTT+TGG + chr4_3:6997703-6997722 Msa0626940:intron 40.0%
ACTAATTCATGGCCAAATCC+TGG - chr4_3:6997772-6997791 None:intergenic 40.0%
GGCCATGAATTAGTACCAAA+AGG + chr4_3:6997778-6997797 Msa0626940:CDS 40.0%
TTGCTATCGTGTTTCAGAGT+TGG + chr4_3:6997981-6998000 Msa0626940:intron 40.0%
GTGACTCATTCATGAGCTTT+GGG - chr4_3:6998017-6998036 None:intergenic 40.0%
CAAAGCTCATGAATGAGTCA+CGG + chr4_3:6998016-6998035 Msa0626940:CDS 40.0%
TCGACAAGTTAGGGAAGTAA+TGG + chr4_3:6998065-6998084 Msa0626940:CDS 40.0%
! TAGGGAAGTAATGGAGATGA+TGG + chr4_3:6998074-6998093 Msa0626940:CDS 40.0%
GAACTCATTTCTCCCTTCTT+TGG - chr4_3:6998153-6998172 None:intergenic 40.0%
TTTGCTTTAGCATCTGTGGA+GGG - chr4_3:6998218-6998237 None:intergenic 40.0%
ATTTGCTTTAGCATCTGTGG+AGG - chr4_3:6998219-6998238 None:intergenic 40.0%
! CCAATTTGCTTTAGCATCTG+TGG - chr4_3:6998222-6998241 None:intergenic 40.0%
CCACAGATGCTAAAGCAAAT+TGG + chr4_3:6998219-6998238 Msa0626940:CDS 40.0%
CAGATGCTAAAGCAAATTGG+AGG + chr4_3:6998222-6998241 Msa0626940:CDS 40.0%
GCTAAAGCAAATTGGAGGAA+TGG + chr4_3:6998227-6998246 Msa0626940:CDS 40.0%
GGGATCTAATAAGGACATGA+TGG + chr4_3:6998278-6998297 Msa0626940:CDS 40.0%
! AAGGACATGATGGGAATGTT+TGG + chr4_3:6998288-6998307 Msa0626940:CDS 40.0%
GAACTCTTATGAAGCACAAG+AGG - chr4_3:6998378-6998397 None:intergenic 40.0%
GGGCCATTAGTTAATTACCT+TGG + chr4_3:6998477-6998496 Msa0626940:three_prime_UTR 40.0%
TAAATCGAACTTCTCTCCAC+AGG + chr4_3:6998642-6998661 Msa0626940:three_prime_UTR 40.0%
AAGAGTTTCTTCGACGCGAA+TGG - chr4_3:6991186-6991205 None:intergenic 45.0%
AAGATGGTGCTCGCAGATTT+AGG + chr4_3:6991283-6991302 Msa0626940:exon 45.0%
! ATTCTCTAGAGGGGTAACCT+TGG + chr4_3:6992858-6992877 Msa0626940:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG + chr4_3:6992894-6992913 Msa0626940:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_3:6992934-6992953 None:intergenic 45.0%
GCTGCGTACTATACACCAAA+TGG + chr4_3:6992966-6992985 Msa0626940:intron 45.0%
GCGTACTATACACCAAATGG+TGG + chr4_3:6992969-6992988 Msa0626940:intron 45.0%
!! CAATTTCAGGCACCGAATTG+GGG + chr4_3:6993253-6993272 Msa0626940:intron 45.0%
!! AATTTCAGGCACCGAATTGG+GGG + chr4_3:6993254-6993273 Msa0626940:intron 45.0%
ATGCATCCTTAAAGTTCGCC+TGG + chr4_3:6993723-6993742 Msa0626940:intron 45.0%
!! CGTTGCCGTGTTTTTGTTAG+TGG + chr4_3:6994151-6994170 Msa0626940:intron 45.0%
CTCTGCAATATCTTGGATCC+TGG + chr4_3:6994285-6994304 Msa0626940:CDS 45.0%
!!! CCTTTTTTGGGAGTGAAAGC+AGG - chr4_3:6994315-6994334 None:intergenic 45.0%
CCTGCTTTCACTCCCAAAAA+AGG + chr4_3:6994312-6994331 Msa0626940:CDS 45.0%
GCTAGTGTTGTCATGTTCGT+TGG + chr4_3:6994339-6994358 Msa0626940:CDS 45.0%
GTATCTGCACATACTAGAGC+TGG - chr4_3:6994702-6994721 None:intergenic 45.0%
TGTGCAGATACATTCAGAGC+TGG + chr4_3:6994711-6994730 Msa0626940:CDS 45.0%
TGTGGGAAGTGAAATGATGG+AGG + chr4_3:6994881-6994900 Msa0626940:intron 45.0%
CAACTTCAGGGGATGAATTG+GGG + chr4_3:6995804-6995823 Msa0626940:intron 45.0%
TAATGAATCACCGTGGACAG+TGG + chr4_3:6996092-6996111 Msa0626940:intron 45.0%
CTAGAACATTTGGTAGGAGG+GGG - chr4_3:6996181-6996200 None:intergenic 45.0%
GCTAGAACATTTGGTAGGAG+GGG - chr4_3:6996182-6996201 None:intergenic 45.0%
GGCTAGAACATTTGGTAGGA+GGG - chr4_3:6996183-6996202 None:intergenic 45.0%
AGGCTAGAACATTTGGTAGG+AGG - chr4_3:6996184-6996203 None:intergenic 45.0%
!!! TTTATTTTTGCGGTGAGGGG+AGG + chr4_3:6996446-6996465 Msa0626940:intron 45.0%
! CCTTCCACAGCAATTTTCAC+AGG - chr4_3:6996593-6996612 None:intergenic 45.0%
CCTGTGAAAATTGCTGTGGA+AGG + chr4_3:6996590-6996609 Msa0626940:CDS 45.0%
GAAAATTGCTGTGGAAGGTG+TGG + chr4_3:6996595-6996614 Msa0626940:CDS 45.0%
ATACCGTTGCTTCCGAAACT+TGG - chr4_3:6996709-6996728 None:intergenic 45.0%
!! CATGGATAGCAGTATTGGTC+AGG + chr4_3:6996831-6996850 Msa0626940:CDS 45.0%
TATCACGACACAGCAAACAC+AGG - chr4_3:6997036-6997055 None:intergenic 45.0%
CCCGTCATATTCATTGGAAC+TGG + chr4_3:6997138-6997157 Msa0626940:CDS 45.0%
CATTGGAACTGGAGAACACA+TGG + chr4_3:6997149-6997168 Msa0626940:CDS 45.0%
! TTTGGTTTCTGTCCCGACAT+TGG + chr4_3:6997229-6997248 Msa0626940:intron 45.0%
!!! TCTGTCCCGACATTGGTTTT+AGG + chr4_3:6997236-6997255 Msa0626940:intron 45.0%
!! TCCAGTCGGTATTTTGGATC+AGG + chr4_3:6997380-6997399 Msa0626940:intron 45.0%
AGTTCAGGCTGTTGATCCAT+TGG - chr4_3:6997452-6997471 None:intergenic 45.0%
CTGCTCGTACATAATCCTCA+AGG - chr4_3:6997504-6997523 None:intergenic 45.0%
ACTGGATGGCTGTGTATTGA+AGG + chr4_3:6997681-6997700 Msa0626940:intron 45.0%
CTGGATGGCTGTGTATTGAA+GGG + chr4_3:6997682-6997701 Msa0626940:intron 45.0%
AGTACCAAAAGGCAAGGATC+AGG + chr4_3:6997789-6997808 Msa0626940:CDS 45.0%
CGTGACTCATTCATGAGCTT+TGG - chr4_3:6998018-6998037 None:intergenic 45.0%
! AGGTTCTGGTCGACAAGTTA+GGG + chr4_3:6998056-6998075 Msa0626940:CDS 45.0%
ACAAGCGTCTCGCAAAGATA+TGG + chr4_3:6998103-6998122 Msa0626940:CDS 45.0%
AAGCAAATTGGAGGAATGGG+TGG + chr4_3:6998231-6998250 Msa0626940:CDS 45.0%
AGCAAATTGGAGGAATGGGT+GGG + chr4_3:6998232-6998251 Msa0626940:CDS 45.0%
! GACATGATGGGAATGTTTGG+CGG + chr4_3:6998291-6998310 Msa0626940:CDS 45.0%
TCTGACCGCAGAAATCTCAA+TGG + chr4_3:6998456-6998475 Msa0626940:three_prime_UTR 45.0%
CTGACCGCAGAAATCTCAAT+GGG + chr4_3:6998457-6998476 Msa0626940:three_prime_UTR 45.0%
ATGGCCCATTGAGATTTCTG+CGG - chr4_3:6998464-6998483 None:intergenic 45.0%
TGAGTATGAACCTTCTCCTG+TGG - chr4_3:6998661-6998680 None:intergenic 45.0%
!!! TTCAATTTTTTTATTTAATT+TGG + chr4_3:6991537-6991556 Msa0626940:intron 5.0%
!! AAATTATATTAAACATAATA+GGG - chr4_3:6997570-6997589 None:intergenic 5.0%
!! TAAATTATATTAAACATAAT+AGG - chr4_3:6997571-6997590 None:intergenic 5.0%
!!! TTTTTATTTTTTGTATTATT+TGG + chr4_3:6997895-6997914 Msa0626940:intron 5.0%
!!! TTTTATTTTTTGTATTATTT+GGG + chr4_3:6997896-6997915 Msa0626940:intron 5.0%
ATGGTGCTCGCAGATTTAGG+AGG + chr4_3:6991286-6991305 Msa0626940:CDS 50.0%
TGGTGCTCGCAGATTTAGGA+GGG + chr4_3:6991287-6991306 Msa0626940:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4_3:6992878-6992897 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG + chr4_3:6992900-6992919 Msa0626940:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG + chr4_3:6992901-6992920 Msa0626940:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG - chr4_3:6992912-6992931 None:intergenic 50.0%
AGCTGTATTCGCAACATGGG+AGG + chr4_3:6993572-6993591 Msa0626940:intron 50.0%
GTGTTCAAGGGAGCTTCCAA+AGG - chr4_3:6993644-6993663 None:intergenic 50.0%
AATGAATCGGCCCCTTCTCA+TGG - chr4_3:6995085-6995104 None:intergenic 50.0%
! GAGAAGGGGCCGATTCATTT+CGG + chr4_3:6995086-6995105 Msa0626940:intron 50.0%
! GACCCGATTTTGAATGGCGA+CGG + chr4_3:6995627-6995646 Msa0626940:intron 50.0%
! ACCCGATTTTGAATGGCGAC+GGG + chr4_3:6995628-6995647 Msa0626940:intron 50.0%
TGCCCGTCGCCATTCAAAAT+CGG - chr4_3:6995633-6995652 None:intergenic 50.0%
!!! TGGTCAGGCTGCTTTTGATC+AGG + chr4_3:6996846-6996865 Msa0626940:CDS 50.0%
GCCTGATCCAAAATACCGAC+TGG - chr4_3:6997384-6997403 None:intergenic 50.0%
!! TCGGTATTTTGGATCAGGCC+AGG + chr4_3:6997385-6997404 Msa0626940:intron 50.0%
!! CGGTATTTTGGATCAGGCCA+GGG + chr4_3:6997386-6997405 Msa0626940:intron 50.0%
TACATTTGACCCCCACTTGG+TGG + chr4_3:6997610-6997629 Msa0626940:intron 50.0%
! CTGTCCTGATCCTTGCCTTT+TGG - chr4_3:6997796-6997815 None:intergenic 50.0%
ATGCGTATAGCTCGAGGTTC+TGG + chr4_3:6998042-6998061 Msa0626940:CDS 50.0%
! GAGGTTCTGGTCGACAAGTT+AGG + chr4_3:6998055-6998074 Msa0626940:CDS 50.0%
! GAGGGAGGATTTTGCTCATG+TGG - chr4_3:6998200-6998219 None:intergenic 50.0%
! ATGATGGGAATGTTTGGCGG+CGG + chr4_3:6998294-6998313 Msa0626940:CDS 50.0%
GGCGAGCAGTAGGTTCTTAA+TGG + chr4_3:6998318-6998337 Msa0626940:exon 50.0%
GAACTTCTCTCCACAGGAGA+AGG + chr4_3:6998648-6998667 Msa0626940:three_prime_UTR 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_3:6992913-6992932 Msa0626940:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG - chr4_3:6993009-6993028 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG - chr4_3:6993010-6993029 None:intergenic 55.0%
GGAGTGAAAGCAGGCTTTCC+AGG - chr4_3:6994306-6994325 None:intergenic 55.0%
GCCCGTCGCCATTCAAAATC+GGG - chr4_3:6995632-6995651 None:intergenic 55.0%
TTGAATGGCGACGGGCAGTT+TGG + chr4_3:6995636-6995655 Msa0626940:intron 55.0%
TGTCCGACGCCTACAACTTC+AGG + chr4_3:6995791-6995810 Msa0626940:intron 55.0%
GTCCGACGCCTACAACTTCA+GGG + chr4_3:6995792-6995811 Msa0626940:intron 55.0%
TCCGACGCCTACAACTTCAG+GGG + chr4_3:6995793-6995812 Msa0626940:intron 55.0%
TCCCCTGAAGTTGTAGGCGT+CGG - chr4_3:6995797-6995816 None:intergenic 55.0%
CACAGTCTCACCACTGTCCA+CGG - chr4_3:6996105-6996124 None:intergenic 55.0%
GCGCCAAGTTTCGGAAGCAA+CGG + chr4_3:6996703-6996722 Msa0626940:CDS 55.0%
ATGGATGGCCATGCAAAGGG+TGG + chr4_3:6996919-6996938 Msa0626940:CDS 55.0%
TGAACCCAGACAAGTCTCCC+TGG - chr4_3:6997406-6997425 None:intergenic 55.0%
TAAGATGGGTCCCATGAGCG+AGG + chr4_3:6997538-6997557 Msa0626940:CDS 55.0%
AGGGGGTTAACCTCGCTCAT+GGG - chr4_3:6997551-6997570 None:intergenic 55.0%
TAGGGGGTTAACCTCGCTCA+TGG - chr4_3:6997552-6997571 None:intergenic 55.0%
CGGATGATGCGTATAGCTCG+AGG + chr4_3:6998036-6998055 Msa0626940:CDS 55.0%
GCTTTAGCATCTGTGGAGGG+AGG - chr4_3:6998215-6998234 None:intergenic 55.0%
TAATGGCTTATGCGCTGCCG+AGG + chr4_3:6998335-6998354 Msa0626940:three_prime_UTR 55.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr4_3:6992867-6992886 Msa0626940:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr4_3:6992982-6993001 Msa0626940:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr4_3:6992997-6993016 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr4_3:6992998-6993017 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr4_3:6992997-6993016 Msa0626940:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr4_3:6992998-6993017 Msa0626940:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr4_3:6993014-6993033 Msa0626940:intron 60.0%
CGTGGACAGTGGTGAGACTG+TGG + chr4_3:6996103-6996122 Msa0626940:intron 60.0%
GATGGCCATGCAAAGGGTGG+TGG + chr4_3:6996922-6996941 Msa0626940:CDS 60.0%
TCAGGCCAGGGAGACTTGTC+TGG + chr4_3:6997398-6997417 Msa0626940:intron 60.0%
CAGGCCAGGGAGACTTGTCT+GGG + chr4_3:6997399-6997418 Msa0626940:intron 60.0%
AGGCAAGGATCAGGACAGCC+AGG + chr4_3:6997798-6997817 Msa0626940:CDS 60.0%
ATGGGAATGTTTGGCGGCGG+TGG + chr4_3:6998297-6998316 Msa0626940:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr4_3:6992984-6993003 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr4_3:6992999-6993018 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr4_3:6993003-6993022 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr4_3:6993004-6993023 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr4_3:6993015-6993034 Msa0626940:intron 65.0%
GCGCACCACCACCCTTTGCA+TGG - chr4_3:6996930-6996949 None:intergenic 65.0%
TGGCGGCGGTGGCGAGCAGT+AGG + chr4_3:6998308-6998327 Msa0626940:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6991167 6998682 6991167 ID=Msa0626940;Name=Msa0626940
chr4_3 mRNA 6991167 6998682 6991167 ID=Msa0626940-mRNA-1;Parent=Msa0626940;Name=Msa0626940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=119|1|1|1|1|1|9|353|496
chr4_3 exon 6991167 6991516 6991167 ID=Msa0626940-mRNA-1:exon:2036;Parent=Msa0626940-mRNA-1
chr4_3 exon 6994270 6994369 6994270 ID=Msa0626940-mRNA-1:exon:2037;Parent=Msa0626940-mRNA-1
chr4_3 exon 6994637 6994790 6994637 ID=Msa0626940-mRNA-1:exon:2038;Parent=Msa0626940-mRNA-1
chr4_3 exon 6996574 6996724 6996574 ID=Msa0626940-mRNA-1:exon:2039;Parent=Msa0626940-mRNA-1
chr4_3 exon 6996808 6996956 6996808 ID=Msa0626940-mRNA-1:exon:2040;Parent=Msa0626940-mRNA-1
chr4_3 exon 6997119 6997219 6997119 ID=Msa0626940-mRNA-1:exon:2041;Parent=Msa0626940-mRNA-1
chr4_3 exon 6997402 6997559 6997402 ID=Msa0626940-mRNA-1:exon:2042;Parent=Msa0626940-mRNA-1
chr4_3 exon 6997754 6997868 6997754 ID=Msa0626940-mRNA-1:exon:2043;Parent=Msa0626940-mRNA-1
chr4_3 exon 6997998 6998682 6997998 ID=Msa0626940-mRNA-1:exon:2044;Parent=Msa0626940-mRNA-1
chr4_3 five_prime_UTR 6991167 6991285 6991167 ID=Msa0626940-mRNA-1:five_prime_utr;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6991286 6991516 6991286 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6994270 6994369 6994270 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6994637 6994790 6994637 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6996574 6996724 6996574 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6996808 6996956 6996808 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6997119 6997219 6997119 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6997402 6997559 6997402 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6997754 6997868 6997754 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 CDS 6997998 6998329 6997998 ID=Msa0626940-mRNA-1:cds;Parent=Msa0626940-mRNA-1
chr4_3 three_prime_UTR 6998330 6998682 6998330 ID=Msa0626940-mRNA-1:three_prime_utr;Parent=Msa0626940-mRNA-1
Gene Sequence

>Msa0626940

ATGGTGCTCGCAGATTTAGGAGGGAGCATTACGCGTGCTCTAAAGCAGATGAGCAATGCAACAATCATCGATGAAAAAGTATTGAACGAATGTCTCAATGAAATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTTAGAGATATGCAAACCAATATTAAGAAGATTGTTAATCTTGATGATCTTGCTGCTGGTCATAATAAACGTAGAATCATCCAACAAGCTGTGTTCAATGAGCTCTGCAATATCTTGGATCCTGGAAAGCCTGCTTTCACTCCCAAAAAAGGAAAAGCTAGTGTTGTCATGTTCGTTGGTTTACAAGGATCTGGGAAAACCACTACTTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCGTTTGATCAGTTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATTATCACAAAAATGGATGGCCATGCAAAGGGTGGTGGTGCGCTTAGTGCTGTTGCGGCTACAAAGAGTCCCGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCCAGGGAGACTTGTCTGGGTTCATGAACAAAATCCATGAAGTTGTTCCAATGGATCAACAGCCTGAACTGCTTAATAAGCTGCAAGAAGGAACCTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAGATGGGTCCCATGAGCGAGGTTTTTTCTATGCTACCAGGATTTGGCCATGAATTAGTACCAAAAGGCAAGGATCAGGACAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGGATGATGCGTATAGCTCGAGGTTCTGGTCGACAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAGCGTCTCGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAGGGAGAAATGAGTTCCTTATCTCGAAACATGAATGTCAACCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGAATGGGTGGGTTACAAAGCTTGATGAAATCGATGGGATCTAATAAGGACATGATGGGAATGTTTGGCGGCGGTGGCGAGCAGTAG
Protein sequence

>Msa0626940

MVLADLGGSITRALKQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFGHELVPKGKDQDSQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSSLSRNMNVNHMSKILPPQMLKQIGGMGGLQSLMKSMGSNKDMMGMFGGGGEQ*