Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103640 | XP_003588379.2 | 94.345 | 336 | 5 | 2 | 3 | 324 | 253 | 588 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103640 | sp|Q9FFN2|GLYT3_ARATH | 44.179 | 335 | 166 | 5 | 2 | 319 | 181 | 511 | 2.74e-91 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103640 | G7IB43 | 94.345 | 336 | 5 | 2 | 3 | 324 | 253 | 588 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002020 | Msa0103640 | 0.930463 | 1.580238e-93 | -8.615850e-47 |
| Msa0058730 | Msa0103640 | 0.926063 | 7.837028e-91 | -8.615850e-47 |
| Msa0103620 | Msa0103640 | 0.851252 | 1.001786e-60 | -8.615850e-47 |
| Msa0103640 | Msa0149990 | 0.941755 | 2.392219e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103640 | MtrunA17_Chr1g0146181 | 94.345 | 336 | 5 | 2 | 3 | 324 | 253 | 588 | 0.0 | 655 |
| Msa0103640 | MtrunA17_Chr3g0140131 | 78.274 | 336 | 59 | 2 | 3 | 324 | 260 | 595 | 0.0 | 555 |
| Msa0103640 | MtrunA17_Chr7g0265381 | 76.261 | 337 | 66 | 2 | 2 | 324 | 39 | 375 | 0.0 | 538 |
| Msa0103640 | MtrunA17_Chr3g0140141 | 63.253 | 332 | 108 | 2 | 3 | 320 | 218 | 549 | 1.00e-160 | 460 |
| Msa0103640 | MtrunA17_Chr8g0390121 | 64.970 | 334 | 102 | 3 | 3 | 321 | 275 | 608 | 3.06e-159 | 458 |
| Msa0103640 | MtrunA17_Chr1g0197381 | 62.997 | 327 | 111 | 3 | 3 | 319 | 218 | 544 | 8.36e-151 | 434 |
| Msa0103640 | MtrunA17_Chr4g0055991 | 57.988 | 338 | 122 | 5 | 2 | 319 | 195 | 532 | 2.31e-134 | 392 |
| Msa0103640 | MtrunA17_Chr7g0265451 | 44.910 | 334 | 163 | 5 | 3 | 319 | 182 | 511 | 9.04e-98 | 298 |
| Msa0103640 | MtrunA17_Chr3g0131051 | 44.012 | 334 | 166 | 5 | 3 | 319 | 158 | 487 | 1.19e-96 | 294 |
| Msa0103640 | MtrunA17_Chr7g0265461 | 45.509 | 334 | 161 | 5 | 3 | 319 | 65 | 394 | 5.66e-96 | 290 |
| Msa0103640 | MtrunA17_Chr1g0179651 | 43.750 | 336 | 167 | 6 | 2 | 319 | 4 | 335 | 2.11e-92 | 278 |
| Msa0103640 | MtrunA17_Chr3g0119721 | 44.643 | 336 | 165 | 5 | 1 | 319 | 9 | 340 | 4.85e-91 | 275 |
| Msa0103640 | MtrunA17_Chr3g0120131 | 44.910 | 334 | 163 | 5 | 3 | 319 | 149 | 478 | 3.38e-90 | 277 |
| Msa0103640 | MtrunA17_Chr3g0137491 | 43.027 | 337 | 170 | 6 | 2 | 319 | 54 | 387 | 1.20e-84 | 260 |
| Msa0103640 | MtrunA17_Chr4g0064471 | 39.589 | 341 | 179 | 6 | 2 | 319 | 130 | 466 | 1.90e-78 | 247 |
| Msa0103640 | MtrunA17_Chr4g0064411 | 40.116 | 344 | 171 | 8 | 2 | 319 | 124 | 458 | 5.92e-75 | 238 |
| Msa0103640 | MtrunA17_Chr4g0064461 | 37.026 | 343 | 185 | 9 | 2 | 319 | 125 | 461 | 3.03e-66 | 215 |
| Msa0103640 | MtrunA17_Chr5g0411991 | 34.877 | 324 | 190 | 9 | 7 | 315 | 90 | 407 | 1.80e-62 | 204 |
| Msa0103640 | MtrunA17_Chr7g0253441 | 33.721 | 344 | 186 | 11 | 1 | 318 | 149 | 476 | 1.25e-52 | 180 |
| Msa0103640 | MtrunA17_Chr5g0421571 | 33.166 | 199 | 113 | 8 | 7 | 191 | 143 | 335 | 1.17e-23 | 99.4 |
| Msa0103640 | MtrunA17_Chr8g0385671 | 26.012 | 346 | 205 | 13 | 10 | 314 | 49 | 384 | 1.15e-22 | 97.4 |
| Msa0103640 | MtrunA17_Chr8g0385651 | 25.360 | 347 | 206 | 13 | 10 | 314 | 49 | 384 | 1.50e-21 | 94.4 |
| Msa0103640 | MtrunA17_Chr4g0028201 | 26.616 | 263 | 154 | 8 | 84 | 314 | 189 | 444 | 1.29e-17 | 83.2 |
| Msa0103640 | MtrunA17_Chr2g0320251 | 26.941 | 219 | 125 | 6 | 84 | 273 | 171 | 383 | 6.05e-17 | 81.3 |
| Msa0103640 | MtrunA17_Chr7g0254391 | 30.769 | 247 | 129 | 11 | 94 | 314 | 240 | 470 | 2.98e-16 | 79.3 |
| Msa0103640 | MtrunA17_Chr3g0092341 | 26.953 | 256 | 156 | 8 | 80 | 314 | 225 | 470 | 4.77e-15 | 75.5 |
| Msa0103640 | MtrunA17_Chr6g0460631 | 27.500 | 240 | 146 | 7 | 94 | 314 | 235 | 465 | 9.57e-15 | 74.7 |
| Msa0103640 | MtrunA17_Chr3g0122631 | 25.000 | 260 | 151 | 8 | 84 | 314 | 156 | 400 | 1.54e-14 | 73.9 |
| Msa0103640 | MtrunA17_Chr4g0043801 | 24.719 | 267 | 161 | 9 | 68 | 315 | 196 | 441 | 4.04e-13 | 69.7 |
| Msa0103640 | MtrunA17_Chr1g0159421 | 27.052 | 329 | 194 | 16 | 1 | 292 | 67 | 386 | 3.27e-12 | 67.0 |
| Msa0103640 | MtrunA17_Chr1g0200871 | 24.904 | 261 | 147 | 10 | 78 | 298 | 180 | 431 | 5.09e-12 | 66.6 |
| Msa0103640 | MtrunA17_Chr8g0377331 | 24.419 | 258 | 155 | 9 | 84 | 314 | 154 | 398 | 1.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103640 | AT5G25820.1 | 68.955 | 335 | 87 | 5 | 3 | 320 | 316 | 650 | 2.00e-170 | 488 |
| Msa0103640 | AT4G32790.1 | 67.868 | 333 | 92 | 3 | 3 | 320 | 259 | 591 | 1.16e-168 | 482 |
| Msa0103640 | AT4G32790.3 | 67.868 | 333 | 92 | 3 | 3 | 320 | 259 | 591 | 1.16e-168 | 482 |
| Msa0103640 | AT4G32790.2 | 67.868 | 333 | 92 | 3 | 3 | 320 | 259 | 591 | 1.16e-168 | 482 |
| Msa0103640 | AT5G19670.1 | 66.269 | 335 | 98 | 3 | 3 | 322 | 273 | 607 | 6.71e-163 | 468 |
| Msa0103640 | AT5G19670.2 | 66.269 | 335 | 98 | 3 | 3 | 322 | 273 | 607 | 6.71e-163 | 468 |
| Msa0103640 | AT5G37000.1 | 60.778 | 334 | 115 | 4 | 1 | 319 | 216 | 548 | 8.90e-148 | 427 |
| Msa0103640 | AT5G11610.1 | 60.355 | 338 | 112 | 6 | 3 | 322 | 212 | 545 | 3.62e-144 | 418 |
| Msa0103640 | AT4G16745.1 | 57.738 | 336 | 122 | 5 | 2 | 317 | 191 | 526 | 8.18e-135 | 394 |
| Msa0103640 | AT4G16745.2 | 56.135 | 326 | 123 | 5 | 2 | 307 | 191 | 516 | 2.49e-123 | 366 |
| Msa0103640 | AT5G03795.1 | 44.179 | 335 | 166 | 5 | 2 | 319 | 181 | 511 | 2.79e-92 | 284 |
| Msa0103640 | AT5G11610.2 | 55.274 | 237 | 85 | 5 | 3 | 222 | 212 | 444 | 2.28e-84 | 262 |
| Msa0103640 | AT5G25310.1 | 43.620 | 337 | 166 | 7 | 3 | 319 | 143 | 475 | 8.32e-84 | 261 |
| Msa0103640 | AT3G07620.1 | 42.687 | 335 | 170 | 5 | 3 | 319 | 124 | 454 | 5.79e-83 | 258 |
| Msa0103640 | AT5G20260.1 | 39.940 | 333 | 176 | 5 | 7 | 319 | 1 | 329 | 2.95e-79 | 245 |
| Msa0103640 | AT5G20260.3 | 39.940 | 333 | 176 | 5 | 7 | 319 | 28 | 356 | 5.45e-79 | 245 |
| Msa0103640 | AT5G20260.2 | 39.823 | 339 | 178 | 6 | 2 | 319 | 128 | 461 | 2.06e-78 | 247 |
| Msa0103640 | AT5G11130.2 | 40.060 | 332 | 176 | 6 | 7 | 319 | 1 | 328 | 1.56e-77 | 241 |
| Msa0103640 | AT5G11130.1 | 39.883 | 341 | 174 | 7 | 2 | 319 | 140 | 472 | 2.98e-77 | 244 |
| Msa0103640 | AT3G42180.4 | 37.168 | 339 | 183 | 5 | 7 | 319 | 1 | 335 | 7.72e-75 | 234 |
| Msa0103640 | AT3G42180.1 | 36.919 | 344 | 187 | 5 | 2 | 319 | 125 | 464 | 7.30e-74 | 235 |
| Msa0103640 | AT5G33290.1 | 38.841 | 345 | 179 | 7 | 2 | 319 | 155 | 494 | 6.32e-73 | 234 |
| Msa0103640 | AT4G38040.1 | 36.890 | 328 | 186 | 9 | 3 | 315 | 96 | 417 | 2.69e-64 | 209 |
| Msa0103640 | AT4G38040.2 | 34.405 | 311 | 180 | 10 | 3 | 295 | 96 | 400 | 6.39e-51 | 174 |
| Msa0103640 | AT5G11610.3 | 57.522 | 113 | 38 | 2 | 3 | 105 | 212 | 324 | 5.95e-37 | 135 |
| Msa0103640 | AT5G61840.1 | 26.792 | 265 | 156 | 8 | 80 | 314 | 127 | 383 | 1.38e-21 | 94.7 |
| Msa0103640 | AT1G27440.1 | 25.434 | 346 | 207 | 13 | 10 | 314 | 45 | 380 | 1.49e-21 | 94.7 |
| Msa0103640 | AT1G67410.1 | 27.917 | 240 | 152 | 7 | 93 | 314 | 170 | 406 | 2.07e-16 | 80.1 |
| Msa0103640 | AT2G28110.1 | 24.790 | 238 | 141 | 7 | 80 | 287 | 174 | 403 | 7.03e-16 | 78.6 |
| Msa0103640 | AT5G22940.1 | 26.316 | 266 | 161 | 8 | 80 | 315 | 188 | 448 | 1.43e-15 | 77.4 |
| Msa0103640 | AT5G22940.2 | 26.316 | 266 | 161 | 8 | 80 | 315 | 217 | 477 | 1.99e-15 | 77.4 |
| Msa0103640 | AT3G45400.1 | 26.971 | 241 | 146 | 7 | 94 | 314 | 206 | 436 | 6.04e-13 | 69.7 |
| Msa0103640 | AT1G21480.1 | 26.176 | 340 | 204 | 16 | 11 | 311 | 89 | 420 | 3.60e-12 | 67.4 |
| Msa0103640 | AT1G74680.1 | 33.333 | 147 | 90 | 3 | 156 | 295 | 268 | 413 | 5.08e-12 | 67.0 |
| Msa0103640 | AT3G03650.1 | 25.000 | 260 | 178 | 6 | 69 | 315 | 220 | 475 | 9.75e-12 | 66.2 |
| Msa0103640 | AT1G34270.1 | 29.480 | 173 | 108 | 6 | 133 | 298 | 259 | 424 | 1.06e-11 | 65.9 |
| Msa0103640 | AT2G35100.1 | 25.316 | 237 | 161 | 7 | 91 | 314 | 177 | 410 | 9.78e-11 | 62.8 |
Find 66 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCGAGACATTCTTTC+TGG | 0.157404 | 1_3:+10939785 | Msa0103640:CDS |
| ATATGATCCTTCACTCTATT+TGG | 0.169874 | 1_3:+10940981 | Msa0103640:CDS |
| GGAAAATTGCCAAAGGTTAA+AGG | 0.210719 | 1_3:+10940635 | Msa0103640:CDS |
| CCAATCCAAAACCTCGAAAA+AGG | 0.233899 | 1_3:-10940798 | None:intergenic |
| GTGTATATCTTTGGAGGTTT+GGG | 0.253031 | 1_3:+10941147 | Msa0103640:three_prime_UTR |
| TAAAACAGATGAGCCTTCTT+TGG | 0.253536 | 1_3:-10939661 | None:intergenic |
| TGTGTATATCTTTGGAGGTT+TGG | 0.266492 | 1_3:+10941146 | Msa0103640:three_prime_UTR |
| ATGCATGCTCCCTGCGAAAA+AGG | 0.268698 | 1_3:-10940549 | None:intergenic |
| GCGTTTCGGACGTATGTTTC+AGG | 0.278879 | 1_3:-10940470 | None:intergenic |
| AATTCAAAGTGACTTTATTA+AGG | 0.287966 | 1_3:-10941170 | None:intergenic |
| GATCCTGACATGAAAATCTT+TGG | 0.308435 | 1_3:+10940614 | Msa0103640:CDS |
| TGTGAATTTGTGTATATCTT+TGG | 0.312781 | 1_3:+10941138 | Msa0103640:three_prime_UTR |
| GGTATCTAAGCATGCTTATG+AGG | 0.380545 | 1_3:+10940897 | Msa0103640:CDS |
| CATTCTTTCTGGAACAGAAC+TGG | 0.382167 | 1_3:+10939796 | Msa0103640:CDS |
| TTACTGTTTCCTTTAACCTT+TGG | 0.391535 | 1_3:-10940644 | None:intergenic |
| TCCCAATGTTTCAATAGTAT+TGG | 0.397546 | 1_3:-10940584 | None:intergenic |
| AAAACAGATGAGCCTTCTTT+GGG | 0.402028 | 1_3:-10939660 | None:intergenic |
| AAGTACTGTATTTGTGCAAA+AGG | 0.404759 | 1_3:+10940692 | Msa0103640:CDS |
| TTTCAGGAGCTATGAATTGA+TGG | 0.405336 | 1_3:+10939501 | Msa0103640:intron |
| GGAGCATGCATGGTTATCTA+AGG | 0.412660 | 1_3:+10940561 | Msa0103640:CDS |
| TTGTTGGAATTTGAGCGTTT+CGG | 0.415130 | 1_3:-10940484 | None:intergenic |
| AGGTACAGAAGCATTTCCTT+TGG | 0.434501 | 1_3:+10940927 | Msa0103640:CDS |
| AAGAATGTCTCGCTGCAATC+AGG | 0.443627 | 1_3:-10939780 | None:intergenic |
| GCCAATACTATTGAAACATT+GGG | 0.446619 | 1_3:+10940583 | Msa0103640:CDS |
| TACGCTTGGCAAACTGCATA+AGG | 0.450418 | 1_3:+10940390 | Msa0103640:CDS |
| CTTGAAGATAAAGTAGGAAC+AGG | 0.452481 | 1_3:+10941038 | Msa0103640:three_prime_UTR |
| GTAAAAGAAGGATTTGTCTT+CGG | 0.456224 | 1_3:+10940431 | Msa0103640:CDS |
| GGCCAATACTATTGAAACAT+TGG | 0.458085 | 1_3:+10940582 | Msa0103640:CDS |
| TTCTGTCATTGTTCTGGAGA+AGG | 0.459845 | 1_3:+10940829 | Msa0103640:CDS |
| TACTTTCTATTCCAGAAAAG+AGG | 0.465367 | 1_3:+10940876 | Msa0103640:CDS |
| AAAATCGCTTCCACGACTCT+TGG | 0.467339 | 1_3:-10940731 | None:intergenic |
| AAATTATCAGATATAATAAC+CGG | 0.469771 | 1_3:-10940767 | None:intergenic |
| GCATAGATTCCGGTGAGAAA+CGG | 0.474338 | 1_3:-10939580 | None:intergenic |
| GAATTTGTGTATATCTTTGG+AGG | 0.484052 | 1_3:+10941141 | Msa0103640:three_prime_UTR |
| CTGCATTCGCCGTTTCTCAC+CGG | 0.484618 | 1_3:+10939571 | Msa0103640:CDS |
| CTTATCTATGCAGGCTCCAT+CGG | 0.485233 | 1_3:+10940358 | Msa0103640:intron |
| CTCCAGAACAATGACAGAAA+AGG | 0.491004 | 1_3:-10940825 | None:intergenic |
| TTGCCACCGAGATCCCTTGT+TGG | 0.496706 | 1_3:-10940500 | None:intergenic |
| AGAAACGGCGAATGCAGTAT+AGG | 0.502439 | 1_3:-10939565 | None:intergenic |
| ATCGGAAACAAAATTACGCT+TGG | 0.526748 | 1_3:+10940376 | Msa0103640:CDS |
| TGACAGGATTCTTGTTCCAA+AGG | 0.530529 | 1_3:-10940943 | None:intergenic |
| CCCTTCAGAAGCATAGATTC+CGG | 0.536340 | 1_3:-10939590 | None:intergenic |
| TGAAATATATCATACTTGAC+AGG | 0.536585 | 1_3:-10940959 | None:intergenic |
| ATGCGAATTCTTCACATACA+AGG | 0.538204 | 1_3:-10939716 | None:intergenic |
| AGTACTGTATTTGTGCAAAA+GGG | 0.542312 | 1_3:+10940693 | Msa0103640:CDS |
| CAAATTCCAACAAGGGATCT+CGG | 0.545491 | 1_3:+10940494 | Msa0103640:CDS |
| ACCGGAATCTATGCTTCTGA+AGG | 0.545542 | 1_3:+10939589 | Msa0103640:CDS |
| AGATAACTTGAAGATAAAGT+AGG | 0.551404 | 1_3:+10941032 | Msa0103640:exon |
| TGCAACGCCGATGTAAAAGA+AGG | 0.554573 | 1_3:+10940419 | Msa0103640:CDS |
| AGGGTGGTTTATGAAGCTAA+TGG | 0.555086 | 1_3:+10939609 | Msa0103640:CDS |
| GATATTGAATCAAGTTCTTG+TGG | 0.555739 | 1_3:-10939741 | None:intergenic |
| TTCGGACGTATGTTTCAGGA+AGG | 0.578071 | 1_3:-10940466 | None:intergenic |
| TCTTCAAGTTATCTAGCTAG+TGG | 0.584802 | 1_3:-10941023 | None:intergenic |
| AATCTTTGGAAAATTGCCAA+AGG | 0.593584 | 1_3:+10940628 | Msa0103640:CDS |
| GAATCTATGCTTCTGAAGGG+TGG | 0.610066 | 1_3:+10939593 | Msa0103640:CDS |
| TTTCAGTTCTAGGATGCTAG+AGG | 0.611661 | 1_3:+10939690 | Msa0103640:intron |
| GTATCTAAGCATGCTTATGA+GGG | 0.611871 | 1_3:+10940898 | Msa0103640:CDS |
| TCGGACGTATGTTTCAGGAA+GGG | 0.618801 | 1_3:-10940465 | None:intergenic |
| AAAGTGTATGTATACAGAGA+AGG | 0.623220 | 1_3:+10939535 | Msa0103640:CDS |
| AGTGAATAGTCCAAGAGTCG+TGG | 0.626623 | 1_3:+10940721 | Msa0103640:CDS |
| TATTGTACCAAATAGAGTGA+AGG | 0.643007 | 1_3:-10940988 | None:intergenic |
| GAAACGCTCAAATTCCAACA+AGG | 0.653680 | 1_3:+10940486 | Msa0103640:CDS |
| CCGGAATCTATGCTTCTGAA+GGG | 0.655733 | 1_3:+10939590 | Msa0103640:CDS |
| TCTTTCTGGAACAGAACTGG+AGG | 0.657177 | 1_3:+10939799 | Msa0103640:CDS |
| AAACGCTCAAATTCCAACAA+GGG | 0.666050 | 1_3:+10940487 | Msa0103640:CDS |
| ATTCCAACAAGGGATCTCGG+TGG | 0.770272 | 1_3:+10940497 | Msa0103640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATGGTAAATAAATCA+AGG | - | chr1_3:10939127-10939146 | None:intergenic | 15.0% |
| !! | NNNGCAGATAAATATTATTA+TGG | - | chr1_3:10939141-10939160 | None:intergenic | 15.0% |
| !! | AAATTATCAGATATAATAAC+CGG | - | chr1_3:10940770-10940789 | None:intergenic | 15.0% |
| !!! | AGTAGTATATTTTTCAAATT+TGG | - | chr1_3:10940860-10940879 | None:intergenic | 15.0% |
| !! | TTATTATGGTAAATAAATCA+AGG | - | chr1_3:10939127-10939146 | None:intergenic | 15.0% |
| !! | NNNGCAGATAAATATTATTA+TGG | - | chr1_3:10939141-10939160 | None:intergenic | 15.0% |
| !! | AAATTATCAGATATAATAAC+CGG | - | chr1_3:10940770-10940789 | None:intergenic | 15.0% |
| !!! | AGTAGTATATTTTTCAAATT+TGG | - | chr1_3:10940860-10940879 | None:intergenic | 15.0% |
| !! | ATTCATATTTGTGAAATTTC+AGG | - | chr1_3:10939276-10939295 | None:intergenic | 20.0% |
| !!! | AGTATATAGGTTTTAAATTG+CGG | - | chr1_3:10940052-10940071 | None:intergenic | 20.0% |
| !! | AATTCAAAGTGACTTTATTA+AGG | - | chr1_3:10941173-10941192 | None:intergenic | 20.0% |
| !! | ATTCATATTTGTGAAATTTC+AGG | - | chr1_3:10939276-10939295 | None:intergenic | 20.0% |
| !!! | AGTATATAGGTTTTAAATTG+CGG | - | chr1_3:10940052-10940071 | None:intergenic | 20.0% |
| !! | AATTCAAAGTGACTTTATTA+AGG | - | chr1_3:10941173-10941192 | None:intergenic | 20.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | + | chr1_3:10939431-10939450 | Msa0103640:intron | 25.0% |
| ! | TTGTGATCCTTAAATATGTA+TGG | + | chr1_3:10939928-10939947 | Msa0103640:intron | 25.0% |
| ! | TTGTCTACCATACATATTTA+AGG | - | chr1_3:10939938-10939957 | None:intergenic | 25.0% |
| ! | TAAAGGCAGTGAAAATATAA+AGG | - | chr1_3:10940204-10940223 | None:intergenic | 25.0% |
| !! | TTATATTTTCACTGCCTTTA+TGG | + | chr1_3:10940204-10940223 | Msa0103640:intron | 25.0% |
| ! | GGTATAGAAACAAAAAACAT+AGG | + | chr1_3:10940281-10940300 | Msa0103640:intron | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | - | chr1_3:10940962-10940981 | None:intergenic | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | + | chr1_3:10941032-10941051 | Msa0103640:exon | 25.0% |
| ! | CTCGAGTAAAAATATAGATA+CGG | + | chr1_3:10941106-10941125 | Msa0103640:three_prime_UTR | 25.0% |
| ! | TGTGAATTTGTGTATATCTT+TGG | + | chr1_3:10941138-10941157 | Msa0103640:three_prime_UTR | 25.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | + | chr1_3:10939431-10939450 | Msa0103640:intron | 25.0% |
| ! | TTGTGATCCTTAAATATGTA+TGG | + | chr1_3:10939928-10939947 | Msa0103640:intron | 25.0% |
| ! | TTGTCTACCATACATATTTA+AGG | - | chr1_3:10939938-10939957 | None:intergenic | 25.0% |
| ! | TAAAGGCAGTGAAAATATAA+AGG | - | chr1_3:10940204-10940223 | None:intergenic | 25.0% |
| !! | TTATATTTTCACTGCCTTTA+TGG | + | chr1_3:10940204-10940223 | Msa0103640:intron | 25.0% |
| ! | GGTATAGAAACAAAAAACAT+AGG | + | chr1_3:10940281-10940300 | Msa0103640:intron | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | - | chr1_3:10940962-10940981 | None:intergenic | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | + | chr1_3:10941032-10941051 | Msa0103640:exon | 25.0% |
| ! | CTCGAGTAAAAATATAGATA+CGG | + | chr1_3:10941106-10941125 | Msa0103640:three_prime_UTR | 25.0% |
| ! | TGTGAATTTGTGTATATCTT+TGG | + | chr1_3:10941138-10941157 | Msa0103640:three_prime_UTR | 25.0% |
| TTTAAAAACCGACATCAAAC+CGG | + | chr1_3:10939330-10939349 | Msa0103640:intron | 30.0% | |
| ACTGCCTTAAACTGTTAAAA+CGG | + | chr1_3:10939363-10939382 | Msa0103640:intron | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | + | chr1_3:10939535-10939554 | Msa0103640:CDS | 30.0% | |
| TTTACTTACCTTTCAGTTCT+AGG | + | chr1_3:10939680-10939699 | Msa0103640:intron | 30.0% | |
| GATATTGAATCAAGTTCTTG+TGG | - | chr1_3:10939744-10939763 | None:intergenic | 30.0% | |
| !! | TCTCGTATTTTAAATTGCGA+TGG | + | chr1_3:10939891-10939910 | Msa0103640:intron | 30.0% |
| CACAATATAGTTGTGTATGA+AGG | + | chr1_3:10939996-10940015 | Msa0103640:intron | 30.0% | |
| ! | CAATCACAGTATAAAGGTTT+TGG | - | chr1_3:10940025-10940044 | None:intergenic | 30.0% |
| ! | CAGAAAAGTACAGACAAATT+TGG | + | chr1_3:10940128-10940147 | Msa0103640:intron | 30.0% |
| CAGTGAAAATATAAAGGTTC+TGG | - | chr1_3:10940198-10940217 | None:intergenic | 30.0% | |
| GGATTGTTCAAATTCCATAA+AGG | - | chr1_3:10940221-10940240 | None:intergenic | 30.0% | |
| GTATTGTCAATCATATATCG+CGG | - | chr1_3:10940252-10940271 | None:intergenic | 30.0% | |
| GATTGACAATACTGTCTTTA+TGG | + | chr1_3:10940260-10940279 | Msa0103640:intron | 30.0% | |
| TACAAGATACTTATCTATGC+AGG | + | chr1_3:10940349-10940368 | Msa0103640:intron | 30.0% | |
| ! | GACAAATCCTTCTTTTACAT+CGG | - | chr1_3:10940429-10940448 | None:intergenic | 30.0% |
| GTAAAAGAAGGATTTGTCTT+CGG | + | chr1_3:10940431-10940450 | Msa0103640:CDS | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | + | chr1_3:10940583-10940602 | Msa0103640:CDS | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | - | chr1_3:10940587-10940606 | None:intergenic | 30.0% | |
| ! | TTTCCAAAGATTTTCATGTC+AGG | - | chr1_3:10940620-10940639 | None:intergenic | 30.0% |
| ! | AATCTTTGGAAAATTGCCAA+AGG | + | chr1_3:10940628-10940647 | Msa0103640:CDS | 30.0% |
| TTACTGTTTCCTTTAACCTT+TGG | - | chr1_3:10940647-10940666 | None:intergenic | 30.0% | |
| ! | AAGTACTGTATTTGTGCAAA+AGG | + | chr1_3:10940692-10940711 | Msa0103640:CDS | 30.0% |
| AGTACTGTATTTGTGCAAAA+GGG | + | chr1_3:10940693-10940712 | Msa0103640:CDS | 30.0% | |
| TACTTTCTATTCCAGAAAAG+AGG | + | chr1_3:10940876-10940895 | Msa0103640:CDS | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | + | chr1_3:10940981-10941000 | Msa0103640:CDS | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | - | chr1_3:10940991-10941010 | None:intergenic | 30.0% | |
| GAATTTGTGTATATCTTTGG+AGG | + | chr1_3:10941141-10941160 | Msa0103640:three_prime_UTR | 30.0% | |
| TTTAAAAACCGACATCAAAC+CGG | + | chr1_3:10939330-10939349 | Msa0103640:intron | 30.0% | |
| ACTGCCTTAAACTGTTAAAA+CGG | + | chr1_3:10939363-10939382 | Msa0103640:intron | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | + | chr1_3:10939535-10939554 | Msa0103640:CDS | 30.0% | |
| TTTACTTACCTTTCAGTTCT+AGG | + | chr1_3:10939680-10939699 | Msa0103640:intron | 30.0% | |
| GATATTGAATCAAGTTCTTG+TGG | - | chr1_3:10939744-10939763 | None:intergenic | 30.0% | |
| !! | TCTCGTATTTTAAATTGCGA+TGG | + | chr1_3:10939891-10939910 | Msa0103640:intron | 30.0% |
| CACAATATAGTTGTGTATGA+AGG | + | chr1_3:10939996-10940015 | Msa0103640:intron | 30.0% | |
| ! | CAATCACAGTATAAAGGTTT+TGG | - | chr1_3:10940025-10940044 | None:intergenic | 30.0% |
| ! | CAGAAAAGTACAGACAAATT+TGG | + | chr1_3:10940128-10940147 | Msa0103640:intron | 30.0% |
| CAGTGAAAATATAAAGGTTC+TGG | - | chr1_3:10940198-10940217 | None:intergenic | 30.0% | |
| GGATTGTTCAAATTCCATAA+AGG | - | chr1_3:10940221-10940240 | None:intergenic | 30.0% | |
| GTATTGTCAATCATATATCG+CGG | - | chr1_3:10940252-10940271 | None:intergenic | 30.0% | |
| GATTGACAATACTGTCTTTA+TGG | + | chr1_3:10940260-10940279 | Msa0103640:intron | 30.0% | |
| TACAAGATACTTATCTATGC+AGG | + | chr1_3:10940349-10940368 | Msa0103640:intron | 30.0% | |
| ! | GACAAATCCTTCTTTTACAT+CGG | - | chr1_3:10940429-10940448 | None:intergenic | 30.0% |
| GTAAAAGAAGGATTTGTCTT+CGG | + | chr1_3:10940431-10940450 | Msa0103640:CDS | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | + | chr1_3:10940583-10940602 | Msa0103640:CDS | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | - | chr1_3:10940587-10940606 | None:intergenic | 30.0% | |
| ! | TTTCCAAAGATTTTCATGTC+AGG | - | chr1_3:10940620-10940639 | None:intergenic | 30.0% |
| ! | AATCTTTGGAAAATTGCCAA+AGG | + | chr1_3:10940628-10940647 | Msa0103640:CDS | 30.0% |
| TTACTGTTTCCTTTAACCTT+TGG | - | chr1_3:10940647-10940666 | None:intergenic | 30.0% | |
| ! | AAGTACTGTATTTGTGCAAA+AGG | + | chr1_3:10940692-10940711 | Msa0103640:CDS | 30.0% |
| AGTACTGTATTTGTGCAAAA+GGG | + | chr1_3:10940693-10940712 | Msa0103640:CDS | 30.0% | |
| TACTTTCTATTCCAGAAAAG+AGG | + | chr1_3:10940876-10940895 | Msa0103640:CDS | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | + | chr1_3:10940981-10941000 | Msa0103640:CDS | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | - | chr1_3:10940991-10941010 | None:intergenic | 30.0% | |
| GAATTTGTGTATATCTTTGG+AGG | + | chr1_3:10941141-10941160 | Msa0103640:three_prime_UTR | 30.0% | |
| CTGCCTTAAACTGTTAAAAC+GGG | + | chr1_3:10939364-10939383 | Msa0103640:intron | 35.0% | |
| !! | AGTCCCGTTTTAACAGTTTA+AGG | - | chr1_3:10939370-10939389 | None:intergenic | 35.0% |
| !!! | GTTATTTTGGTGGTCAATCA+CGG | - | chr1_3:10939396-10939415 | None:intergenic | 35.0% |
| CATGTTTCATGTAACCACTA+CGG | - | chr1_3:10939423-10939442 | None:intergenic | 35.0% | |
| TTTCAGGAGCTATGAATTGA+TGG | + | chr1_3:10939501-10939520 | Msa0103640:intron | 35.0% | |
| TGTTACCAAAAACCCAAAGA+AGG | + | chr1_3:10939648-10939667 | Msa0103640:CDS | 35.0% | |
| AAAACAGATGAGCCTTCTTT+GGG | - | chr1_3:10939663-10939682 | None:intergenic | 35.0% | |
| TAAAACAGATGAGCCTTCTT+TGG | - | chr1_3:10939664-10939683 | None:intergenic | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | - | chr1_3:10939719-10939738 | None:intergenic | 35.0% | |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | + | chr1_3:10939833-10939852 | Msa0103640:intron | 35.0% |
| TCTAGTTGGTTGTCATGATT+GGG | + | chr1_3:10939834-10939853 | Msa0103640:intron | 35.0% | |
| !! | CGTATTTTAAATTGCGATGG+CGG | + | chr1_3:10939894-10939913 | Msa0103640:intron | 35.0% |
| ATTGTGACTGCAATTGTAGT+CGG | - | chr1_3:10939982-10940001 | None:intergenic | 35.0% | |
| GGTTCACAATCACAGTATAA+AGG | - | chr1_3:10940031-10940050 | None:intergenic | 35.0% | |
| ACCTATATACTGTTCGAACT+TGG | + | chr1_3:10940061-10940080 | Msa0103640:intron | 35.0% | |
| TCCAAGTTCGAACAGTATAT+AGG | - | chr1_3:10940065-10940084 | None:intergenic | 35.0% | |
| TGATCGCAATATAAAACCTG+AGG | - | chr1_3:10940090-10940109 | None:intergenic | 35.0% | |
| !! | CAGGTTTTATATTGCGATCA+CGG | + | chr1_3:10940090-10940109 | Msa0103640:intron | 35.0% |
| ! | ATAACAACTGCATTTGAGGT+CGG | - | chr1_3:10940159-10940178 | None:intergenic | 35.0% |
| CTACATAACAACTGCATTTG+AGG | - | chr1_3:10940163-10940182 | None:intergenic | 35.0% | |
| CAGTTGTTATGTAGTTGTGA+AGG | + | chr1_3:10940169-10940188 | Msa0103640:intron | 35.0% | |
| TCATATATCGCGGAAAATTG+CGG | - | chr1_3:10940242-10940261 | None:intergenic | 35.0% | |
| !! | AAGCGTAATTTTGTTTCCGA+TGG | - | chr1_3:10940377-10940396 | None:intergenic | 35.0% |
| ATCGGAAACAAAATTACGCT+TGG | + | chr1_3:10940376-10940395 | Msa0103640:CDS | 35.0% | |
| TTGTTGGAATTTGAGCGTTT+CGG | - | chr1_3:10940487-10940506 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | + | chr1_3:10940487-10940506 | Msa0103640:CDS | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | + | chr1_3:10940582-10940601 | Msa0103640:CDS | 35.0% | |
| GATCCTGACATGAAAATCTT+TGG | + | chr1_3:10940614-10940633 | Msa0103640:CDS | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | + | chr1_3:10940635-10940654 | Msa0103640:CDS | 35.0% | |
| ! | GATTTTCTACGAATGTGTTC+CGG | + | chr1_3:10940748-10940767 | Msa0103640:CDS | 35.0% |
| CAATCCAAAACCTCGAAAAA+GGG | - | chr1_3:10940800-10940819 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | + | chr1_3:10940799-10940818 | Msa0103640:CDS | 35.0% |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | + | chr1_3:10940823-10940842 | Msa0103640:CDS | 35.0% |
| ! | ATGCTTAGATACCTCTTTTC+TGG | - | chr1_3:10940890-10940909 | None:intergenic | 35.0% |
| GTATCTAAGCATGCTTATGA+GGG | + | chr1_3:10940898-10940917 | Msa0103640:CDS | 35.0% | |
| CATGCTTATGAGGGTAAAAA+AGG | + | chr1_3:10940907-10940926 | Msa0103640:CDS | 35.0% | |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | - | chr1_3:10941026-10941045 | None:intergenic | 35.0% |
| CTTGAAGATAAAGTAGGAAC+AGG | + | chr1_3:10941038-10941057 | Msa0103640:three_prime_UTR | 35.0% | |
| ! | TGTGTATATCTTTGGAGGTT+TGG | + | chr1_3:10941146-10941165 | Msa0103640:three_prime_UTR | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | + | chr1_3:10941147-10941166 | Msa0103640:three_prime_UTR | 35.0% |
| CTGCCTTAAACTGTTAAAAC+GGG | + | chr1_3:10939364-10939383 | Msa0103640:intron | 35.0% | |
| !! | AGTCCCGTTTTAACAGTTTA+AGG | - | chr1_3:10939370-10939389 | None:intergenic | 35.0% |
| !!! | GTTATTTTGGTGGTCAATCA+CGG | - | chr1_3:10939396-10939415 | None:intergenic | 35.0% |
| CATGTTTCATGTAACCACTA+CGG | - | chr1_3:10939423-10939442 | None:intergenic | 35.0% | |
| TTTCAGGAGCTATGAATTGA+TGG | + | chr1_3:10939501-10939520 | Msa0103640:intron | 35.0% | |
| TGTTACCAAAAACCCAAAGA+AGG | + | chr1_3:10939648-10939667 | Msa0103640:CDS | 35.0% | |
| AAAACAGATGAGCCTTCTTT+GGG | - | chr1_3:10939663-10939682 | None:intergenic | 35.0% | |
| TAAAACAGATGAGCCTTCTT+TGG | - | chr1_3:10939664-10939683 | None:intergenic | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | - | chr1_3:10939719-10939738 | None:intergenic | 35.0% | |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | + | chr1_3:10939833-10939852 | Msa0103640:intron | 35.0% |
| TCTAGTTGGTTGTCATGATT+GGG | + | chr1_3:10939834-10939853 | Msa0103640:intron | 35.0% | |
| !! | CGTATTTTAAATTGCGATGG+CGG | + | chr1_3:10939894-10939913 | Msa0103640:intron | 35.0% |
| ATTGTGACTGCAATTGTAGT+CGG | - | chr1_3:10939982-10940001 | None:intergenic | 35.0% | |
| GGTTCACAATCACAGTATAA+AGG | - | chr1_3:10940031-10940050 | None:intergenic | 35.0% | |
| ACCTATATACTGTTCGAACT+TGG | + | chr1_3:10940061-10940080 | Msa0103640:intron | 35.0% | |
| TCCAAGTTCGAACAGTATAT+AGG | - | chr1_3:10940065-10940084 | None:intergenic | 35.0% | |
| TGATCGCAATATAAAACCTG+AGG | - | chr1_3:10940090-10940109 | None:intergenic | 35.0% | |
| !! | CAGGTTTTATATTGCGATCA+CGG | + | chr1_3:10940090-10940109 | Msa0103640:intron | 35.0% |
| ! | ATAACAACTGCATTTGAGGT+CGG | - | chr1_3:10940159-10940178 | None:intergenic | 35.0% |
| CTACATAACAACTGCATTTG+AGG | - | chr1_3:10940163-10940182 | None:intergenic | 35.0% | |
| CAGTTGTTATGTAGTTGTGA+AGG | + | chr1_3:10940169-10940188 | Msa0103640:intron | 35.0% | |
| TCATATATCGCGGAAAATTG+CGG | - | chr1_3:10940242-10940261 | None:intergenic | 35.0% | |
| !! | AAGCGTAATTTTGTTTCCGA+TGG | - | chr1_3:10940377-10940396 | None:intergenic | 35.0% |
| ATCGGAAACAAAATTACGCT+TGG | + | chr1_3:10940376-10940395 | Msa0103640:CDS | 35.0% | |
| TTGTTGGAATTTGAGCGTTT+CGG | - | chr1_3:10940487-10940506 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | + | chr1_3:10940487-10940506 | Msa0103640:CDS | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | + | chr1_3:10940582-10940601 | Msa0103640:CDS | 35.0% | |
| GATCCTGACATGAAAATCTT+TGG | + | chr1_3:10940614-10940633 | Msa0103640:CDS | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | + | chr1_3:10940635-10940654 | Msa0103640:CDS | 35.0% | |
| ! | GATTTTCTACGAATGTGTTC+CGG | + | chr1_3:10940748-10940767 | Msa0103640:CDS | 35.0% |
| CAATCCAAAACCTCGAAAAA+GGG | - | chr1_3:10940800-10940819 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | + | chr1_3:10940799-10940818 | Msa0103640:CDS | 35.0% |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | + | chr1_3:10940823-10940842 | Msa0103640:CDS | 35.0% |
| ! | ATGCTTAGATACCTCTTTTC+TGG | - | chr1_3:10940890-10940909 | None:intergenic | 35.0% |
| GTATCTAAGCATGCTTATGA+GGG | + | chr1_3:10940898-10940917 | Msa0103640:CDS | 35.0% | |
| CATGCTTATGAGGGTAAAAA+AGG | + | chr1_3:10940907-10940926 | Msa0103640:CDS | 35.0% | |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | - | chr1_3:10941026-10941045 | None:intergenic | 35.0% |
| CTTGAAGATAAAGTAGGAAC+AGG | + | chr1_3:10941038-10941057 | Msa0103640:three_prime_UTR | 35.0% | |
| ! | TGTGTATATCTTTGGAGGTT+TGG | + | chr1_3:10941146-10941165 | Msa0103640:three_prime_UTR | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | + | chr1_3:10941147-10941166 | Msa0103640:three_prime_UTR | 35.0% |
| TTCATGTAACCACTACGGTT+CGG | - | chr1_3:10939418-10939437 | None:intergenic | 40.0% | |
| TCCATGTGACTGTAACTTTC+AGG | + | chr1_3:10939485-10939504 | Msa0103640:intron | 40.0% | |
| TCCTGAAAGTTACAGTCACA+TGG | - | chr1_3:10939489-10939508 | None:intergenic | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | + | chr1_3:10939609-10939628 | Msa0103640:CDS | 40.0% | |
| !! | ATGAGCCTTCTTTGGGTTTT+TGG | - | chr1_3:10939656-10939675 | None:intergenic | 40.0% |
| TCTAGCATCCTAGAACTGAA+AGG | - | chr1_3:10939691-10939710 | None:intergenic | 40.0% | |
| !! | TTTCAGTTCTAGGATGCTAG+AGG | + | chr1_3:10939690-10939709 | Msa0103640:intron | 40.0% |
| !! | CATTCTTTCTGGAACAGAAC+TGG | + | chr1_3:10939796-10939815 | Msa0103640:CDS | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | + | chr1_3:10939820-10939839 | Msa0103640:intron | 40.0% |
| TAGACAAATGCTGCCAAATG+TGG | + | chr1_3:10939951-10939970 | Msa0103640:intron | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | + | chr1_3:10940486-10940505 | Msa0103640:CDS | 40.0% | |
| CAAATTCCAACAAGGGATCT+CGG | + | chr1_3:10940494-10940513 | Msa0103640:CDS | 40.0% | |
| !!! | ACAACATTAGCCTTTTTCGC+AGG | + | chr1_3:10940539-10940558 | Msa0103640:CDS | 40.0% |
| !!! | CAACATTAGCCTTTTTCGCA+GGG | + | chr1_3:10940540-10940559 | Msa0103640:CDS | 40.0% |
| CCAATCCAAAACCTCGAAAA+AGG | - | chr1_3:10940801-10940820 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | + | chr1_3:10940798-10940817 | Msa0103640:CDS | 40.0% |
| CTCCAGAACAATGACAGAAA+AGG | - | chr1_3:10940828-10940847 | None:intergenic | 40.0% | |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | + | chr1_3:10940829-10940848 | Msa0103640:CDS | 40.0% |
| GGTATCTAAGCATGCTTATG+AGG | + | chr1_3:10940897-10940916 | Msa0103640:CDS | 40.0% | |
| !! | AGGTACAGAAGCATTTCCTT+TGG | + | chr1_3:10940927-10940946 | Msa0103640:CDS | 40.0% |
| TGACAGGATTCTTGTTCCAA+AGG | - | chr1_3:10940946-10940965 | None:intergenic | 40.0% | |
| TTCATGTAACCACTACGGTT+CGG | - | chr1_3:10939418-10939437 | None:intergenic | 40.0% | |
| TCCATGTGACTGTAACTTTC+AGG | + | chr1_3:10939485-10939504 | Msa0103640:intron | 40.0% | |
| TCCTGAAAGTTACAGTCACA+TGG | - | chr1_3:10939489-10939508 | None:intergenic | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | + | chr1_3:10939609-10939628 | Msa0103640:CDS | 40.0% | |
| !! | ATGAGCCTTCTTTGGGTTTT+TGG | - | chr1_3:10939656-10939675 | None:intergenic | 40.0% |
| TCTAGCATCCTAGAACTGAA+AGG | - | chr1_3:10939691-10939710 | None:intergenic | 40.0% | |
| !! | TTTCAGTTCTAGGATGCTAG+AGG | + | chr1_3:10939690-10939709 | Msa0103640:intron | 40.0% |
| !! | CATTCTTTCTGGAACAGAAC+TGG | + | chr1_3:10939796-10939815 | Msa0103640:CDS | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | + | chr1_3:10939820-10939839 | Msa0103640:intron | 40.0% |
| TAGACAAATGCTGCCAAATG+TGG | + | chr1_3:10939951-10939970 | Msa0103640:intron | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | + | chr1_3:10940486-10940505 | Msa0103640:CDS | 40.0% | |
| CAAATTCCAACAAGGGATCT+CGG | + | chr1_3:10940494-10940513 | Msa0103640:CDS | 40.0% | |
| !!! | ACAACATTAGCCTTTTTCGC+AGG | + | chr1_3:10940539-10940558 | Msa0103640:CDS | 40.0% |
| !!! | CAACATTAGCCTTTTTCGCA+GGG | + | chr1_3:10940540-10940559 | Msa0103640:CDS | 40.0% |
| CCAATCCAAAACCTCGAAAA+AGG | - | chr1_3:10940801-10940820 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | + | chr1_3:10940798-10940817 | Msa0103640:CDS | 40.0% |
| CTCCAGAACAATGACAGAAA+AGG | - | chr1_3:10940828-10940847 | None:intergenic | 40.0% | |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | + | chr1_3:10940829-10940848 | Msa0103640:CDS | 40.0% |
| GGTATCTAAGCATGCTTATG+AGG | + | chr1_3:10940897-10940916 | Msa0103640:CDS | 40.0% | |
| !! | AGGTACAGAAGCATTTCCTT+TGG | + | chr1_3:10940927-10940946 | Msa0103640:CDS | 40.0% |
| TGACAGGATTCTTGTTCCAA+AGG | - | chr1_3:10940946-10940965 | None:intergenic | 40.0% | |
| !! | AATCCTGACCGGTTTGATGT+CGG | - | chr1_3:10939341-10939360 | None:intergenic | 45.0% |
| TAAGGCAGTTGAATCCTGAC+CGG | - | chr1_3:10939352-10939371 | None:intergenic | 45.0% | |
| !!! | CTACGGTTCGGTTATTTTGG+TGG | - | chr1_3:10939406-10939425 | None:intergenic | 45.0% |
| !!! | CCACTACGGTTCGGTTATTT+TGG | - | chr1_3:10939409-10939428 | None:intergenic | 45.0% |
| CCAAAATAACCGAACCGTAG+TGG | + | chr1_3:10939406-10939425 | Msa0103640:intron | 45.0% | |
| AGAAACGGCGAATGCAGTAT+AGG | - | chr1_3:10939568-10939587 | None:intergenic | 45.0% | |
| GCATAGATTCCGGTGAGAAA+CGG | - | chr1_3:10939583-10939602 | None:intergenic | 45.0% | |
| ACCGGAATCTATGCTTCTGA+AGG | + | chr1_3:10939589-10939608 | Msa0103640:CDS | 45.0% | |
| ! | CCCTTCAGAAGCATAGATTC+CGG | - | chr1_3:10939593-10939612 | None:intergenic | 45.0% |
| CCGGAATCTATGCTTCTGAA+GGG | + | chr1_3:10939590-10939609 | Msa0103640:CDS | 45.0% | |
| ! | GAATCTATGCTTCTGAAGGG+TGG | + | chr1_3:10939593-10939612 | Msa0103640:CDS | 45.0% |
| AAGAATGTCTCGCTGCAATC+AGG | - | chr1_3:10939783-10939802 | None:intergenic | 45.0% | |
| TTGCAGCGAGACATTCTTTC+TGG | + | chr1_3:10939785-10939804 | Msa0103640:CDS | 45.0% | |
| !! | TCTTTCTGGAACAGAACTGG+AGG | + | chr1_3:10939799-10939818 | Msa0103640:CDS | 45.0% |
| GACTGCAATTGTAGTCGGAT+TGG | - | chr1_3:10939977-10939996 | None:intergenic | 45.0% | |
| TGTTCGAACTTGGAAACCTC+AGG | + | chr1_3:10940071-10940090 | Msa0103640:intron | 45.0% | |
| CTTATCTATGCAGGCTCCAT+CGG | + | chr1_3:10940358-10940377 | Msa0103640:intron | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | + | chr1_3:10940390-10940409 | Msa0103640:CDS | 45.0% | |
| ! | TTTTACATCGGCGTTGCAGA+GGG | - | chr1_3:10940417-10940436 | None:intergenic | 45.0% |
| TGCAACGCCGATGTAAAAGA+AGG | + | chr1_3:10940419-10940438 | Msa0103640:CDS | 45.0% | |
| TCGGACGTATGTTTCAGGAA+GGG | - | chr1_3:10940468-10940487 | None:intergenic | 45.0% | |
| TTCGGACGTATGTTTCAGGA+AGG | - | chr1_3:10940469-10940488 | None:intergenic | 45.0% | |
| GGAGCATGCATGGTTATCTA+AGG | + | chr1_3:10940561-10940580 | Msa0103640:CDS | 45.0% | |
| AGTGAATAGTCCAAGAGTCG+TGG | + | chr1_3:10940721-10940740 | Msa0103640:CDS | 45.0% | |
| AAAATCGCTTCCACGACTCT+TGG | - | chr1_3:10940734-10940753 | None:intergenic | 45.0% | |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | + | chr1_3:10940787-10940806 | Msa0103640:CDS | 45.0% |
| TCCAAAACCTCGAAAAAGGG+TGG | - | chr1_3:10940797-10940816 | None:intergenic | 45.0% | |
| !! | AATCCTGACCGGTTTGATGT+CGG | - | chr1_3:10939341-10939360 | None:intergenic | 45.0% |
| TAAGGCAGTTGAATCCTGAC+CGG | - | chr1_3:10939352-10939371 | None:intergenic | 45.0% | |
| !!! | CTACGGTTCGGTTATTTTGG+TGG | - | chr1_3:10939406-10939425 | None:intergenic | 45.0% |
| !!! | CCACTACGGTTCGGTTATTT+TGG | - | chr1_3:10939409-10939428 | None:intergenic | 45.0% |
| CCAAAATAACCGAACCGTAG+TGG | + | chr1_3:10939406-10939425 | Msa0103640:intron | 45.0% | |
| AGAAACGGCGAATGCAGTAT+AGG | - | chr1_3:10939568-10939587 | None:intergenic | 45.0% | |
| GCATAGATTCCGGTGAGAAA+CGG | - | chr1_3:10939583-10939602 | None:intergenic | 45.0% | |
| ACCGGAATCTATGCTTCTGA+AGG | + | chr1_3:10939589-10939608 | Msa0103640:CDS | 45.0% | |
| ! | CCCTTCAGAAGCATAGATTC+CGG | - | chr1_3:10939593-10939612 | None:intergenic | 45.0% |
| CCGGAATCTATGCTTCTGAA+GGG | + | chr1_3:10939590-10939609 | Msa0103640:CDS | 45.0% | |
| ! | GAATCTATGCTTCTGAAGGG+TGG | + | chr1_3:10939593-10939612 | Msa0103640:CDS | 45.0% |
| AAGAATGTCTCGCTGCAATC+AGG | - | chr1_3:10939783-10939802 | None:intergenic | 45.0% | |
| TTGCAGCGAGACATTCTTTC+TGG | + | chr1_3:10939785-10939804 | Msa0103640:CDS | 45.0% | |
| !! | TCTTTCTGGAACAGAACTGG+AGG | + | chr1_3:10939799-10939818 | Msa0103640:CDS | 45.0% |
| GACTGCAATTGTAGTCGGAT+TGG | - | chr1_3:10939977-10939996 | None:intergenic | 45.0% | |
| TGTTCGAACTTGGAAACCTC+AGG | + | chr1_3:10940071-10940090 | Msa0103640:intron | 45.0% | |
| CTTATCTATGCAGGCTCCAT+CGG | + | chr1_3:10940358-10940377 | Msa0103640:intron | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | + | chr1_3:10940390-10940409 | Msa0103640:CDS | 45.0% | |
| ! | TTTTACATCGGCGTTGCAGA+GGG | - | chr1_3:10940417-10940436 | None:intergenic | 45.0% |
| TGCAACGCCGATGTAAAAGA+AGG | + | chr1_3:10940419-10940438 | Msa0103640:CDS | 45.0% | |
| TCGGACGTATGTTTCAGGAA+GGG | - | chr1_3:10940468-10940487 | None:intergenic | 45.0% | |
| TTCGGACGTATGTTTCAGGA+AGG | - | chr1_3:10940469-10940488 | None:intergenic | 45.0% | |
| GGAGCATGCATGGTTATCTA+AGG | + | chr1_3:10940561-10940580 | Msa0103640:CDS | 45.0% | |
| AGTGAATAGTCCAAGAGTCG+TGG | + | chr1_3:10940721-10940740 | Msa0103640:CDS | 45.0% | |
| AAAATCGCTTCCACGACTCT+TGG | - | chr1_3:10940734-10940753 | None:intergenic | 45.0% | |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | + | chr1_3:10940787-10940806 | Msa0103640:CDS | 45.0% |
| TCCAAAACCTCGAAAAAGGG+TGG | - | chr1_3:10940797-10940816 | None:intergenic | 45.0% | |
| AAACCGACATCAAACCGGTC+AGG | + | chr1_3:10939335-10939354 | Msa0103640:intron | 50.0% | |
| !! | GTAGTCGGATTGGCCACATT+TGG | - | chr1_3:10939967-10939986 | None:intergenic | 50.0% |
| TGCGATCACGGTTGCAGATA+AGG | + | chr1_3:10940102-10940121 | Msa0103640:intron | 50.0% | |
| GATCACGGTTGCAGATAAGG+TGG | + | chr1_3:10940105-10940124 | Msa0103640:intron | 50.0% | |
| ! | CAACTGCATTTGAGGTCGGA+TGG | - | chr1_3:10940155-10940174 | None:intergenic | 50.0% |
| ! | CTTTTACATCGGCGTTGCAG+AGG | - | chr1_3:10940418-10940437 | None:intergenic | 50.0% |
| GCGTTTCGGACGTATGTTTC+AGG | - | chr1_3:10940473-10940492 | None:intergenic | 50.0% | |
| ATTCCAACAAGGGATCTCGG+TGG | + | chr1_3:10940497-10940516 | Msa0103640:CDS | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | - | chr1_3:10940552-10940571 | None:intergenic | 50.0% | |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | + | chr1_3:10940551-10940570 | Msa0103640:CDS | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | + | chr1_3:10940793-10940812 | Msa0103640:CDS | 50.0% |
| AAACCGACATCAAACCGGTC+AGG | + | chr1_3:10939335-10939354 | Msa0103640:intron | 50.0% | |
| !! | GTAGTCGGATTGGCCACATT+TGG | - | chr1_3:10939967-10939986 | None:intergenic | 50.0% |
| TGCGATCACGGTTGCAGATA+AGG | + | chr1_3:10940102-10940121 | Msa0103640:intron | 50.0% | |
| GATCACGGTTGCAGATAAGG+TGG | + | chr1_3:10940105-10940124 | Msa0103640:intron | 50.0% | |
| ! | CAACTGCATTTGAGGTCGGA+TGG | - | chr1_3:10940155-10940174 | None:intergenic | 50.0% |
| ! | CTTTTACATCGGCGTTGCAG+AGG | - | chr1_3:10940418-10940437 | None:intergenic | 50.0% |
| GCGTTTCGGACGTATGTTTC+AGG | - | chr1_3:10940473-10940492 | None:intergenic | 50.0% | |
| ATTCCAACAAGGGATCTCGG+TGG | + | chr1_3:10940497-10940516 | Msa0103640:CDS | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | - | chr1_3:10940552-10940571 | None:intergenic | 50.0% | |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | + | chr1_3:10940551-10940570 | Msa0103640:CDS | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | + | chr1_3:10940793-10940812 | Msa0103640:CDS | 50.0% |
| CTGCATTCGCCGTTTCTCAC+CGG | + | chr1_3:10939571-10939590 | Msa0103640:CDS | 55.0% | |
| TTGCCACCGAGATCCCTTGT+TGG | - | chr1_3:10940503-10940522 | None:intergenic | 55.0% | |
| CTGCATTCGCCGTTTCTCAC+CGG | + | chr1_3:10939571-10939590 | Msa0103640:CDS | 55.0% | |
| TTGCCACCGAGATCCCTTGT+TGG | - | chr1_3:10940503-10940522 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10939095 | 10941228 | 10939095 | ID=Msa0103640;Name=Msa0103640 |
| chr1_3 | mRNA | 10939095 | 10941228 | 10939095 | ID=Msa0103640-mRNA-1;Parent=Msa0103640;Name=Msa0103640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.25|0.75|0.33|0.25|4|195|324 |
| chr1_3 | exon | 10939095 | 10939099 | 10939095 | ID=Msa0103640-mRNA-1:exon:4506;Parent=Msa0103640-mRNA-1 |
| chr1_3 | exon | 10939507 | 10939677 | 10939507 | ID=Msa0103640-mRNA-1:exon:4507;Parent=Msa0103640-mRNA-1 |
| chr1_3 | exon | 10939702 | 10939837 | 10939702 | ID=Msa0103640-mRNA-1:exon:4508;Parent=Msa0103640-mRNA-1 |
| chr1_3 | exon | 10940371 | 10941228 | 10940371 | ID=Msa0103640-mRNA-1:exon:4509;Parent=Msa0103640-mRNA-1 |
| chr1_3 | CDS | 10939095 | 10939099 | 10939095 | ID=Msa0103640-mRNA-1:cds;Parent=Msa0103640-mRNA-1 |
| chr1_3 | CDS | 10939507 | 10939677 | 10939507 | ID=Msa0103640-mRNA-1:cds;Parent=Msa0103640-mRNA-1 |
| chr1_3 | CDS | 10939702 | 10939837 | 10939702 | ID=Msa0103640-mRNA-1:cds;Parent=Msa0103640-mRNA-1 |
| chr1_3 | CDS | 10940371 | 10941033 | 10940371 | ID=Msa0103640-mRNA-1:cds;Parent=Msa0103640-mRNA-1 |
| chr1_3 | three_prime_UTR | 10941034 | 10941228 | 10941034 | ID=Msa0103640-mRNA-1:three_prime_utr;Parent=Msa0103640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
