Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058730 | sp|Q9FFN2|GLYT3_ARATH | 45.063 | 395 | 203 | 6 | 174 | 558 | 121 | 511 | 1.12e-110 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058730 | G7IB43 | 95.196 | 562 | 22 | 1 | 2 | 563 | 32 | 588 | 0.0 | 1111 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002020 | Msa0058730 | 0.915492 | 5.517140e-85 | -8.615850e-47 |
| Msa0058730 | Msa0103620 | 0.814862 | 1.241369e-51 | -8.615850e-47 |
| Msa0058730 | Msa0103640 | 0.926063 | 7.837028e-91 | -8.615850e-47 |
| Msa0058730 | Msa0149990 | 0.920141 | 1.861461e-87 | -8.615850e-47 |
| Msa0058730 | Msa1212250 | 0.804224 | 2.393490e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058730 | MtrunA17_Chr1g0146181 | 95.196 | 562 | 22 | 1 | 2 | 563 | 32 | 588 | 0.0 | 1111 |
| Msa0058730 | MtrunA17_Chr3g0140131 | 68.914 | 534 | 149 | 6 | 35 | 563 | 74 | 595 | 0.0 | 746 |
| Msa0058730 | MtrunA17_Chr7g0265381 | 79.088 | 373 | 78 | 0 | 191 | 563 | 3 | 375 | 0.0 | 639 |
| Msa0058730 | MtrunA17_Chr8g0390121 | 61.712 | 444 | 166 | 3 | 118 | 560 | 168 | 608 | 0.0 | 580 |
| Msa0058730 | MtrunA17_Chr3g0140141 | 64.232 | 397 | 142 | 0 | 163 | 559 | 153 | 549 | 0.0 | 576 |
| Msa0058730 | MtrunA17_Chr1g0197381 | 64.402 | 368 | 125 | 2 | 192 | 558 | 182 | 544 | 1.53e-178 | 515 |
| Msa0058730 | MtrunA17_Chr4g0055991 | 52.278 | 461 | 187 | 8 | 104 | 558 | 99 | 532 | 9.85e-164 | 476 |
| Msa0058730 | MtrunA17_Chr7g0265451 | 45.588 | 408 | 201 | 7 | 163 | 558 | 113 | 511 | 2.51e-120 | 365 |
| Msa0058730 | MtrunA17_Chr7g0265461 | 46.457 | 381 | 190 | 5 | 188 | 558 | 18 | 394 | 7.15e-116 | 349 |
| Msa0058730 | MtrunA17_Chr3g0131051 | 43.959 | 389 | 203 | 4 | 181 | 558 | 103 | 487 | 1.31e-114 | 349 |
| Msa0058730 | MtrunA17_Chr3g0120131 | 42.404 | 441 | 229 | 6 | 134 | 558 | 47 | 478 | 8.76e-108 | 331 |
| Msa0058730 | MtrunA17_Chr1g0179651 | 46.765 | 340 | 171 | 5 | 224 | 558 | 1 | 335 | 3.74e-105 | 320 |
| Msa0058730 | MtrunA17_Chr3g0119721 | 47.006 | 334 | 170 | 3 | 228 | 558 | 11 | 340 | 1.23e-101 | 311 |
| Msa0058730 | MtrunA17_Chr3g0137491 | 45.455 | 341 | 178 | 4 | 223 | 558 | 50 | 387 | 9.79e-98 | 302 |
| Msa0058730 | MtrunA17_Chr4g0064471 | 38.785 | 428 | 229 | 10 | 160 | 558 | 43 | 466 | 4.19e-93 | 293 |
| Msa0058730 | MtrunA17_Chr4g0064411 | 40.827 | 387 | 202 | 7 | 191 | 558 | 80 | 458 | 3.90e-89 | 282 |
| Msa0058730 | MtrunA17_Chr4g0064461 | 38.243 | 387 | 213 | 10 | 191 | 558 | 82 | 461 | 9.86e-81 | 261 |
| Msa0058730 | MtrunA17_Chr5g0411991 | 35.838 | 346 | 205 | 9 | 215 | 554 | 73 | 407 | 2.12e-73 | 240 |
| Msa0058730 | MtrunA17_Chr7g0253441 | 35.278 | 360 | 189 | 13 | 218 | 557 | 141 | 476 | 9.96e-58 | 200 |
| Msa0058730 | MtrunA17_Chr5g0421571 | 34.842 | 221 | 128 | 8 | 215 | 430 | 126 | 335 | 9.43e-36 | 137 |
| Msa0058730 | MtrunA17_Chr8g0385671 | 28.652 | 356 | 197 | 14 | 235 | 553 | 49 | 384 | 4.63e-26 | 110 |
| Msa0058730 | MtrunA17_Chr8g0385651 | 28.652 | 356 | 197 | 14 | 235 | 553 | 49 | 384 | 3.54e-25 | 108 |
| Msa0058730 | MtrunA17_Chr7g0254391 | 27.609 | 297 | 179 | 10 | 277 | 553 | 190 | 470 | 4.90e-19 | 90.5 |
| Msa0058730 | MtrunA17_Chr4g0028201 | 27.138 | 269 | 151 | 8 | 317 | 553 | 189 | 444 | 7.66e-19 | 89.4 |
| Msa0058730 | MtrunA17_Chr2g0320251 | 25.466 | 322 | 176 | 11 | 232 | 512 | 85 | 383 | 1.33e-18 | 88.6 |
| Msa0058730 | MtrunA17_Chr3g0092341 | 25.939 | 293 | 192 | 7 | 276 | 553 | 188 | 470 | 3.91e-18 | 87.4 |
| Msa0058730 | MtrunA17_Chr6g0460631 | 26.421 | 299 | 182 | 8 | 276 | 553 | 184 | 465 | 1.80e-17 | 85.5 |
| Msa0058730 | MtrunA17_Chr4g0043801 | 25.743 | 303 | 175 | 11 | 278 | 554 | 163 | 441 | 3.50e-15 | 78.2 |
| Msa0058730 | MtrunA17_Chr3g0122631 | 23.490 | 298 | 190 | 7 | 278 | 553 | 119 | 400 | 1.81e-14 | 75.9 |
| Msa0058730 | MtrunA17_Chr4g0039811 | 26.199 | 271 | 177 | 9 | 280 | 537 | 184 | 444 | 1.03e-12 | 70.5 |
| Msa0058730 | MtrunA17_Chr8g0377331 | 23.692 | 325 | 200 | 13 | 258 | 553 | 93 | 398 | 1.55e-12 | 69.7 |
| Msa0058730 | MtrunA17_Chr1g0159421 | 25.982 | 331 | 198 | 14 | 233 | 531 | 71 | 386 | 2.12e-12 | 69.3 |
| Msa0058730 | MtrunA17_Chr1g0200871 | 24.316 | 329 | 188 | 13 | 258 | 537 | 115 | 431 | 5.28e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058730 | AT5G25820.1 | 52.640 | 625 | 223 | 13 | 2 | 559 | 32 | 650 | 0.0 | 613 |
| Msa0058730 | AT5G19670.1 | 61.771 | 463 | 174 | 2 | 100 | 561 | 147 | 607 | 0.0 | 598 |
| Msa0058730 | AT5G19670.2 | 61.771 | 463 | 174 | 2 | 100 | 561 | 147 | 607 | 0.0 | 598 |
| Msa0058730 | AT4G32790.1 | 53.957 | 556 | 236 | 7 | 7 | 559 | 53 | 591 | 0.0 | 598 |
| Msa0058730 | AT4G32790.3 | 53.957 | 556 | 236 | 7 | 7 | 559 | 53 | 591 | 0.0 | 598 |
| Msa0058730 | AT4G32790.2 | 53.957 | 556 | 236 | 7 | 7 | 559 | 53 | 591 | 0.0 | 598 |
| Msa0058730 | AT5G11610.1 | 60.048 | 413 | 156 | 5 | 154 | 561 | 137 | 545 | 0.0 | 527 |
| Msa0058730 | AT5G37000.1 | 56.637 | 452 | 186 | 4 | 108 | 558 | 106 | 548 | 0.0 | 525 |
| Msa0058730 | AT4G16745.1 | 60.000 | 370 | 142 | 4 | 193 | 556 | 157 | 526 | 6.87e-162 | 473 |
| Msa0058730 | AT4G16745.2 | 58.611 | 360 | 143 | 4 | 193 | 546 | 157 | 516 | 4.10e-150 | 444 |
| Msa0058730 | AT5G11610.2 | 56.090 | 312 | 129 | 4 | 154 | 461 | 137 | 444 | 1.28e-123 | 371 |
| Msa0058730 | AT5G03795.1 | 45.063 | 395 | 203 | 6 | 174 | 558 | 121 | 511 | 1.14e-111 | 343 |
| Msa0058730 | AT5G25310.1 | 43.243 | 407 | 215 | 10 | 161 | 558 | 76 | 475 | 7.78e-101 | 313 |
| Msa0058730 | AT3G07620.1 | 43.229 | 384 | 200 | 5 | 189 | 558 | 75 | 454 | 1.17e-98 | 307 |
| Msa0058730 | AT5G20260.2 | 42.693 | 349 | 190 | 5 | 216 | 558 | 117 | 461 | 7.39e-92 | 290 |
| Msa0058730 | AT5G11130.1 | 41.954 | 348 | 193 | 5 | 216 | 558 | 129 | 472 | 3.97e-90 | 286 |
| Msa0058730 | AT5G20260.3 | 42.941 | 340 | 184 | 5 | 225 | 558 | 21 | 356 | 4.08e-89 | 279 |
| Msa0058730 | AT5G20260.1 | 43.243 | 333 | 179 | 5 | 232 | 558 | 1 | 329 | 9.51e-89 | 277 |
| Msa0058730 | AT3G42180.1 | 40.563 | 355 | 195 | 5 | 216 | 558 | 114 | 464 | 1.01e-87 | 279 |
| Msa0058730 | AT5G11130.2 | 42.470 | 332 | 182 | 5 | 232 | 558 | 1 | 328 | 1.34e-87 | 275 |
| Msa0058730 | AT5G33290.1 | 40.947 | 359 | 194 | 6 | 213 | 558 | 141 | 494 | 5.48e-87 | 278 |
| Msa0058730 | AT3G42180.4 | 40.708 | 339 | 185 | 5 | 232 | 558 | 1 | 335 | 2.95e-85 | 268 |
| Msa0058730 | AT4G38040.1 | 37.572 | 346 | 199 | 9 | 215 | 554 | 83 | 417 | 6.54e-73 | 239 |
| Msa0058730 | AT5G11610.3 | 55.959 | 193 | 82 | 2 | 154 | 343 | 137 | 329 | 1.80e-72 | 235 |
| Msa0058730 | AT4G38040.2 | 35.258 | 329 | 193 | 10 | 215 | 534 | 83 | 400 | 6.32e-60 | 204 |
| Msa0058730 | AT5G61840.1 | 28.090 | 356 | 199 | 14 | 235 | 553 | 48 | 383 | 5.15e-25 | 108 |
| Msa0058730 | AT1G27440.1 | 28.080 | 349 | 208 | 13 | 235 | 553 | 45 | 380 | 9.22e-25 | 107 |
| Msa0058730 | AT2G28110.1 | 22.525 | 404 | 222 | 14 | 167 | 526 | 47 | 403 | 1.00e-18 | 89.4 |
| Msa0058730 | AT1G67410.1 | 25.970 | 335 | 199 | 13 | 252 | 553 | 88 | 406 | 3.01e-17 | 84.7 |
| Msa0058730 | AT3G03650.1 | 25.874 | 286 | 201 | 5 | 276 | 554 | 194 | 475 | 8.21e-17 | 84.0 |
| Msa0058730 | AT5G22940.1 | 25.633 | 316 | 178 | 10 | 276 | 554 | 153 | 448 | 1.09e-16 | 83.2 |
| Msa0058730 | AT5G22940.2 | 24.444 | 315 | 183 | 9 | 276 | 554 | 182 | 477 | 1.47e-16 | 83.2 |
| Msa0058730 | AT3G45400.1 | 26.117 | 291 | 189 | 7 | 278 | 553 | 157 | 436 | 2.76e-15 | 79.0 |
| Msa0058730 | AT1G74680.1 | 26.022 | 269 | 184 | 7 | 276 | 534 | 150 | 413 | 1.54e-13 | 73.6 |
| Msa0058730 | AT5G16890.1 | 27.076 | 277 | 167 | 9 | 280 | 537 | 190 | 450 | 4.30e-13 | 72.4 |
| Msa0058730 | AT2G35100.1 | 24.832 | 298 | 185 | 10 | 278 | 553 | 130 | 410 | 6.55e-13 | 71.2 |
| Msa0058730 | AT1G21480.1 | 23.881 | 335 | 210 | 13 | 236 | 539 | 89 | 409 | 1.46e-12 | 70.5 |
| Msa0058730 | AT1G34270.1 | 24.138 | 319 | 194 | 12 | 258 | 537 | 115 | 424 | 1.31e-11 | 67.4 |
| Msa0058730 | AT1G21480.2 | 24.573 | 293 | 177 | 12 | 236 | 498 | 89 | 367 | 2.28e-11 | 66.2 |
| Msa0058730 | AT5G44930.3 | 25.368 | 272 | 174 | 9 | 278 | 536 | 129 | 384 | 3.20e-11 | 65.9 |
| Msa0058730 | AT5G44930.2 | 27.083 | 240 | 146 | 9 | 278 | 504 | 129 | 352 | 4.04e-11 | 65.9 |
| Msa0058730 | AT5G44930.1 | 27.083 | 240 | 146 | 9 | 278 | 504 | 129 | 352 | 4.04e-11 | 65.9 |
Find 101 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTACATTTGTTATATT+TGG | 0.070038 | 1_2:+15295223 | None:intergenic |
| ACTAAAACTCTCATTCTTTA+TGG | 0.137919 | 1_2:+15295174 | None:intergenic |
| ATATGATCCTTCACTCTATT+TGG | 0.169874 | 1_2:-15292909 | Msa0058730:CDS |
| TTGCGACCAGACATTCTTTC+TGG | 0.170627 | 1_2:-15294097 | Msa0058730:CDS |
| TTTACTTGCCATTCAGTTCT+AGG | 0.176209 | 1_2:-15294202 | Msa0058730:CDS |
| ATGGATACTGTTTCAATTAC+TGG | 0.183533 | 1_2:-15295370 | Msa0058730:CDS |
| AATAGAACATTGCCATAATT+TGG | 0.209213 | 1_2:+15295526 | None:intergenic |
| CAGTATGTTGAACCAAATTA+TGG | 0.217581 | 1_2:-15295538 | Msa0058730:CDS |
| GGAAAATTGCCAAAGGTTAA+AGG | 0.228106 | 1_2:-15293255 | Msa0058730:CDS |
| CCAATCCAAAACCTCGAAAA+AGG | 0.233899 | 1_2:+15293092 | None:intergenic |
| ATGGAAACATTATGATAAAT+TGG | 0.239209 | 1_2:+15294814 | None:intergenic |
| TAAAACAAATGAGCCTTCTT+TGG | 0.247962 | 1_2:+15294221 | None:intergenic |
| GTGTATATCTTTGGAGGTTT+GGG | 0.253031 | 1_2:-15292743 | Msa0058730:three_prime_UTR |
| TGTGTATATCTTTGGAGGTT+TGG | 0.266492 | 1_2:-15292744 | Msa0058730:three_prime_UTR |
| ATGCATGCTCCCTGCGAAAA+AGG | 0.268698 | 1_2:+15293341 | None:intergenic |
| TTTCAGGAGCTATGAATTAA+TGG | 0.271401 | 1_2:-15294381 | Msa0058730:intron |
| GCGTTTCGGACGTATGTTTC+AGG | 0.278879 | 1_2:+15293420 | None:intergenic |
| AATTCAAAGTGACTTTATTA+AGG | 0.287966 | 1_2:+15292720 | None:intergenic |
| TTCTAGTTGGTTGTCATGAT+TGG | 0.288754 | 1_2:-15294049 | Msa0058730:CDS |
| TGTGAATTTGTGTATATCTT+TGG | 0.312781 | 1_2:-15292752 | Msa0058730:three_prime_UTR |
| ATTGTACTTTCTGATGATAT+TGG | 0.345521 | 1_2:+15295478 | None:intergenic |
| TAAATTGGACCATAGAGATT+TGG | 0.359643 | 1_2:+15294829 | None:intergenic |
| AAGAATGATCCAAATCTCTA+TGG | 0.372841 | 1_2:-15294838 | Msa0058730:CDS |
| AAAGGTGGACTTAAATTTGT+TGG | 0.379002 | 1_2:+15295268 | None:intergenic |
| TTTGGATCATTCTTTACAAT+TGG | 0.380163 | 1_2:+15294847 | None:intergenic |
| GGTATCTAAGCATGCTTATG+AGG | 0.380545 | 1_2:-15292993 | Msa0058730:CDS |
| CATTCTTTCTGGAACAGAAC+TGG | 0.382167 | 1_2:-15294086 | Msa0058730:CDS |
| TCAGAAAGCTAATGTAACTA+TGG | 0.384778 | 1_2:-15295389 | Msa0058730:CDS |
| TTACTGTTTCCTTTAACCTT+TGG | 0.391535 | 1_2:+15293246 | None:intergenic |
| TCCCAATGTTTCAATAGTAT+TGG | 0.397546 | 1_2:+15293306 | None:intergenic |
| AAGTACTGTATTTGTGCAAA+AGG | 0.404759 | 1_2:-15293198 | Msa0058730:CDS |
| AAAATTGCTTCCACAACTCT+TGG | 0.408775 | 1_2:+15293159 | None:intergenic |
| ACAAATTTAAGTCCACCTTT+TGG | 0.414392 | 1_2:-15295265 | Msa0058730:CDS |
| TTGTTGGAATTTGAGCGTTT+CGG | 0.415130 | 1_2:+15293406 | None:intergenic |
| TCTAGTTGGTTGTCATGATT+GGG | 0.419172 | 1_2:-15294048 | Msa0058730:intron |
| AAATTTGTTGGAGCATTCTC+AGG | 0.427775 | 1_2:+15295280 | None:intergenic |
| CGAGACAAGAGTTCTTCTAT+TGG | 0.433464 | 1_2:-15295124 | Msa0058730:CDS |
| AGGTACAGAAGCATTTCCTT+TGG | 0.434501 | 1_2:-15292963 | Msa0058730:CDS |
| AATCATGTAGATATTGAATC+AGG | 0.436944 | 1_2:+15294132 | None:intergenic |
| CAAATTCCAACAAGGGATCT+TGG | 0.446305 | 1_2:-15293396 | Msa0058730:CDS |
| GCCAATACTATTGAAACATT+GGG | 0.446619 | 1_2:-15293307 | Msa0058730:CDS |
| TACGCTTGGCAAACTGCATA+AGG | 0.450418 | 1_2:-15293500 | Msa0058730:CDS |
| CTTGAAGATAAAGTAGGAAC+AGG | 0.452481 | 1_2:-15292852 | Msa0058730:three_prime_UTR |
| GTAAAAGAAGGATTTGTCTT+CGG | 0.456224 | 1_2:-15293459 | Msa0058730:CDS |
| TTCTGTCATTGTTCTGGAGA+AGG | 0.459845 | 1_2:-15293061 | Msa0058730:CDS |
| ACTGTCGTGACTTCTTTAAT+CGG | 0.465080 | 1_2:+15295064 | None:intergenic |
| TACTTTCTATTCCAGAAAAG+AGG | 0.465367 | 1_2:-15293014 | Msa0058730:CDS |
| GATCCTGACATGAAAATCTT+CGG | 0.466006 | 1_2:-15293276 | Msa0058730:CDS |
| GGCCAATACTATTGAAACAT+TGG | 0.469555 | 1_2:-15293308 | Msa0058730:CDS |
| AAATTATCAGATATAATAAC+CGG | 0.469771 | 1_2:+15293123 | None:intergenic |
| AAGAATGTCTGGTCGCAATC+AGG | 0.469810 | 1_2:+15294102 | None:intergenic |
| GCATAGATTCCGGTGAGAAA+CGG | 0.474338 | 1_2:+15294302 | None:intergenic |
| TATTGGCAGCACTGTGCCTA+AGG | 0.480884 | 1_2:-15295107 | Msa0058730:CDS |
| GAATTTGTGTATATCTTTGG+AGG | 0.484052 | 1_2:-15292749 | Msa0058730:three_prime_UTR |
| CTGCATTCGCCGTTTCTCAC+CGG | 0.484618 | 1_2:-15294311 | Msa0058730:CDS |
| TTGCCACCAAGATCCCTTGT+TGG | 0.484877 | 1_2:+15293390 | None:intergenic |
| CTCCAGAACAATGACAGAAA+AGG | 0.491004 | 1_2:+15293065 | None:intergenic |
| AGTTACATTAGCTTTCTGAA+TGG | 0.492000 | 1_2:+15295393 | None:intergenic |
| TTGCCACCATTCTGTAATGA+TGG | 0.494002 | 1_2:+15295151 | None:intergenic |
| AGAAACGGCGAATGCAGTAT+AGG | 0.502439 | 1_2:+15294317 | None:intergenic |
| TGAATTTCTTGACGCTCCTT+AGG | 0.508654 | 1_2:+15295091 | None:intergenic |
| TCTGTTCCAGAAAGAATGTC+TGG | 0.511083 | 1_2:+15294091 | None:intergenic |
| GGAGCATGCATGGTTATGTA+AGG | 0.512586 | 1_2:-15293329 | Msa0058730:CDS |
| ATCAGAAACAAAATTACGCT+TGG | 0.513736 | 1_2:-15293514 | Msa0058730:CDS |
| CCATGCTTCGTATCGATCAA+TGG | 0.513815 | 1_2:-15295011 | Msa0058730:intron |
| TTTAGTCCATCATTACAGAA+TGG | 0.517008 | 1_2:-15295157 | Msa0058730:CDS |
| GTTGGAGCATTCTCAGGAGA+AGG | 0.526477 | 1_2:+15295286 | None:intergenic |
| TGACAGGATTCTTGTTCCAA+AGG | 0.530529 | 1_2:+15292947 | None:intergenic |
| CCCTTCAGAAGCATAGATTC+CGG | 0.536340 | 1_2:+15294292 | None:intergenic |
| TGAAATATATCATACTTGAC+AGG | 0.536585 | 1_2:+15292931 | None:intergenic |
| ATGCGAATTCTTCACATACA+AGG | 0.538204 | 1_2:+15294166 | None:intergenic |
| AGTACTGTATTTGTGCAAAA+GGG | 0.542312 | 1_2:-15293197 | Msa0058730:CDS |
| ACCGGAATCTATGCTTCTGA+AGG | 0.545542 | 1_2:-15294293 | Msa0058730:CDS |
| AGATAACTTGAAGATAAAGT+AGG | 0.551404 | 1_2:-15292858 | Msa0058730:three_prime_UTR |
| ATGATTCAAAATTGTGACAT+TGG | 0.552021 | 1_2:+15295438 | None:intergenic |
| TGCAACGCCGATGTAAAAGA+AGG | 0.554573 | 1_2:-15293471 | Msa0058730:CDS |
| AGGGTGGTTTATGAAGCTAA+TGG | 0.555086 | 1_2:-15294273 | Msa0058730:CDS |
| GATATTGAATCAGGTTCTTG+TGG | 0.555739 | 1_2:+15294141 | None:intergenic |
| ACATTTGCCGTAGAACCAAA+AGG | 0.561326 | 1_2:+15295250 | None:intergenic |
| GACTTCTTACCTCTTGAACA+TGG | 0.568830 | 1_2:+15294795 | None:intergenic |
| TCTAGCATCCTAGAACTGAA+TGG | 0.576412 | 1_2:+15294194 | None:intergenic |
| ATAATGTTTCCATGTTCAAG+AGG | 0.579284 | 1_2:-15294804 | Msa0058730:intron |
| AGTGAATAGTCCAAGAGTTG+TGG | 0.583880 | 1_2:-15293169 | Msa0058730:CDS |
| TCTTCAAGTTATCTAGCTAG+TGG | 0.584802 | 1_2:+15292867 | None:intergenic |
| AGTCCATCATTACAGAATGG+TGG | 0.586418 | 1_2:-15295154 | Msa0058730:CDS |
| TTTGGTTCTACGGCAAATGT+CGG | 0.592484 | 1_2:-15295247 | Msa0058730:CDS |
| CCATTGATCGATACGAAGCA+TGG | 0.598257 | 1_2:+15295011 | None:intergenic |
| GAATCTATGCTTCTGAAGGG+TGG | 0.610066 | 1_2:-15294289 | Msa0058730:CDS |
| GTATCTAAGCATGCTTATGA+GGG | 0.611871 | 1_2:-15292992 | Msa0058730:CDS |
| ATTCCAACAAGGGATCTTGG+TGG | 0.620085 | 1_2:-15293393 | Msa0058730:CDS |
| AAAGTGTATGTATACAGAGA+AGG | 0.623220 | 1_2:-15294347 | Msa0058730:CDS |
| TGTTGATCGAGAGTTACTGC+AGG | 0.633527 | 1_2:-15294893 | Msa0058730:CDS |
| AATCTTCGGAAAATTGCCAA+AGG | 0.640718 | 1_2:-15293262 | Msa0058730:CDS |
| TATTGTACCAAATAGAGTGA+AGG | 0.643007 | 1_2:+15292902 | None:intergenic |
| GAAACGCTCAAATTCCAACA+AGG | 0.653680 | 1_2:-15293404 | Msa0058730:CDS |
| CCGGAATCTATGCTTCTGAA+GGG | 0.655733 | 1_2:-15294292 | Msa0058730:CDS |
| TCTTTCTGGAACAGAACTGG+AGG | 0.657177 | 1_2:-15294083 | Msa0058730:CDS |
| ATTCAGTTCTAGGATGCTAG+AGG | 0.657876 | 1_2:-15294192 | Msa0058730:CDS |
| AAACGCTCAAATTCCAACAA+GGG | 0.666050 | 1_2:-15293403 | Msa0058730:CDS |
| TCAACATTTGAAAACCACCT+CGG | 0.674317 | 1_2:+15294910 | None:intergenic |
| TTTGCCGTAGAACCAAAAGG+TGG | 0.722490 | 1_2:+15295253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATATTCTATTGTT+TGG | - | chr1_2:15292697-15292716 | Msa0058730:three_prime_UTR | 10.0% |
| !! | AAATTATCAGATATAATAAC+CGG | + | chr1_2:15295451-15295470 | None:intergenic | 15.0% |
| !!! | AGTAGTATATTTTTCAAATT+TGG | + | chr1_2:15295541-15295560 | None:intergenic | 15.0% |
| !! | TTATATTCTATTGTTTGGTT+TGG | - | chr1_2:15292702-15292721 | Msa0058730:three_prime_UTR | 20.0% |
| !!! | AACTTGATATTTGATTCTTT+TGG | - | chr1_2:15292754-15292773 | Msa0058730:three_prime_UTR | 20.0% |
| !!! | TTGAAGAATTTTAGCAAAAT+GGG | - | chr1_2:15292825-15292844 | Msa0058730:three_prime_UTR | 20.0% |
| !! | TAGAAACAAAGAGATTAATA+TGG | - | chr1_2:15292874-15292893 | Msa0058730:exon | 20.0% |
| !!! | AACACTACATTTGTTATATT+TGG | + | chr1_2:15293351-15293370 | None:intergenic | 20.0% |
| !! | ATGGAAACATTATGATAAAT+TGG | + | chr1_2:15293760-15293779 | None:intergenic | 20.0% |
| !! | ATTCATATTTGTGAAATTTC+AGG | + | chr1_2:15293813-15293832 | None:intergenic | 20.0% |
| !!! | TTTTTCTACCATACATATTA+AGG | + | chr1_2:15294627-15294646 | None:intergenic | 20.0% |
| !! | ATAACCTTAAAAACATTTAG+GGG | + | chr1_2:15294706-15294725 | None:intergenic | 20.0% |
| !! | GATAACCTTAAAAACATTTA+GGG | + | chr1_2:15294707-15294726 | None:intergenic | 20.0% |
| !! | TGATAACCTTAAAAACATTT+AGG | + | chr1_2:15294708-15294727 | None:intergenic | 20.0% |
| !! | AATTCAAAGTGACTTTATTA+AGG | + | chr1_2:15295854-15295873 | None:intergenic | 20.0% |
| !!! | GTTGAAGAATTTTAGCAAAA+TGG | - | chr1_2:15292824-15292843 | Msa0058730:three_prime_UTR | 25.0% |
| ! | AATAGAACATTGCCATAATT+TGG | + | chr1_2:15293048-15293067 | None:intergenic | 25.0% |
| ! | ATTGTACTTTCTGATGATAT+TGG | + | chr1_2:15293096-15293115 | None:intergenic | 25.0% |
| ! | ATGATTCAAAATTGTGACAT+TGG | + | chr1_2:15293136-15293155 | None:intergenic | 25.0% |
| ! | ACTAAAACTCTCATTCTTTA+TGG | + | chr1_2:15293400-15293419 | None:intergenic | 25.0% |
| ! | TTTGGATCATTCTTTACAAT+TGG | + | chr1_2:15293727-15293746 | None:intergenic | 25.0% |
| ! | NNNNNNNNACTGAACTGAAC+TGG | + | chr1_2:15293992-15294011 | None:intergenic | 25.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | - | chr1_2:15294146-15294165 | Msa0058730:CDS | 25.0% |
| ! | AATCATGTAGATATTGAATC+AGG | + | chr1_2:15294442-15294461 | None:intergenic | 25.0% |
| ! | GCTTCTATTTGAAAACAATT+TGG | + | chr1_2:15294778-15294797 | None:intergenic | 25.0% |
| !! | AATTTTCTATGAATGTGTTC+CGG | - | chr1_2:15295429-15295448 | Msa0058730:CDS | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | + | chr1_2:15295643-15295662 | None:intergenic | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | - | chr1_2:15295713-15295732 | Msa0058730:intron | 25.0% |
| ! | CTCGAGTAAAAATATAGATA+CGG | - | chr1_2:15295787-15295806 | Msa0058730:intron | 25.0% |
| ! | TGTGAATTTGTGTATATCTT+TGG | - | chr1_2:15295819-15295838 | Msa0058730:intron | 25.0% |
| !! | AAGAATTTTAGCAAAATGGG+TGG | - | chr1_2:15292828-15292847 | Msa0058730:three_prime_UTR | 30.0% |
| CAGTATGTTGAACCAAATTA+TGG | - | chr1_2:15293033-15293052 | Msa0058730:CDS | 30.0% | |
| !! | AGTTACATTAGCTTTCTGAA+TGG | + | chr1_2:15293181-15293200 | None:intergenic | 30.0% |
| TCAGAAAGCTAATGTAACTA+TGG | - | chr1_2:15293182-15293201 | Msa0058730:CDS | 30.0% | |
| ATGGATACTGTTTCAATTAC+TGG | - | chr1_2:15293201-15293220 | Msa0058730:CDS | 30.0% | |
| !!! | TTCAATTACTGGTTTTGTCT+TGG | - | chr1_2:15293212-15293231 | Msa0058730:CDS | 30.0% |
| !!! | GATTTGTTTTGTGACAATTC+TGG | + | chr1_2:15293240-15293259 | None:intergenic | 30.0% |
| ! | AAAGGTGGACTTAAATTTGT+TGG | + | chr1_2:15293306-15293325 | None:intergenic | 30.0% |
| ! | ACAAATTTAAGTCCACCTTT+TGG | - | chr1_2:15293306-15293325 | Msa0058730:CDS | 30.0% |
| TTTAGTCCATCATTACAGAA+TGG | - | chr1_2:15293414-15293433 | Msa0058730:CDS | 30.0% | |
| !! | TTAATGTATTTTAGAAGCCG+AGG | - | chr1_2:15293644-15293663 | Msa0058730:intron | 30.0% |
| AAGAATGATCCAAATCTCTA+TGG | - | chr1_2:15293733-15293752 | Msa0058730:intron | 30.0% | |
| TAAATTGGACCATAGAGATT+TGG | + | chr1_2:15293745-15293764 | None:intergenic | 30.0% | |
| ATAATGTTTCCATGTTCAAG+AGG | - | chr1_2:15293767-15293786 | Msa0058730:intron | 30.0% | |
| TTTAAAAACCGACATCAAAC+CGG | - | chr1_2:15293866-15293885 | Msa0058730:intron | 30.0% | |
| !!! | CTGAATTGACTTGAATTTTC+AGG | - | chr1_2:15294174-15294193 | Msa0058730:CDS | 30.0% |
| TTTCAGGAGCTATGAATTAA+TGG | - | chr1_2:15294190-15294209 | Msa0058730:CDS | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | - | chr1_2:15294224-15294243 | Msa0058730:CDS | 30.0% | |
| TAAAACAAATGAGCCTTCTT+TGG | + | chr1_2:15294353-15294372 | None:intergenic | 30.0% | |
| !! | CGTATTTTAAATTGCGATGA+TGG | - | chr1_2:15294583-15294602 | Msa0058730:intron | 30.0% |
| GTTGTGATCCTTAATATGTA+TGG | - | chr1_2:15294616-15294635 | Msa0058730:intron | 30.0% | |
| TAGAAAAATGCTGACAAATG+TGG | - | chr1_2:15294639-15294658 | Msa0058730:intron | 30.0% | |
| GTTCCAATGGTTTCAAATTA+TGG | + | chr1_2:15294684-15294703 | None:intergenic | 30.0% | |
| TGGTATGGAAACAAAAACAT+AGG | - | chr1_2:15294963-15294982 | Msa0058730:intron | 30.0% | |
| !!! | AAGCGTAATTTTGTTTCTGA+TGG | + | chr1_2:15295058-15295077 | None:intergenic | 30.0% |
| ATCAGAAACAAAATTACGCT+TGG | - | chr1_2:15295057-15295076 | Msa0058730:CDS | 30.0% | |
| ! | GACAAATCCTTCTTTTACAT+CGG | + | chr1_2:15295110-15295129 | None:intergenic | 30.0% |
| GTAAAAGAAGGATTTGTCTT+CGG | - | chr1_2:15295112-15295131 | Msa0058730:CDS | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | - | chr1_2:15295264-15295283 | Msa0058730:CDS | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | + | chr1_2:15295268-15295287 | None:intergenic | 30.0% | |
| TTACTGTTTCCTTTAACCTT+TGG | + | chr1_2:15295328-15295347 | None:intergenic | 30.0% | |
| ! | AAGTACTGTATTTGTGCAAA+AGG | - | chr1_2:15295373-15295392 | Msa0058730:CDS | 30.0% |
| AGTACTGTATTTGTGCAAAA+GGG | - | chr1_2:15295374-15295393 | Msa0058730:CDS | 30.0% | |
| TACTTTCTATTCCAGAAAAG+AGG | - | chr1_2:15295557-15295576 | Msa0058730:intron | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | - | chr1_2:15295662-15295681 | Msa0058730:intron | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | + | chr1_2:15295672-15295691 | None:intergenic | 30.0% | |
| GAATTTGTGTATATCTTTGG+AGG | - | chr1_2:15295822-15295841 | Msa0058730:intron | 30.0% | |
| !!! | TCTTTTGGTGTTTTTTGCAG+AGG | - | chr1_2:15292769-15292788 | Msa0058730:three_prime_UTR | 35.0% |
| !! | AAATTTGTTGGAGCATTCTC+AGG | + | chr1_2:15293294-15293313 | None:intergenic | 35.0% |
| ACTGTCGTGACTTCTTTAAT+CGG | + | chr1_2:15293510-15293529 | None:intergenic | 35.0% | |
| TCAACATTTGAAAACCACCT+CGG | + | chr1_2:15293664-15293683 | None:intergenic | 35.0% | |
| ACTGCCTTAAACTGTTAAAC+CGG | - | chr1_2:15293899-15293918 | Msa0058730:intron | 35.0% | |
| !!! | ATATTTTGGCGGTTCAATCA+CGG | + | chr1_2:15293940-15293959 | None:intergenic | 35.0% |
| !! | TTACTACGGTTCGGATATTT+TGG | + | chr1_2:15293954-15293973 | None:intergenic | 35.0% |
| AAATATCCGAACCGTAGTAA+AGG | - | chr1_2:15293954-15293973 | Msa0058730:intron | 35.0% | |
| CGTTACCAAAAATCCAAAGA+AGG | - | chr1_2:15294337-15294356 | Msa0058730:CDS | 35.0% | |
| ! | ATGAGCCTTCTTTGGATTTT+TGG | + | chr1_2:15294345-15294364 | None:intergenic | 35.0% |
| TTTACTTGCCATTCAGTTCT+AGG | - | chr1_2:15294369-15294388 | Msa0058730:CDS | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | + | chr1_2:15294408-15294427 | None:intergenic | 35.0% | |
| GATATTGAATCAGGTTCTTG+TGG | + | chr1_2:15294433-15294452 | None:intergenic | 35.0% | |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | - | chr1_2:15294522-15294541 | Msa0058730:intron | 35.0% |
| TCTAGTTGGTTGTCATGATT+GGG | - | chr1_2:15294523-15294542 | Msa0058730:intron | 35.0% | |
| ! | GGACCATAATTTGAAACCAT+TGG | - | chr1_2:15294678-15294697 | Msa0058730:intron | 35.0% |
| AAAACATTTAGGGGTTCCAA+TGG | + | chr1_2:15294697-15294716 | None:intergenic | 35.0% | |
| !! | GGAACCCCTAAATGTTTTTA+AGG | - | chr1_2:15294699-15294718 | Msa0058730:intron | 35.0% |
| !! | ATAGAAGCACTATAGCATAG+CGG | - | chr1_2:15294790-15294809 | Msa0058730:intron | 35.0% |
| !! | TTCAAAGTGTTGTCCAGAAA+CGG | - | chr1_2:15294860-15294879 | Msa0058730:CDS | 35.0% |
| ATGTTGTCAATCACATATCG+CGG | + | chr1_2:15294935-15294954 | None:intergenic | 35.0% | |
| !! | GATTGACAACATTGCTTTTG+TGG | - | chr1_2:15294943-15294962 | Msa0058730:intron | 35.0% |
| !! | ACAACATTGCTTTTGTGGTA+TGG | - | chr1_2:15294948-15294967 | Msa0058730:intron | 35.0% |
| TTGTTGGAATTTGAGCGTTT+CGG | + | chr1_2:15295168-15295187 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | - | chr1_2:15295168-15295187 | Msa0058730:CDS | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | - | chr1_2:15295263-15295282 | Msa0058730:CDS | 35.0% | |
| GATCCTGACATGAAAATCTT+CGG | - | chr1_2:15295295-15295314 | Msa0058730:CDS | 35.0% | |
| ! | TTTCCGAAGATTTTCATGTC+AGG | + | chr1_2:15295301-15295320 | None:intergenic | 35.0% |
| AATCTTCGGAAAATTGCCAA+AGG | - | chr1_2:15295309-15295328 | Msa0058730:CDS | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | - | chr1_2:15295316-15295335 | Msa0058730:CDS | 35.0% | |
| AAAATTGCTTCCACAACTCT+TGG | + | chr1_2:15295415-15295434 | None:intergenic | 35.0% | |
| CAATCCAAAACCTCGAAAAA+GGG | + | chr1_2:15295481-15295500 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | - | chr1_2:15295480-15295499 | Msa0058730:CDS | 35.0% |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | - | chr1_2:15295504-15295523 | Msa0058730:CDS | 35.0% |
| ! | ATGCTTAGATACCTCTTTTC+TGG | + | chr1_2:15295571-15295590 | None:intergenic | 35.0% |
| GTATCTAAGCATGCTTATGA+GGG | - | chr1_2:15295579-15295598 | Msa0058730:intron | 35.0% | |
| CATGCTTATGAGGGTAAAAA+AGG | - | chr1_2:15295588-15295607 | Msa0058730:intron | 35.0% | |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | + | chr1_2:15295707-15295726 | None:intergenic | 35.0% |
| CTTGAAGATAAAGTAGGAAC+AGG | - | chr1_2:15295719-15295738 | Msa0058730:intron | 35.0% | |
| ! | TGTGTATATCTTTGGAGGTT+TGG | - | chr1_2:15295827-15295846 | Msa0058730:intron | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | - | chr1_2:15295828-15295847 | Msa0058730:intron | 35.0% |
| !!! | AAGTCCACCTTTTGGTTCTA+CGG | - | chr1_2:15293314-15293333 | Msa0058730:CDS | 40.0% |
| ACATTTGCCGTAGAACCAAA+AGG | + | chr1_2:15293324-15293343 | None:intergenic | 40.0% | |
| !! | TTTGGTTCTACGGCAAATGT+CGG | - | chr1_2:15293324-15293343 | Msa0058730:CDS | 40.0% |
| AGTCCATCATTACAGAATGG+TGG | - | chr1_2:15293417-15293436 | Msa0058730:CDS | 40.0% | |
| TTGCCACCATTCTGTAATGA+TGG | + | chr1_2:15293423-15293442 | None:intergenic | 40.0% | |
| CGAGACAAGAGTTCTTCTAT+TGG | - | chr1_2:15293447-15293466 | Msa0058730:CDS | 40.0% | |
| TGAATTTCTTGACGCTCCTT+AGG | + | chr1_2:15293483-15293502 | None:intergenic | 40.0% | |
| !! | ATGTATTTTAGAAGCCGAGG+TGG | - | chr1_2:15293647-15293666 | Msa0058730:intron | 40.0% |
| GACTTCTTACCTCTTGAACA+TGG | + | chr1_2:15293779-15293798 | None:intergenic | 40.0% | |
| CTGCCTTAAACTGTTAAACC+GGG | - | chr1_2:15293900-15293919 | Msa0058730:intron | 40.0% | |
| AGTCCCGGTTTAACAGTTTA+AGG | + | chr1_2:15293906-15293925 | None:intergenic | 40.0% | |
| !! | CGTTAAACTGGCCTTTACTA+CGG | + | chr1_2:15293968-15293987 | None:intergenic | 40.0% |
| AACTGAACTGGACGTTAAAC+TGG | + | chr1_2:15293980-15293999 | None:intergenic | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | - | chr1_2:15294298-15294317 | Msa0058730:CDS | 40.0% | |
| TCTAGCATCCTAGAACTGAA+TGG | + | chr1_2:15294380-15294399 | None:intergenic | 40.0% | |
| !! | ATTCAGTTCTAGGATGCTAG+AGG | - | chr1_2:15294379-15294398 | Msa0058730:intron | 40.0% |
| TCTGTTCCAGAAAGAATGTC+TGG | + | chr1_2:15294483-15294502 | None:intergenic | 40.0% | |
| !! | CATTCTTTCTGGAACAGAAC+TGG | - | chr1_2:15294485-15294504 | Msa0058730:intron | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | - | chr1_2:15294509-15294528 | Msa0058730:intron | 40.0% |
| GAAACAGTGCACAAAGTTGA+TGG | + | chr1_2:15294756-15294775 | None:intergenic | 40.0% | |
| TCACATATCGCGGAAAATTG+AGG | + | chr1_2:15294925-15294944 | None:intergenic | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | - | chr1_2:15295167-15295186 | Msa0058730:CDS | 40.0% | |
| CAAATTCCAACAAGGGATCT+TGG | - | chr1_2:15295175-15295194 | Msa0058730:CDS | 40.0% | |
| AGTGAATAGTCCAAGAGTTG+TGG | - | chr1_2:15295402-15295421 | Msa0058730:CDS | 40.0% | |
| CCAATCCAAAACCTCGAAAA+AGG | + | chr1_2:15295482-15295501 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | - | chr1_2:15295479-15295498 | Msa0058730:CDS | 40.0% |
| CTCCAGAACAATGACAGAAA+AGG | + | chr1_2:15295509-15295528 | None:intergenic | 40.0% | |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | - | chr1_2:15295510-15295529 | Msa0058730:CDS | 40.0% |
| GGTATCTAAGCATGCTTATG+AGG | - | chr1_2:15295578-15295597 | Msa0058730:intron | 40.0% | |
| !! | AGGTACAGAAGCATTTCCTT+TGG | - | chr1_2:15295608-15295627 | Msa0058730:intron | 40.0% |
| TGACAGGATTCTTGTTCCAA+AGG | + | chr1_2:15295627-15295646 | None:intergenic | 40.0% | |
| TTTGCCGTAGAACCAAAAGG+TGG | + | chr1_2:15293321-15293340 | None:intergenic | 45.0% | |
| CCATTGATCGATACGAAGCA+TGG | + | chr1_2:15293563-15293582 | None:intergenic | 45.0% | |
| ! | CCATGCTTCGTATCGATCAA+TGG | - | chr1_2:15293560-15293579 | Msa0058730:intron | 45.0% |
| TGTTGATCGAGAGTTACTGC+AGG | - | chr1_2:15293678-15293697 | Msa0058730:intron | 45.0% | |
| !! | AACCATGACCGGTTTGATGT+CGG | + | chr1_2:15293877-15293896 | None:intergenic | 45.0% |
| TAAGGCAGTTGAACCATGAC+CGG | + | chr1_2:15293888-15293907 | None:intergenic | 45.0% | |
| !! | CTACGGTTCGGATATTTTGG+CGG | + | chr1_2:15293951-15293970 | None:intergenic | 45.0% |
| !! | AACTGGCCTTTACTACGGTT+CGG | + | chr1_2:15293963-15293982 | None:intergenic | 45.0% |
| AGAAACGGCGAATGCAGTAT+AGG | + | chr1_2:15294257-15294276 | None:intergenic | 45.0% | |
| GCATAGATTCCGGTGAGAAA+CGG | + | chr1_2:15294272-15294291 | None:intergenic | 45.0% | |
| ACCGGAATCTATGCTTCTGA+AGG | - | chr1_2:15294278-15294297 | Msa0058730:CDS | 45.0% | |
| ! | CCCTTCAGAAGCATAGATTC+CGG | + | chr1_2:15294282-15294301 | None:intergenic | 45.0% |
| CCGGAATCTATGCTTCTGAA+GGG | - | chr1_2:15294279-15294298 | Msa0058730:CDS | 45.0% | |
| ! | GAATCTATGCTTCTGAAGGG+TGG | - | chr1_2:15294282-15294301 | Msa0058730:CDS | 45.0% |
| AAGAATGTCTGGTCGCAATC+AGG | + | chr1_2:15294472-15294491 | None:intergenic | 45.0% | |
| TTGCGACCAGACATTCTTTC+TGG | - | chr1_2:15294474-15294493 | Msa0058730:intron | 45.0% | |
| !! | TCTTTCTGGAACAGAACTGG+AGG | - | chr1_2:15294488-15294507 | Msa0058730:intron | 45.0% |
| ATGGTCCACAACCACAATTG+CGG | + | chr1_2:15294665-15294684 | None:intergenic | 45.0% | |
| AGCATGGCATTGTAGCATTG+TGG | - | chr1_2:15294887-15294906 | Msa0058730:CDS | 45.0% | |
| TACAAGAGACTTCTCCTTGC+AGG | - | chr1_2:15295030-15295049 | Msa0058730:CDS | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | - | chr1_2:15295071-15295090 | Msa0058730:CDS | 45.0% | |
| ! | TTTTACATCGGCGTTGCAGA+GGG | + | chr1_2:15295098-15295117 | None:intergenic | 45.0% |
| TGCAACGCCGATGTAAAAGA+AGG | - | chr1_2:15295100-15295119 | Msa0058730:CDS | 45.0% | |
| ATTCCAACAAGGGATCTTGG+TGG | - | chr1_2:15295178-15295197 | Msa0058730:CDS | 45.0% | |
| !!! | ACAACACTAGCCTTTTTCGC+AGG | - | chr1_2:15295220-15295239 | Msa0058730:CDS | 45.0% |
| !!! | CAACACTAGCCTTTTTCGCA+GGG | - | chr1_2:15295221-15295240 | Msa0058730:CDS | 45.0% |
| GGAGCATGCATGGTTATGTA+AGG | - | chr1_2:15295242-15295261 | Msa0058730:CDS | 45.0% | |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | - | chr1_2:15295468-15295487 | Msa0058730:CDS | 45.0% |
| TCCAAAACCTCGAAAAAGGG+TGG | + | chr1_2:15295478-15295497 | None:intergenic | 45.0% | |
| ! | GTTGGAGCATTCTCAGGAGA+AGG | + | chr1_2:15293288-15293307 | None:intergenic | 50.0% |
| TATTGGCAGCACTGTGCCTA+AGG | - | chr1_2:15293464-15293483 | Msa0058730:CDS | 50.0% | |
| AACCGACATCAAACCGGTCA+TGG | - | chr1_2:15293872-15293891 | Msa0058730:intron | 50.0% | |
| GCGGTTCAATCACGGATTCA+CGG | + | chr1_2:15293932-15293951 | None:intergenic | 50.0% | |
| GACAAATGTGGCCGCAATTG+TGG | - | chr1_2:15294651-15294670 | Msa0058730:intron | 50.0% | |
| GTCCAGAAACGGTTGTAGCA+TGG | - | chr1_2:15294871-15294890 | Msa0058730:CDS | 50.0% | |
| TGCCATGCTACAACCGTTTC+TGG | + | chr1_2:15294876-15294895 | None:intergenic | 50.0% | |
| ! | TGTTTCTGATGGAGCCTGCA+AGG | + | chr1_2:15295047-15295066 | None:intergenic | 50.0% |
| ! | CTTTTACATCGGCGTTGCAG+AGG | + | chr1_2:15295099-15295118 | None:intergenic | 50.0% |
| GCGTTTCGGACGTATGTTTC+AGG | + | chr1_2:15295154-15295173 | None:intergenic | 50.0% | |
| TTGCCACCAAGATCCCTTGT+TGG | + | chr1_2:15295184-15295203 | None:intergenic | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | + | chr1_2:15295233-15295252 | None:intergenic | 50.0% | |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | - | chr1_2:15295232-15295251 | Msa0058730:CDS | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | - | chr1_2:15295474-15295493 | Msa0058730:CDS | 50.0% |
| ACGGATTCACGGTTCAGTCC+CGG | + | chr1_2:15293921-15293940 | None:intergenic | 55.0% | |
| CTGCATTCGCCGTTTCTCAC+CGG | - | chr1_2:15294260-15294279 | Msa0058730:CDS | 55.0% | |
| TGTGGCCGCAATTGTGGTTG+TGG | - | chr1_2:15294657-15294676 | Msa0058730:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15292684 | 15295909 | 15292684 | ID=Msa0058730;Name=Msa0058730 |
| chr1_2 | mRNA | 15292684 | 15295909 | 15292684 | ID=Msa0058730-mRNA-1;Parent=Msa0058730;Name=Msa0058730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.6|0.8|1|1|5|195|563 |
| chr1_2 | exon | 15292684 | 15293541 | 15292684 | ID=Msa0058730-mRNA-1:exon:6195;Parent=Msa0058730-mRNA-1 |
| chr1_2 | exon | 15294049 | 15294397 | 15294049 | ID=Msa0058730-mRNA-1:exon:6194;Parent=Msa0058730-mRNA-1 |
| chr1_2 | exon | 15294805 | 15294935 | 15294805 | ID=Msa0058730-mRNA-1:exon:6193;Parent=Msa0058730-mRNA-1 |
| chr1_2 | exon | 15295012 | 15295557 | 15295012 | ID=Msa0058730-mRNA-1:exon:6192;Parent=Msa0058730-mRNA-1 |
| chr1_2 | exon | 15295907 | 15295909 | 15295907 | ID=Msa0058730-mRNA-1:exon:6191;Parent=Msa0058730-mRNA-1 |
| chr1_2 | CDS | 15295907 | 15295909 | 15295907 | ID=Msa0058730-mRNA-1:cds;Parent=Msa0058730-mRNA-1 |
| chr1_2 | CDS | 15295012 | 15295557 | 15295012 | ID=Msa0058730-mRNA-1:cds;Parent=Msa0058730-mRNA-1 |
| chr1_2 | CDS | 15294805 | 15294935 | 15294805 | ID=Msa0058730-mRNA-1:cds;Parent=Msa0058730-mRNA-1 |
| chr1_2 | CDS | 15294049 | 15294397 | 15294049 | ID=Msa0058730-mRNA-1:cds;Parent=Msa0058730-mRNA-1 |
| chr1_2 | CDS | 15292879 | 15293541 | 15292879 | ID=Msa0058730-mRNA-1:cds;Parent=Msa0058730-mRNA-1 |
| chr1_2 | three_prime_UTR | 15292684 | 15292878 | 15292684 | ID=Msa0058730-mRNA-1:three_prime_utr;Parent=Msa0058730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
