Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149990 | XP_003588379.2 | 91.340 | 612 | 28 | 3 | 1 | 611 | 1 | 588 | 0.0 | 1147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149990 | sp|Q9FFN2|GLYT3_ARATH | 44.557 | 395 | 205 | 6 | 222 | 606 | 121 | 511 | 1.42e-107 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149990 | G7IB43 | 91.340 | 612 | 28 | 3 | 1 | 611 | 1 | 588 | 0.0 | 1147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002020 | Msa0149990 | 0.929425 | 7.082257e-93 | -8.615850e-47 |
| Msa0058730 | Msa0149990 | 0.920141 | 1.861461e-87 | -8.615850e-47 |
| Msa0103620 | Msa0149990 | 0.849573 | 2.964709e-60 | -8.615850e-47 |
| Msa0103640 | Msa0149990 | 0.941755 | 2.392219e-101 | -8.615850e-47 |
| Msa0149990 | Msa1212170 | 0.800464 | 1.423528e-48 | -8.615850e-47 |
| Msa0149990 | Msa1212250 | 0.800174 | 1.631072e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149990 | MtrunA17_Chr1g0146181 | 91.340 | 612 | 28 | 3 | 1 | 611 | 1 | 588 | 0.0 | 1147 |
| Msa0149990 | MtrunA17_Chr3g0140131 | 63.840 | 625 | 182 | 9 | 1 | 611 | 1 | 595 | 0.0 | 776 |
| Msa0149990 | MtrunA17_Chr7g0265381 | 79.088 | 373 | 78 | 0 | 239 | 611 | 3 | 375 | 0.0 | 640 |
| Msa0149990 | MtrunA17_Chr8g0390121 | 49.595 | 617 | 283 | 8 | 5 | 607 | 5 | 607 | 0.0 | 585 |
| Msa0149990 | MtrunA17_Chr3g0140141 | 63.980 | 397 | 143 | 0 | 211 | 607 | 153 | 549 | 0.0 | 576 |
| Msa0149990 | MtrunA17_Chr1g0197381 | 64.402 | 368 | 125 | 2 | 240 | 606 | 182 | 544 | 1.53e-177 | 514 |
| Msa0149990 | MtrunA17_Chr4g0055991 | 60.215 | 372 | 142 | 4 | 241 | 606 | 161 | 532 | 1.10e-161 | 473 |
| Msa0149990 | MtrunA17_Chr7g0265451 | 42.890 | 429 | 222 | 8 | 192 | 606 | 92 | 511 | 6.34e-116 | 355 |
| Msa0149990 | MtrunA17_Chr3g0131051 | 44.591 | 379 | 195 | 4 | 239 | 606 | 113 | 487 | 3.30e-113 | 347 |
| Msa0149990 | MtrunA17_Chr7g0265461 | 45.867 | 375 | 192 | 4 | 239 | 606 | 24 | 394 | 9.96e-113 | 343 |
| Msa0149990 | MtrunA17_Chr3g0120131 | 42.438 | 443 | 230 | 6 | 180 | 606 | 45 | 478 | 3.50e-107 | 331 |
| Msa0149990 | MtrunA17_Chr1g0179651 | 46.176 | 340 | 173 | 5 | 272 | 606 | 1 | 335 | 9.03e-103 | 315 |
| Msa0149990 | MtrunA17_Chr3g0119721 | 46.707 | 334 | 171 | 3 | 276 | 606 | 11 | 340 | 8.94e-100 | 307 |
| Msa0149990 | MtrunA17_Chr3g0137491 | 45.161 | 341 | 179 | 4 | 271 | 606 | 50 | 387 | 1.75e-95 | 298 |
| Msa0149990 | MtrunA17_Chr4g0064471 | 38.551 | 428 | 230 | 9 | 208 | 606 | 43 | 466 | 1.14e-91 | 291 |
| Msa0149990 | MtrunA17_Chr4g0064411 | 41.085 | 387 | 201 | 7 | 239 | 606 | 80 | 458 | 4.09e-88 | 281 |
| Msa0149990 | MtrunA17_Chr4g0064461 | 39.437 | 355 | 196 | 8 | 264 | 606 | 114 | 461 | 3.21e-78 | 256 |
| Msa0149990 | MtrunA17_Chr5g0411991 | 35.838 | 346 | 205 | 9 | 263 | 602 | 73 | 407 | 7.42e-73 | 239 |
| Msa0149990 | MtrunA17_Chr7g0253441 | 33.835 | 399 | 214 | 15 | 227 | 605 | 108 | 476 | 3.85e-57 | 200 |
| Msa0149990 | MtrunA17_Chr5g0421571 | 34.842 | 221 | 128 | 8 | 263 | 478 | 126 | 335 | 1.51e-35 | 137 |
| Msa0149990 | MtrunA17_Chr8g0385671 | 28.652 | 356 | 197 | 14 | 283 | 601 | 49 | 384 | 1.24e-25 | 109 |
| Msa0149990 | MtrunA17_Chr8g0385651 | 28.652 | 356 | 197 | 14 | 283 | 601 | 49 | 384 | 7.02e-25 | 107 |
| Msa0149990 | MtrunA17_Chr7g0254391 | 27.609 | 297 | 179 | 10 | 325 | 601 | 190 | 470 | 1.80e-18 | 89.0 |
| Msa0149990 | MtrunA17_Chr4g0028201 | 25.868 | 317 | 174 | 10 | 324 | 601 | 150 | 444 | 1.84e-18 | 88.6 |
| Msa0149990 | MtrunA17_Chr2g0320251 | 25.466 | 322 | 176 | 11 | 280 | 560 | 85 | 383 | 2.03e-18 | 88.2 |
| Msa0149990 | MtrunA17_Chr3g0092341 | 25.597 | 293 | 193 | 7 | 324 | 601 | 188 | 470 | 6.54e-17 | 84.0 |
| Msa0149990 | MtrunA17_Chr6g0460631 | 25.338 | 296 | 189 | 8 | 324 | 601 | 184 | 465 | 1.86e-16 | 82.4 |
| Msa0149990 | MtrunA17_Chr3g0122631 | 23.920 | 301 | 185 | 8 | 326 | 601 | 119 | 400 | 7.95e-15 | 77.0 |
| Msa0149990 | MtrunA17_Chr4g0043801 | 25.083 | 303 | 177 | 10 | 326 | 602 | 163 | 441 | 8.95e-15 | 77.0 |
| Msa0149990 | MtrunA17_Chr1g0159421 | 25.982 | 331 | 198 | 14 | 281 | 579 | 71 | 386 | 3.70e-12 | 68.9 |
| Msa0149990 | MtrunA17_Chr4g0039811 | 26.199 | 271 | 177 | 9 | 328 | 585 | 184 | 444 | 5.91e-12 | 68.6 |
| Msa0149990 | MtrunA17_Chr8g0377331 | 23.385 | 325 | 201 | 13 | 306 | 601 | 93 | 398 | 7.15e-12 | 67.8 |
| Msa0149990 | MtrunA17_Chr1g0200871 | 24.233 | 326 | 192 | 13 | 306 | 585 | 115 | 431 | 3.55e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149990 | AT5G25820.1 | 51.618 | 649 | 259 | 11 | 8 | 607 | 8 | 650 | 0.0 | 656 |
| Msa0149990 | AT4G32790.1 | 52.437 | 595 | 248 | 10 | 15 | 607 | 30 | 591 | 0.0 | 606 |
| Msa0149990 | AT4G32790.3 | 52.437 | 595 | 248 | 10 | 15 | 607 | 30 | 591 | 0.0 | 606 |
| Msa0149990 | AT4G32790.2 | 52.437 | 595 | 248 | 10 | 15 | 607 | 30 | 591 | 0.0 | 606 |
| Msa0149990 | AT5G19670.1 | 66.832 | 404 | 133 | 1 | 207 | 609 | 204 | 607 | 0.0 | 596 |
| Msa0149990 | AT5G19670.2 | 66.832 | 404 | 133 | 1 | 207 | 609 | 204 | 607 | 0.0 | 596 |
| Msa0149990 | AT5G11610.1 | 55.274 | 474 | 196 | 8 | 148 | 609 | 76 | 545 | 0.0 | 531 |
| Msa0149990 | AT5G37000.1 | 57.968 | 433 | 176 | 3 | 175 | 606 | 121 | 548 | 0.0 | 525 |
| Msa0149990 | AT4G16745.1 | 59.189 | 370 | 145 | 4 | 241 | 604 | 157 | 526 | 6.37e-159 | 467 |
| Msa0149990 | AT4G16745.2 | 57.778 | 360 | 146 | 4 | 241 | 594 | 157 | 516 | 4.43e-147 | 438 |
| Msa0149990 | AT5G11610.2 | 50.670 | 373 | 169 | 7 | 148 | 509 | 76 | 444 | 4.12e-124 | 374 |
| Msa0149990 | AT5G03795.1 | 44.557 | 395 | 205 | 6 | 222 | 606 | 121 | 511 | 1.44e-108 | 337 |
| Msa0149990 | AT5G25310.1 | 44.882 | 381 | 191 | 9 | 239 | 606 | 101 | 475 | 1.08e-98 | 310 |
| Msa0149990 | AT3G07620.1 | 42.857 | 385 | 202 | 5 | 236 | 606 | 74 | 454 | 1.10e-96 | 303 |
| Msa0149990 | AT5G20260.2 | 42.407 | 349 | 191 | 5 | 264 | 606 | 117 | 461 | 1.01e-89 | 286 |
| Msa0149990 | AT5G11130.1 | 41.477 | 352 | 189 | 6 | 264 | 606 | 129 | 472 | 1.41e-87 | 281 |
| Msa0149990 | AT5G20260.3 | 42.647 | 340 | 185 | 5 | 273 | 606 | 21 | 356 | 5.57e-87 | 275 |
| Msa0149990 | AT5G20260.1 | 42.943 | 333 | 180 | 5 | 280 | 606 | 1 | 329 | 7.59e-87 | 274 |
| Msa0149990 | AT3G42180.1 | 40.282 | 355 | 196 | 5 | 264 | 606 | 114 | 464 | 1.38e-85 | 275 |
| Msa0149990 | AT5G11130.2 | 41.964 | 336 | 178 | 6 | 280 | 606 | 1 | 328 | 4.61e-85 | 269 |
| Msa0149990 | AT5G33290.1 | 40.390 | 359 | 196 | 6 | 261 | 606 | 141 | 494 | 2.45e-84 | 273 |
| Msa0149990 | AT3G42180.4 | 40.413 | 339 | 186 | 5 | 280 | 606 | 1 | 335 | 3.23e-83 | 265 |
| Msa0149990 | AT5G11610.3 | 48.235 | 255 | 122 | 5 | 148 | 392 | 76 | 330 | 8.27e-74 | 240 |
| Msa0149990 | AT4G38040.1 | 37.861 | 346 | 198 | 9 | 263 | 602 | 83 | 417 | 5.69e-73 | 241 |
| Msa0149990 | AT4G38040.2 | 35.562 | 329 | 192 | 10 | 263 | 582 | 83 | 400 | 3.76e-60 | 206 |
| Msa0149990 | AT5G61840.1 | 28.090 | 356 | 199 | 14 | 283 | 601 | 48 | 383 | 1.03e-24 | 107 |
| Msa0149990 | AT1G27440.1 | 28.080 | 349 | 208 | 13 | 283 | 601 | 45 | 380 | 1.94e-24 | 106 |
| Msa0149990 | AT5G22940.1 | 25.949 | 316 | 177 | 10 | 324 | 602 | 153 | 448 | 2.23e-17 | 85.9 |
| Msa0149990 | AT5G22940.2 | 25.949 | 316 | 177 | 10 | 324 | 602 | 182 | 477 | 3.83e-17 | 85.1 |
| Msa0149990 | AT1G67410.1 | 25.970 | 335 | 199 | 13 | 300 | 601 | 88 | 406 | 1.12e-16 | 83.2 |
| Msa0149990 | AT2G28110.1 | 23.676 | 321 | 177 | 10 | 284 | 560 | 94 | 390 | 1.38e-16 | 83.2 |
| Msa0149990 | AT3G03650.1 | 25.175 | 286 | 203 | 5 | 324 | 602 | 194 | 475 | 1.42e-15 | 80.1 |
| Msa0149990 | AT3G45400.1 | 24.382 | 283 | 204 | 4 | 326 | 601 | 157 | 436 | 3.78e-14 | 75.5 |
| Msa0149990 | AT1G74680.1 | 26.022 | 269 | 184 | 7 | 324 | 582 | 150 | 413 | 1.73e-13 | 73.6 |
| Msa0149990 | AT1G21480.1 | 24.478 | 335 | 208 | 14 | 284 | 587 | 89 | 409 | 1.88e-12 | 70.1 |
| Msa0149990 | AT2G35100.1 | 23.826 | 298 | 188 | 9 | 326 | 601 | 130 | 410 | 2.02e-12 | 70.1 |
| Msa0149990 | AT5G16890.1 | 27.076 | 277 | 167 | 9 | 328 | 585 | 190 | 450 | 2.60e-12 | 70.1 |
| Msa0149990 | AT1G21480.2 | 25.256 | 293 | 175 | 13 | 284 | 546 | 89 | 367 | 2.77e-11 | 66.2 |
| Msa0149990 | AT1G34270.1 | 28.902 | 173 | 109 | 5 | 420 | 585 | 259 | 424 | 5.05e-11 | 65.9 |
| Msa0149990 | AT5G44930.3 | 25.000 | 272 | 175 | 9 | 326 | 584 | 129 | 384 | 8.14e-11 | 64.7 |
Find 103 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCGAGACATTCTTTC+TGG | 0.157404 | 1_4:-11122798 | Msa0149990:CDS |
| ATATGATCCTTCACTCTATT+TGG | 0.169874 | 1_4:-11121385 | Msa0149990:CDS |
| TTTACTTACCTTTCAGTTCT+AGG | 0.170050 | 1_4:-11122903 | Msa0149990:CDS |
| AAGAATGATCCAAATCTTTA+TGG | 0.195262 | 1_4:-11123443 | Msa0149990:CDS |
| AATAGAACATTGCCATAATT+TGG | 0.209213 | 1_4:+11124189 | None:intergenic |
| GGAAAATTGCCAAAGGTTAA+AGG | 0.210719 | 1_4:-11121731 | Msa0149990:CDS |
| CAGTATGTTGAACCAAATTA+TGG | 0.217581 | 1_4:-11124201 | Msa0149990:CDS |
| CCAATCCAAAACCTCGAAAA+AGG | 0.233899 | 1_4:+11121568 | None:intergenic |
| ATGGATACTGTTTCAATAAC+TGG | 0.238752 | 1_4:-11124033 | Msa0149990:CDS |
| ATGGAAACATTATGATAAAT+TGG | 0.239209 | 1_4:+11123419 | None:intergenic |
| GTGTATATCTTTGGAGGTTT+GGG | 0.253031 | 1_4:-11121219 | Msa0149990:three_prime_UTR |
| TAAAACAGATGAGCCTTCTT+TGG | 0.253536 | 1_4:+11122922 | None:intergenic |
| AAAGGTGGACTTAAATTTCT+TGG | 0.262697 | 1_4:+11123874 | None:intergenic |
| AAGAGATTAATATGGCTTAT+TGG | 0.263100 | 1_4:-11124252 | Msa0149990:CDS |
| TGTGTATATCTTTGGAGGTT+TGG | 0.266492 | 1_4:-11121220 | Msa0149990:three_prime_UTR |
| ATGCATGCTCCCTGCGAAAA+AGG | 0.268698 | 1_4:+11121817 | None:intergenic |
| GCGTTTCGGACGTATGTTTC+AGG | 0.278879 | 1_4:+11121896 | None:intergenic |
| AATTCAAAGTGACTTTATTA+AGG | 0.287966 | 1_4:+11121196 | None:intergenic |
| TTCTAGTTGGTTGTCATGAT+TGG | 0.288754 | 1_4:-11122750 | Msa0149990:CDS |
| AGTTGCATTAACTTTCTCTA+TGG | 0.303467 | 1_4:+11124056 | None:intergenic |
| GATCCTGACATGAAAATCTT+TGG | 0.308435 | 1_4:-11121752 | Msa0149990:CDS |
| TGTGAATTTGTGTATATCTT+TGG | 0.312781 | 1_4:-11121228 | Msa0149990:three_prime_UTR |
| ATTGTACTTTCTGATGATAT+TGG | 0.345521 | 1_4:+11124141 | None:intergenic |
| TAAATTGGACCATAAAGATT+TGG | 0.346934 | 1_4:+11123434 | None:intergenic |
| AGAGAAAGTTAATGCAACTA+TGG | 0.377379 | 1_4:-11124052 | Msa0149990:CDS |
| TTTGGATCATTCTTTACAAT+TGG | 0.380163 | 1_4:+11123452 | None:intergenic |
| GGTATCTAAGCATGCTTATG+AGG | 0.380545 | 1_4:-11121469 | Msa0149990:CDS |
| CATTCTTTCTGGAACAGAAC+TGG | 0.382167 | 1_4:-11122787 | Msa0149990:CDS |
| TTACTGTTTCCTTTAACCTT+TGG | 0.391535 | 1_4:+11121722 | None:intergenic |
| TAGAAACAAAGAGATTAATA+TGG | 0.393063 | 1_4:-11124260 | Msa0149990:CDS |
| AAATTTCTTGGTGCATTCTC+AGG | 0.395870 | 1_4:+11123886 | None:intergenic |
| AACACTGCAGTTGTAATATT+CGG | 0.396074 | 1_4:+11123832 | None:intergenic |
| TCCCAATGTTTCAATAGTAT+TGG | 0.397546 | 1_4:+11121782 | None:intergenic |
| AAAACAGATGAGCCTTCTTT+GGG | 0.402028 | 1_4:+11122923 | None:intergenic |
| AAGTACTGTATTTGTGCAAA+AGG | 0.404759 | 1_4:-11121674 | Msa0149990:CDS |
| TTTCAGGAGCTATGAATTGA+TGG | 0.405336 | 1_4:-11123082 | Msa0149990:intron |
| GGAGCATGCATGGTTATCTA+AGG | 0.412660 | 1_4:-11121805 | Msa0149990:CDS |
| TTGTTGGAATTTGAGCGTTT+CGG | 0.415130 | 1_4:+11121882 | None:intergenic |
| AGAAATTTAAGTCCACCTTT+TGG | 0.418043 | 1_4:-11123871 | Msa0149990:CDS |
| TCTAGTTGGTTGTCATGATT+GGG | 0.419172 | 1_4:-11122749 | Msa0149990:intron |
| AGGTACAGAAGCATTTCCTT+TGG | 0.434501 | 1_4:-11121439 | Msa0149990:CDS |
| AAGAATGTCTCGCTGCAATC+AGG | 0.443627 | 1_4:+11122803 | None:intergenic |
| GCCAATACTATTGAAACATT+GGG | 0.446619 | 1_4:-11121783 | Msa0149990:CDS |
| TACGCTTGGCAAACTGCATA+AGG | 0.450418 | 1_4:-11121976 | Msa0149990:CDS |
| CTTGAAGATAAAGTAGGAAC+AGG | 0.452481 | 1_4:-11121328 | Msa0149990:three_prime_UTR |
| GTAAAAGAAGGATTTGTCTT+CGG | 0.456224 | 1_4:-11121935 | Msa0149990:CDS |
| GGCCAATACTATTGAAACAT+TGG | 0.458085 | 1_4:-11121784 | Msa0149990:CDS |
| TTCTGTCATTGTTCTGGAGA+AGG | 0.459845 | 1_4:-11121537 | Msa0149990:CDS |
| TACTTTCTATTCCAGAAAAG+AGG | 0.465367 | 1_4:-11121490 | Msa0149990:CDS |
| AAAATCGCTTCCACGACTCT+TGG | 0.467339 | 1_4:+11121635 | None:intergenic |
| CTTCTCTATGCAGGCTCCAT+CGG | 0.468402 | 1_4:-11122008 | Msa0149990:intron |
| AAATTATCAGATATAATAAC+CGG | 0.469771 | 1_4:+11121599 | None:intergenic |
| ACTGTCGTGACTTCTTTAAT+CGG | 0.473806 | 1_4:+11123673 | None:intergenic |
| CTTGGTGCATTCTCAGGAGA+AGG | 0.478902 | 1_4:+11123892 | None:intergenic |
| GAATTTGTGTATATCTTTGG+AGG | 0.484052 | 1_4:-11121225 | Msa0149990:three_prime_UTR |
| TATCAGCAGCACTGTGCCTA+AGG | 0.490760 | 1_4:-11123716 | Msa0149990:CDS |
| CTCCAGAACAATGACAGAAA+AGG | 0.491004 | 1_4:+11121541 | None:intergenic |
| TGAATTTCTTGACGCTCCTT+AGG | 0.491776 | 1_4:+11123700 | None:intergenic |
| TTGCCACCGAGATCCCTTGT+TGG | 0.496706 | 1_4:+11121866 | None:intergenic |
| AGAAACGGCGAATGCAGTAT+AGG | 0.500000 | 1_4:+11123018 | None:intergenic |
| CCATGCTTCGTATCGATCAA+TGG | 0.513815 | 1_4:-11123620 | Msa0149990:intron |
| CTGCATTCGCCGTTTCTCAC+AGG | 0.520103 | 1_4:-11123012 | Msa0149990:CDS |
| GCATAGATTCCTGTGAGAAA+CGG | 0.522855 | 1_4:+11123003 | None:intergenic |
| ATCGGAAACAAAATTACGCT+TGG | 0.526748 | 1_4:-11121990 | Msa0149990:CDS |
| TGACAGGATTCTTGTTCCAA+AGG | 0.530529 | 1_4:+11121423 | None:intergenic |
| TGAAATATATCATACTTGAC+AGG | 0.536585 | 1_4:+11121407 | None:intergenic |
| TTTAGTCCATCGTCACAGAA+TGG | 0.536684 | 1_4:-11123766 | Msa0149990:CDS |
| ATGCGAATTCTTCACATACA+AGG | 0.538204 | 1_4:+11122867 | None:intergenic |
| AGTACTGTATTTGTGCAAAA+GGG | 0.542312 | 1_4:-11121673 | Msa0149990:CDS |
| CAAATTCCAACAAGGGATCT+CGG | 0.545491 | 1_4:-11121872 | Msa0149990:CDS |
| CCGACACTTGTAGAACCAAA+AGG | 0.545542 | 1_4:+11123856 | None:intergenic |
| TTGTCACAAAACAAATCTCA+AGG | 0.550297 | 1_4:-11123991 | Msa0149990:CDS |
| AGATAACTTGAAGATAAAGT+AGG | 0.551404 | 1_4:-11121334 | Msa0149990:three_prime_UTR |
| ATGATTCAAAATTGTGACAT+TGG | 0.552021 | 1_4:+11124101 | None:intergenic |
| TCAGGTCTACATAATGATGT+AGG | 0.552375 | 1_4:+11122821 | None:intergenic |
| TGCAACGCCGATGTAAAAGA+AGG | 0.554573 | 1_4:-11121947 | Msa0149990:CDS |
| AGGGTGGTTTATGAAGCTAA+TGG | 0.555086 | 1_4:-11122974 | Msa0149990:CDS |
| GGTATTGAATCAAGTTCTTG+TGG | 0.555739 | 1_4:+11122842 | None:intergenic |
| ACAGGAATCTATGCTTCTGA+AGG | 0.560079 | 1_4:-11122994 | Msa0149990:CDS |
| TTGCCACCATTCTGTGACGA+TGG | 0.563406 | 1_4:+11123760 | None:intergenic |
| TGAGTAATACCTCTTGAACA+TGG | 0.569127 | 1_4:+11123400 | None:intergenic |
| ATAATGTTTCCATGTTCAAG+AGG | 0.579284 | 1_4:-11123409 | Msa0149990:intron |
| TCTTCAAGTTATCTAGCTAG+TGG | 0.584802 | 1_4:+11121343 | None:intergenic |
| AATCTTTGGAAAATTGCCAA+AGG | 0.593584 | 1_4:-11121738 | Msa0149990:CDS |
| TACAACTGCAGTGTTATCAA+AGG | 0.594742 | 1_4:-11123824 | Msa0149990:CDS |
| CCATTGATCGATACGAAGCA+TGG | 0.598257 | 1_4:+11123620 | None:intergenic |
| TCAACATTTGAAGACCACCT+TGG | 0.608491 | 1_4:+11123515 | None:intergenic |
| TTTCAGTTCTAGGATGCTAG+AGG | 0.611661 | 1_4:-11122893 | Msa0149990:CDS |
| GTATCTAAGCATGCTTATGA+GGG | 0.611871 | 1_4:-11121468 | Msa0149990:CDS |
| GAATCTATGCTTCTGAAGGG+TGG | 0.615737 | 1_4:-11122990 | Msa0149990:CDS |
| TCTAGCATCCTAGAACTGAA+AGG | 0.616743 | 1_4:+11122895 | None:intergenic |
| AAAGTGTATGTATACAGAGA+AGG | 0.623220 | 1_4:-11123048 | Msa0149990:CDS |
| AGTGAATAGTCCAAGAGTCG+TGG | 0.626623 | 1_4:-11121645 | Msa0149990:CDS |
| AGTCCATCGTCACAGAATGG+TGG | 0.628464 | 1_4:-11123763 | Msa0149990:CDS |
| TGTCACAAAACAAATCTCAA+GGG | 0.630190 | 1_4:-11123990 | Msa0149990:CDS |
| TATTGTACCAAATAGAGTGA+AGG | 0.643007 | 1_4:+11121378 | None:intergenic |
| GAAACGCTCAAATTCCAACA+AGG | 0.653680 | 1_4:-11121880 | Msa0149990:CDS |
| TCTTTCTGGAACAGAACTGG+AGG | 0.657177 | 1_4:-11122784 | Msa0149990:CDS |
| CAGGAATCTATGCTTCTGAA+GGG | 0.659108 | 1_4:-11122993 | Msa0149990:CDS |
| AAACGCTCAAATTCCAACAA+GGG | 0.666050 | 1_4:-11121879 | Msa0149990:CDS |
| TGTTGATCAAGAGTTACTAG+AGG | 0.676250 | 1_4:-11123498 | Msa0149990:CDS |
| ACACTTGTAGAACCAAAAGG+TGG | 0.693355 | 1_4:+11123859 | None:intergenic |
| ATTCCAACAAGGGATCTCGG+TGG | 0.770272 | 1_4:-11121869 | Msa0149990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATCAGATATAATAAC+CGG | + | chr1_4:11123855-11123874 | None:intergenic | 15.0% |
| !!! | AGTAGTATATTTTTCAAATT+TGG | + | chr1_4:11123945-11123964 | None:intergenic | 15.0% |
| !! | TAGAAACAAAGAGATTAATA+TGG | - | chr1_4:11121191-11121210 | Msa0149990:three_prime_UTR | 20.0% |
| !! | ATGGAAACATTATGATAAAT+TGG | + | chr1_4:11122035-11122054 | None:intergenic | 20.0% |
| !!! | AGTATATAGGTTTTAAATTG+CGG | + | chr1_4:11122921-11122940 | None:intergenic | 20.0% |
| !!! | ATTTAAAACCTATATACTGT+TGG | - | chr1_4:11122923-11122942 | Msa0149990:CDS | 20.0% |
| !! | AATTCAAAGTGACTTTATTA+AGG | + | chr1_4:11124258-11124277 | None:intergenic | 20.0% |
| ! | AAGAGATTAATATGGCTTAT+TGG | - | chr1_4:11121199-11121218 | Msa0149990:three_prime_UTR | 25.0% |
| ! | AATAGAACATTGCCATAATT+TGG | + | chr1_4:11121265-11121284 | None:intergenic | 25.0% |
| ! | ATTGTACTTTCTGATGATAT+TGG | + | chr1_4:11121313-11121332 | None:intergenic | 25.0% |
| ! | ATGATTCAAAATTGTGACAT+TGG | + | chr1_4:11121353-11121372 | None:intergenic | 25.0% |
| !!! | TTAATGTATTTTAGAAGCCA+AGG | - | chr1_4:11121919-11121938 | Msa0149990:CDS | 25.0% |
| ! | TTTGGATCATTCTTTACAAT+TGG | + | chr1_4:11122002-11122021 | None:intergenic | 25.0% |
| ! | AAGAATGATCCAAATCTTTA+TGG | - | chr1_4:11122008-11122027 | Msa0149990:intron | 25.0% |
| ! | TAAATTGGACCATAAAGATT+TGG | + | chr1_4:11122020-11122039 | None:intergenic | 25.0% |
| !!! | CTTCTATAAGTTATTTTCGA+AGG | + | chr1_4:11122095-11122114 | None:intergenic | 25.0% |
| ! | ATTCATATTCGTGAAATTTC+AGG | + | chr1_4:11122144-11122163 | None:intergenic | 25.0% |
| ! | ACATGAAACATGATAGTTAT+TGG | - | chr1_4:11122299-11122318 | Msa0149990:intron | 25.0% |
| ! | ATAACCTTAATAGCAATTAG+GGG | + | chr1_4:11123127-11123146 | None:intergenic | 25.0% |
| ! | GATAACCTTAATAGCAATTA+GGG | + | chr1_4:11123128-11123147 | None:intergenic | 25.0% |
| ! | TGATAACCTTAATAGCAATT+AGG | + | chr1_4:11123129-11123148 | None:intergenic | 25.0% |
| !!! | TACAAAGTGTTGTCAATAAA+CGG | - | chr1_4:11123263-11123282 | Msa0149990:intron | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | + | chr1_4:11124047-11124066 | None:intergenic | 25.0% |
| ! | AGATAACTTGAAGATAAAGT+AGG | - | chr1_4:11124117-11124136 | Msa0149990:CDS | 25.0% |
| ! | CTCGAGTAAAAATATAGATA+CGG | - | chr1_4:11124191-11124210 | Msa0149990:CDS | 25.0% |
| ! | TGTGAATTTGTGTATATCTT+TGG | - | chr1_4:11124223-11124242 | Msa0149990:CDS | 25.0% |
| CAGTATGTTGAACCAAATTA+TGG | - | chr1_4:11121250-11121269 | Msa0149990:three_prime_UTR | 30.0% | |
| AGTTGCATTAACTTTCTCTA+TGG | + | chr1_4:11121398-11121417 | None:intergenic | 30.0% | |
| AGAGAAAGTTAATGCAACTA+TGG | - | chr1_4:11121399-11121418 | Msa0149990:CDS | 30.0% | |
| ATGGATACTGTTTCAATAAC+TGG | - | chr1_4:11121418-11121437 | Msa0149990:CDS | 30.0% | |
| !!! | GATTTGTTTTGTGACAATTC+TGG | + | chr1_4:11121457-11121476 | None:intergenic | 30.0% |
| TTGTCACAAAACAAATCTCA+AGG | - | chr1_4:11121460-11121479 | Msa0149990:CDS | 30.0% | |
| TGTCACAAAACAAATCTCAA+GGG | - | chr1_4:11121461-11121480 | Msa0149990:CDS | 30.0% | |
| ! | AAAGGTGGACTTAAATTTCT+TGG | + | chr1_4:11121580-11121599 | None:intergenic | 30.0% |
| ! | AGAAATTTAAGTCCACCTTT+TGG | - | chr1_4:11121580-11121599 | Msa0149990:CDS | 30.0% |
| AACACTGCAGTTGTAATATT+CGG | + | chr1_4:11121622-11121641 | None:intergenic | 30.0% | |
| ATAATGTTTCCATGTTCAAG+AGG | - | chr1_4:11122042-11122061 | Msa0149990:intron | 30.0% | |
| TTTAAAAACCGACATCAAAC+CGG | - | chr1_4:11122198-11122217 | Msa0149990:intron | 30.0% | |
| ACTGCCTTAAACTGTTAAAA+CGG | - | chr1_4:11122231-11122250 | Msa0149990:intron | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | - | chr1_4:11122403-11122422 | Msa0149990:intron | 30.0% | |
| TTTACTTACCTTTCAGTTCT+AGG | - | chr1_4:11122548-11122567 | Msa0149990:intron | 30.0% | |
| !! | TCTCGTATTTTAAATTGCGA+TGG | - | chr1_4:11122759-11122778 | Msa0149990:CDS | 30.0% |
| TTTGTCTACGATACACATTA+AGG | + | chr1_4:11122806-11122825 | None:intergenic | 30.0% | |
| CAATATAGTTGTGATTGTGA+AGG | - | chr1_4:11122865-11122884 | Msa0149990:CDS | 30.0% | |
| ! | CAATCACAGTATAAAGGTTT+TGG | + | chr1_4:11122894-11122913 | None:intergenic | 30.0% |
| ! | CCAAATTTGTCTGTACTTTT+CGG | + | chr1_4:11123000-11123019 | None:intergenic | 30.0% |
| ! | CAGTGAGAATATAAAGGTTT+TGG | + | chr1_4:11123067-11123086 | None:intergenic | 30.0% |
| CAATTGCAGTGAGAATATAA+AGG | + | chr1_4:11123073-11123092 | None:intergenic | 30.0% | |
| TTATATTCTCACTGCAATTG+TGG | - | chr1_4:11123073-11123092 | Msa0149990:CDS | 30.0% | |
| ! | TGGACTGTAATTTGAAACAA+TGG | - | chr1_4:11123099-11123118 | Msa0149990:intron | 30.0% |
| !!! | GTTTTGTTTCTATACCACAA+AGG | + | chr1_4:11123364-11123383 | None:intergenic | 30.0% |
| GTGGTATAGAAACAAAACTT+AGG | - | chr1_4:11123366-11123385 | Msa0149990:intron | 30.0% | |
| TAAAAGATACTTCTCTATGC+AGG | - | chr1_4:11123434-11123453 | Msa0149990:CDS | 30.0% | |
| ! | GACAAATCCTTCTTTTACAT+CGG | + | chr1_4:11123514-11123533 | None:intergenic | 30.0% |
| GTAAAAGAAGGATTTGTCTT+CGG | - | chr1_4:11123516-11123535 | Msa0149990:CDS | 30.0% | |
| GCCAATACTATTGAAACATT+GGG | - | chr1_4:11123668-11123687 | Msa0149990:CDS | 30.0% | |
| TCCCAATGTTTCAATAGTAT+TGG | + | chr1_4:11123672-11123691 | None:intergenic | 30.0% | |
| ! | TTTCCAAAGATTTTCATGTC+AGG | + | chr1_4:11123705-11123724 | None:intergenic | 30.0% |
| ! | AATCTTTGGAAAATTGCCAA+AGG | - | chr1_4:11123713-11123732 | Msa0149990:CDS | 30.0% |
| TTACTGTTTCCTTTAACCTT+TGG | + | chr1_4:11123732-11123751 | None:intergenic | 30.0% | |
| ! | AAGTACTGTATTTGTGCAAA+AGG | - | chr1_4:11123777-11123796 | Msa0149990:CDS | 30.0% |
| AGTACTGTATTTGTGCAAAA+GGG | - | chr1_4:11123778-11123797 | Msa0149990:CDS | 30.0% | |
| TACTTTCTATTCCAGAAAAG+AGG | - | chr1_4:11123961-11123980 | Msa0149990:CDS | 30.0% | |
| ATATGATCCTTCACTCTATT+TGG | - | chr1_4:11124066-11124085 | Msa0149990:CDS | 30.0% | |
| TATTGTACCAAATAGAGTGA+AGG | + | chr1_4:11124076-11124095 | None:intergenic | 30.0% | |
| GAATTTGTGTATATCTTTGG+AGG | - | chr1_4:11124226-11124245 | Msa0149990:CDS | 30.0% | |
| ! | AAATTTCTTGGTGCATTCTC+AGG | + | chr1_4:11121568-11121587 | None:intergenic | 35.0% |
| TACAACTGCAGTGTTATCAA+AGG | - | chr1_4:11121627-11121646 | Msa0149990:CDS | 35.0% | |
| ACTGTCGTGACTTCTTTAAT+CGG | + | chr1_4:11121781-11121800 | None:intergenic | 35.0% | |
| !! | ATGTATTTTAGAAGCCAAGG+TGG | - | chr1_4:11121922-11121941 | Msa0149990:CDS | 35.0% |
| TGTTGATCAAGAGTTACTAG+AGG | - | chr1_4:11121953-11121972 | Msa0149990:CDS | 35.0% | |
| TGAGTAATACCTCTTGAACA+TGG | + | chr1_4:11122054-11122073 | None:intergenic | 35.0% | |
| CTGCCTTAAACTGTTAAAAC+GGG | - | chr1_4:11122232-11122251 | Msa0149990:intron | 35.0% | |
| !! | AGTCCCGTTTTAACAGTTTA+AGG | + | chr1_4:11122238-11122257 | None:intergenic | 35.0% |
| !!! | GTTATTTTGGTGGTCAATCA+CGG | + | chr1_4:11122264-11122283 | None:intergenic | 35.0% |
| CATGTTTCATGTAACCACTA+CGG | + | chr1_4:11122291-11122310 | None:intergenic | 35.0% | |
| TTTCAGGAGCTATGAATTGA+TGG | - | chr1_4:11122369-11122388 | Msa0149990:intron | 35.0% | |
| TGTTACCAAAAACCCAAAGA+AGG | - | chr1_4:11122516-11122535 | Msa0149990:intron | 35.0% | |
| AAAACAGATGAGCCTTCTTT+GGG | + | chr1_4:11122531-11122550 | None:intergenic | 35.0% | |
| TAAAACAGATGAGCCTTCTT+TGG | + | chr1_4:11122532-11122551 | None:intergenic | 35.0% | |
| ATGCGAATTCTTCACATACA+AGG | + | chr1_4:11122587-11122606 | None:intergenic | 35.0% | |
| ! | GGTATTGAATCAAGTTCTTG+TGG | + | chr1_4:11122612-11122631 | None:intergenic | 35.0% |
| TCAGGTCTACATAATGATGT+AGG | + | chr1_4:11122633-11122652 | None:intergenic | 35.0% | |
| ! | TTCTAGTTGGTTGTCATGAT+TGG | - | chr1_4:11122701-11122720 | Msa0149990:intron | 35.0% |
| TCTAGTTGGTTGTCATGATT+GGG | - | chr1_4:11122702-11122721 | Msa0149990:intron | 35.0% | |
| !! | CGTATTTTAAATTGCGATGG+CGG | - | chr1_4:11122762-11122781 | Msa0149990:CDS | 35.0% |
| TAGACAAATGCTGACAAATG+TGG | - | chr1_4:11122818-11122837 | Msa0149990:CDS | 35.0% | |
| GGTTCACAATCACAGTATAA+AGG | + | chr1_4:11122900-11122919 | None:intergenic | 35.0% | |
| ACCTATATACTGTTGGAACT+TGG | - | chr1_4:11122930-11122949 | Msa0149990:CDS | 35.0% | |
| TCCAAGTTCCAACAGTATAT+AGG | + | chr1_4:11122934-11122953 | None:intergenic | 35.0% | |
| ! | TGATCGCAATTTAAAACCTG+AGG | + | chr1_4:11122959-11122978 | None:intergenic | 35.0% |
| !!! | CAGGTTTTAAATTGCGATCA+CGG | - | chr1_4:11122959-11122978 | Msa0149990:CDS | 35.0% |
| ! | CCGAAAAGTACAGACAAATT+TGG | - | chr1_4:11122997-11123016 | Msa0149990:CDS | 35.0% |
| CTACATAACAACTGCATTTG+TGG | + | chr1_4:11123032-11123051 | None:intergenic | 35.0% | |
| CAGTTGTTATGTAGTTGTGA+AGG | - | chr1_4:11123038-11123057 | Msa0149990:CDS | 35.0% | |
| AATAGCAGCACTATACATAG+CGG | - | chr1_4:11123199-11123218 | Msa0149990:intron | 35.0% | |
| ATGTTGTCAATCACATATCG+CGG | + | chr1_4:11123339-11123358 | None:intergenic | 35.0% | |
| !! | AAGCGTAATTTTGTTTCCGA+TGG | + | chr1_4:11123462-11123481 | None:intergenic | 35.0% |
| ATCGGAAACAAAATTACGCT+TGG | - | chr1_4:11123461-11123480 | Msa0149990:CDS | 35.0% | |
| TTGTTGGAATTTGAGCGTTT+CGG | + | chr1_4:11123572-11123591 | None:intergenic | 35.0% | |
| AAACGCTCAAATTCCAACAA+GGG | - | chr1_4:11123572-11123591 | Msa0149990:intron | 35.0% | |
| GGCCAATACTATTGAAACAT+TGG | - | chr1_4:11123667-11123686 | Msa0149990:CDS | 35.0% | |
| GATCCTGACATGAAAATCTT+TGG | - | chr1_4:11123699-11123718 | Msa0149990:CDS | 35.0% | |
| GGAAAATTGCCAAAGGTTAA+AGG | - | chr1_4:11123720-11123739 | Msa0149990:CDS | 35.0% | |
| ! | GATTTTCTACGAATGTGTTC+CGG | - | chr1_4:11123833-11123852 | Msa0149990:CDS | 35.0% |
| CAATCCAAAACCTCGAAAAA+GGG | + | chr1_4:11123885-11123904 | None:intergenic | 35.0% | |
| !!! | CTTTTTCGAGGTTTTGGATT+GGG | - | chr1_4:11123884-11123903 | Msa0149990:CDS | 35.0% |
| ! | ATCCTTTTCTGTCATTGTTC+TGG | - | chr1_4:11123908-11123927 | Msa0149990:CDS | 35.0% |
| ! | ATGCTTAGATACCTCTTTTC+TGG | + | chr1_4:11123975-11123994 | None:intergenic | 35.0% |
| GTATCTAAGCATGCTTATGA+GGG | - | chr1_4:11123983-11124002 | Msa0149990:CDS | 35.0% | |
| CATGCTTATGAGGGTAAAAA+AGG | - | chr1_4:11123992-11124011 | Msa0149990:CDS | 35.0% | |
| ! | TCTTCAAGTTATCTAGCTAG+TGG | + | chr1_4:11124111-11124130 | None:intergenic | 35.0% |
| CTTGAAGATAAAGTAGGAAC+AGG | - | chr1_4:11124123-11124142 | Msa0149990:CDS | 35.0% | |
| ! | TGTGTATATCTTTGGAGGTT+TGG | - | chr1_4:11124231-11124250 | Msa0149990:CDS | 35.0% |
| ! | GTGTATATCTTTGGAGGTTT+GGG | - | chr1_4:11124232-11124251 | Msa0149990:CDS | 35.0% |
| ACACTTGTAGAACCAAAAGG+TGG | + | chr1_4:11121595-11121614 | None:intergenic | 40.0% | |
| !!! | CCTTTTGGTTCTACAAGTGT+CGG | - | chr1_4:11121595-11121614 | Msa0149990:CDS | 40.0% |
| TTTAGTCCATCGTCACAGAA+TGG | - | chr1_4:11121685-11121704 | Msa0149990:CDS | 40.0% | |
| TGAATTTCTTGACGCTCCTT+AGG | + | chr1_4:11121754-11121773 | None:intergenic | 40.0% | |
| TCAACATTTGAAGACCACCT+TGG | + | chr1_4:11121939-11121958 | None:intergenic | 40.0% | |
| TTCATGTAACCACTACGGTT+CGG | + | chr1_4:11122286-11122305 | None:intergenic | 40.0% | |
| TCCATGTGACTGTAACTTTC+AGG | - | chr1_4:11122353-11122372 | Msa0149990:intron | 40.0% | |
| TCCTGAAAGTTACAGTCACA+TGG | + | chr1_4:11122357-11122376 | None:intergenic | 40.0% | |
| GCATAGATTCCTGTGAGAAA+CGG | + | chr1_4:11122451-11122470 | None:intergenic | 40.0% | |
| ACAGGAATCTATGCTTCTGA+AGG | - | chr1_4:11122457-11122476 | Msa0149990:intron | 40.0% | |
| CAGGAATCTATGCTTCTGAA+GGG | - | chr1_4:11122458-11122477 | Msa0149990:intron | 40.0% | |
| AGGGTGGTTTATGAAGCTAA+TGG | - | chr1_4:11122477-11122496 | Msa0149990:intron | 40.0% | |
| !! | ATGAGCCTTCTTTGGGTTTT+TGG | + | chr1_4:11122524-11122543 | None:intergenic | 40.0% |
| TCTAGCATCCTAGAACTGAA+AGG | + | chr1_4:11122559-11122578 | None:intergenic | 40.0% | |
| !! | TTTCAGTTCTAGGATGCTAG+AGG | - | chr1_4:11122558-11122577 | Msa0149990:intron | 40.0% |
| !! | CATTCTTTCTGGAACAGAAC+TGG | - | chr1_4:11122664-11122683 | Msa0149990:intron | 40.0% |
| !!! | GGTGCTGATCATTTTCTAGT+TGG | - | chr1_4:11122688-11122707 | Msa0149990:intron | 40.0% |
| CGATCACGGTTTCAGATATT+TGG | - | chr1_4:11122973-11122992 | Msa0149990:CDS | 40.0% | |
| ! | GGAACCCCTAATTGCTATTA+AGG | - | chr1_4:11123120-11123139 | Msa0149990:intron | 40.0% |
| GATTGACAACATTGCCTTTG+TGG | - | chr1_4:11123347-11123366 | Msa0149990:intron | 40.0% | |
| GAAACGCTCAAATTCCAACA+AGG | - | chr1_4:11123571-11123590 | Msa0149990:intron | 40.0% | |
| CAAATTCCAACAAGGGATCT+CGG | - | chr1_4:11123579-11123598 | Msa0149990:intron | 40.0% | |
| !!! | ACAACATTAGCCTTTTTCGC+AGG | - | chr1_4:11123624-11123643 | Msa0149990:CDS | 40.0% |
| !!! | CAACATTAGCCTTTTTCGCA+GGG | - | chr1_4:11123625-11123644 | Msa0149990:CDS | 40.0% |
| CCAATCCAAAACCTCGAAAA+AGG | + | chr1_4:11123886-11123905 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCGAGGTTTTGGAT+TGG | - | chr1_4:11123883-11123902 | Msa0149990:CDS | 40.0% |
| CTCCAGAACAATGACAGAAA+AGG | + | chr1_4:11123913-11123932 | None:intergenic | 40.0% | |
| !! | TTCTGTCATTGTTCTGGAGA+AGG | - | chr1_4:11123914-11123933 | Msa0149990:CDS | 40.0% |
| GGTATCTAAGCATGCTTATG+AGG | - | chr1_4:11123982-11124001 | Msa0149990:CDS | 40.0% | |
| !! | AGGTACAGAAGCATTTCCTT+TGG | - | chr1_4:11124012-11124031 | Msa0149990:CDS | 40.0% |
| TGACAGGATTCTTGTTCCAA+AGG | + | chr1_4:11124031-11124050 | None:intergenic | 40.0% | |
| CCGACACTTGTAGAACCAAA+AGG | + | chr1_4:11121598-11121617 | None:intergenic | 45.0% | |
| CCATTGATCGATACGAAGCA+TGG | + | chr1_4:11121834-11121853 | None:intergenic | 45.0% | |
| ! | CCATGCTTCGTATCGATCAA+TGG | - | chr1_4:11121831-11121850 | Msa0149990:CDS | 45.0% |
| !! | AATCCTGACCGGTTTGATGT+CGG | + | chr1_4:11122209-11122228 | None:intergenic | 45.0% |
| TAAGGCAGTTGAATCCTGAC+CGG | + | chr1_4:11122220-11122239 | None:intergenic | 45.0% | |
| !!! | CTACGGTTCGGTTATTTTGG+TGG | + | chr1_4:11122274-11122293 | None:intergenic | 45.0% |
| !!! | CCACTACGGTTCGGTTATTT+TGG | + | chr1_4:11122277-11122296 | None:intergenic | 45.0% |
| CCAAAATAACCGAACCGTAG+TGG | - | chr1_4:11122274-11122293 | Msa0149990:intron | 45.0% | |
| AGAAACGGCGAATGCAGTAT+AGG | + | chr1_4:11122436-11122455 | None:intergenic | 45.0% | |
| ! | GAATCTATGCTTCTGAAGGG+TGG | - | chr1_4:11122461-11122480 | Msa0149990:intron | 45.0% |
| AAGAATGTCTCGCTGCAATC+AGG | + | chr1_4:11122651-11122670 | None:intergenic | 45.0% | |
| TTGCAGCGAGACATTCTTTC+TGG | - | chr1_4:11122653-11122672 | Msa0149990:intron | 45.0% | |
| !! | TCTTTCTGGAACAGAACTGG+AGG | - | chr1_4:11122667-11122686 | Msa0149990:intron | 45.0% |
| GACTGCAATTGTAGTCGCAT+TGG | + | chr1_4:11122844-11122863 | None:intergenic | 45.0% | |
| TCTCACTGCAATTGTGGTTG+TGG | - | chr1_4:11123079-11123098 | Msa0149990:CDS | 45.0% | |
| AGCGTAGCATTGTAGCATAG+CGG | - | chr1_4:11123290-11123309 | Msa0149990:intron | 45.0% | |
| TACGCTTGGCAAACTGCATA+AGG | - | chr1_4:11123475-11123494 | Msa0149990:CDS | 45.0% | |
| ! | TTTTACATCGGCGTTGCAGA+GGG | + | chr1_4:11123502-11123521 | None:intergenic | 45.0% |
| TGCAACGCCGATGTAAAAGA+AGG | - | chr1_4:11123504-11123523 | Msa0149990:CDS | 45.0% | |
| GGAGCATGCATGGTTATCTA+AGG | - | chr1_4:11123646-11123665 | Msa0149990:CDS | 45.0% | |
| AGTGAATAGTCCAAGAGTCG+TGG | - | chr1_4:11123806-11123825 | Msa0149990:CDS | 45.0% | |
| AAAATCGCTTCCACGACTCT+TGG | + | chr1_4:11123819-11123838 | None:intergenic | 45.0% | |
| !! | TTTTGTGCCACCCTTTTTCG+AGG | - | chr1_4:11123872-11123891 | Msa0149990:CDS | 45.0% |
| TCCAAAACCTCGAAAAAGGG+TGG | + | chr1_4:11123882-11123901 | None:intergenic | 45.0% | |
| ! | CTTGGTGCATTCTCAGGAGA+AGG | + | chr1_4:11121562-11121581 | None:intergenic | 50.0% |
| AGTCCATCGTCACAGAATGG+TGG | - | chr1_4:11121688-11121707 | Msa0149990:CDS | 50.0% | |
| TTGCCACCATTCTGTGACGA+TGG | + | chr1_4:11121694-11121713 | None:intergenic | 50.0% | |
| TATCAGCAGCACTGTGCCTA+AGG | - | chr1_4:11121735-11121754 | Msa0149990:CDS | 50.0% | |
| AAACCGACATCAAACCGGTC+AGG | - | chr1_4:11122203-11122222 | Msa0149990:intron | 50.0% | |
| TGTTGGAACTTGGAAGCCTC+AGG | - | chr1_4:11122940-11122959 | Msa0149990:CDS | 50.0% | |
| CTTCTCTATGCAGGCTCCAT+CGG | - | chr1_4:11123443-11123462 | Msa0149990:CDS | 50.0% | |
| ! | CTTTTACATCGGCGTTGCAG+AGG | + | chr1_4:11123503-11123522 | None:intergenic | 50.0% |
| GCGTTTCGGACGTATGTTTC+AGG | + | chr1_4:11123558-11123577 | None:intergenic | 50.0% | |
| ATTCCAACAAGGGATCTCGG+TGG | - | chr1_4:11123582-11123601 | Msa0149990:intron | 50.0% | |
| ATGCATGCTCCCTGCGAAAA+AGG | + | chr1_4:11123637-11123656 | None:intergenic | 50.0% | |
| !! | TTTTTCGCAGGGAGCATGCA+TGG | - | chr1_4:11123636-11123655 | Msa0149990:CDS | 50.0% |
| !!! | GCCACCCTTTTTCGAGGTTT+TGG | - | chr1_4:11123878-11123897 | Msa0149990:CDS | 50.0% |
| CTGCATTCGCCGTTTCTCAC+AGG | - | chr1_4:11122439-11122458 | Msa0149990:intron | 55.0% | |
| TTGCCACCGAGATCCCTTGT+TGG | + | chr1_4:11123588-11123607 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 11121160 | 11124313 | 11121160 | ID=Msa0149990;Name=Msa0149990 |
| chr1_4 | mRNA | 11121160 | 11124313 | 11121160 | ID=Msa0149990-mRNA-1;Parent=Msa0149990;Name=Msa0149990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.75|1|1|1|4|195|611 |
| chr1_4 | exon | 11121160 | 11122017 | 11121160 | ID=Msa0149990-mRNA-1:exon:4659;Parent=Msa0149990-mRNA-1 |
| chr1_4 | exon | 11122750 | 11123098 | 11122750 | ID=Msa0149990-mRNA-1:exon:4658;Parent=Msa0149990-mRNA-1 |
| chr1_4 | exon | 11123410 | 11123540 | 11123410 | ID=Msa0149990-mRNA-1:exon:4657;Parent=Msa0149990-mRNA-1 |
| chr1_4 | exon | 11123621 | 11124313 | 11123621 | ID=Msa0149990-mRNA-1:exon:4656;Parent=Msa0149990-mRNA-1 |
| chr1_4 | CDS | 11123621 | 11124313 | 11123621 | ID=Msa0149990-mRNA-1:cds;Parent=Msa0149990-mRNA-1 |
| chr1_4 | CDS | 11123410 | 11123540 | 11123410 | ID=Msa0149990-mRNA-1:cds;Parent=Msa0149990-mRNA-1 |
| chr1_4 | CDS | 11122750 | 11123098 | 11122750 | ID=Msa0149990-mRNA-1:cds;Parent=Msa0149990-mRNA-1 |
| chr1_4 | CDS | 11121355 | 11122017 | 11121355 | ID=Msa0149990-mRNA-1:cds;Parent=Msa0149990-mRNA-1 |
| chr1_4 | three_prime_UTR | 11121160 | 11121354 | 11121160 | ID=Msa0149990-mRNA-1:three_prime_utr;Parent=Msa0149990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
