Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104140 | sp|Q9LIQ9|BLI_ARATH | 49.373 | 399 | 184 | 4 | 274 | 659 | 241 | 634 | 2.13e-108 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104140 | A0A072VST2 | 90.803 | 685 | 37 | 6 | 1 | 659 | 1 | 685 | 0.0 | 1194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028340 | Msa0104140 | 0.817603 | 3.026741e-52 | -8.615850e-47 |
| Msa0076170 | Msa0104140 | 0.831254 | 1.852155e-55 | -8.615850e-47 |
| Msa0089980 | Msa0104140 | 0.808943 | 2.416265e-50 | -8.615850e-47 |
| Msa0090010 | Msa0104140 | 0.805115 | 1.559871e-49 | -8.615850e-47 |
| Msa0104140 | Msa0124200 | 0.817014 | 4.107885e-52 | -8.615850e-47 |
| Msa0104140 | Msa0168570 | 0.822066 | 2.889568e-53 | -8.615850e-47 |
| Msa0104140 | Msa0186410 | 0.819732 | 9.953159e-53 | -8.615850e-47 |
| Msa0104140 | Msa0784220 | 0.808256 | 3.386385e-50 | -8.615850e-47 |
| Msa0104140 | Msa1267040 | 0.804625 | 1.974536e-49 | -8.615850e-47 |
| Msa0104140 | Msa1267170 | 0.801298 | 9.620160e-49 | -8.615850e-47 |
| Msa0104140 | Msa1393820 | 0.807926 | 3.981049e-50 | -8.615850e-47 |
| Msa0104140 | Msa1464370 | 0.810689 | 1.017462e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104140 | MtrunA17_Chr1g0169181 | 90.803 | 685 | 37 | 6 | 1 | 659 | 1 | 685 | 0.0 | 1194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104140 | AT3G23980.1 | 49.373 | 399 | 184 | 4 | 274 | 659 | 241 | 634 | 2.16e-109 | 346 |
Find 136 sgRNAs with CRISPR-Local
Find 595 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACATGGTTCGGTTTC+TGG | 0.073450 | 1_3:-11654880 | Msa0104140:CDS |
| GCACAGGCTGTTTCTGATTT+TGG | 0.108677 | 1_3:+11655484 | None:intergenic |
| TAATAAATGAATGAATAATT+TGG | 0.183844 | 1_3:+11657546 | None:intergenic |
| TGCAGATTTCTCTCTCTTCT+TGG | 0.184341 | 1_3:+11657467 | None:intergenic |
| TTTCTCTCTCTTCTTGGTTT+GGG | 0.189238 | 1_3:+11657473 | None:intergenic |
| AAATGTTGCTAGACCTTCTA+TGG | 0.202624 | 1_3:-11654543 | Msa0104140:CDS |
| TTGAAAATTGAAACGTTAAA+AGG | 0.212207 | 1_3:+11657379 | None:intergenic |
| TAACCAATGGAATCATATTT+AGG | 0.224019 | 1_3:+11654659 | None:intergenic |
| TCTACATCTACCGAGGATTT+AGG | 0.246320 | 1_3:-11648599 | Msa0104140:intron |
| GAAACTACACATTCATCTTT+TGG | 0.250935 | 1_3:-11647958 | Msa0104140:CDS |
| ATCAAATTGTTTCTGCGATC+TGG | 0.257871 | 1_3:-11657346 | Msa0104140:five_prime_UTR |
| AAAGATGAATGTGTAGTTTC+AGG | 0.266863 | 1_3:+11647961 | None:intergenic |
| ATTTCTCTCTCTTCTTGGTT+TGG | 0.271284 | 1_3:+11657472 | None:intergenic |
| TAGTGTCTTCAGGTGGCTTA+TGG | 0.274534 | 1_3:+11654432 | None:intergenic |
| TCCGTTGATGTTGAATTTAT+TGG | 0.276314 | 1_3:+11654608 | None:intergenic |
| ACAGAATTGTTACTCTTGTT+TGG | 0.277700 | 1_3:+11655024 | None:intergenic |
| GCCAGATGATGCAGTCTTCT+TGG | 0.288764 | 1_3:+11655530 | None:intergenic |
| TGATGAGCGTGCCAAGTTAT+TGG | 0.288852 | 1_3:-11652319 | Msa0104140:CDS |
| CTCTTCAAATTTCTTCAATT+CGG | 0.290013 | 1_3:-11657317 | Msa0104140:five_prime_UTR |
| GGTTAAACAAATTCACATTC+TGG | 0.291107 | 1_3:+11655373 | None:intergenic |
| AATAAAACAAATGATATATA+TGG | 0.294067 | 1_3:-11655183 | Msa0104140:CDS |
| TCTTGCTCAGGTTGATAAAA+TGG | 0.308431 | 1_3:+11654515 | None:intergenic |
| ACTAGTCAGTCCAGCCTTCA+TGG | 0.315047 | 1_3:-11655063 | Msa0104140:CDS |
| GGTGAGGAAGCAAGAGCATC+TGG | 0.338208 | 1_3:-11657191 | Msa0104140:CDS |
| AAAGAAGATGTTGCTGTCTA+AGG | 0.339145 | 1_3:-11648678 | Msa0104140:CDS |
| ATGATAAGTGCTAAGGAAAA+TGG | 0.341352 | 1_3:-11654344 | Msa0104140:CDS |
| TAGTAAATTCAAATCGTTGT+AGG | 0.348022 | 1_3:-11657703 | Msa0104140:five_prime_UTR |
| TTCTAAATGACTAAACTTAG+AGG | 0.351811 | 1_3:+11654490 | None:intergenic |
| GTTCGAGTTAATGAGTTAGA+TGG | 0.361536 | 1_3:-11655450 | Msa0104140:CDS |
| GACTGAAAATTATAATCATC+AGG | 0.365639 | 1_3:-11653086 | Msa0104140:intron |
| TGATGATGTGTTCAGGTGTT+TGG | 0.367009 | 1_3:+11657610 | None:intergenic |
| TTCTCAAATGGCGTCGGCTC+AGG | 0.367856 | 1_3:-11657212 | Msa0104140:exon |
| GTGGTGGTGATGATGTGTTC+AGG | 0.382787 | 1_3:+11657603 | None:intergenic |
| TCTAAGGTACGAAAGGCTTC+AGG | 0.388140 | 1_3:-11648662 | Msa0104140:CDS |
| ATTTATTGGTGAATGGTTAG+AGG | 0.390404 | 1_3:+11654622 | None:intergenic |
| GTTTGGTGTACTAATTTGTT+GGG | 0.390480 | 1_3:+11657627 | None:intergenic |
| TAGTGGCTCTTCACATGGTT+CGG | 0.395243 | 1_3:-11654887 | Msa0104140:CDS |
| AACTTAGAGGCATCTTGCTC+AGG | 0.396828 | 1_3:+11654503 | None:intergenic |
| AGTGATTTGCCTAGTCTTCA+TGG | 0.398609 | 1_3:-11654692 | Msa0104140:CDS |
| AGTCTTCTTGGCCCGCTCTT+CGG | 0.399061 | 1_3:+11655542 | None:intergenic |
| CAAATCACTATCAGATCTAA+TGG | 0.399113 | 1_3:+11654706 | None:intergenic |
| AAGACCCTTGATTACTACTT+TGG | 0.399332 | 1_3:+11655352 | None:intergenic |
| GTACGAAAGGCTTCAGGATT+CGG | 0.402189 | 1_3:-11648656 | Msa0104140:CDS |
| AATTGTTACTCTTGTTTGGC+TGG | 0.402249 | 1_3:+11655028 | None:intergenic |
| CGGATTCGTTGCAACGTGAA+TGG | 0.414389 | 1_3:-11657297 | Msa0104140:five_prime_UTR |
| ATCCGAAGTCATTGGCTTAG+AGG | 0.414659 | 1_3:-11652295 | Msa0104140:CDS |
| AATTCTAGCACTTTGGATAG+TGG | 0.418051 | 1_3:-11654904 | Msa0104140:CDS |
| CAATCAATTGAAATCAGAAA+TGG | 0.420675 | 1_3:-11652710 | Msa0104140:CDS |
| ATAATTTGGCTCTCTCTCTC+TGG | 0.421701 | 1_3:+11657560 | None:intergenic |
| AAGCAGAAATTTCTTCATAC+AGG | 0.424586 | 1_3:-11651006 | Msa0104140:intron |
| GCCAAGAAGACTGCATCATC+TGG | 0.425512 | 1_3:-11655531 | Msa0104140:CDS |
| TCCATTCATTCCATGAAGGC+TGG | 0.430594 | 1_3:+11655053 | None:intergenic |
| ATGTGTAGTTTCAGGAACTA+TGG | 0.430689 | 1_3:+11647969 | None:intergenic |
| ACCTTCTTGAAGAGCATCAA+TGG | 0.439176 | 1_3:+11650113 | None:intergenic |
| TCAAATTGTTTCTGCGATCT+GGG | 0.439587 | 1_3:-11657345 | Msa0104140:five_prime_UTR |
| TGTTTGGTGTACTAATTTGT+TGG | 0.442968 | 1_3:+11657626 | None:intergenic |
| AGAAGAATTGATGAAATCCT+TGG | 0.447637 | 1_3:-11647624 | Msa0104140:CDS |
| TCAAGCAGCAATGACACATC+AGG | 0.457870 | 1_3:-11654467 | Msa0104140:CDS |
| GCCGACAAATTCTAGCACTT+TGG | 0.465447 | 1_3:-11654911 | Msa0104140:CDS |
| TCCAAAGTGCTAGAATTTGT+CGG | 0.465999 | 1_3:+11654910 | None:intergenic |
| TCCAGCCTTCATGGAATGAA+TGG | 0.470214 | 1_3:-11655054 | Msa0104140:CDS |
| ATTGTCATTGATTTCTGTGT+TGG | 0.472642 | 1_3:+11648026 | None:intergenic |
| ATGTTGAATTTATTGGTGAA+TGG | 0.472862 | 1_3:+11654615 | None:intergenic |
| TGAAATGAAAATGACTAAAG+AGG | 0.481402 | 1_3:+11657654 | None:intergenic |
| TTCTCTCTCTTCTTGGTTTG+GGG | 0.483486 | 1_3:+11657474 | None:intergenic |
| AAGCAAGAGCATCTGGAAGC+TGG | 0.488321 | 1_3:-11657184 | Msa0104140:CDS |
| TTTAGAGAATCAAGAAAAGA+TGG | 0.488430 | 1_3:+11654563 | None:intergenic |
| TTAAAAGGAATTGAAAGTGT+TGG | 0.490509 | 1_3:+11657394 | None:intergenic |
| TCTGTGTTGGAGTTTGAAGC+AGG | 0.494362 | 1_3:+11648039 | None:intergenic |
| TTCACATCAACAGGTTGAGC+TGG | 0.494499 | 1_3:-11652391 | Msa0104140:intron |
| ATCTGAGAGTTCAAGAATGA+AGG | 0.500940 | 1_3:-11647591 | None:intergenic |
| TTATTGGCATCCGAAGTCAT+TGG | 0.502045 | 1_3:-11652303 | Msa0104140:CDS |
| GGCTTCCATTCATTCCATGA+AGG | 0.505970 | 1_3:+11655049 | None:intergenic |
| GGCGGAGCTGTTACTGACAC+TGG | 0.507273 | 1_3:-11655405 | Msa0104140:CDS |
| GACTTCGGATGCCAATAACT+TGG | 0.509815 | 1_3:+11652308 | None:intergenic |
| TAAAATGGAGACCCCATAGA+AGG | 0.511011 | 1_3:+11654530 | None:intergenic |
| GCAAGAGATCAAAGCACAAC+TGG | 0.511320 | 1_3:-11652677 | Msa0104140:intron |
| TGGTGGTTTGTTGTTCCATA+CGG | 0.515033 | 1_3:+11655132 | None:intergenic |
| TTGGATAGTGGCTCTTCACA+TGG | 0.515846 | 1_3:-11654892 | Msa0104140:CDS |
| AGCGTAGAAAAGTACTTTGG+TGG | 0.517565 | 1_3:+11655115 | None:intergenic |
| ACCAATAAATTCAACATCAA+CGG | 0.524156 | 1_3:-11654609 | Msa0104140:CDS |
| ACCATTGATGCTCTTCAAGA+AGG | 0.525225 | 1_3:-11650114 | Msa0104140:intron |
| AGTAATCAAGGGTCTTTAGC+TGG | 0.532144 | 1_3:-11655345 | Msa0104140:intron |
| TCTGGAAGCTGGAAAACGTC+GGG | 0.532580 | 1_3:-11657173 | Msa0104140:intron |
| TTCTTTGCAACGCGCTCTTG+AGG | 0.534950 | 1_3:-11653155 | Msa0104140:CDS |
| ATACCTAAATATGATTCCAT+TGG | 0.536353 | 1_3:-11654662 | Msa0104140:CDS |
| AATGTTGCTAGACCTTCTAT+GGG | 0.541386 | 1_3:-11654542 | Msa0104140:CDS |
| TAATACATCTACCACTAGTC+CGG | 0.541808 | 1_3:-11655295 | Msa0104140:CDS |
| CTCCTCTAAGCCAATGACTT+CGG | 0.545944 | 1_3:+11652293 | None:intergenic |
| ACCACATCTGATGGCATTGG+CGG | 0.547565 | 1_3:-11655423 | Msa0104140:CDS |
| CTCAGATGATTCAAATGCCA+AGG | 0.548162 | 1_3:+11647607 | None:intergenic |
| AGTCATTGGCTTAGAGGAGA+AGG | 0.557070 | 1_3:-11652289 | Msa0104140:intron |
| ATTCCTCACTTCATAACCAA+TGG | 0.557880 | 1_3:+11654646 | None:intergenic |
| CATTAATGCACTTATTTCTG+AGG | 0.561666 | 1_3:-11647887 | Msa0104140:intron |
| ACCTGAAGACACTAAAACTG+TGG | 0.561839 | 1_3:-11654423 | Msa0104140:CDS |
| ATTCACACCGGTGGTGTTGG+TGG | 0.562626 | 1_3:-11655159 | Msa0104140:CDS |
| GTTAAAGCTTGAGAAGCAGC+TGG | 0.563480 | 1_3:-11651038 | Msa0104140:CDS |
| GAACATTCAGATATTGATGA+AGG | 0.564471 | 1_3:-11655267 | Msa0104140:CDS |
| ATCACTCTCATCTGATCATG+AGG | 0.567360 | 1_3:+11647916 | None:intergenic |
| ATCTACCACTAGTCCGGTGG+AGG | 0.567627 | 1_3:-11655289 | Msa0104140:CDS |
| ATATCTGAATGTTCCTCCAC+CGG | 0.568990 | 1_3:+11655276 | None:intergenic |
| CGGAAATCCACCAACACCAC+CGG | 0.572990 | 1_3:+11655152 | None:intergenic |
| GTTACCACATCTGATGGCAT+TGG | 0.573153 | 1_3:-11655426 | Msa0104140:CDS |
| GGAATTCACACCGGTGGTGT+TGG | 0.576102 | 1_3:-11655162 | Msa0104140:CDS |
| AGGAAACAAACCTAAATCCT+CGG | 0.580331 | 1_3:+11648589 | None:intergenic |
| TGATCATGAGGAATATTCAC+AGG | 0.581107 | 1_3:+11647928 | None:intergenic |
| TTTGGTGTACTAATTTGTTG+GGG | 0.581379 | 1_3:+11657628 | None:intergenic |
| GATGGAGTTACCACATCTGA+TGG | 0.584090 | 1_3:-11655432 | Msa0104140:CDS |
| AAGTGCTAAGGAAAATGGCA+TGG | 0.585974 | 1_3:-11654339 | Msa0104140:CDS |
| AATAAAACAAGTAAAAGAGA+TGG | 0.586995 | 1_3:-11648623 | Msa0104140:CDS |
| CAATGGTTGACTGCAAATCA+CGG | 0.587621 | 1_3:+11650130 | None:intergenic |
| CAAGAGTAACAATTCTGTGA+AGG | 0.588955 | 1_3:-11655019 | Msa0104140:CDS |
| ATTCCATTGGTTATGAAGTG+AGG | 0.589979 | 1_3:-11654649 | Msa0104140:CDS |
| TCACATGGTTCGGTTTCTGG+AGG | 0.590717 | 1_3:-11654877 | Msa0104140:intron |
| GGTGTTGGTGGATTTCCGTA+TGG | 0.595213 | 1_3:-11655147 | Msa0104140:CDS |
| ATGTTCCTCCACCGGACTAG+TGG | 0.595690 | 1_3:+11655284 | None:intergenic |
| GTTGCTGTCTAAGGTACGAA+AGG | 0.597821 | 1_3:-11648669 | Msa0104140:CDS |
| AAATGGCGTCGGCTCAGGTG+AGG | 0.606141 | 1_3:-11657207 | Msa0104140:CDS |
| ACATCAACAGGTTGAGCTGG+AGG | 0.609822 | 1_3:-11652388 | Msa0104140:intron |
| GCGGAGCTGTTACTGACACT+GGG | 0.619830 | 1_3:-11655404 | Msa0104140:CDS |
| ATAGTTGCACCATGAAGACT+AGG | 0.621060 | 1_3:+11654683 | None:intergenic |
| TACATCTACCACTAGTCCGG+TGG | 0.624763 | 1_3:-11655292 | Msa0104140:CDS |
| ATCTGGAAGCTGGAAAACGT+CGG | 0.626379 | 1_3:-11657174 | Msa0104140:CDS |
| TCCGCCAATGCCATCAGATG+TGG | 0.629114 | 1_3:+11655422 | None:intergenic |
| AAGGATTATGCAGTTACTGA+TGG | 0.642365 | 1_3:-11655000 | Msa0104140:CDS |
| GATATATATGGAATTCACAC+CGG | 0.642496 | 1_3:-11655171 | Msa0104140:CDS |
| CCTGAAGACACTAAAACTGT+GGG | 0.644563 | 1_3:-11654422 | Msa0104140:CDS |
| CACACCGATGATAAGTGCTA+AGG | 0.647322 | 1_3:-11654351 | Msa0104140:CDS |
| CCGACGCCATTTGAGAAAAG+CGG | 0.656452 | 1_3:+11657218 | None:intergenic |
| CAAGCAGCAATGACACATCA+GGG | 0.661156 | 1_3:-11654466 | Msa0104140:CDS |
| ACGCCATTTGAGAAAAGCGG+AGG | 0.662111 | 1_3:+11657221 | None:intergenic |
| TCTCTCTCGATCGATCAGAT+CGG | 0.671990 | 1_3:-11657434 | Msa0104140:five_prime_UTR |
| ATATATGGAATTCACACCGG+TGG | 0.680753 | 1_3:-11655168 | Msa0104140:CDS |
| AGATGGCTCTACATCTACCG+AGG | 0.698883 | 1_3:-11648606 | Msa0104140:CDS |
| ATGTTGCTAGACCTTCTATG+GGG | 0.757039 | 1_3:-11654541 | Msa0104140:CDS |
| TGGTTGACTGCAAATCACGG+CGG | 0.815806 | 1_3:+11650133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATATTTTATTT+TGG | + | chr1_3:11647793-11647812 | None:intergenic | 0.0% |
| !! | TAATAAATGAATGAATAATT+TGG | + | chr1_3:11647750-11647769 | None:intergenic | 10.0% |
| !!! | TTCGTTTTTTTTTTTTTTTT+AGG | - | chr1_3:11649219-11649238 | Msa0104140:intron | 10.0% |
| !! | AATAAAACAAATGATATATA+TGG | - | chr1_3:11650110-11650129 | Msa0104140:intron | 10.0% |
| !!! | ATTATTTTTTTTGAAGAATT+CGG | - | chr1_3:11653360-11653379 | Msa0104140:intron | 10.0% |
| !!! | ATTTTTAATGTTTTTTTTAG+GGG | + | chr1_3:11653436-11653455 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTAGAAAAATTAT+TGG | - | chr1_3:11654898-11654917 | Msa0104140:CDS | 10.0% |
| !!! | ATATTTTGATTATTTACTTA+TGG | + | chr1_3:11655724-11655743 | None:intergenic | 10.0% |
| !! | TAATGAAAATTGAAGAAATT+TGG | + | chr1_3:11648161-11648180 | None:intergenic | 15.0% |
| !!! | ATTTGGGTATTAATTAATTT+TGG | - | chr1_3:11648202-11648221 | Msa0104140:intron | 15.0% |
| !! | ATCTACAATTATTACAATTA+TGG | - | chr1_3:11648445-11648464 | Msa0104140:intron | 15.0% |
| !! | TCTACAATTATTACAATTAT+GGG | - | chr1_3:11648446-11648465 | Msa0104140:intron | 15.0% |
| !!! | ACAATATTTTGTACTAAATA+GGG | - | chr1_3:11648536-11648555 | Msa0104140:intron | 15.0% |
| !!! | TACAATATTTTTTGTATTTC+TGG | + | chr1_3:11648873-11648892 | None:intergenic | 15.0% |
| !!! | ATTTTCCATTTTTTTTAGAA+CGG | - | chr1_3:11649570-11649589 | Msa0104140:intron | 15.0% |
| !!! | ATATTGGTTTAAAATCAATA+AGG | + | chr1_3:11651331-11651350 | None:intergenic | 15.0% |
| !! | AATTTATATCCACAATATAT+TGG | + | chr1_3:11651347-11651366 | None:intergenic | 15.0% |
| !! | ATTGAAATAAAAACAATAAC+TGG | + | chr1_3:11651755-11651774 | None:intergenic | 15.0% |
| !! | ATATGATAAGAATTAAAAAC+TGG | + | chr1_3:11652288-11652307 | None:intergenic | 15.0% |
| !! | TATTGCTAATTAATAGATTT+AGG | - | chr1_3:11654148-11654167 | Msa0104140:intron | 15.0% |
| !!! | ATTTTTCTTTATAGTATTTG+CGG | + | chr1_3:11654335-11654354 | None:intergenic | 15.0% |
| !! | TTATTTCATTCTACTTAATA+TGG | + | chr1_3:11654636-11654655 | None:intergenic | 15.0% |
| !! | TTGAAAATTGAAACGTTAAA+AGG | + | chr1_3:11647917-11647936 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGTGTGTAATTTT+GGG | - | chr1_3:11648242-11648261 | Msa0104140:intron | 20.0% |
| !!! | CACAATATTTTGTACTAAAT+AGG | - | chr1_3:11648535-11648554 | Msa0104140:intron | 20.0% |
| !!! | ATTCTTTTTTTTGTATGAAC+CGG | - | chr1_3:11648617-11648636 | Msa0104140:CDS | 20.0% |
| !! | TCCAATGTTAAAATATTGAA+GGG | - | chr1_3:11648946-11648965 | Msa0104140:intron | 20.0% |
| !!! | TGAATTTTTGTTACTTTCTT+AGG | - | chr1_3:11649246-11649265 | Msa0104140:intron | 20.0% |
| !!! | ATAAACCGTTCTAAAAAAAA+TGG | + | chr1_3:11649578-11649597 | None:intergenic | 20.0% |
| !! | TCCCATCTTAAATAATTATT+TGG | - | chr1_3:11649694-11649713 | Msa0104140:intron | 20.0% |
| !!! | CCCAAATAATTATTTAAGAT+GGG | + | chr1_3:11649698-11649717 | None:intergenic | 20.0% |
| !! | CCCATCTTAAATAATTATTT+GGG | - | chr1_3:11649695-11649714 | Msa0104140:intron | 20.0% |
| !! | ACCCAAATAATTATTTAAGA+TGG | + | chr1_3:11649699-11649718 | None:intergenic | 20.0% |
| !!! | GATTTTAAACCAATATATTG+TGG | - | chr1_3:11651335-11651354 | Msa0104140:intron | 20.0% |
| !! | ATTCATTTAGTGCAATATTA+AGG | - | chr1_3:11651514-11651533 | Msa0104140:intron | 20.0% |
| !! | TTCATTTAGTGCAATATTAA+GGG | - | chr1_3:11651515-11651534 | Msa0104140:intron | 20.0% |
| !!! | TTGTTGTTTATAATAGTTAG+AGG | + | chr1_3:11651726-11651745 | None:intergenic | 20.0% |
| !!! | TAAGAATTATAAACTTTTGC+AGG | + | chr1_3:11651874-11651893 | None:intergenic | 20.0% |
| !! | TACGTGTTAAAAATGAAAAA+CGG | - | chr1_3:11651892-11651911 | Msa0104140:intron | 20.0% |
| !! | AGTAACTTTCTCTTATATAT+TGG | + | chr1_3:11652399-11652418 | None:intergenic | 20.0% |
| !!! | AAAATTTGAAATCGAAAAAG+AGG | + | chr1_3:11652732-11652751 | None:intergenic | 20.0% |
| !! | AAGATGACAAAAAATGTTTA+CGG | + | chr1_3:11653077-11653096 | None:intergenic | 20.0% |
| !!! | TGATTAAGATTTTCATTCAT+AGG | - | chr1_3:11653174-11653193 | Msa0104140:CDS | 20.0% |
| !!! | ATAAAGTTTAGTTTTGCTTT+TGG | - | chr1_3:11653269-11653288 | Msa0104140:intron | 20.0% |
| !!! | CTAAATTTTTCGTTAAAGAA+GGG | + | chr1_3:11653309-11653328 | None:intergenic | 20.0% |
| !!! | ACTAAATTTTTCGTTAAAGA+AGG | + | chr1_3:11653310-11653329 | None:intergenic | 20.0% |
| !! | TCTTTAACGAAAAATTTAGT+AGG | - | chr1_3:11653310-11653329 | Msa0104140:intron | 20.0% |
| !! | TGACAATATGTTTATAAGTA+GGG | + | chr1_3:11653570-11653589 | None:intergenic | 20.0% |
| !! | AGTATTTATCTTTGTATTAG+AGG | + | chr1_3:11653674-11653693 | None:intergenic | 20.0% |
| !! | TATTCAATGAATCTAAAAAG+TGG | + | chr1_3:11653725-11653744 | None:intergenic | 20.0% |
| !! | CATTGAATAATTGATGTATT+TGG | + | chr1_3:11653773-11653792 | None:intergenic | 20.0% |
| !! | TATTCAATGAATTCAAAAAG+TGG | - | chr1_3:11653784-11653803 | Msa0104140:intron | 20.0% |
| !! | ATTCAATGAATTCAAAAAGT+GGG | - | chr1_3:11653785-11653804 | Msa0104140:intron | 20.0% |
| !!! | TTTTTGCTTATAATAGTTAC+CGG | - | chr1_3:11653808-11653827 | Msa0104140:intron | 20.0% |
| !!! | ATTTTTGTCCTTAAGTTTTT+GGG | + | chr1_3:11653967-11653986 | None:intergenic | 20.0% |
| !! | CAAAACAATAAATCAAAAGT+TGG | + | chr1_3:11654195-11654214 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATTAACTTCTT+AGG | - | chr1_3:11654210-11654229 | Msa0104140:intron | 20.0% |
| !! | AAAGAAAAATGAAGATTTAG+TGG | - | chr1_3:11654345-11654364 | Msa0104140:CDS | 20.0% |
| !! | AAAGAATGAAAGAAATACTA+AGG | + | chr1_3:11654676-11654695 | None:intergenic | 20.0% |
| !! | AAAATTATTGGAAACCTAAT+TGG | - | chr1_3:11654910-11654929 | Msa0104140:CDS | 20.0% |
| !! | AAATTATTGGAAACCTAATT+GGG | - | chr1_3:11654911-11654930 | Msa0104140:CDS | 20.0% |
| !! | GTCATATTAATTCCTAATTT+AGG | - | chr1_3:11655476-11655495 | Msa0104140:CDS | 20.0% |
| !!! | TTTTGATTATTTACTTATGG+AGG | + | chr1_3:11655721-11655740 | None:intergenic | 20.0% |
| !! | AAACAAAACTAAACCAATAT+GGG | + | chr1_3:11655778-11655797 | None:intergenic | 20.0% |
| !! | AAAACAAAACTAAACCAATA+TGG | + | chr1_3:11655779-11655798 | None:intergenic | 20.0% |
| !!! | ATATTGGTTTAGTTTTGTTT+TGG | - | chr1_3:11655778-11655797 | Msa0104140:intron | 20.0% |
| !!! | TGTTCTCTTTTGATATAATT+AGG | - | chr1_3:11656129-11656148 | Msa0104140:intron | 20.0% |
| !! | TTTATGACGATACAAATATT+AGG | - | chr1_3:11656156-11656175 | Msa0104140:intron | 20.0% |
| !! | TTATGACGATACAAATATTA+GGG | - | chr1_3:11656157-11656176 | Msa0104140:intron | 20.0% |
| !! | AATAAAACAAGTAAAAGAGA+TGG | - | chr1_3:11656670-11656689 | Msa0104140:intron | 20.0% |
| !! | AAAAATCTGATATCAGATAT+TGG | + | chr1_3:11657058-11657077 | None:intergenic | 20.0% |
| ! | TGAAATGAAAATGACTAAAG+AGG | + | chr1_3:11647642-11647661 | None:intergenic | 25.0% |
| !! | TTAAAAGGAATTGAAAGTGT+TGG | + | chr1_3:11647902-11647921 | None:intergenic | 25.0% |
| ! | CTCTTCAAATTTCTTCAATT+CGG | - | chr1_3:11647976-11647995 | Msa0104140:CDS | 25.0% |
| !! | TTTCATTATTAGCTTCTTCA+AGG | - | chr1_3:11648173-11648192 | Msa0104140:intron | 25.0% |
| !! | TTCTTCAAGGTTTAGAATTT+GGG | - | chr1_3:11648186-11648205 | Msa0104140:intron | 25.0% |
| !!! | CATGTTTTTGTGTGTAATTT+TGG | - | chr1_3:11648241-11648260 | Msa0104140:intron | 25.0% |
| !! | TTGTTTAGATGATTGTGTTT+TGG | - | chr1_3:11648359-11648378 | Msa0104140:intron | 25.0% |
| !! | AGTGTTATTAATTGCGTATA+CGG | - | chr1_3:11648470-11648489 | Msa0104140:intron | 25.0% |
| ! | GTCCAATGTTAAAATATTGA+AGG | - | chr1_3:11648945-11648964 | Msa0104140:intron | 25.0% |
| !!! | ACCCTTCAATATTTTAACAT+TGG | + | chr1_3:11648950-11648969 | None:intergenic | 25.0% |
| !!! | AGATTCATTTTTGTGAAAAC+AGG | + | chr1_3:11649082-11649101 | None:intergenic | 25.0% |
| ! | TTACTTTCTTAGGTTATGTT+TGG | - | chr1_3:11649256-11649275 | Msa0104140:intron | 25.0% |
| !!! | TTAGGTTATGTTTGGTTTTA+GGG | - | chr1_3:11649264-11649283 | Msa0104140:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | + | chr1_3:11649382-11649401 | None:intergenic | 25.0% |
| ! | GTATTAAATAGCAACAATAG+CGG | - | chr1_3:11649399-11649418 | Msa0104140:intron | 25.0% |
| !!! | TTTTTTTCCAAAACTGAACA+GGG | + | chr1_3:11649545-11649564 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCAAAACTGAAC+AGG | + | chr1_3:11649546-11649565 | None:intergenic | 25.0% |
| !! | TTATTTAAGATGGGACAAAA+CGG | + | chr1_3:11649689-11649708 | None:intergenic | 25.0% |
| ! | TTTAACCAAAGTAGTAATCA+AGG | - | chr1_3:11649936-11649955 | Msa0104140:intron | 25.0% |
| ! | TTAACCAAAGTAGTAATCAA+GGG | - | chr1_3:11649937-11649956 | Msa0104140:intron | 25.0% |
| ! | ATACCTAAATATGATTCCAT+TGG | - | chr1_3:11650631-11650650 | Msa0104140:intron | 25.0% |
| ! | TAACCAATGGAATCATATTT+AGG | + | chr1_3:11650637-11650656 | None:intergenic | 25.0% |
| ! | ATGTTGAATTTATTGGTGAA+TGG | + | chr1_3:11650681-11650700 | None:intergenic | 25.0% |
| ! | ACCAATAAATTCAACATCAA+CGG | - | chr1_3:11650684-11650703 | Msa0104140:intron | 25.0% |
| ! | TTTAGAGAATCAAGAAAAGA+TGG | + | chr1_3:11650733-11650752 | None:intergenic | 25.0% |
| ! | TTCTAAATGACTAAACTTAG+AGG | + | chr1_3:11650806-11650825 | None:intergenic | 25.0% |
| !!! | TCCAGTTTTTAGTAATAATC+AGG | - | chr1_3:11650918-11650937 | Msa0104140:intron | 25.0% |
| ! | TCCTGATTATTACTAAAAAC+TGG | + | chr1_3:11650922-11650941 | None:intergenic | 25.0% |
| ! | GCACATTCATTAAAAACAAT+AGG | + | chr1_3:11651123-11651142 | None:intergenic | 25.0% |
| ! | TCATTTAGTGCAATATTAAG+GGG | - | chr1_3:11651516-11651535 | Msa0104140:intron | 25.0% |
| !!! | AACTATTTTCTAGAAAAGAG+AGG | + | chr1_3:11651783-11651802 | None:intergenic | 25.0% |
| !!! | TCTCTTTTCTAGAAAATAGT+TGG | - | chr1_3:11651782-11651801 | Msa0104140:intron | 25.0% |
| ! | AGTTAAATGAAAGAACTGTT+GGG | + | chr1_3:11651840-11651859 | None:intergenic | 25.0% |
| ! | AAGTTAAATGAAAGAACTGT+TGG | + | chr1_3:11651841-11651860 | None:intergenic | 25.0% |
| !! | AATGAAAAACGGAATCTTTT+TGG | - | chr1_3:11651903-11651922 | Msa0104140:intron | 25.0% |
| !!! | GTTGTTTCACAATTTTCAAT+GGG | - | chr1_3:11651928-11651947 | Msa0104140:intron | 25.0% |
| !! | TTGTTTCACAATTTTCAATG+GGG | - | chr1_3:11651929-11651948 | Msa0104140:intron | 25.0% |
| ! | ATATGCTGCATAAGAAAAAA+TGG | + | chr1_3:11652094-11652113 | None:intergenic | 25.0% |
| ! | GACTGAAAATTATAATCATC+AGG | - | chr1_3:11652207-11652226 | Msa0104140:intron | 25.0% |
| ! | GAAAATTATAATCATCAGGT+TGG | - | chr1_3:11652211-11652230 | Msa0104140:intron | 25.0% |
| !! | TACTTTGTTCTTTGTTACTT+TGG | - | chr1_3:11652431-11652450 | Msa0104140:intron | 25.0% |
| ! | CAATCAATTGAAATCAGAAA+TGG | - | chr1_3:11652583-11652602 | Msa0104140:intron | 25.0% |
| ! | AAATGATTACGCAAATAGAT+AGG | + | chr1_3:11652657-11652676 | None:intergenic | 25.0% |
| !! | ATCTATTTGCGTAATCATTT+TGG | - | chr1_3:11652657-11652676 | Msa0104140:intron | 25.0% |
| ! | GTGAAAATCTTAGATATATC+AGG | + | chr1_3:11652706-11652725 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTGTTGGAAAA+AGG | - | chr1_3:11652797-11652816 | Msa0104140:intron | 25.0% |
| ! | ATGATAACTCATAGAATTTG+TGG | - | chr1_3:11653496-11653515 | Msa0104140:intron | 25.0% |
| ! | GACAATATGTTTATAAGTAG+GGG | + | chr1_3:11653569-11653588 | None:intergenic | 25.0% |
| ! | CTGACAATATGTTTATAAGT+AGG | + | chr1_3:11653571-11653590 | None:intergenic | 25.0% |
| ! | CTACTTATAAACATATTGTC+AGG | - | chr1_3:11653569-11653588 | Msa0104140:intron | 25.0% |
| ! | CTAATTCATATATACTACCT+GGG | + | chr1_3:11653646-11653665 | None:intergenic | 25.0% |
| ! | TCTAATTCATATATACTACC+TGG | + | chr1_3:11653647-11653666 | None:intergenic | 25.0% |
| !!! | TATTTTTAATAGTGACCAGA+GGG | + | chr1_3:11653697-11653716 | None:intergenic | 25.0% |
| !!! | TTATTTTTAATAGTGACCAG+AGG | + | chr1_3:11653698-11653717 | None:intergenic | 25.0% |
| !! | CATTTTTGTCCTTAAGTTTT+TGG | + | chr1_3:11653968-11653987 | None:intergenic | 25.0% |
| !!! | AAAGAACGAGTTTTATGTTT+AGG | - | chr1_3:11654803-11654822 | Msa0104140:intron | 25.0% |
| ! | TATAATCAGCTTAAAATGTG+CGG | + | chr1_3:11655103-11655122 | None:intergenic | 25.0% |
| ! | AGATAGAAAAATAGCATCTT+CGG | - | chr1_3:11655417-11655436 | Msa0104140:CDS | 25.0% |
| ! | AAACAAGATAGAAGAAAGAT+TGG | + | chr1_3:11655448-11655467 | None:intergenic | 25.0% |
| ! | AAACTAAAGGATCCTAAATT+AGG | + | chr1_3:11655491-11655510 | None:intergenic | 25.0% |
| !!! | TCTCTTATTGGTTTAAATCA+TGG | - | chr1_3:11655581-11655600 | Msa0104140:intron | 25.0% |
| !!! | TTAGTTTTGTTTTGGACAAA+TGG | - | chr1_3:11655786-11655805 | Msa0104140:intron | 25.0% |
| !! | ATACACTTTTCACTATTTTC+TGG | - | chr1_3:11656038-11656057 | Msa0104140:intron | 25.0% |
| !!! | TTCCAACTTTTTTATAGCTT+TGG | - | chr1_3:11656204-11656223 | Msa0104140:intron | 25.0% |
| ! | TACCAAAGCTATAAAAAAGT+TGG | + | chr1_3:11656209-11656228 | None:intergenic | 25.0% |
| ! | TTTAGATAGTCAAAGTTTAG+TGG | + | chr1_3:11656482-11656501 | None:intergenic | 25.0% |
| !!! | CTTTTACTTGTTTTATTCTC+AGG | + | chr1_3:11656667-11656686 | None:intergenic | 25.0% |
| ! | ACAAAATAATAACCATACTG+AGG | + | chr1_3:11656727-11656746 | None:intergenic | 25.0% |
| !!! | TGGTTATTATTTTGTCTGTT+AGG | - | chr1_3:11656732-11656751 | Msa0104140:intron | 25.0% |
| ! | TTCTTAAAAGTGAATAAGAG+AGG | - | chr1_3:11656831-11656850 | Msa0104140:intron | 25.0% |
| !!! | TGAAGAGTTTTATTGTTATC+AGG | - | chr1_3:11656903-11656922 | Msa0104140:intron | 25.0% |
| ! | AAACAAAATGAACCTAAACT+AGG | + | chr1_3:11656967-11656986 | None:intergenic | 25.0% |
| !! | CGAGAAAATTTTATAAATGC+TGG | + | chr1_3:11657081-11657100 | None:intergenic | 25.0% |
| ! | TTTAATCAGGTATTATTTGC+CGG | + | chr1_3:11657145-11657164 | None:intergenic | 25.0% |
| ! | CTAAAAATGTCCAAATGATT+GGG | + | chr1_3:11657173-11657192 | None:intergenic | 25.0% |
| !!! | AATCATTTGGACATTTTTAG+CGG | - | chr1_3:11657173-11657192 | Msa0104140:intron | 25.0% |
| !! | TTTGGTGTACTAATTTGTTG+GGG | + | chr1_3:11647668-11647687 | None:intergenic | 30.0% |
| !! | GTTTGGTGTACTAATTTGTT+GGG | + | chr1_3:11647669-11647688 | None:intergenic | 30.0% |
| !! | TGTTTGGTGTACTAATTTGT+TGG | + | chr1_3:11647670-11647689 | None:intergenic | 30.0% |
| !!! | TTTAAACGTTTTTGGTTTGG+TGG | + | chr1_3:11647712-11647731 | None:intergenic | 30.0% |
| !!! | GGTTTTAAACGTTTTTGGTT+TGG | + | chr1_3:11647715-11647734 | None:intergenic | 30.0% |
| !!! | TCTCTGGTTTTAAACGTTTT+TGG | + | chr1_3:11647720-11647739 | None:intergenic | 30.0% |
| ! | CTTCTTCAAGGTTTAGAATT+TGG | - | chr1_3:11648185-11648204 | Msa0104140:intron | 30.0% |
| !!! | TTTGTGTGTAATTTTGGGAT+TGG | - | chr1_3:11648247-11648266 | Msa0104140:intron | 30.0% |
| TTGTGTATGTGATAGTAATG+TGG | - | chr1_3:11648287-11648306 | Msa0104140:intron | 30.0% | |
| TGTGTATGTGATAGTAATGT+GGG | - | chr1_3:11648288-11648307 | Msa0104140:intron | 30.0% | |
| CAATCTGGATCAATAAAACT+TGG | - | chr1_3:11648792-11648811 | Msa0104140:intron | 30.0% | |
| TGAGAACTGAGAACAAAAAA+TGG | + | chr1_3:11648909-11648928 | None:intergenic | 30.0% | |
| AAAGTAGTCTATTCTGTTGT+TGG | - | chr1_3:11649153-11649172 | Msa0104140:intron | 30.0% | |
| !!! | CTTAGGTTATGTTTGGTTTT+AGG | - | chr1_3:11649263-11649282 | Msa0104140:intron | 30.0% |
| ATAGAACTATTGTTGCATAG+CGG | + | chr1_3:11649346-11649365 | None:intergenic | 30.0% | |
| ! | CTGCTATTTAACAACATTGA+AGG | - | chr1_3:11649473-11649492 | Msa0104140:intron | 30.0% |
| !! | GTATAGAATTTTAGTGTGTC+TGG | - | chr1_3:11649506-11649525 | Msa0104140:intron | 30.0% |
| GGTTAAACAAATTCACATTC+TGG | + | chr1_3:11649923-11649942 | None:intergenic | 30.0% | |
| GAACATTCAGATATTGATGA+AGG | - | chr1_3:11650026-11650045 | Msa0104140:intron | 30.0% | |
| GATATATATGGAATTCACAC+CGG | - | chr1_3:11650122-11650141 | Msa0104140:CDS | 30.0% | |
| ACAGAATTGTTACTCTTGTT+TGG | + | chr1_3:11650272-11650291 | None:intergenic | 30.0% | |
| ! | ATGATTTTTGACGGAAAGTA+AGG | + | chr1_3:11650326-11650345 | None:intergenic | 30.0% |
| ! | TTCTCACGTATGATTTTTGA+CGG | + | chr1_3:11650335-11650354 | None:intergenic | 30.0% |
| ! | CTGTAGAAGCACAAAAATAA+AGG | + | chr1_3:11650453-11650472 | None:intergenic | 30.0% |
| CACAATATATGATGTACTAC+AGG | - | chr1_3:11650529-11650548 | Msa0104140:intron | 30.0% | |
| CAAATCACTATCAGATCTAA+TGG | + | chr1_3:11650590-11650609 | None:intergenic | 30.0% | |
| ATTTATTGGTGAATGGTTAG+AGG | + | chr1_3:11650674-11650693 | None:intergenic | 30.0% | |
| TCCGTTGATGTTGAATTTAT+TGG | + | chr1_3:11650688-11650707 | None:intergenic | 30.0% | |
| ! | TTTTCCTTAGCACTTATCAT+CGG | + | chr1_3:11650949-11650968 | None:intergenic | 30.0% |
| ATGATAAGTGCTAAGGAAAA+TGG | - | chr1_3:11650949-11650968 | Msa0104140:intron | 30.0% | |
| !!! | AGACTTTTCAACTTTAGAAC+AGG | - | chr1_3:11651014-11651033 | Msa0104140:CDS | 30.0% |
| TTTGTAGATGTTCAAGCATT+TGG | - | chr1_3:11651166-11651185 | Msa0104140:intron | 30.0% | |
| TTTGCAACCAATGAAAAGTT+AGG | + | chr1_3:11651249-11651268 | None:intergenic | 30.0% | |
| !! | AACTTTTCATTGGTTGCAAA+AGG | - | chr1_3:11651249-11651268 | Msa0104140:intron | 30.0% |
| TCATACTGCATAAATCATGT+TGG | + | chr1_3:11651305-11651324 | None:intergenic | 30.0% | |
| GGTTATGTATACCAATATTC+TGG | + | chr1_3:11651400-11651419 | None:intergenic | 30.0% | |
| ACATAACCTCATTATTAAGC+AGG | - | chr1_3:11651412-11651431 | Msa0104140:intron | 30.0% | |
| CATAACCTCATTATTAAGCA+GGG | - | chr1_3:11651413-11651432 | Msa0104140:intron | 30.0% | |
| ! | ATTTTCCCTGCTTAATAATG+AGG | + | chr1_3:11651421-11651440 | None:intergenic | 30.0% |
| CATTTAGTGCAATATTAAGG+GGG | - | chr1_3:11651517-11651536 | Msa0104140:intron | 30.0% | |
| !!! | TACCTTGTTTTTTACACAAG+AGG | + | chr1_3:11651611-11651630 | None:intergenic | 30.0% |
| CTTGTGTAAAAAACAAGGTA+AGG | - | chr1_3:11651611-11651630 | Msa0104140:intron | 30.0% | |
| !! | TATAAACTTTTGCAGGTTGA+TGG | + | chr1_3:11651867-11651886 | None:intergenic | 30.0% |
| !! | CGTTGTTTCACAATTTTCAA+TGG | - | chr1_3:11651927-11651946 | Msa0104140:intron | 30.0% |
| ! | TGTTTCACAATTTTCAATGG+GGG | - | chr1_3:11651930-11651949 | Msa0104140:intron | 30.0% |
| AGAAAAATCGTCAATACCAA+TGG | + | chr1_3:11652342-11652361 | None:intergenic | 30.0% | |
| CTTTCTCTTATATATTGGAC+TGG | + | chr1_3:11652394-11652413 | None:intergenic | 30.0% | |
| GCGTTATTTGTACTCTAATT+TGG | - | chr1_3:11652453-11652472 | Msa0104140:intron | 30.0% | |
| !! | ACTGTTGACAATGTTTTTGT+TGG | - | chr1_3:11652790-11652809 | Msa0104140:intron | 30.0% |
| TAACTCATAGAATTTGTGGT+TGG | - | chr1_3:11653500-11653519 | Msa0104140:intron | 30.0% | |
| AACTCATAGAATTTGTGGTT+GGG | - | chr1_3:11653501-11653520 | Msa0104140:intron | 30.0% | |
| ! | AGGGAGTATATATCAATTGT+AGG | - | chr1_3:11653831-11653850 | Msa0104140:intron | 30.0% |
| AAAATTATATCTGCATTGCC+TGG | - | chr1_3:11654009-11654028 | Msa0104140:intron | 30.0% | |
| ! | GGTGATGATTTTATTAAACC+AGG | + | chr1_3:11654030-11654049 | None:intergenic | 30.0% |
| AATCACATCACTCTATATCA+CGG | + | chr1_3:11654061-11654080 | None:intergenic | 30.0% | |
| AAGCAGAAATTTCTTCATAC+AGG | - | chr1_3:11654287-11654306 | Msa0104140:CDS | 30.0% | |
| ! | ATTCTTTTGCTTGTGATTGA+AGG | - | chr1_3:11654689-11654708 | Msa0104140:CDS | 30.0% |
| GAGTACTTCAATTCAAGTAA+AGG | + | chr1_3:11654724-11654743 | None:intergenic | 30.0% | |
| AAACCTTAGTAAAAGAAAGC+TGG | + | chr1_3:11654748-11654767 | None:intergenic | 30.0% | |
| AAATTAGCAAGCATTACTGT+AGG | + | chr1_3:11654837-11654856 | None:intergenic | 30.0% | |
| ! | TACAGTAATGCTTGCTAATT+TGG | - | chr1_3:11654836-11654855 | Msa0104140:intron | 30.0% |
| TTTAATTATCCCAGCAGTTT+GGG | - | chr1_3:11655217-11655236 | Msa0104140:CDS | 30.0% | |
| ! | TTGTCGTTGAAATTTTCTCT+TGG | - | chr1_3:11655276-11655295 | Msa0104140:CDS | 30.0% |
| TTTGAAAGAAGCAAAACATC+AGG | - | chr1_3:11655359-11655378 | Msa0104140:intron | 30.0% | |
| AAGCAAAACATCAGGATTAA+GGG | - | chr1_3:11655367-11655386 | Msa0104140:CDS | 30.0% | |
| TCTAATACTCACTCTCTTAT+TGG | - | chr1_3:11655569-11655588 | Msa0104140:CDS | 30.0% | |
| !! | CTTATTGGTTTAAATCATGG+TGG | - | chr1_3:11655584-11655603 | Msa0104140:intron | 30.0% |
| GACATACAATGAATTAAACC+AGG | - | chr1_3:11655645-11655664 | Msa0104140:intron | 30.0% | |
| ! | ATTTAACGGTGCTTTTATGA+TGG | - | chr1_3:11655742-11655761 | Msa0104140:intron | 30.0% |
| ATGTCTGATATGATACATTC+AGG | - | chr1_3:11655942-11655961 | Msa0104140:intron | 30.0% | |
| CCAATTAAAAAAGAGCAAGA+AGG | + | chr1_3:11656088-11656107 | None:intergenic | 30.0% | |
| !!! | CCTTCTTGCTCTTTTTTAAT+TGG | - | chr1_3:11656085-11656104 | Msa0104140:intron | 30.0% |
| !!! | TCTTGCTCTTTTTTAATTGG+TGG | - | chr1_3:11656088-11656107 | Msa0104140:intron | 30.0% |
| AAAAGTTGGAACTAGAGAAT+TGG | + | chr1_3:11656195-11656214 | None:intergenic | 30.0% | |
| GCAATGACAAATAATGAACA+TGG | + | chr1_3:11656584-11656603 | None:intergenic | 30.0% | |
| GTATCTATTAACAAGATGCT+TGG | - | chr1_3:11656879-11656898 | Msa0104140:intron | 30.0% | |
| ! | AATTTTCCAGCATTCATAAC+CGG | - | chr1_3:11657123-11657142 | Msa0104140:intron | 30.0% |
| ! | TTAAAGTACTCCCAATCATT+TGG | - | chr1_3:11657160-11657179 | Msa0104140:intron | 30.0% |
| GCTAAAAATGTCCAAATGAT+TGG | + | chr1_3:11657174-11657193 | None:intergenic | 30.0% | |
| !! | ATTGTCATTGATTTCTGTGT+TGG | + | chr1_3:11657270-11657289 | None:intergenic | 30.0% |
| AAAGATGAATGTGTAGTTTC+AGG | + | chr1_3:11657335-11657354 | None:intergenic | 30.0% | |
| ! | GAAACTACACATTCATCTTT+TGG | - | chr1_3:11657335-11657354 | Msa0104140:five_prime_UTR | 30.0% |
| !! | CATTAATGCACTTATTTCTG+AGG | - | chr1_3:11657406-11657425 | Msa0104140:five_prime_UTR | 30.0% |
| AGCTACAGTAAAATGCTATA+CGG | + | chr1_3:11657637-11657656 | None:intergenic | 30.0% | |
| AGAAGAATTGATGAAATCCT+TGG | - | chr1_3:11657669-11657688 | Msa0104140:five_prime_UTR | 30.0% | |
| !! | CAAATCGTTGTAGGTTTTGA+TGG | - | chr1_3:11647599-11647618 | Msa0104140:CDS | 35.0% |
| TTTCTCTCTCTTCTTGGTTT+GGG | + | chr1_3:11647823-11647842 | None:intergenic | 35.0% | |
| ATTTCTCTCTCTTCTTGGTT+TGG | + | chr1_3:11647824-11647843 | None:intergenic | 35.0% | |
| !! | ATCAAATTGTTTCTGCGATC+TGG | - | chr1_3:11647947-11647966 | Msa0104140:CDS | 35.0% |
| !! | TCAAATTGTTTCTGCGATCT+GGG | - | chr1_3:11647948-11647967 | Msa0104140:CDS | 35.0% |
| !!! | GATGATTGTGTTTTGGTATG+AGG | - | chr1_3:11648366-11648385 | Msa0104140:intron | 35.0% |
| !!! | ATTGTGTTTTGGTATGAGGA+GGG | - | chr1_3:11648370-11648389 | Msa0104140:intron | 35.0% |
| TAGGAAGTGATGAAAAGAAG+AGG | - | chr1_3:11648407-11648426 | Msa0104140:intron | 35.0% | |
| GATTTAACAGCATCTCAAGA+TGG | - | chr1_3:11648717-11648736 | Msa0104140:intron | 35.0% | |
| TAGTCTAGACTGAAACTCTA+GGG | + | chr1_3:11648757-11648776 | None:intergenic | 35.0% | |
| TTTCAGTCTAGACTAGAACA+TGG | - | chr1_3:11648762-11648781 | Msa0104140:intron | 35.0% | |
| TCTGGATCAATAAAACTTGG+AGG | - | chr1_3:11648795-11648814 | Msa0104140:intron | 35.0% | |
| TCAATAAAACTTGGAGGCTT+TGG | - | chr1_3:11648801-11648820 | Msa0104140:intron | 35.0% | |
| ! | TATTTATGTCTGAAGCAAGC+AGG | + | chr1_3:11648832-11648851 | None:intergenic | 35.0% |
| ATTCAACTAACTACATGCCA+TGG | - | chr1_3:11649021-11649040 | Msa0104140:intron | 35.0% | |
| !!! | ATTTTTCAAGTCTGAGCCTA+TGG | - | chr1_3:11649123-11649142 | Msa0104140:intron | 35.0% |
| GACTACTTTCTTCATTCCAT+AGG | + | chr1_3:11649142-11649161 | None:intergenic | 35.0% | |
| TAGTCTATTCTGTTGTTGGA+AGG | - | chr1_3:11649157-11649176 | Msa0104140:intron | 35.0% | |
| ! | TTAGTGTGTCTGGATTTTGT+TGG | - | chr1_3:11649516-11649535 | Msa0104140:intron | 35.0% |
| ! | GTTCGAGTTAATGAGTTAGA+TGG | - | chr1_3:11649843-11649862 | Msa0104140:intron | 35.0% |
| AAGACCCTTGATTACTACTT+TGG | + | chr1_3:11649944-11649963 | None:intergenic | 35.0% | |
| TAATACATCTACCACTAGTC+CGG | - | chr1_3:11649998-11650017 | Msa0104140:intron | 35.0% | |
| ! | AATTGTTACTCTTGTTTGGC+TGG | + | chr1_3:11650268-11650287 | None:intergenic | 35.0% |
| CAAGAGTAACAATTCTGTGA+AGG | - | chr1_3:11650274-11650293 | Msa0104140:intron | 35.0% | |
| AAGGATTATGCAGTTACTGA+TGG | - | chr1_3:11650293-11650312 | Msa0104140:intron | 35.0% | |
| ! | TCCAAAGTGCTAGAATTTGT+CGG | + | chr1_3:11650386-11650405 | None:intergenic | 35.0% |
| AATTCTAGCACTTTGGATAG+TGG | - | chr1_3:11650389-11650408 | Msa0104140:intron | 35.0% | |
| !! | TAAGTCATTGTCAGGTTGAA+TGG | + | chr1_3:11650486-11650505 | None:intergenic | 35.0% |
| ! | ATTCCATTGGTTATGAAGTG+AGG | - | chr1_3:11650644-11650663 | Msa0104140:intron | 35.0% |
| ATTCCTCACTTCATAACCAA+TGG | + | chr1_3:11650650-11650669 | None:intergenic | 35.0% | |
| AAATGTTGCTAGACCTTCTA+TGG | - | chr1_3:11650750-11650769 | Msa0104140:intron | 35.0% | |
| AATGTTGCTAGACCTTCTAT+GGG | - | chr1_3:11650751-11650770 | Msa0104140:intron | 35.0% | |
| !! | TCTTGCTCAGGTTGATAAAA+TGG | + | chr1_3:11650781-11650800 | None:intergenic | 35.0% |
| !!! | CTTTTCAACTTTAGAACAGG+TGG | - | chr1_3:11651017-11651036 | Msa0104140:CDS | 35.0% |
| ! | ATGCTGATTGTATGATGTTG+CGG | - | chr1_3:11651085-11651104 | Msa0104140:intron | 35.0% |
| TGTTCAAGCATTTGGTTGTT+AGG | - | chr1_3:11651174-11651193 | Msa0104140:intron | 35.0% | |
| GTTCAAGCATTTGGTTGTTA+GGG | - | chr1_3:11651175-11651194 | Msa0104140:intron | 35.0% | |
| TTCAAGCATTTGGTTGTTAG+GGG | - | chr1_3:11651176-11651195 | Msa0104140:intron | 35.0% | |
| ! | AAACGCACCTAACTTTTCAT+TGG | - | chr1_3:11651239-11651258 | Msa0104140:intron | 35.0% |
| TTTCCATACGTCAACTATTC+AGG | - | chr1_3:11651452-11651471 | Msa0104140:intron | 35.0% | |
| TTCCATACGTCAACTATTCA+GGG | - | chr1_3:11651453-11651472 | Msa0104140:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+AGG | - | chr1_3:11651606-11651625 | Msa0104140:intron | 35.0% | |
| AACTGTTGGGAAAACAACAT+AGG | + | chr1_3:11651827-11651846 | None:intergenic | 35.0% | |
| ! | GTTTCACAATTTTCAATGGG+GGG | - | chr1_3:11651931-11651950 | Msa0104140:intron | 35.0% |
| CACACACACATATTTGATAG+TGG | + | chr1_3:11652003-11652022 | None:intergenic | 35.0% | |
| ! | TATTTTCAACCACTTGCCAT+TGG | - | chr1_3:11652323-11652342 | Msa0104140:CDS | 35.0% |
| ! | CTCTTATATATTGGACTGGA+GGG | + | chr1_3:11652390-11652409 | None:intergenic | 35.0% |
| ! | TCTCTTATATATTGGACTGG+AGG | + | chr1_3:11652391-11652410 | None:intergenic | 35.0% |
| ! | TAGCTGCTTTGTGTTTGATT+TGG | - | chr1_3:11652483-11652502 | Msa0104140:intron | 35.0% |
| !! | CTTTGTGTTTGATTTGGAGT+AGG | - | chr1_3:11652489-11652508 | Msa0104140:intron | 35.0% |
| TGATTACGCAAATAGATAGG+AGG | + | chr1_3:11652654-11652673 | None:intergenic | 35.0% | |
| AACAAAGTAGAAAGCAACTG+CGG | + | chr1_3:11652842-11652861 | None:intergenic | 35.0% | |
| ATCTCACAAGTCAGTTATGT+GGG | + | chr1_3:11653538-11653557 | None:intergenic | 35.0% | |
| CATATATACTACCTGGGTTT+CGG | + | chr1_3:11653640-11653659 | None:intergenic | 35.0% | |
| ACAAAGATAAATACTCCCTC+TGG | - | chr1_3:11653679-11653698 | Msa0104140:intron | 35.0% | |
| TTGCTTATAATAGTTACCGG+AGG | - | chr1_3:11653811-11653830 | Msa0104140:intron | 35.0% | |
| TGCTTATAATAGTTACCGGA+GGG | - | chr1_3:11653812-11653831 | Msa0104140:intron | 35.0% | |
| CAATTGATATATACTCCCTC+CGG | + | chr1_3:11653830-11653849 | None:intergenic | 35.0% | |
| GTAGGATGTGCTTTCAAAAA+AGG | - | chr1_3:11653849-11653868 | Msa0104140:intron | 35.0% | |
| ! | CTCTTTTAATGAGCATGTGT+AGG | - | chr1_3:11654120-11654139 | Msa0104140:intron | 35.0% |
| ! | ATTTAGTGGATATTCACCCA+TGG | - | chr1_3:11654359-11654378 | Msa0104140:CDS | 35.0% |
| AAATGGTGGCACTTATTTGA+AGG | - | chr1_3:11654392-11654411 | Msa0104140:CDS | 35.0% | |
| AATGGTGGCACTTATTTGAA+GGG | - | chr1_3:11654393-11654412 | Msa0104140:CDS | 35.0% | |
| ! | AGACTTTTGTCTAATGTTGC+AGG | - | chr1_3:11654443-11654462 | Msa0104140:CDS | 35.0% |
| AATGTTGCAGGTCAAGTTAT+AGG | - | chr1_3:11654455-11654474 | Msa0104140:CDS | 35.0% | |
| ! | TGAATGTGTTAAGAGAGTGT+TGG | - | chr1_3:11654501-11654520 | Msa0104140:CDS | 35.0% |
| ! | TCACCAGCTTTCTTTTACTA+AGG | - | chr1_3:11654742-11654761 | Msa0104140:intron | 35.0% |
| ATTGGAAACCTAATTGGGTT+TGG | - | chr1_3:11654916-11654935 | Msa0104140:CDS | 35.0% | |
| AATTGTGACCAAACCCAATT+AGG | + | chr1_3:11654927-11654946 | None:intergenic | 35.0% | |
| GTCACAATTACTTCTTGCAT+CGG | - | chr1_3:11654938-11654957 | Msa0104140:CDS | 35.0% | |
| TTGTAACCAGATTGTGTTGA+AGG | + | chr1_3:11654967-11654986 | None:intergenic | 35.0% | |
| CTTTAATTATCCCAGCAGTT+TGG | - | chr1_3:11655216-11655235 | Msa0104140:CDS | 35.0% | |
| GAAGCAAAACATCAGGATTA+AGG | - | chr1_3:11655366-11655385 | Msa0104140:intron | 35.0% | |
| AGCAAAACATCAGGATTAAG+GGG | - | chr1_3:11655368-11655387 | Msa0104140:CDS | 35.0% | |
| TAAGCACGCTAACAAACTAA+AGG | + | chr1_3:11655504-11655523 | None:intergenic | 35.0% | |
| AAGAGAGTGAGTATTAGAGA+GGG | + | chr1_3:11655567-11655586 | None:intergenic | 35.0% | |
| TAAGAGAGTGAGTATTAGAG+AGG | + | chr1_3:11655568-11655587 | None:intergenic | 35.0% | |
| AAAATTGAACCCACACAAAG+TGG | - | chr1_3:11655619-11655638 | Msa0104140:intron | 35.0% | |
| ATGTCTGATATCAATGTGTC+TGG | - | chr1_3:11655899-11655918 | Msa0104140:intron | 35.0% | |
| TGTATCATATCAGACATCAC+TGG | + | chr1_3:11655939-11655958 | None:intergenic | 35.0% | |
| !! | ACATATATCAGAAGCACCAA+TGG | + | chr1_3:11655975-11655994 | None:intergenic | 35.0% |
| ! | ATTGGTGCTTCTGATATATG+TGG | - | chr1_3:11655974-11655993 | Msa0104140:intron | 35.0% |
| ATAGTTAGTATCAGCAGTGT+AGG | - | chr1_3:11656333-11656352 | Msa0104140:intron | 35.0% | |
| TAGTTAGTATCAGCAGTGTA+GGG | - | chr1_3:11656334-11656353 | Msa0104140:intron | 35.0% | |
| CTGTTCTTAATCTGAAGATC+AGG | + | chr1_3:11656409-11656428 | None:intergenic | 35.0% | |
| AAAGTTTAGTGGCCAACAAA+TGG | + | chr1_3:11656471-11656490 | None:intergenic | 35.0% | |
| ! | CAACATCTTCTTTTCTGCAT+CGG | + | chr1_3:11656608-11656627 | None:intergenic | 35.0% |
| AAAGAAGATGTTGCTGTCTA+AGG | - | chr1_3:11656615-11656634 | Msa0104140:intron | 35.0% | |
| AGGAAACAAACCTAAATCCT+CGG | + | chr1_3:11656707-11656726 | None:intergenic | 35.0% | |
| ! | TTAGGTTTGTTTCCTCAGTA+TGG | - | chr1_3:11656712-11656731 | Msa0104140:intron | 35.0% |
| TCTGTTAGGTGTTCTTTCAT+GGG | - | chr1_3:11656746-11656765 | Msa0104140:intron | 35.0% | |
| !! | TTGAGTGACTTTAGAATGCA+AGG | + | chr1_3:11656789-11656808 | None:intergenic | 35.0% |
| GCAGTGTAAATTCAAATGCT+TGG | + | chr1_3:11656938-11656957 | None:intergenic | 35.0% | |
| ACCTATGTACAAGACATTCT+GGG | + | chr1_3:11657029-11657048 | None:intergenic | 35.0% | |
| TACCTATGTACAAGACATTC+TGG | + | chr1_3:11657030-11657049 | None:intergenic | 35.0% | |
| !! | TGATTGGGAGTACTTTAATC+AGG | + | chr1_3:11657158-11657177 | None:intergenic | 35.0% |
| ATGTGTAGTTTCAGGAACTA+TGG | + | chr1_3:11657327-11657346 | None:intergenic | 35.0% | |
| TGATCATGAGGAATATTCAC+AGG | + | chr1_3:11657368-11657387 | None:intergenic | 35.0% | |
| !! | AATGCACTTATTTCTGAGGT+AGG | - | chr1_3:11657410-11657429 | Msa0104140:five_prime_UTR | 35.0% |
| TATATAAACAGAGACGAAGC+TGG | - | chr1_3:11657462-11657481 | Msa0104140:five_prime_UTR | 35.0% | |
| TCACGTTTCTCATTACTGTT+TGG | + | chr1_3:11657509-11657528 | None:intergenic | 35.0% | |
| AAACAGTAATGAGAAACGTG+AGG | - | chr1_3:11657508-11657527 | Msa0104140:five_prime_UTR | 35.0% | |
| AAGTAATTGTCCAAGCAGTA+AGG | + | chr1_3:11657541-11657560 | None:intergenic | 35.0% | |
| TAGATGAGATGAAACAGGAT+GGG | + | chr1_3:11657574-11657593 | None:intergenic | 35.0% | |
| TTAGATGAGATGAAACAGGA+TGG | + | chr1_3:11657575-11657594 | None:intergenic | 35.0% | |
| CTACTTAGATGAGATGAAAC+AGG | + | chr1_3:11657579-11657598 | None:intergenic | 35.0% | |
| GCTACAGTAAAATGCTATAC+GGG | + | chr1_3:11657636-11657655 | None:intergenic | 35.0% | |
| ! | GTATAGCATTTTACTGTAGC+TGG | - | chr1_3:11657636-11657655 | Msa0104140:five_prime_UTR | 35.0% |
| ! | TGATGATGTGTTCAGGTGTT+TGG | + | chr1_3:11647686-11647705 | None:intergenic | 40.0% |
| !!! | AAACGTTTTTGGTTTGGTGG+TGG | + | chr1_3:11647709-11647728 | None:intergenic | 40.0% |
| !! | ATAATTTGGCTCTCTCTCTC+TGG | + | chr1_3:11647736-11647755 | None:intergenic | 40.0% |
| ! | TTCTCTCTCTTCTTGGTTTG+GGG | + | chr1_3:11647822-11647841 | None:intergenic | 40.0% |
| TGCAGATTTCTCTCTCTTCT+TGG | + | chr1_3:11647829-11647848 | None:intergenic | 40.0% | |
| !!! | GATTGTGTTTTGGTATGAGG+AGG | - | chr1_3:11648369-11648388 | Msa0104140:intron | 40.0% |
| GTATGAGGAGGGTTAATTGA+GGG | - | chr1_3:11648381-11648400 | Msa0104140:intron | 40.0% | |
| GAGATGCTGTTAAATCTCGA+GGG | + | chr1_3:11648713-11648732 | None:intergenic | 40.0% | |
| TGAGATGCTGTTAAATCTCG+AGG | + | chr1_3:11648714-11648733 | None:intergenic | 40.0% | |
| TTAACAGCATCTCAAGATGG+AGG | - | chr1_3:11648720-11648739 | Msa0104140:intron | 40.0% | |
| CTAGTCTAGACTGAAACTCT+AGG | + | chr1_3:11648758-11648777 | None:intergenic | 40.0% | |
| GAACATGGAGAGTAACAATC+TGG | - | chr1_3:11648777-11648796 | Msa0104140:intron | 40.0% | |
| ! | ATAAAACTTGGAGGCTTTGG+AGG | - | chr1_3:11648804-11648823 | Msa0104140:intron | 40.0% |
| !! | TAAAACTTGGAGGCTTTGGA+GGG | - | chr1_3:11648805-11648824 | Msa0104140:intron | 40.0% |
| TTGTTGTCACACAAGAACCA+TGG | + | chr1_3:11649041-11649060 | None:intergenic | 40.0% | |
| TTCTGTTGTTGGAAGGAACT+AGG | - | chr1_3:11649164-11649183 | Msa0104140:intron | 40.0% | |
| AACTAGCAACAATATGGCCT+AGG | + | chr1_3:11649190-11649209 | None:intergenic | 40.0% | |
| TCGTGCAACTAGCAACAATA+TGG | + | chr1_3:11649196-11649215 | None:intergenic | 40.0% | |
| ATATTGTTGCTAGTTGCACG+AGG | - | chr1_3:11649195-11649214 | Msa0104140:intron | 40.0% | |
| TCGTGGTTAGCAGAAAATAG+CGG | - | chr1_3:11649308-11649327 | Msa0104140:intron | 40.0% | |
| TTGTCAAATAGTGGCTAGAG+TGG | + | chr1_3:11649373-11649392 | None:intergenic | 40.0% | |
| AATTATTTGGGTCTTGCAGC+TGG | - | chr1_3:11649707-11649726 | Msa0104140:intron | 40.0% | |
| GTAAAAAGAAAGCCGAAGAG+CGG | - | chr1_3:11649739-11649758 | Msa0104140:intron | 40.0% | |
| TAAAAAGAAAGCCGAAGAGC+GGG | - | chr1_3:11649740-11649759 | Msa0104140:intron | 40.0% | |
| ! | CGAACATTTTCAACTTGCAC+AGG | + | chr1_3:11649828-11649847 | None:intergenic | 40.0% |
| AGTAATCAAGGGTCTTTAGC+TGG | - | chr1_3:11649948-11649967 | Msa0104140:intron | 40.0% | |
| ATATCTGAATGTTCCTCCAC+CGG | + | chr1_3:11650020-11650039 | None:intergenic | 40.0% | |
| ATATATGGAATTCACACCGG+TGG | - | chr1_3:11650125-11650144 | Msa0104140:CDS | 40.0% | |
| !! | TGGTGGTTTGTTGTTCCATA+CGG | + | chr1_3:11650164-11650183 | None:intergenic | 40.0% |
| !! | AGCGTAGAAAAGTACTTTGG+TGG | + | chr1_3:11650181-11650200 | None:intergenic | 40.0% |
| !! | GAGAGCGTAGAAAAGTACTT+TGG | + | chr1_3:11650184-11650203 | None:intergenic | 40.0% |
| ! | AGTACTTTTCTACGCTCTCA+AGG | - | chr1_3:11650185-11650204 | Msa0104140:intron | 40.0% |
| !! | GAAAGCACTAAGTCATTGTC+AGG | + | chr1_3:11650494-11650513 | None:intergenic | 40.0% |
| ! | AGTGATTTGCCTAGTCTTCA+TGG | - | chr1_3:11650601-11650620 | Msa0104140:intron | 40.0% |
| ATAGTTGCACCATGAAGACT+AGG | + | chr1_3:11650613-11650632 | None:intergenic | 40.0% | |
| ATGTTGCTAGACCTTCTATG+GGG | - | chr1_3:11650752-11650771 | Msa0104140:intron | 40.0% | |
| TAAAATGGAGACCCCATAGA+AGG | + | chr1_3:11650766-11650785 | None:intergenic | 40.0% | |
| !! | ACAGTTTTAGTGTCTTCAGG+TGG | + | chr1_3:11650871-11650890 | None:intergenic | 40.0% |
| ACCTGAAGACACTAAAACTG+TGG | - | chr1_3:11650870-11650889 | Msa0104140:intron | 40.0% | |
| CCTGAAGACACTAAAACTGT+GGG | - | chr1_3:11650871-11650890 | Msa0104140:intron | 40.0% | |
| AAGTGCTAAGGAAAATGGCA+TGG | - | chr1_3:11650954-11650973 | Msa0104140:intron | 40.0% | |
| GTTTCCACTAGTTATGGTCA+AGG | - | chr1_3:11651039-11651058 | Msa0104140:CDS | 40.0% | |
| AATGCCTTGACCATAACTAG+TGG | + | chr1_3:11651046-11651065 | None:intergenic | 40.0% | |
| CATATTCGTTTGCCAGTTTG+AGG | - | chr1_3:11651373-11651392 | Msa0104140:intron | 40.0% | |
| CAATATTCTGGTCCTCAAAC+TGG | + | chr1_3:11651388-11651407 | None:intergenic | 40.0% | |
| CAGTTTGAGGACCAGAATAT+TGG | - | chr1_3:11651386-11651405 | Msa0104140:intron | 40.0% | |
| TCCATACGTCAACTATTCAG+GGG | - | chr1_3:11651454-11651473 | Msa0104140:intron | 40.0% | |
| ACTATTCAGGGGAATCTCTA+TGG | - | chr1_3:11651465-11651484 | Msa0104140:intron | 40.0% | |
| !! | TTACACAAGAGGCTGTTTCT+AGG | + | chr1_3:11651600-11651619 | None:intergenic | 40.0% |
| GAGTAGGATAGTTGTCTGTA+AGG | - | chr1_3:11652505-11652524 | Msa0104140:intron | 40.0% | |
| TGTCTGTAAGGATACAAGCT+TGG | - | chr1_3:11652517-11652536 | Msa0104140:intron | 40.0% | |
| !!! | ATTTTGGTTTCTGCGCAGTA+TGG | - | chr1_3:11652673-11652692 | Msa0104140:intron | 40.0% |
| TTGTCAACAGTCAATGCTGT+AGG | + | chr1_3:11652781-11652800 | None:intergenic | 40.0% | |
| ATCTGACTCTTCACATCAAC+AGG | - | chr1_3:11652893-11652912 | Msa0104140:intron | 40.0% | |
| TTATTGGCATCCGAAGTCAT+TGG | - | chr1_3:11652990-11653009 | Msa0104140:intron | 40.0% | |
| ! | GAGAAGGTAGGGATTTTTCT+TGG | - | chr1_3:11653020-11653039 | Msa0104140:intron | 40.0% |
| TCTCACAAGTCAGTTATGTG+GGG | + | chr1_3:11653537-11653556 | None:intergenic | 40.0% | |
| CATCTCACAAGTCAGTTATG+TGG | + | chr1_3:11653539-11653558 | None:intergenic | 40.0% | |
| !! | CATAACTGACTTGTGAGATG+AGG | - | chr1_3:11653539-11653558 | Msa0104140:intron | 40.0% |
| ! | AGGCCATCTCTTATTTGATG+TGG | - | chr1_3:11653589-11653608 | Msa0104140:intron | 40.0% |
| ! | GGCCATCTCTTATTTGATGT+GGG | - | chr1_3:11653590-11653609 | Msa0104140:intron | 40.0% |
| GTCCCACATCAAATAAGAGA+TGG | + | chr1_3:11653595-11653614 | None:intergenic | 40.0% | |
| ATATGCAATGAGCTCCAACT+TGG | - | chr1_3:11653897-11653916 | Msa0104140:intron | 40.0% | |
| GAGATGTGATTCATCCAAGT+TGG | + | chr1_3:11653914-11653933 | None:intergenic | 40.0% | |
| !! | TAAGTTTTTGGGCTGAAGCA+TGG | + | chr1_3:11653956-11653975 | None:intergenic | 40.0% |
| TGCTTCAGCCCAAAAACTTA+AGG | - | chr1_3:11653956-11653975 | Msa0104140:intron | 40.0% | |
| ACATCACTCTATATCACGGA+TGG | + | chr1_3:11654057-11654076 | None:intergenic | 40.0% | |
| CAAATAAGTGCCACCATTTC+TGG | + | chr1_3:11654391-11654410 | None:intergenic | 40.0% | |
| ! | GTTGGACGAACATTTTCGTA+TGG | - | chr1_3:11654519-11654538 | Msa0104140:CDS | 40.0% |
| TCTCTTCATTTCCTTCCATC+TGG | - | chr1_3:11655044-11655063 | Msa0104140:CDS | 40.0% | |
| !! | TATGAGAAGTACCAGATGGA+AGG | + | chr1_3:11655058-11655077 | None:intergenic | 40.0% |
| !! | CAGTTATGAGAAGTACCAGA+TGG | + | chr1_3:11655062-11655081 | None:intergenic | 40.0% |
| CAATGGTTGACTGCAAATCA+CGG | + | chr1_3:11655166-11655185 | None:intergenic | 40.0% | |
| ACCATTGATGCTCTTCAAGA+AGG | - | chr1_3:11655179-11655198 | Msa0104140:CDS | 40.0% | |
| !! | ACCTTCTTGAAGAGCATCAA+TGG | + | chr1_3:11655183-11655202 | None:intergenic | 40.0% |
| CTATGAAAACCCAAACTGCT+GGG | + | chr1_3:11655229-11655248 | None:intergenic | 40.0% | |
| TCTATGAAAACCCAAACTGC+TGG | + | chr1_3:11655230-11655249 | None:intergenic | 40.0% | |
| TTTCTCTTGGCATTCCAATG+TGG | - | chr1_3:11655289-11655308 | Msa0104140:CDS | 40.0% | |
| ! | ATTCCAATGTGGACTGATGA+TGG | - | chr1_3:11655300-11655319 | Msa0104140:CDS | 40.0% |
| !! | AATGTGGACTGATGATGGTA+GGG | - | chr1_3:11655305-11655324 | Msa0104140:CDS | 40.0% |
| GCAAAACATCAGGATTAAGG+GGG | - | chr1_3:11655369-11655388 | Msa0104140:CDS | 40.0% | |
| CAAAACATCAGGATTAAGGG+GGG | - | chr1_3:11655370-11655389 | Msa0104140:CDS | 40.0% | |
| ! | TAACGGTGCTTTTATGATGG+CGG | - | chr1_3:11655745-11655764 | Msa0104140:intron | 40.0% |
| TGAGTCAGCTACAGTTATGT+GGG | + | chr1_3:11656314-11656333 | None:intergenic | 40.0% | |
| ATGAGTCAGCTACAGTTATG+TGG | + | chr1_3:11656315-11656334 | None:intergenic | 40.0% | |
| GGTAAACCTCACAATAGTGT+AGG | - | chr1_3:11656355-11656374 | Msa0104140:intron | 40.0% | |
| GCTTAACCTACACTATTGTG+AGG | + | chr1_3:11656364-11656383 | None:intergenic | 40.0% | |
| AATGCTAGCTAGCCATTTGT+TGG | - | chr1_3:11656456-11656475 | Msa0104140:intron | 40.0% | |
| TCTACATCTACCGAGGATTT+AGG | - | chr1_3:11656694-11656713 | Msa0104140:intron | 40.0% | |
| GTCTGTTAGGTGTTCTTTCA+TGG | - | chr1_3:11656745-11656764 | Msa0104140:intron | 40.0% | |
| AAGTCACTCAAGCATGATTC+TGG | - | chr1_3:11656798-11656817 | Msa0104140:intron | 40.0% | |
| AGTCACTCAAGCATGATTCT+GGG | - | chr1_3:11656799-11656818 | Msa0104140:intron | 40.0% | |
| ACCCAGAATGTCTTGTACAT+AGG | - | chr1_3:11657025-11657044 | Msa0104140:intron | 40.0% | |
| ! | TATTTGCCGGTTATGAATGC+TGG | + | chr1_3:11657132-11657151 | None:intergenic | 40.0% |
| ATCACTCTCATCTGATCATG+AGG | + | chr1_3:11657380-11657399 | None:intergenic | 40.0% | |
| !! | CTTATTTCTGAGGTAGGAGT+TGG | - | chr1_3:11657416-11657435 | Msa0104140:five_prime_UTR | 40.0% |
| ! | CATTTTACTGTAGCTGGCAT+TGG | - | chr1_3:11657642-11657661 | Msa0104140:five_prime_UTR | 40.0% |
| CTCAGATGATTCAAATGCCA+AGG | + | chr1_3:11657689-11657708 | None:intergenic | 40.0% | |
| TCTCTCTCGATCGATCAGAT+CGG | - | chr1_3:11647859-11647878 | Msa0104140:intron | 45.0% | |
| !! | GATCCTCCGCTTTTCTCAAA+TGG | - | chr1_3:11648069-11648088 | Msa0104140:intron | 45.0% |
| ATCTGGAAGCTGGAAAACGT+CGG | - | chr1_3:11648119-11648138 | Msa0104140:intron | 45.0% | |
| GGTATGAGGAGGGTTAATTG+AGG | - | chr1_3:11648380-11648399 | Msa0104140:intron | 45.0% | |
| GCTATAGCACTGTTGCAAAG+CGG | + | chr1_3:11648507-11648526 | None:intergenic | 45.0% | |
| GCTTTGCAACAGTGCTATAG+CGG | - | chr1_3:11648506-11648525 | Msa0104140:intron | 45.0% | |
| AGAGACTAATCCCTCGAGTT+AGG | - | chr1_3:11648660-11648679 | Msa0104140:CDS | 45.0% | |
| ACTAATCCCTCGAGTTAGGT+GGG | - | chr1_3:11648664-11648683 | Msa0104140:CDS | 45.0% | |
| GAAACCAGTGTTGTCAATCG+TGG | - | chr1_3:11649291-11649310 | Msa0104140:intron | 45.0% | |
| CTAACCACGATTGACAACAC+TGG | + | chr1_3:11649298-11649317 | None:intergenic | 45.0% | |
| CGGTTTGTCAAAATTCCGCT+AGG | - | chr1_3:11649419-11649438 | Msa0104140:intron | 45.0% | |
| ATACTAGCGCTATAGCCTAG+CGG | + | chr1_3:11649437-11649456 | None:intergenic | 45.0% | |
| ! | TTGGCTTCCCTGTTCAGTTT+TGG | - | chr1_3:11649535-11649554 | Msa0104140:intron | 45.0% |
| !!! | AGGCTGTTTCTGATTTTGGC+TGG | + | chr1_3:11649808-11649827 | None:intergenic | 45.0% |
| !!! | GCACAGGCTGTTTCTGATTT+TGG | + | chr1_3:11649812-11649831 | None:intergenic | 45.0% |
| GATGGAGTTACCACATCTGA+TGG | - | chr1_3:11649861-11649880 | Msa0104140:intron | 45.0% | |
| GTTACCACATCTGATGGCAT+TGG | - | chr1_3:11649867-11649886 | Msa0104140:intron | 45.0% | |
| TCCAGCCTTCATGGAATGAA+TGG | - | chr1_3:11650239-11650258 | Msa0104140:intron | 45.0% | |
| TCCATTCATTCCATGAAGGC+TGG | + | chr1_3:11650243-11650262 | None:intergenic | 45.0% | |
| GGCTTCCATTCATTCCATGA+AGG | + | chr1_3:11650247-11650266 | None:intergenic | 45.0% | |
| GCCGACAAATTCTAGCACTT+TGG | - | chr1_3:11650382-11650401 | Msa0104140:intron | 45.0% | |
| ! | TTGGATAGTGGCTCTTCACA+TGG | - | chr1_3:11650401-11650420 | Msa0104140:intron | 45.0% |
| TAGTGGCTCTTCACATGGTT+CGG | - | chr1_3:11650406-11650425 | Msa0104140:intron | 45.0% | |
| !! | TCTTCACATGGTTCGGTTTC+TGG | - | chr1_3:11650413-11650432 | Msa0104140:intron | 45.0% |
| !! | AACTTAGAGGCATCTTGCTC+AGG | + | chr1_3:11650793-11650812 | None:intergenic | 45.0% |
| TCAAGCAGCAATGACACATC+AGG | - | chr1_3:11650826-11650845 | Msa0104140:intron | 45.0% | |
| CAAGCAGCAATGACACATCA+GGG | - | chr1_3:11650827-11650846 | Msa0104140:intron | 45.0% | |
| TAGTGTCTTCAGGTGGCTTA+TGG | + | chr1_3:11650864-11650883 | None:intergenic | 45.0% | |
| !! | CCCACAGTTTTAGTGTCTTC+AGG | + | chr1_3:11650874-11650893 | None:intergenic | 45.0% |
| CACACCGATGATAAGTGCTA+AGG | - | chr1_3:11650942-11650961 | Msa0104140:intron | 45.0% | |
| CAGGTGGTTTCCACTAGTTA+TGG | - | chr1_3:11651033-11651052 | Msa0104140:CDS | 45.0% | |
| TCCCCTGAATAGTTGACGTA+TGG | + | chr1_3:11651458-11651477 | None:intergenic | 45.0% | |
| ACAACTTTACCGTTGCACCA+AGG | + | chr1_3:11651545-11651564 | None:intergenic | 45.0% | |
| GCACGATACACCAAAATGGT+GGG | - | chr1_3:11651638-11651657 | Msa0104140:intron | 45.0% | |
| !! | AAAATGGTGGGACCTTTTCC+CGG | - | chr1_3:11651650-11651669 | Msa0104140:intron | 45.0% |
| ! | TCACAATTTTCAATGGGGGG+AGG | - | chr1_3:11651934-11651953 | Msa0104140:intron | 45.0% |
| TCGTCAATACCAATGGCAAG+TGG | + | chr1_3:11652335-11652354 | None:intergenic | 45.0% | |
| GCAAGAGATCAAAGCACAAC+TGG | - | chr1_3:11652616-11652635 | Msa0104140:intron | 45.0% | |
| ! | TTCACATCAACAGGTTGAGC+TGG | - | chr1_3:11652902-11652921 | Msa0104140:intron | 45.0% |
| TGATGAGCGTGCCAAGTTAT+TGG | - | chr1_3:11652974-11652993 | Msa0104140:intron | 45.0% | |
| GACTTCGGATGCCAATAACT+TGG | + | chr1_3:11652988-11653007 | None:intergenic | 45.0% | |
| !! | ATCCGAAGTCATTGGCTTAG+AGG | - | chr1_3:11652998-11653017 | Msa0104140:intron | 45.0% |
| CTCCTCTAAGCCAATGACTT+CGG | + | chr1_3:11653003-11653022 | None:intergenic | 45.0% | |
| !! | AGTCATTGGCTTAGAGGAGA+AGG | - | chr1_3:11653004-11653023 | Msa0104140:intron | 45.0% |
| ! | ATTGGCTTAGAGGAGAAGGT+AGG | - | chr1_3:11653008-11653027 | Msa0104140:intron | 45.0% |
| TTGGCTTAGAGGAGAAGGTA+GGG | - | chr1_3:11653009-11653028 | Msa0104140:intron | 45.0% | |
| CAGTTATGTGGGGTTGTGTT+AGG | + | chr1_3:11653527-11653546 | None:intergenic | 45.0% | |
| ! | AGCATGGACATTGCATTGGT+CGG | + | chr1_3:11653940-11653959 | None:intergenic | 45.0% |
| CTGAAGCATGGACATTGCAT+TGG | + | chr1_3:11653944-11653963 | None:intergenic | 45.0% | |
| CTCTATATCACGGATGGAAG+TGG | + | chr1_3:11654051-11654070 | None:intergenic | 45.0% | |
| GTGACACTTGTGTCTGTGTT+TGG | + | chr1_3:11654101-11654120 | None:intergenic | 45.0% | |
| GTTAAAGCTTGAGAAGCAGC+TGG | - | chr1_3:11654255-11654274 | Msa0104140:intron | 45.0% | |
| !! | CCATTTCTGGCAGAAACCAT+GGG | + | chr1_3:11654378-11654397 | None:intergenic | 45.0% |
| !! | ACCATTTCTGGCAGAAACCA+TGG | + | chr1_3:11654379-11654398 | None:intergenic | 45.0% |
| ATGGTTTCTGCCAGAAATGG+TGG | - | chr1_3:11654378-11654397 | Msa0104140:CDS | 45.0% | |
| ACCGAGTGCAAATCAGAGTT+AGG | - | chr1_3:11654602-11654621 | Msa0104140:CDS | 45.0% | |
| ! | CCCTAACTCTGATTTGCACT+CGG | + | chr1_3:11654606-11654625 | None:intergenic | 45.0% |
| CCGAGTGCAAATCAGAGTTA+GGG | - | chr1_3:11654603-11654622 | Msa0104140:CDS | 45.0% | |
| !! | AATCACGGCGGTCTTTTTCA+AGG | + | chr1_3:11655151-11655170 | None:intergenic | 45.0% |
| CTACCATCATCAGTCCACAT+TGG | + | chr1_3:11655306-11655325 | None:intergenic | 45.0% | |
| !! | CAATGTGGACTGATGATGGT+AGG | - | chr1_3:11655304-11655323 | Msa0104140:CDS | 45.0% |
| ATTGAACCCACACAAAGTGG+TGG | - | chr1_3:11655622-11655641 | Msa0104140:intron | 45.0% | |
| TTGAACCCACACAAAGTGGT+GGG | - | chr1_3:11655623-11655642 | Msa0104140:intron | 45.0% | |
| TATGTCCCACCACTTTGTGT+GGG | + | chr1_3:11655631-11655650 | None:intergenic | 45.0% | |
| GTTCTGCGACACATTGTTGT+AGG | - | chr1_3:11655815-11655834 | Msa0104140:intron | 45.0% | |
| ACATTCAGGACCTACACCAT+TGG | - | chr1_3:11655956-11655975 | Msa0104140:intron | 45.0% | |
| !! | ATCAGAAGCACCAATGGTGT+AGG | + | chr1_3:11655969-11655988 | None:intergenic | 45.0% |
| GTGCAAGCTCTCAGTTAGTT+AGG | - | chr1_3:11656250-11656269 | Msa0104140:intron | 45.0% | |
| TAGGCTGTGCTTTGCAATTG+TGG | - | chr1_3:11656269-11656288 | Msa0104140:intron | 45.0% | |
| AGCTACAGTTATGTGGGTGT+GGG | + | chr1_3:11656308-11656327 | None:intergenic | 45.0% | |
| ! | GTTGCTGTCTAAGGTACGAA+AGG | - | chr1_3:11656624-11656643 | Msa0104140:intron | 45.0% |
| ! | TCTAAGGTACGAAAGGCTTC+AGG | - | chr1_3:11656631-11656650 | Msa0104140:intron | 45.0% |
| GTACGAAAGGCTTCAGGATT+CGG | - | chr1_3:11656637-11656656 | Msa0104140:intron | 45.0% | |
| GTCACTCAAGCATGATTCTG+GGG | - | chr1_3:11656800-11656819 | Msa0104140:intron | 45.0% | |
| CACTGCAGTGTACCTAGTTT+AGG | - | chr1_3:11656952-11656971 | Msa0104140:intron | 45.0% | |
| TGTACAAGACATTCTGGGTC+TGG | + | chr1_3:11657024-11657043 | None:intergenic | 45.0% | |
| ! | TCTGTGTTGGAGTTTGAAGC+AGG | + | chr1_3:11657257-11657276 | None:intergenic | 45.0% |
| AAACAGAGACGAAGCTGGAT+TGG | - | chr1_3:11657467-11657486 | Msa0104140:five_prime_UTR | 45.0% | |
| !!! | TATTTTTAATGTTTTTTTTA+GGG | + | chr1_3:11653437-11653456 | None:intergenic | 5.0% |
| !!! | ATATTTTTAATGTTTTTTTT+AGG | + | chr1_3:11653438-11653457 | None:intergenic | 5.0% |
| !! | TAAATAATCAAAATATTTAA+CGG | - | chr1_3:11655728-11655747 | Msa0104140:intron | 5.0% |
| !!! | AAGTATTTTAATAAAATAAA+CGG | + | chr1_3:11655848-11655867 | None:intergenic | 5.0% |
| ! | GTGGTGGTGATGATGTGTTC+AGG | + | chr1_3:11647693-11647712 | None:intergenic | 50.0% |
| CGGATTCGTTGCAACGTGAA+TGG | - | chr1_3:11647996-11648015 | Msa0104140:CDS | 50.0% | |
| ACGCCATTTGAGAAAAGCGG+AGG | + | chr1_3:11648075-11648094 | None:intergenic | 50.0% | |
| CCGACGCCATTTGAGAAAAG+CGG | + | chr1_3:11648078-11648097 | None:intergenic | 50.0% | |
| !! | CCGCTTTTCTCAAATGGCGT+CGG | - | chr1_3:11648075-11648094 | Msa0104140:intron | 50.0% |
| !! | AAGCAAGAGCATCTGGAAGC+TGG | - | chr1_3:11648109-11648128 | Msa0104140:intron | 50.0% |
| TCTGGAAGCTGGAAAACGTC+GGG | - | chr1_3:11648120-11648139 | Msa0104140:intron | 50.0% | |
| TGAGGAGGGTTAATTGAGGG+AGG | - | chr1_3:11648384-11648403 | Msa0104140:intron | 50.0% | |
| GAGGGTTAATTGAGGGAGGT+AGG | - | chr1_3:11648388-11648407 | Msa0104140:intron | 50.0% | |
| GCTATCGCGCTATTGCATAG+CGG | + | chr1_3:11648593-11648612 | None:intergenic | 50.0% | |
| CAGTTGCACGCAAAGGATAC+CGG | + | chr1_3:11648639-11648658 | None:intergenic | 50.0% | |
| GTCTCTACAGTTGCACGCAA+AGG | + | chr1_3:11648646-11648665 | None:intergenic | 50.0% | |
| GACTAATCCCTCGAGTTAGG+TGG | - | chr1_3:11648663-11648682 | Msa0104140:CDS | 50.0% | |
| ! | GAGAGTTTTGCCACCCATTG+CGG | + | chr1_3:11648691-11648710 | None:intergenic | 50.0% |
| TGTTGGAAGGAACTAGGCCT+AGG | - | chr1_3:11649170-11649189 | Msa0104140:intron | 50.0% | |
| TATTTGGGTCTTGCAGCTGG+AGG | - | chr1_3:11649710-11649729 | Msa0104140:intron | 50.0% | |
| GCCAAGAAGACTGCATCATC+TGG | - | chr1_3:11649762-11649781 | Msa0104140:intron | 50.0% | |
| GCCAGATGATGCAGTCTTCT+TGG | + | chr1_3:11649766-11649785 | None:intergenic | 50.0% | |
| ! | ACCACATCTGATGGCATTGG+CGG | - | chr1_3:11649870-11649889 | Msa0104140:intron | 50.0% |
| TACATCTACCACTAGTCCGG+TGG | - | chr1_3:11650001-11650020 | Msa0104140:intron | 50.0% | |
| !! | GGTGTTGGTGGATTTCCGTA+TGG | - | chr1_3:11650146-11650165 | Msa0104140:CDS | 50.0% |
| ACTAGTCAGTCCAGCCTTCA+TGG | - | chr1_3:11650230-11650249 | Msa0104140:intron | 50.0% | |
| !! | TCACATGGTTCGGTTTCTGG+AGG | - | chr1_3:11650416-11650435 | Msa0104140:intron | 50.0% |
| GCAATATTAAGGGGGAGCCT+TGG | - | chr1_3:11651525-11651544 | Msa0104140:intron | 50.0% | |
| GTTGTTGTCGCGTGACTGAA+AGG | - | chr1_3:11651560-11651579 | Msa0104140:intron | 50.0% | |
| CTGCGCACGATACACCAAAA+TGG | - | chr1_3:11651634-11651653 | Msa0104140:intron | 50.0% | |
| CGCACGATACACCAAAATGG+TGG | - | chr1_3:11651637-11651656 | Msa0104140:intron | 50.0% | |
| ! | GGGAAAAGGTCCCACCATTT+TGG | + | chr1_3:11651651-11651670 | None:intergenic | 50.0% |
| TTCTTTGCAACGCGCTCTTG+AGG | - | chr1_3:11652138-11652157 | Msa0104140:intron | 50.0% | |
| ! | ACATCAACAGGTTGAGCTGG+AGG | - | chr1_3:11652905-11652924 | Msa0104140:intron | 50.0% |
| AACCTCTTCATCCGAAACCC+AGG | - | chr1_3:11653626-11653645 | Msa0104140:intron | 50.0% | |
| TACCTGGGTTTCGGATGAAG+AGG | + | chr1_3:11653631-11653650 | None:intergenic | 50.0% | |
| ! | TGGACATTGCATTGGTCGGA+TGG | + | chr1_3:11653936-11653955 | None:intergenic | 50.0% |
| CCCATGGTTTCTGCCAGAAA+TGG | - | chr1_3:11654375-11654394 | Msa0104140:CDS | 50.0% | |
| CGGTGTCCTTCAACACAATC+TGG | - | chr1_3:11654958-11654977 | Msa0104140:CDS | 50.0% | |
| TGGTTGACTGCAAATCACGG+CGG | + | chr1_3:11655163-11655182 | None:intergenic | 50.0% | |
| !! | GGGGGGTTGTTAACTTGCAA+TGG | - | chr1_3:11655387-11655406 | Msa0104140:CDS | 50.0% |
| GTATGTCCCACCACTTTGTG+TGG | + | chr1_3:11655632-11655651 | None:intergenic | 50.0% | |
| TCTAGCACTCACTCTCTTCC+TGG | + | chr1_3:11655666-11655685 | None:intergenic | 50.0% | |
| CAGCTACAGTTATGTGGGTG+TGG | + | chr1_3:11656309-11656328 | None:intergenic | 50.0% | |
| ! | AGATGGCTCTACATCTACCG+AGG | - | chr1_3:11656687-11656706 | Msa0104140:intron | 50.0% |
| !! | AGGTGTTGCTCCTTACTGCT+TGG | - | chr1_3:11657528-11657547 | Msa0104140:five_prime_UTR | 50.0% |
| !! | TTCTCAAATGGCGTCGGCTC+AGG | - | chr1_3:11648081-11648100 | Msa0104140:intron | 55.0% |
| !! | GGTGAGGAAGCAAGAGCATC+TGG | - | chr1_3:11648102-11648121 | Msa0104140:intron | 55.0% |
| GAGTTAGGTGGGACCGCAAT+GGG | - | chr1_3:11648675-11648694 | Msa0104140:CDS | 55.0% | |
| AGTCTTCTTGGCCCGCTCTT+CGG | + | chr1_3:11649754-11649773 | None:intergenic | 55.0% | |
| TCCGCCAATGCCATCAGATG+TGG | + | chr1_3:11649874-11649893 | None:intergenic | 55.0% | |
| GCGGAGCTGTTACTGACACT+GGG | - | chr1_3:11649889-11649908 | Msa0104140:intron | 55.0% | |
| ATCTACCACTAGTCCGGTGG+AGG | - | chr1_3:11650004-11650023 | Msa0104140:intron | 55.0% | |
| ! | ATGTTCCTCCACCGGACTAG+TGG | + | chr1_3:11650012-11650031 | None:intergenic | 55.0% |
| GGAATTCACACCGGTGGTGT+TGG | - | chr1_3:11650131-11650150 | Msa0104140:CDS | 55.0% | |
| ! | ATTCACACCGGTGGTGTTGG+TGG | - | chr1_3:11650134-11650153 | Msa0104140:CDS | 55.0% |
| CGGAAATCCACCAACACCAC+CGG | + | chr1_3:11650144-11650163 | None:intergenic | 55.0% | |
| GTCGCGTGACTGAAAGGTCA+CGG | - | chr1_3:11651566-11651585 | Msa0104140:intron | 55.0% | |
| TCGCGTGACTGAAAGGTCAC+GGG | - | chr1_3:11651567-11651586 | Msa0104140:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr1_3:11651677-11651696 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr1_3:11651678-11651697 | None:intergenic | 55.0% | |
| CTTCCCTCTGCCTCTGTCTT+CGG | - | chr1_3:11652865-11652884 | Msa0104140:intron | 55.0% | |
| CTACCGAAGACAGAGGCAGA+GGG | + | chr1_3:11652871-11652890 | None:intergenic | 55.0% | |
| TCTACCGAAGACAGAGGCAG+AGG | + | chr1_3:11652872-11652891 | None:intergenic | 55.0% | |
| !!! | ACGGCGGTCTTTTTCAAGGC+TGG | + | chr1_3:11655147-11655166 | None:intergenic | 55.0% |
| !! | GGACTGATGATGGTAGGGCT+AGG | - | chr1_3:11655310-11655329 | Msa0104140:CDS | 55.0% |
| TGGCGGTGTTCTGCCCATAT+TGG | - | chr1_3:11655762-11655781 | Msa0104140:intron | 55.0% | |
| !! | AAATGGCGTCGGCTCAGGTG+AGG | - | chr1_3:11648086-11648105 | Msa0104140:intron | 60.0% |
| TGCGGTCCCACCTAACTCGA+GGG | + | chr1_3:11648673-11648692 | None:intergenic | 60.0% | |
| TTGCGGTCCCACCTAACTCG+AGG | + | chr1_3:11648674-11648693 | None:intergenic | 60.0% | |
| CGAGTTAGGTGGGACCGCAA+TGG | - | chr1_3:11648674-11648693 | Msa0104140:CDS | 60.0% | |
| TTAGGTGGGACCGCAATGGG+TGG | - | chr1_3:11648678-11648697 | Msa0104140:CDS | 60.0% | |
| GGCGGAGCTGTTACTGACAC+TGG | - | chr1_3:11649888-11649907 | Msa0104140:intron | 60.0% | |
| ! | AAGGGGGAGCCTTGGTGCAA+CGG | - | chr1_3:11651533-11651552 | Msa0104140:intron | 60.0% |
| CATACGCAGGGTCCGGGAAA+AGG | + | chr1_3:11651665-11651684 | None:intergenic | 60.0% | |
| TTTCCCGGACCCTGCGTATG+CGG | - | chr1_3:11651665-11651684 | Msa0104140:intron | 60.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr1_3:11651666-11651685 | Msa0104140:intron | 65.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr1_3:11651671-11651690 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr1_3:11651672-11651691 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 11647592 | 11657723 | 11647592 | ID=Msa0104140;Name=Msa0104140 |
| chr1_3 | mRNA | 11647592 | 11657723 | 11647592 | ID=Msa0104140-mRNA-1;Parent=Msa0104140;Name=Msa0104140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=496|0.61|0.57|1|0.69|0.64|14|0|659 |
| chr1_3 | exon | 11647592 | 11647660 | 11647592 | ID=Msa0104140-mRNA-1:exon:4747;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11647888 | 11648072 | 11647888 | ID=Msa0104140-mRNA-1:exon:4746;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11648600 | 11648701 | 11648600 | ID=Msa0104140-mRNA-1:exon:4745;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11650115 | 11650182 | 11650115 | ID=Msa0104140-mRNA-1:exon:4744;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11651007 | 11651083 | 11651007 | ID=Msa0104140-mRNA-1:exon:4743;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11652290 | 11652400 | 11652290 | ID=Msa0104140-mRNA-1:exon:4742;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11652678 | 11652743 | 11652678 | ID=Msa0104140-mRNA-1:exon:4741;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11653087 | 11653206 | 11653087 | ID=Msa0104140-mRNA-1:exon:4740;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11654280 | 11654491 | 11654280 | ID=Msa0104140-mRNA-1:exon:4739;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11654501 | 11654731 | 11654501 | ID=Msa0104140-mRNA-1:exon:4738;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11654878 | 11655108 | 11654878 | ID=Msa0104140-mRNA-1:exon:4737;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11655130 | 11655357 | 11655130 | ID=Msa0104140-mRNA-1:exon:4736;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11655367 | 11655589 | 11655367 | ID=Msa0104140-mRNA-1:exon:4735;Parent=Msa0104140-mRNA-1 |
| chr1_3 | exon | 11657174 | 11657723 | 11657174 | ID=Msa0104140-mRNA-1:exon:4734;Parent=Msa0104140-mRNA-1 |
| chr1_3 | five_prime_UTR | 11657228 | 11657723 | 11657228 | ID=Msa0104140-mRNA-1:five_prime_utr;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11657174 | 11657227 | 11657174 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11655367 | 11655589 | 11655367 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11655130 | 11655357 | 11655130 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11654878 | 11655108 | 11654878 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11654501 | 11654731 | 11654501 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11654280 | 11654491 | 11654280 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11653087 | 11653206 | 11653087 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11652678 | 11652743 | 11652678 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11652290 | 11652400 | 11652290 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11651007 | 11651083 | 11651007 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11650115 | 11650182 | 11650115 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11648600 | 11648701 | 11648600 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11647888 | 11648072 | 11647888 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| chr1_3 | CDS | 11647592 | 11647660 | 11647592 | ID=Msa0104140-mRNA-1:cds;Parent=Msa0104140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
