Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306830 | sp|A0A1P8B760|AMI4G_ARATH | 61.983 | 484 | 171 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306830 | A0A396GPR5 | 97.076 | 513 | 15 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042490 | Msa1306830 | -0.815443 | 9.221100e-52 | -8.615850e-47 |
| Msa0051960 | Msa1306830 | 0.802713 | 4.924389e-49 | -8.615850e-47 |
| Msa0061220 | Msa1306830 | 0.811942 | 5.439309e-51 | -8.615850e-47 |
| Msa0078700 | Msa1306830 | 0.830528 | 2.791192e-55 | -8.615850e-47 |
| Msa0101960 | Msa1306830 | 0.809442 | 1.888148e-50 | -8.615850e-47 |
| Msa0105200 | Msa1306830 | 0.813206 | 2.877778e-51 | -8.615850e-47 |
| Msa0619310 | Msa1306830 | 0.825996 | 3.456907e-54 | -8.615850e-47 |
| Msa0631130 | Msa1306830 | 0.819789 | 9.656496e-53 | -8.615850e-47 |
| Msa0632650 | Msa1306830 | 0.800160 | 1.641568e-48 | -8.615850e-47 |
| Msa0635270 | Msa1306830 | 0.846721 | 1.818201e-59 | -8.615850e-47 |
| Msa0636210 | Msa1306830 | 0.817780 | 2.761125e-52 | -8.615850e-47 |
| Msa0641130 | Msa1306830 | 0.810254 | 1.263154e-50 | -8.615850e-47 |
| Msa0658190 | Msa1306830 | 0.809893 | 1.510663e-50 | -8.615850e-47 |
| Msa0662580 | Msa1306830 | 0.824127 | 9.552673e-54 | -8.615850e-47 |
| Msa0669350 | Msa1306830 | 0.809970 | 1.453847e-50 | -8.615850e-47 |
| Msa0677010 | Msa1306830 | 0.813010 | 3.177762e-51 | -8.615850e-47 |
| Msa0704680 | Msa1306830 | 0.826700 | 2.349274e-54 | -8.615850e-47 |
| Msa0709140 | Msa1306830 | 0.807927 | 3.978471e-50 | -8.615850e-47 |
| Msa0719900 | Msa1306830 | -0.812250 | 4.659272e-51 | -8.615850e-47 |
| Msa0744640 | Msa1306830 | 0.822074 | 2.877263e-53 | -8.615850e-47 |
| Msa0764070 | Msa1306830 | 0.800458 | 1.427770e-48 | -8.615850e-47 |
| Msa0833270 | Msa1306830 | 0.801688 | 7.999970e-49 | -8.615850e-47 |
| Msa0841730 | Msa1306830 | 0.821496 | 3.915050e-53 | -8.615850e-47 |
| Msa0139680 | Msa1306830 | 0.810510 | 1.112244e-50 | -8.615850e-47 |
| Msa0164490 | Msa1306830 | 0.827409 | 1.589327e-54 | -8.615850e-47 |
| Msa0170630 | Msa1306830 | 0.844365 | 7.908846e-59 | -8.615850e-47 |
| Msa0171330 | Msa1306830 | 0.835376 | 1.739214e-56 | -8.615850e-47 |
| Msa0217060 | Msa1306830 | 0.803880 | 2.822077e-49 | -8.615850e-47 |
| Msa1234470 | Msa1306830 | 0.803083 | 4.128245e-49 | -8.615850e-47 |
| Msa1238600 | Msa1306830 | 0.834271 | 3.301662e-56 | -8.615850e-47 |
| Msa1255210 | Msa1306830 | 0.820587 | 6.338448e-53 | -8.615850e-47 |
| Msa1256060 | Msa1306830 | 0.849230 | 3.695799e-60 | -8.615850e-47 |
| Msa1259860 | Msa1306830 | 0.800538 | 1.375061e-48 | -8.615850e-47 |
| Msa1281660 | Msa1306830 | 0.818369 | 2.031686e-52 | -8.615850e-47 |
| Msa1289050 | Msa1306830 | 0.820412 | 6.954072e-53 | -8.615850e-47 |
| Msa1289090 | Msa1306830 | 0.829189 | 5.916413e-55 | -8.615850e-47 |
| Msa1295650 | Msa1306830 | 0.813847 | 2.080245e-51 | -8.615850e-47 |
| Msa1296240 | Msa1306830 | 0.811621 | 6.387146e-51 | -8.615850e-47 |
| Msa1306830 | Msa1306960 | 0.804873 | 1.752777e-49 | -8.615850e-47 |
| Msa1306830 | Msa1307530 | 0.808445 | 3.086869e-50 | -8.615850e-47 |
| Msa1306830 | Msa1315480 | 0.854499 | 1.181897e-61 | -8.615850e-47 |
| Msa1306830 | Msa1362850 | 0.823742 | 1.175797e-53 | -8.615850e-47 |
| Msa1306830 | Msa1367790 | 0.804564 | 2.033582e-49 | -8.615850e-47 |
| Msa1306830 | Msa1389170 | 0.813543 | 2.427650e-51 | -8.615850e-47 |
| Msa1306830 | Msa1395110 | 0.804204 | 2.416252e-49 | -8.615850e-47 |
| Msa1306830 | Msa1398900 | 0.809928 | 1.484811e-50 | -8.615850e-47 |
| Msa0415100 | Msa1306830 | 0.817961 | 2.512756e-52 | -8.615850e-47 |
| Msa0442860 | Msa1306830 | 0.800264 | 1.563417e-48 | -8.615850e-47 |
| Msa1034450 | Msa1306830 | 0.822460 | 2.341237e-53 | -8.615850e-47 |
| Msa1069890 | Msa1306830 | 0.820281 | 7.453187e-53 | -8.615850e-47 |
| Msa1074200 | Msa1306830 | 0.822658 | 2.105478e-53 | -8.615850e-47 |
| Msa1086490 | Msa1306830 | -0.801220 | 9.978993e-49 | -8.615850e-47 |
| Msa1092310 | Msa1306830 | 0.841889 | 3.613212e-58 | -8.615850e-47 |
| Msa0271540 | Msa1306830 | 0.804415 | 2.184237e-49 | -8.615850e-47 |
| Msa0295420 | Msa1306830 | 0.804541 | 2.056039e-49 | -8.615850e-47 |
| Msa0307420 | Msa1306830 | 0.824923 | 6.204427e-54 | -8.615850e-47 |
| Msa0355550 | Msa1306830 | 0.841044 | 6.032335e-58 | -8.615850e-47 |
| Msa1114670 | Msa1306830 | 0.832279 | 1.034796e-55 | -8.615850e-47 |
| Msa1116840 | Msa1306830 | 0.843033 | 1.796997e-58 | -8.615850e-47 |
| Msa1119920 | Msa1306830 | 0.824933 | 6.171193e-54 | -8.615850e-47 |
| Msa1131430 | Msa1306830 | 0.812389 | 4.345800e-51 | -8.615850e-47 |
| Msa1133700 | Msa1306830 | 0.828025 | 1.130690e-54 | -8.615850e-47 |
| Msa1140630 | Msa1306830 | 0.815040 | 1.133293e-51 | -8.615850e-47 |
| Msa1157110 | Msa1306830 | 0.802046 | 6.755187e-49 | -8.615850e-47 |
| Msa1157670 | Msa1306830 | 0.837566 | 4.820145e-57 | -8.615850e-47 |
| Msa1159170 | Msa1306830 | 0.848733 | 5.076917e-60 | -8.615850e-47 |
| Msa1173800 | Msa1306830 | 0.807216 | 5.632124e-50 | -8.615850e-47 |
| Msa1175100 | Msa1306830 | 0.811689 | 6.174114e-51 | -8.615850e-47 |
| Msa1202800 | Msa1306830 | 0.812307 | 4.528112e-51 | -8.615850e-47 |
| Msa0490320 | Msa1306830 | 0.819843 | 9.389083e-53 | -8.615850e-47 |
| Msa0517270 | Msa1306830 | 0.848900 | 4.562994e-60 | -8.615850e-47 |
| Msa0534610 | Msa1306830 | 0.816406 | 5.622117e-52 | -8.615850e-47 |
| Msa0536540 | Msa1306830 | 0.800626 | 1.319585e-48 | -8.615850e-47 |
| Msa0548650 | Msa1306830 | -0.801182 | 1.015821e-48 | -8.615850e-47 |
| Msa0563860 | Msa1306830 | 0.923741 | 1.779692e-89 | -8.615850e-47 |
| Msa0567370 | Msa1306830 | 0.807486 | 4.936915e-50 | -8.615850e-47 |
| Msa0574930 | Msa1306830 | 0.802195 | 6.295950e-49 | -8.615850e-47 |
| Msa0577490 | Msa1306830 | 0.960603 | 9.599007e-119 | -8.615850e-47 |
| Msa0590810 | Msa1306830 | 0.824594 | 7.418089e-54 | -8.615850e-47 |
| Msa0592650 | Msa1306830 | 0.806159 | 9.416347e-50 | -8.615850e-47 |
| Msa0598060 | Msa1306830 | 0.812883 | 3.388264e-51 | -8.615850e-47 |
| Msa0600590 | Msa1306830 | 0.813456 | 2.536619e-51 | -8.615850e-47 |
| Msa0870510 | Msa1306830 | 0.833740 | 4.483572e-56 | -8.615850e-47 |
| Msa0905570 | Msa1306830 | 0.815530 | 8.820292e-52 | -8.615850e-47 |
| Msa0930270 | Msa1306830 | 0.831793 | 1.364814e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306830 | MtrunA17_Chr8g0377681 | 97.076 | 513 | 15 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1023 |
| Msa1306830 | MtrunA17_Chr8g0377691 | 84.932 | 511 | 76 | 1 | 3 | 513 | 6 | 515 | 0.0 | 881 |
| Msa1306830 | MtrunA17_Chr8g0377651 | 87.117 | 489 | 62 | 1 | 25 | 513 | 28 | 515 | 0.0 | 880 |
| Msa1306830 | MtrunA17_Chr8g0377641 | 84.086 | 509 | 77 | 2 | 2 | 510 | 5 | 509 | 0.0 | 878 |
| Msa1306830 | MtrunA17_Chr8g0377701 | 84.676 | 509 | 76 | 2 | 3 | 510 | 6 | 513 | 0.0 | 869 |
| Msa1306830 | MtrunA17_Chr4g0037521 | 61.111 | 486 | 179 | 7 | 28 | 506 | 25 | 507 | 0.0 | 570 |
| Msa1306830 | MtrunA17_Chr4g0037491 | 58.361 | 305 | 114 | 6 | 202 | 497 | 1 | 301 | 5.22e-115 | 342 |
| Msa1306830 | MtrunA17_Chr8g0377661 | 92.308 | 78 | 6 | 0 | 436 | 513 | 1 | 78 | 4.25e-43 | 147 |
| Msa1306830 | MtrunA17_Chr4g0037501 | 63.830 | 94 | 32 | 2 | 102 | 193 | 2 | 95 | 2.48e-30 | 113 |
| Msa1306830 | MtrunA17_Chr8g0385461 | 32.171 | 258 | 158 | 7 | 29 | 284 | 154 | 396 | 7.44e-28 | 117 |
| Msa1306830 | MtrunA17_Chr3g0097801 | 33.108 | 296 | 173 | 6 | 15 | 306 | 34 | 308 | 2.34e-26 | 112 |
| Msa1306830 | MtrunA17_Chr2g0279961 | 28.975 | 283 | 188 | 6 | 38 | 315 | 130 | 404 | 3.56e-20 | 94.0 |
| Msa1306830 | MtrunA17_Chr3g0130801 | 26.027 | 511 | 298 | 21 | 37 | 513 | 200 | 664 | 1.26e-19 | 92.4 |
| Msa1306830 | MtrunA17_Chr8g0384851 | 25.333 | 525 | 314 | 21 | 18 | 505 | 116 | 599 | 6.08e-16 | 80.9 |
| Msa1306830 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 137 | 254 | 63 | 176 | 1.84e-13 | 72.4 |
| Msa1306830 | MtrunA17_Chr4g0050371 | 37.190 | 121 | 70 | 2 | 135 | 254 | 107 | 222 | 3.73e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306830 | AT4G34880.2 | 61.983 | 484 | 171 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Msa1306830 | AT4G34880.1 | 54.865 | 483 | 161 | 5 | 27 | 506 | 34 | 462 | 5.81e-178 | 508 |
| Msa1306830 | AT5G07360.1 | 33.068 | 251 | 155 | 6 | 30 | 278 | 197 | 436 | 4.97e-27 | 115 |
| Msa1306830 | AT5G07360.3 | 33.068 | 251 | 155 | 6 | 30 | 278 | 197 | 436 | 4.97e-27 | 115 |
| Msa1306830 | AT3G25660.1 | 27.158 | 556 | 296 | 19 | 4 | 498 | 14 | 521 | 5.31e-25 | 108 |
| Msa1306830 | AT5G07360.2 | 32.669 | 251 | 149 | 7 | 30 | 278 | 197 | 429 | 7.97e-24 | 105 |
| Msa1306830 | AT5G64440.1 | 24.649 | 499 | 318 | 17 | 38 | 508 | 131 | 599 | 3.47e-20 | 94.4 |
| Msa1306830 | AT1G08980.1 | 41.176 | 119 | 64 | 3 | 137 | 254 | 64 | 177 | 2.30e-14 | 75.5 |
| Msa1306830 | AT5G09420.1 | 37.607 | 117 | 67 | 2 | 135 | 250 | 105 | 216 | 8.98e-11 | 64.7 |
Find 137 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTATACTCACCAATTT+TGG | 0.071732 | 8_4:-1788440 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 8_4:+1785992 | Msa1306830:CDS |
| CAGCCATTTGGAATTTGTTT+TGG | 0.197424 | 8_4:+1788786 | Msa1306830:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 8_4:-1785833 | None:intergenic |
| AAAGGAATCGGAAGAAATTA+AGG | 0.234594 | 8_4:-1785698 | None:intergenic |
| ATGACAAGATGGTCAGAAAA+TGG | 0.246254 | 8_4:+1788639 | Msa1306830:CDS |
| AATATCAGTAGCTGCAAATT+TGG | 0.248946 | 8_4:+1786663 | Msa1306830:CDS |
| TGCACTTCTATAGATGATTT+AGG | 0.260197 | 8_4:-1789044 | None:intergenic |
| TTGATGTTAATTGGTTTCTT+TGG | 0.276109 | 8_4:-1785824 | None:intergenic |
| TTTAGTAGCATACTTGCTAT+TGG | 0.285041 | 8_4:+1788720 | Msa1306830:CDS |
| TGAGTGAGTGGTCAAATTAC+AGG | 0.310539 | 8_4:+1786156 | Msa1306830:CDS |
| GAATCTGGTGCTATCATATT+GGG | 0.314103 | 8_4:+1786122 | Msa1306830:CDS |
| TTTCATCATGAGTTGACTAA+TGG | 0.314260 | 8_4:+1785658 | None:intergenic |
| CTAAAGAAAGACGGACTAAT+AGG | 0.316078 | 8_4:+1787378 | Msa1306830:CDS |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 8_4:-1786005 | None:intergenic |
| CAGGGATCATCCAAAGTATA+TGG | 0.328369 | 8_4:-1786619 | None:intergenic |
| GGAATCTGGTGCTATCATAT+TGG | 0.328454 | 8_4:+1786121 | Msa1306830:CDS |
| CAGGCAGAGAGGTGCAGTTT+TGG | 0.331310 | 8_4:+1788253 | Msa1306830:intron |
| TACCCGACTGTGTCTTGCCT+TGG | 0.332981 | 8_4:-1786808 | None:intergenic |
| GGCTCCATCTTATGCCCTTC+AGG | 0.344879 | 8_4:+1786715 | Msa1306830:CDS |
| AATTGAGCATAGCCACCTTC+TGG | 0.348881 | 8_4:-1787354 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.351952 | 8_4:+1785970 | Msa1306830:CDS |
| ATGCTACTAAAGGATGAAAA+AGG | 0.353386 | 8_4:-1788708 | None:intergenic |
| CAGCTTGCAACATGATATCT+TGG | 0.356824 | 8_4:-1788569 | None:intergenic |
| GTGTCTTGCCTTGGGCTGAT+TGG | 0.357682 | 8_4:-1786799 | None:intergenic |
| TGAAAACCCGCGGTACAATA+TGG | 0.358385 | 8_4:+1789097 | Msa1306830:three_prime_UTR |
| TCCAAGACACCTTTGAGAAC+TGG | 0.358911 | 8_4:-1785891 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 8_4:-1785921 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.382745 | 8_4:+1788588 | Msa1306830:CDS |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 8_4:-1787255 | None:intergenic |
| TAGATGATTTAGGATTGTTC+AGG | 0.383525 | 8_4:-1789034 | None:intergenic |
| GTTACCAAGTTAAGGGAATC+TGG | 0.384512 | 8_4:+1786107 | Msa1306830:CDS |
| TATGAAAAGGGTCAGCCATT+TGG | 0.384634 | 8_4:+1788774 | Msa1306830:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.391166 | 8_4:+1788732 | Msa1306830:CDS |
| CCTGCTGGAACAATGATTCC+AGG | 0.396619 | 8_4:-1788750 | None:intergenic |
| TACCTTTCCTTGTCCACCTC+TGG | 0.402662 | 8_4:-1786207 | None:intergenic |
| CCAAGACACCTTTGAGAACT+GGG | 0.403077 | 8_4:-1785890 | None:intergenic |
| ATGGTAGTTGATTGCGTAGC+AGG | 0.405906 | 8_4:-1785747 | None:intergenic |
| TAGGAGGAACTTGATAAGTA+TGG | 0.408411 | 8_4:+1788546 | Msa1306830:intron |
| ACCCGACTGTGTCTTGCCTT+GGG | 0.412367 | 8_4:-1786807 | None:intergenic |
| TTTGCAGAATCCATATACTT+TGG | 0.416501 | 8_4:+1786609 | Msa1306830:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 8_4:-1788828 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 8_4:+1786016 | Msa1306830:CDS |
| TGCGTAGCAGGGAAGGTAAC+TGG | 0.418344 | 8_4:-1785735 | None:intergenic |
| TGGTCAAATTACAGGTCTAA+TGG | 0.421009 | 8_4:+1786164 | Msa1306830:CDS |
| AGGTGTTGTTACCAAGTTAA+GGG | 0.431180 | 8_4:+1786100 | Msa1306830:CDS |
| CAGGTGTTGTTACCAAGTTA+AGG | 0.431264 | 8_4:+1786099 | Msa1306830:CDS |
| CCCAGTTCTCAAAGGTGTCT+TGG | 0.444958 | 8_4:+1785890 | Msa1306830:CDS |
| GTATGGTGAAGTTGTATTCA+TGG | 0.463177 | 8_4:+1789132 | Msa1306830:three_prime_UTR |
| AAGGAATCGGAAGAAATTAA+GGG | 0.463803 | 8_4:-1785697 | None:intergenic |
| AGCACCAGATTCCCTTAACT+TGG | 0.473094 | 8_4:-1786111 | None:intergenic |
| TTGCAAGCTGAAAAGACAAA+TGG | 0.474253 | 8_4:+1788582 | Msa1306830:CDS |
| TTTGAATATTGATTTGGTTG+AGG | 0.479963 | 8_4:-1785866 | None:intergenic |
| TGACAAGATGGTCAGAAAAT+GGG | 0.481903 | 8_4:+1788640 | Msa1306830:CDS |
| ACAATGATATTCACGGGAAG+TGG | 0.481922 | 8_4:-1788939 | None:intergenic |
| AGCTACACCTGAAAACGTTA+AGG | 0.482219 | 8_4:+1787469 | Msa1306830:CDS |
| GCCCAAGGCAAGACACAGTC+GGG | 0.483498 | 8_4:+1786806 | Msa1306830:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 8_4:+1785978 | Msa1306830:CDS |
| GTGATGCTACTAAGTCTTTG+AGG | 0.490355 | 8_4:-1788373 | None:intergenic |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 8_4:+1788761 | Msa1306830:CDS |
| AATAGCAAGTATGCTACTAA+AGG | 0.492751 | 8_4:-1788718 | None:intergenic |
| AGTAGCATACTTGCTATTGG+AGG | 0.497454 | 8_4:+1788723 | Msa1306830:CDS |
| TCTGACTTTCGAAGAGGAGG+TGG | 0.500340 | 8_4:-1788882 | None:intergenic |
| CCTGGAATCATTGTTCCAGC+AGG | 0.504120 | 8_4:+1788750 | Msa1306830:CDS |
| ATATTCACGGGAAGTGGAGG+GGG | 0.509394 | 8_4:-1788933 | None:intergenic |
| TTCAGGTCTTAACTCAGTGG+TGG | 0.510569 | 8_4:+1786732 | Msa1306830:CDS |
| GTAACAACACCTGCATCTCT+TGG | 0.511275 | 8_4:-1786089 | None:intergenic |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 8_4:-1788789 | None:intergenic |
| CAAAGAAACAATGATATTCA+CGG | 0.513329 | 8_4:-1788946 | None:intergenic |
| ATGTCACTAACATGGTTGAT+TGG | 0.514444 | 8_4:+1789072 | Msa1306830:three_prime_UTR |
| GGACTAATAGGAAAGAGAAT+AGG | 0.515996 | 8_4:+1787390 | Msa1306830:CDS |
| CAGCATCCATATTGTACCGC+GGG | 0.519748 | 8_4:-1789103 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 8_4:-1785975 | None:intergenic |
| TAGAGCTGATCAAGAGAGAA+GGG | 0.527368 | 8_4:+1785944 | Msa1306830:CDS |
| AAGACCTGAAGGGCATAAGA+TGG | 0.527458 | 8_4:-1786719 | None:intergenic |
| CCTCTGGCACTCCAACCACT+TGG | 0.532038 | 8_4:-1786191 | None:intergenic |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.533543 | 8_4:-1787298 | None:intergenic |
| ATGATATTCACGGGAAGTGG+AGG | 0.534855 | 8_4:-1788936 | None:intergenic |
| TATGGATGCTGCTACATGTA+TGG | 0.540308 | 8_4:+1789115 | Msa1306830:three_prime_UTR |
| ACATCTGCCAAGCTTCTCAC+TGG | 0.542835 | 8_4:-1788395 | None:intergenic |
| TTCATAGCAATATCTTCACT+TGG | 0.543028 | 8_4:-1788320 | None:intergenic |
| TCAGTGGTGCCAAGAGATGC+AGG | 0.543965 | 8_4:+1786080 | Msa1306830:CDS |
| AGCATCACCAGTGAGAAGCT+TGG | 0.549066 | 8_4:+1788388 | Msa1306830:CDS |
| GGCCACTGAATTCTCAATTG+AGG | 0.551453 | 8_4:+1785770 | Msa1306830:CDS |
| TGATATTCACGGGAAGTGGA+GGG | 0.551594 | 8_4:-1788935 | None:intergenic |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 8_4:+1786038 | Msa1306830:CDS |
| TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 8_4:+1787285 | Msa1306830:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 8_4:+1786769 | Msa1306830:CDS |
| TGCCAGAGGTGGACAAGGAA+AGG | 0.558940 | 8_4:+1786205 | Msa1306830:CDS |
| TGATCCACTACTTGATCCAC+AGG | 0.561542 | 8_4:-1786638 | None:intergenic |
| AATTGAGAATTCAGTGGCCA+TGG | 0.562344 | 8_4:-1785766 | None:intergenic |
| AGTTGATTGCGTAGCAGGGA+AGG | 0.562910 | 8_4:-1785742 | None:intergenic |
| CTAATGGAGCTCCAAGTGGT+TGG | 0.563231 | 8_4:+1786180 | Msa1306830:CDS |
| CAAACTTCTGACTTTCGAAG+AGG | 0.563453 | 8_4:-1788888 | None:intergenic |
| AAAGAAACAATGATATTCAC+GGG | 0.565624 | 8_4:-1788945 | None:intergenic |
| GATATTCACGGGAAGTGGAG+GGG | 0.568388 | 8_4:-1788934 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.570325 | 8_4:+1788762 | Msa1306830:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.570811 | 8_4:+1786144 | Msa1306830:CDS |
| AGTTCTCAAAGGTGTCTTGG+AGG | 0.575693 | 8_4:+1785893 | Msa1306830:CDS |
| TGGAGTGCCAGAGGTGGACA+AGG | 0.582665 | 8_4:+1786200 | Msa1306830:CDS |
| AACAAATAAACTTGATGCTG+TGG | 0.584496 | 8_4:+1788680 | Msa1306830:CDS |
| ACCACTGAGTTAAGACCTGA+AGG | 0.584572 | 8_4:-1786730 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 8_4:+1787369 | Msa1306830:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 8_4:+1788628 | Msa1306830:CDS |
| TCAGGTCTTAACTCAGTGGT+GGG | 0.586914 | 8_4:+1786733 | Msa1306830:CDS |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.596004 | 8_4:+1785943 | Msa1306830:CDS |
| ACTTCTGACTTTCGAAGAGG+AGG | 0.596687 | 8_4:-1788885 | None:intergenic |
| AGCCCAAGGCAAGACACAGT+CGG | 0.598710 | 8_4:+1786805 | Msa1306830:CDS |
| TGGTGCTATCATATTGGGGA+AGG | 0.599173 | 8_4:+1786127 | Msa1306830:CDS |
| AATTTGGTGACTGTGTCACT+TGG | 0.602109 | 8_4:+1786679 | Msa1306830:CDS |
| ATTTGACCACTCACTCAAAG+TGG | 0.602997 | 8_4:-1786150 | None:intergenic |
| CCCTTCAGGTCTTAACTCAG+TGG | 0.604539 | 8_4:+1786729 | Msa1306830:CDS |
| CCAAGTGGTTGGAGTGCCAG+AGG | 0.606261 | 8_4:+1786191 | Msa1306830:CDS |
| ATTCAAAACCCAGTTCTCAA+AGG | 0.608358 | 8_4:+1785882 | Msa1306830:CDS |
| TCAAAGTATATTCCAGAAGG+TGG | 0.608727 | 8_4:+1787342 | Msa1306830:CDS |
| AGTGGTTGGAGTGCCAGAGG+TGG | 0.615681 | 8_4:+1786194 | Msa1306830:CDS |
| TCTTCAACTTAATTTACTAG+CGG | 0.617446 | 8_4:-1788972 | None:intergenic |
| GCATCAAAGTATATTCCAGA+AGG | 0.627357 | 8_4:+1787339 | Msa1306830:CDS |
| TGGTAGTTGATTGCGTAGCA+GGG | 0.628397 | 8_4:-1785746 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.630288 | 8_4:+1786751 | Msa1306830:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 8_4:-1786763 | None:intergenic |
| AGGGCATAAGATGGAGCCAT+CGG | 0.636027 | 8_4:-1786710 | None:intergenic |
| TTCCTCAATTGAGAATTCAG+TGG | 0.636730 | 8_4:-1785772 | None:intergenic |
| GATCCCTGTGGATCAAGTAG+TGG | 0.645260 | 8_4:+1786634 | Msa1306830:CDS |
| GTGTAATTCCAATCAGCCCA+AGG | 0.647537 | 8_4:+1786791 | Msa1306830:CDS |
| AAATTAAGGGCAAACATGTG+CGG | 0.655310 | 8_4:-1785684 | None:intergenic |
| AATCTGGTGCTATCATATTG+GGG | 0.666419 | 8_4:+1786123 | Msa1306830:CDS |
| TGCTACGCAATCAACTACCA+TGG | 0.679600 | 8_4:+1785749 | Msa1306830:CDS |
| GATGAAATTATCAGGCAGAG+AGG | 0.691759 | 8_4:+1788242 | Msa1306830:intron |
| TATACTTTGGATGATCCCTG+TGG | 0.698609 | 8_4:+1786622 | Msa1306830:CDS |
| AGGTCTAATGGAGCTCCAAG+TGG | 0.700368 | 8_4:+1786176 | Msa1306830:CDS |
| GCATGTTGATGTCACTAACA+TGG | 0.709629 | 8_4:+1789064 | Msa1306830:three_prime_UTR |
| TTGATTGGTCTGAAAACCCG+CGG | 0.710995 | 8_4:+1789087 | Msa1306830:three_prime_UTR |
| GCAGCATCCATATTGTACCG+CGG | 0.711508 | 8_4:-1789104 | None:intergenic |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 8_4:+1786694 | Msa1306830:CDS |
| CCACTGAGTTAAGACCTGAA+GGG | 0.717424 | 8_4:-1786729 | None:intergenic |
| GATCCACTACTTGATCCACA+GGG | 0.772110 | 8_4:-1786637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAATTATTTAGTA+TGG | + | chr8_4:1786283-1786302 | Msa1306830:intron | 10.0% |
| !!! | TGACTAATTTTTTTTTAATA+AGG | - | chr8_4:1786552-1786571 | None:intergenic | 10.0% |
| !! | GATATTAATAAATATTAATC+TGG | + | chr8_4:1788492-1788511 | Msa1306830:intron | 10.0% |
| !!! | TTTTATAAATATCATTGCAA+AGG | - | chr8_4:1787716-1787735 | None:intergenic | 15.0% |
| !!! | AAATTATTTTAGTCTTTCAT+AGG | + | chr8_4:1787781-1787800 | Msa1306830:intron | 15.0% |
| !! | TAATGTAAATGTAAGTAAAT+AGG | - | chr8_4:1788190-1788209 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTATTTGTTTA+TGG | + | chr8_4:1788462-1788481 | Msa1306830:intron | 15.0% |
| !! | AATTGTTGTATAAAAATTGT+AGG | + | chr8_4:1788527-1788546 | Msa1306830:intron | 15.0% |
| !! | TCTTAGTTAATTTAGTTAAC+TGG | + | chr8_4:1786243-1786262 | Msa1306830:intron | 20.0% |
| !! | TAGACTATAAATTCTATGTT+TGG | - | chr8_4:1786432-1786451 | None:intergenic | 20.0% |
| !! | GCAAGAATATTAGAATATAT+TGG | - | chr8_4:1787155-1787174 | None:intergenic | 20.0% |
| !! | GACTAAAATAATTTCATTCA+AGG | - | chr8_4:1787775-1787794 | None:intergenic | 20.0% |
| !! | ATAACATTGATGAAATTATC+AGG | + | chr8_4:1788234-1788253 | Msa1306830:intron | 20.0% |
| !! | TTTATTTGTTTATGGATACT+TGG | + | chr8_4:1788470-1788489 | Msa1306830:intron | 20.0% |
| !!! | GAAAGATTTTAGAAAGGAAT+CGG | - | chr8_4:1785713-1785732 | None:intergenic | 25.0% |
| !! | TTGATGTTAATTGGTTTCTT+TGG | - | chr8_4:1785827-1785846 | None:intergenic | 25.0% |
| !!! | TTTGAATATTGATTTGGTTG+AGG | - | chr8_4:1785869-1785888 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr8_4:1786008-1786027 | None:intergenic | 25.0% |
| ! | AACTAACCTAAACATGATTA+TGG | + | chr8_4:1786461-1786480 | Msa1306830:intron | 25.0% |
| ! | ACTAACCTAAACATGATTAT+GGG | + | chr8_4:1786462-1786481 | Msa1306830:intron | 25.0% |
| !!! | TATATCAAACTTCAAGTTGT+TGG | - | chr8_4:1787563-1787582 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTTTACAAACCA+TGG | + | chr8_4:1787807-1787826 | Msa1306830:intron | 25.0% |
| ! | TCATGTTAGATAAACTATGA+CGG | + | chr8_4:1787834-1787853 | Msa1306830:intron | 25.0% |
| !!! | ATTTGATCTTTATTTTCTGC+AGG | - | chr8_4:1787960-1787979 | None:intergenic | 25.0% |
| ! | AATTTAAGCTGTCCAAAATT+TGG | + | chr8_4:1788090-1788109 | Msa1306830:intron | 25.0% |
| !! | TTGTAACTAATTTTCATGAG+AGG | - | chr8_4:1788152-1788171 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTTTTCTTATTGA+AGG | - | chr8_4:1788426-1788445 | None:intergenic | 25.0% |
| ! | CAATAAGAAAAACCCAAAAT+TGG | + | chr8_4:1788427-1788446 | Msa1306830:CDS | 25.0% |
| !! | CATTTATACTCACCAATTTT+GGG | - | chr8_4:1788442-1788461 | None:intergenic | 25.0% |
| !! | ACATTTATACTCACCAATTT+TGG | - | chr8_4:1788443-1788462 | None:intergenic | 25.0% |
| ! | TGTTGTATAAAAATTGTAGG+AGG | + | chr8_4:1788530-1788549 | Msa1306830:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | + | chr8_4:1788628-1788647 | Msa1306830:CDS | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr8_4:1788831-1788850 | None:intergenic | 25.0% |
| ! | AAAGAAACAATGATATTCAC+GGG | - | chr8_4:1788948-1788967 | None:intergenic | 25.0% |
| ! | CAAAGAAACAATGATATTCA+CGG | - | chr8_4:1788949-1788968 | None:intergenic | 25.0% |
| ! | TCTTCAACTTAATTTACTAG+CGG | - | chr8_4:1788975-1788994 | None:intergenic | 25.0% |
| AAGGAATCGGAAGAAATTAA+GGG | - | chr8_4:1785700-1785719 | None:intergenic | 30.0% | |
| AAAGGAATCGGAAGAAATTA+AGG | - | chr8_4:1785701-1785720 | None:intergenic | 30.0% | |
| !! | CTGGTTGAAAGATTTTAGAA+AGG | - | chr8_4:1785719-1785738 | None:intergenic | 30.0% |
| CAAGTTGTCTTGATGTTAAT+TGG | - | chr8_4:1785836-1785855 | None:intergenic | 30.0% | |
| !!! | CTGGGTTTTGAATATTGATT+TGG | - | chr8_4:1785875-1785894 | None:intergenic | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr8_4:1785998-1786017 | Msa1306830:CDS | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | + | chr8_4:1786016-1786035 | Msa1306830:CDS | 30.0% | |
| AATCAATTCAGTCATTCACT+CGG | - | chr8_4:1786331-1786350 | None:intergenic | 30.0% | |
| ATCAACTCACTTTCAATATC+AGG | - | chr8_4:1786361-1786380 | None:intergenic | 30.0% | |
| !! | ATTGAAAGTGAGTTGATCAA+AGG | + | chr8_4:1786364-1786383 | Msa1306830:intron | 30.0% |
| TTTGCAGAATCCATATACTT+TGG | + | chr8_4:1786609-1786628 | Msa1306830:intron | 30.0% | |
| AATATCAGTAGCTGCAAATT+TGG | + | chr8_4:1786663-1786682 | Msa1306830:CDS | 30.0% | |
| TACTAAACGCAATAGAAATG+TGG | - | chr8_4:1786852-1786871 | None:intergenic | 30.0% | |
| ACTTCTGATAAGAGCAAAAT+TGG | + | chr8_4:1787064-1787083 | Msa1306830:intron | 30.0% | |
| GAAAAATTGGAAATGCTTAC+AGG | + | chr8_4:1787129-1787148 | Msa1306830:intron | 30.0% | |
| ! | TAGAACAATGTCTTTTGACA+GGG | - | chr8_4:1787196-1787215 | None:intergenic | 30.0% |
| ! | TTAGAACAATGTCTTTTGAC+AGG | - | chr8_4:1787197-1787216 | None:intergenic | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | + | chr8_4:1787369-1787388 | Msa1306830:CDS | 30.0% |
| !! | TTTTAGAAATGACACTTTCC+CGG | + | chr8_4:1787434-1787453 | Msa1306830:CDS | 30.0% |
| ! | TGTAGCTTGAATGTTTTATC+CGG | - | chr8_4:1787456-1787475 | None:intergenic | 30.0% |
| ATGACTATACACAATTCTCA+TGG | + | chr8_4:1787518-1787537 | Msa1306830:intron | 30.0% | |
| !! | ATGGAGTTGTTTGTTGTTAT+CGG | + | chr8_4:1787537-1787556 | Msa1306830:intron | 30.0% |
| ! | TTATCTAACATGATTAGCCA+TGG | - | chr8_4:1787827-1787846 | None:intergenic | 30.0% |
| !! | TCACTTTTGTAATTGAGTCT+TGG | - | chr8_4:1787875-1787894 | None:intergenic | 30.0% |
| TCCTGTGTTCATTACTTAAT+CGG | + | chr8_4:1788046-1788065 | Msa1306830:intron | 30.0% | |
| TTCATAGCAATATCTTCACT+TGG | - | chr8_4:1788323-1788342 | None:intergenic | 30.0% | |
| AACAAATAAACTTGATGCTG+TGG | + | chr8_4:1788680-1788699 | Msa1306830:CDS | 30.0% | |
| ATGCTACTAAAGGATGAAAA+AGG | - | chr8_4:1788711-1788730 | None:intergenic | 30.0% | |
| AATAGCAAGTATGCTACTAA+AGG | - | chr8_4:1788721-1788740 | None:intergenic | 30.0% | |
| !! | TTTAGTAGCATACTTGCTAT+TGG | + | chr8_4:1788720-1788739 | Msa1306830:CDS | 30.0% |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | + | chr8_4:1788798-1788817 | Msa1306830:CDS | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | + | chr8_4:1788799-1788818 | Msa1306830:CDS | 30.0% |
| ! | TAGATGATTTAGGATTGTTC+AGG | - | chr8_4:1789037-1789056 | None:intergenic | 30.0% |
| TGCACTTCTATAGATGATTT+AGG | - | chr8_4:1789047-1789066 | None:intergenic | 30.0% | |
| ATACCAGAATGCATTAATGT+TGG | + | chr8_4:1789184-1789203 | Msa1306830:intron | 30.0% | |
| TACCAGAATGCATTAATGTT+GGG | + | chr8_4:1789185-1789204 | Msa1306830:intron | 30.0% | |
| AAATTAAGGGCAAACATGTG+CGG | - | chr8_4:1785687-1785706 | None:intergenic | 35.0% | |
| TTCCTCAATTGAGAATTCAG+TGG | - | chr8_4:1785775-1785794 | None:intergenic | 35.0% | |
| ATTCAAAACCCAGTTCTCAA+AGG | + | chr8_4:1785882-1785901 | Msa1306830:CDS | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr8_4:1785992-1786011 | Msa1306830:CDS | 35.0% |
| !! | AGGTGTTGTTACCAAGTTAA+GGG | + | chr8_4:1786100-1786119 | Msa1306830:CDS | 35.0% |
| !! | GAATCTGGTGCTATCATATT+GGG | + | chr8_4:1786122-1786141 | Msa1306830:CDS | 35.0% |
| !! | AATCTGGTGCTATCATATTG+GGG | + | chr8_4:1786123-1786142 | Msa1306830:CDS | 35.0% |
| TGGTCAAATTACAGGTCTAA+TGG | + | chr8_4:1786164-1786183 | Msa1306830:CDS | 35.0% | |
| GTTCATAGTTACCGATAAGT+GGG | + | chr8_4:1786305-1786324 | Msa1306830:intron | 35.0% | |
| !! | AAAGTGAGTTGATCAAAGGT+AGG | + | chr8_4:1786368-1786387 | Msa1306830:intron | 35.0% |
| !! | AAGTGAGTTGATCAAAGGTA+GGG | + | chr8_4:1786369-1786388 | Msa1306830:intron | 35.0% |
| ! | ATCAAAGGTAGGGATGATTT+TGG | + | chr8_4:1786379-1786398 | Msa1306830:intron | 35.0% |
| ! | TCAAAGGTAGGGATGATTTT+GGG | + | chr8_4:1786380-1786399 | Msa1306830:intron | 35.0% |
| ACCGAAATCATTTCCAAAGT+CGG | + | chr8_4:1786403-1786422 | Msa1306830:intron | 35.0% | |
| ! | TCCGACTTTGGAAATGATTT+CGG | - | chr8_4:1786407-1786426 | None:intergenic | 35.0% |
| AACCTAAACATGATTATGGG+AGG | + | chr8_4:1786465-1786484 | Msa1306830:intron | 35.0% | |
| TACCTCCCATAATCATGTTT+AGG | - | chr8_4:1786470-1786489 | None:intergenic | 35.0% | |
| !! | GAAATAAGTGAGAGAGCATT+AGG | + | chr8_4:1786502-1786521 | Msa1306830:intron | 35.0% |
| ! | CACATTTGTTTCTCTCTATC+AGG | - | chr8_4:1786984-1787003 | None:intergenic | 35.0% |
| CTGATAAGAGCAAAATTGGA+TGG | + | chr8_4:1787068-1787087 | Msa1306830:intron | 35.0% | |
| AATGTGTAACATCAGTTGTG+TGG | + | chr8_4:1787221-1787240 | Msa1306830:intron | 35.0% | |
| TATGTTCTTGAAACCATAGC+AGG | + | chr8_4:1787285-1787304 | Msa1306830:CDS | 35.0% | |
| GCATCAAAGTATATTCCAGA+AGG | + | chr8_4:1787339-1787358 | Msa1306830:CDS | 35.0% | |
| TCAAAGTATATTCCAGAAGG+TGG | + | chr8_4:1787342-1787361 | Msa1306830:CDS | 35.0% | |
| !! | CTAAAGAAAGACGGACTAAT+AGG | + | chr8_4:1787378-1787397 | Msa1306830:CDS | 35.0% |
| GGACTAATAGGAAAGAGAAT+AGG | + | chr8_4:1787390-1787409 | Msa1306830:CDS | 35.0% | |
| ! | GTAGCTTGAATGTTTTATCC+GGG | - | chr8_4:1787455-1787474 | None:intergenic | 35.0% |
| ! | TTAGCTACCTTAACGTTTTC+AGG | - | chr8_4:1787479-1787498 | None:intergenic | 35.0% |
| TTTCATTCAAGGATGCTGAT+AGG | - | chr8_4:1787764-1787783 | None:intergenic | 35.0% | |
| ! | CTTTTGTAATTGAGTCTTGG+TGG | - | chr8_4:1787872-1787891 | None:intergenic | 35.0% |
| TCCGATTAAGTAATGAACAC+AGG | - | chr8_4:1788050-1788069 | None:intergenic | 35.0% | |
| TTGGACAGCTTAAATTGTGT+TGG | - | chr8_4:1788086-1788105 | None:intergenic | 35.0% | |
| AAGTAAATAGGTCTGCAGTA+TGG | - | chr8_4:1788178-1788197 | None:intergenic | 35.0% | |
| TAGGAGGAACTTGATAAGTA+TGG | + | chr8_4:1788546-1788565 | Msa1306830:intron | 35.0% | |
| TTGCAAGCTGAAAAGACAAA+TGG | + | chr8_4:1788582-1788601 | Msa1306830:CDS | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | + | chr8_4:1788588-1788607 | Msa1306830:CDS | 35.0% | |
| ATGACAAGATGGTCAGAAAA+TGG | + | chr8_4:1788639-1788658 | Msa1306830:CDS | 35.0% | |
| TGACAAGATGGTCAGAAAAT+GGG | + | chr8_4:1788640-1788659 | Msa1306830:CDS | 35.0% | |
| !! | CAGCCATTTGGAATTTGTTT+TGG | + | chr8_4:1788786-1788805 | Msa1306830:CDS | 35.0% |
| CCTCCAAAACAAATTCCAAA+TGG | - | chr8_4:1788792-1788811 | None:intergenic | 35.0% | |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | + | chr8_4:1788789-1788808 | Msa1306830:CDS | 35.0% |
| ATGTCACTAACATGGTTGAT+TGG | + | chr8_4:1789072-1789091 | Msa1306830:three_prime_UTR | 35.0% | |
| GTATGGTGAAGTTGTATTCA+TGG | + | chr8_4:1789132-1789151 | Msa1306830:three_prime_UTR | 35.0% | |
| TTCCCAACATTAATGCATTC+TGG | - | chr8_4:1789190-1789209 | None:intergenic | 35.0% | |
| AATTGAGAATTCAGTGGCCA+TGG | - | chr8_4:1785769-1785788 | None:intergenic | 40.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | + | chr8_4:1785943-1785962 | Msa1306830:CDS | 40.0% | |
| TAGAGCTGATCAAGAGAGAA+GGG | + | chr8_4:1785944-1785963 | Msa1306830:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | + | chr8_4:1786038-1786057 | Msa1306830:CDS | 40.0% | |
| !! | CAGGTGTTGTTACCAAGTTA+AGG | + | chr8_4:1786099-1786118 | Msa1306830:CDS | 40.0% |
| GTTACCAAGTTAAGGGAATC+TGG | + | chr8_4:1786107-1786126 | Msa1306830:CDS | 40.0% | |
| !! | GGAATCTGGTGCTATCATAT+TGG | + | chr8_4:1786121-1786140 | Msa1306830:CDS | 40.0% |
| ATTTGACCACTCACTCAAAG+TGG | - | chr8_4:1786153-1786172 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCAAATTAC+AGG | + | chr8_4:1786156-1786175 | Msa1306830:CDS | 40.0% | |
| GGTTCATAGTTACCGATAAG+TGG | + | chr8_4:1786304-1786323 | Msa1306830:intron | 40.0% | |
| !! | ATAAGTGAGAGAGCATTAGG+TGG | + | chr8_4:1786505-1786524 | Msa1306830:intron | 40.0% |
| !! | TAAGTGAGAGAGCATTAGGT+GGG | + | chr8_4:1786506-1786525 | Msa1306830:intron | 40.0% |
| CAGGGATCATCCAAAGTATA+TGG | - | chr8_4:1786622-1786641 | None:intergenic | 40.0% | |
| TATACTTTGGATGATCCCTG+TGG | + | chr8_4:1786622-1786641 | Msa1306830:CDS | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | + | chr8_4:1786679-1786698 | Msa1306830:CDS | 40.0% |
| !! | ACACACACAAGATTTTGGCA+TGG | - | chr8_4:1787103-1787122 | None:intergenic | 40.0% |
| TGTGTGTGTGCGTGAAAAAT+TGG | + | chr8_4:1787116-1787135 | Msa1306830:intron | 40.0% | |
| ! | ACAATGTCTTTTGACAGGGA+AGG | - | chr8_4:1787192-1787211 | None:intergenic | 40.0% |
| !!! | TCAGTTGTGTGGTTTTGTAC+AGG | + | chr8_4:1787232-1787251 | Msa1306830:intron | 40.0% |
| ! | TTTTGTACAGGCCAATTTGC+AGG | + | chr8_4:1787244-1787263 | Msa1306830:intron | 40.0% |
| TCTGATACAGTCCTGCAAAT+TGG | - | chr8_4:1787258-1787277 | None:intergenic | 40.0% | |
| AGCTACACCTGAAAACGTTA+AGG | + | chr8_4:1787469-1787488 | Msa1306830:CDS | 40.0% | |
| !! | AATTGAGTCTTGGTGGTGTA+TGG | - | chr8_4:1787865-1787884 | None:intergenic | 40.0% |
| ! | TGTCACCATCGTCCAAATTT+TGG | - | chr8_4:1788105-1788124 | None:intergenic | 40.0% |
| GATGAAATTATCAGGCAGAG+AGG | + | chr8_4:1788242-1788261 | Msa1306830:intron | 40.0% | |
| GTGATGCTACTAAGTCTTTG+AGG | - | chr8_4:1788376-1788395 | None:intergenic | 40.0% | |
| CAGCTTGCAACATGATATCT+TGG | - | chr8_4:1788572-1788591 | None:intergenic | 40.0% | |
| !! | AGTAGCATACTTGCTATTGG+AGG | + | chr8_4:1788723-1788742 | Msa1306830:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr8_4:1788761-1788780 | Msa1306830:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr8_4:1788762-1788781 | Msa1306830:CDS | 40.0% | |
| TATGAAAAGGGTCAGCCATT+TGG | + | chr8_4:1788774-1788793 | Msa1306830:CDS | 40.0% | |
| CAAACTTCTGACTTTCGAAG+AGG | - | chr8_4:1788891-1788910 | None:intergenic | 40.0% | |
| ACAATGATATTCACGGGAAG+TGG | - | chr8_4:1788942-1788961 | None:intergenic | 40.0% | |
| GCATGTTGATGTCACTAACA+TGG | + | chr8_4:1789064-1789083 | Msa1306830:three_prime_UTR | 40.0% | |
| TATGGATGCTGCTACATGTA+TGG | + | chr8_4:1789115-1789134 | Msa1306830:three_prime_UTR | 40.0% | |
| GGAAGTTCACCAAGTAAGAT+GGG | + | chr8_4:1789206-1789225 | Msa1306830:intron | 40.0% | |
| TGTGTTGAACCCATCTTACT+TGG | - | chr8_4:1789218-1789237 | None:intergenic | 40.0% | |
| TGGTAGTTGATTGCGTAGCA+GGG | - | chr8_4:1785749-1785768 | None:intergenic | 45.0% | |
| ATGGTAGTTGATTGCGTAGC+AGG | - | chr8_4:1785750-1785769 | None:intergenic | 45.0% | |
| TGCTACGCAATCAACTACCA+TGG | + | chr8_4:1785749-1785768 | Msa1306830:CDS | 45.0% | |
| GGCCACTGAATTCTCAATTG+AGG | + | chr8_4:1785770-1785789 | Msa1306830:CDS | 45.0% | |
| ! | CCAAGACACCTTTGAGAACT+GGG | - | chr8_4:1785893-1785912 | None:intergenic | 45.0% |
| ! | TCCAAGACACCTTTGAGAAC+TGG | - | chr8_4:1785894-1785913 | None:intergenic | 45.0% |
| !! | AGTTCTCAAAGGTGTCTTGG+AGG | + | chr8_4:1785893-1785912 | Msa1306830:CDS | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr8_4:1785924-1785943 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | + | chr8_4:1785970-1785989 | Msa1306830:CDS | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | - | chr8_4:1785978-1785997 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | + | chr8_4:1785978-1785997 | Msa1306830:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | + | chr8_4:1786064-1786083 | Msa1306830:CDS | 45.0% |
| GTAACAACACCTGCATCTCT+TGG | - | chr8_4:1786092-1786111 | None:intergenic | 45.0% | |
| AGCACCAGATTCCCTTAACT+TGG | - | chr8_4:1786114-1786133 | None:intergenic | 45.0% | |
| !! | TGGTGCTATCATATTGGGGA+AGG | + | chr8_4:1786127-1786146 | Msa1306830:CDS | 45.0% |
| ! | CTATGTTTGGCTTCCGACTT+TGG | - | chr8_4:1786419-1786438 | None:intergenic | 45.0% |
| !! | GGGCGTTTTGGTAGATTATG+AGG | + | chr8_4:1786526-1786545 | Msa1306830:intron | 45.0% |
| GATCCACTACTTGATCCACA+GGG | - | chr8_4:1786640-1786659 | None:intergenic | 45.0% | |
| TGATCCACTACTTGATCCAC+AGG | - | chr8_4:1786641-1786660 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr8_4:1786694-1786713 | Msa1306830:CDS | 45.0% |
| ! | AAGACCTGAAGGGCATAAGA+TGG | - | chr8_4:1786722-1786741 | None:intergenic | 45.0% |
| CCACTGAGTTAAGACCTGAA+GGG | - | chr8_4:1786732-1786751 | None:intergenic | 45.0% | |
| ACCACTGAGTTAAGACCTGA+AGG | - | chr8_4:1786733-1786752 | None:intergenic | 45.0% | |
| TTCAGGTCTTAACTCAGTGG+TGG | + | chr8_4:1786732-1786751 | Msa1306830:CDS | 45.0% | |
| TCAGGTCTTAACTCAGTGGT+GGG | + | chr8_4:1786733-1786752 | Msa1306830:CDS | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | - | chr8_4:1786766-1786785 | None:intergenic | 45.0% | |
| GTGTAATTCCAATCAGCCCA+AGG | + | chr8_4:1786791-1786810 | Msa1306830:CDS | 45.0% | |
| AATGTGGACAAACGCTGTAC+AGG | - | chr8_4:1786836-1786855 | None:intergenic | 45.0% | |
| ! | CGCACACACACACAAGATTT+TGG | - | chr8_4:1787108-1787127 | None:intergenic | 45.0% |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | - | chr8_4:1787301-1787320 | None:intergenic | 45.0% |
| AATTGAGCATAGCCACCTTC+TGG | - | chr8_4:1787357-1787376 | None:intergenic | 45.0% | |
| GCTGTCCAAAATTTGGACGA+TGG | + | chr8_4:1788097-1788116 | Msa1306830:intron | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | + | chr8_4:1788732-1788751 | Msa1306830:CDS | 45.0% |
| ! | TGACCCTTTTCATATCCTGC+TGG | - | chr8_4:1788768-1788787 | None:intergenic | 45.0% |
| ACTTCTGACTTTCGAAGAGG+AGG | - | chr8_4:1788888-1788907 | None:intergenic | 45.0% | |
| TGATATTCACGGGAAGTGGA+GGG | - | chr8_4:1788938-1788957 | None:intergenic | 45.0% | |
| ATGATATTCACGGGAAGTGG+AGG | - | chr8_4:1788939-1788958 | None:intergenic | 45.0% | |
| !! | TTGATTGGTCTGAAAACCCG+CGG | + | chr8_4:1789087-1789106 | Msa1306830:three_prime_UTR | 45.0% |
| TGAAAACCCGCGGTACAATA+TGG | + | chr8_4:1789097-1789116 | Msa1306830:three_prime_UTR | 45.0% | |
| GGGAAGTTCACCAAGTAAGA+TGG | + | chr8_4:1789205-1789224 | Msa1306830:intron | 45.0% | |
| AGTTGATTGCGTAGCAGGGA+AGG | - | chr8_4:1785745-1785764 | None:intergenic | 50.0% | |
| !! | CCCAGTTCTCAAAGGTGTCT+TGG | + | chr8_4:1785890-1785909 | Msa1306830:CDS | 50.0% |
| !! | GAGAGAAGGGAAAAAGCACC+TGG | + | chr8_4:1785957-1785976 | Msa1306830:CDS | 50.0% |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | + | chr8_4:1786056-1786075 | Msa1306830:CDS | 50.0% |
| AGGTCTAATGGAGCTCCAAG+TGG | + | chr8_4:1786176-1786195 | Msa1306830:CDS | 50.0% | |
| CTAATGGAGCTCCAAGTGGT+TGG | + | chr8_4:1786180-1786199 | Msa1306830:CDS | 50.0% | |
| TACCTTTCCTTGTCCACCTC+TGG | - | chr8_4:1786210-1786229 | None:intergenic | 50.0% | |
| CATTCACTCGGCCCACTTAT+CGG | - | chr8_4:1786319-1786338 | None:intergenic | 50.0% | |
| !! | AGAGCATTAGGTGGGCGTTT+TGG | + | chr8_4:1786514-1786533 | Msa1306830:intron | 50.0% |
| GATCCCTGTGGATCAAGTAG+TGG | + | chr8_4:1786634-1786653 | Msa1306830:CDS | 50.0% | |
| AGGGCATAAGATGGAGCCAT+CGG | - | chr8_4:1786713-1786732 | None:intergenic | 50.0% | |
| CCCTTCAGGTCTTAACTCAG+TGG | + | chr8_4:1786729-1786748 | Msa1306830:CDS | 50.0% | |
| GTGGGCATCAAACCAACAGT+TGG | + | chr8_4:1786751-1786770 | Msa1306830:CDS | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr8_4:1786769-1786788 | Msa1306830:CDS | 50.0% |
| GCTCCAACTTTCTGCTAGAG+AGG | + | chr8_4:1787933-1787952 | Msa1306830:intron | 50.0% | |
| GGTCCTCTCTAGCAGAAAGT+TGG | - | chr8_4:1787939-1787958 | None:intergenic | 50.0% | |
| AGCATCACCAGTGAGAAGCT+TGG | + | chr8_4:1788388-1788407 | Msa1306830:CDS | 50.0% | |
| ACATCTGCCAAGCTTCTCAC+TGG | - | chr8_4:1788398-1788417 | None:intergenic | 50.0% | |
| CCTGCTGGAACAATGATTCC+AGG | - | chr8_4:1788753-1788772 | None:intergenic | 50.0% | |
| CCTGGAATCATTGTTCCAGC+AGG | + | chr8_4:1788750-1788769 | Msa1306830:CDS | 50.0% | |
| TCTGACTTTCGAAGAGGAGG+TGG | - | chr8_4:1788885-1788904 | None:intergenic | 50.0% | |
| ATATTCACGGGAAGTGGAGG+GGG | - | chr8_4:1788936-1788955 | None:intergenic | 50.0% | |
| GATATTCACGGGAAGTGGAG+GGG | - | chr8_4:1788937-1788956 | None:intergenic | 50.0% | |
| CAGCATCCATATTGTACCGC+GGG | - | chr8_4:1789106-1789125 | None:intergenic | 50.0% | |
| GCAGCATCCATATTGTACCG+CGG | - | chr8_4:1789107-1789126 | None:intergenic | 50.0% | |
| TGCGTAGCAGGGAAGGTAAC+TGG | - | chr8_4:1785738-1785757 | None:intergenic | 55.0% | |
| ! | TCAGTGGTGCCAAGAGATGC+AGG | + | chr8_4:1786080-1786099 | Msa1306830:CDS | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr8_4:1786144-1786163 | Msa1306830:CDS | 55.0% |
| TGCCAGAGGTGGACAAGGAA+AGG | + | chr8_4:1786205-1786224 | Msa1306830:CDS | 55.0% | |
| GGCTCCATCTTATGCCCTTC+AGG | + | chr8_4:1786715-1786734 | Msa1306830:CDS | 55.0% | |
| GTGTCTTGCCTTGGGCTGAT+TGG | - | chr8_4:1786802-1786821 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+CGG | + | chr8_4:1786805-1786824 | Msa1306830:CDS | 55.0% | |
| ACCCGACTGTGTCTTGCCTT+GGG | - | chr8_4:1786810-1786829 | None:intergenic | 55.0% | |
| TACCCGACTGTGTCTTGCCT+TGG | - | chr8_4:1786811-1786830 | None:intergenic | 55.0% | |
| !! | CAGGCAGAGAGGTGCAGTTT+TGG | + | chr8_4:1788253-1788272 | Msa1306830:intron | 55.0% |
| CCTCTGGCACTCCAACCACT+TGG | - | chr8_4:1786194-1786213 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTTGGAGTGCCAG+AGG | + | chr8_4:1786191-1786210 | Msa1306830:CDS | 60.0% |
| ! | AGTGGTTGGAGTGCCAGAGG+TGG | + | chr8_4:1786194-1786213 | Msa1306830:CDS | 60.0% |
| ! | TGGAGTGCCAGAGGTGGACA+AGG | + | chr8_4:1786200-1786219 | Msa1306830:CDS | 60.0% |
| GCCCAAGGCAAGACACAGTC+GGG | + | chr8_4:1786806-1786825 | Msa1306830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 1785669 | 1789332 | 1785669 | ID=Msa1306830;Name=Msa1306830 |
| chr8_4 | mRNA | 1785669 | 1789332 | 1785669 | ID=Msa1306830-mRNA-1;Parent=Msa1306830;Name=Msa1306830-mRNA-1;_AED=0.42;_eAED=0.42;_QI=21|1|1|1|0.8|0.66|6|357|513 |
| chr8_4 | exon | 1785669 | 1786226 | 1785669 | ID=Msa1306830-mRNA-1:exon:625;Parent=Msa1306830-mRNA-1 |
| chr8_4 | exon | 1786616 | 1786827 | 1786616 | ID=Msa1306830-mRNA-1:exon:626;Parent=Msa1306830-mRNA-1 |
| chr8_4 | exon | 1787254 | 1787490 | 1787254 | ID=Msa1306830-mRNA-1:exon:627;Parent=Msa1306830-mRNA-1 |
| chr8_4 | exon | 1788256 | 1788448 | 1788256 | ID=Msa1306830-mRNA-1:exon:628;Parent=Msa1306830-mRNA-1 |
| chr8_4 | exon | 1788549 | 1789183 | 1788549 | ID=Msa1306830-mRNA-1:exon:629;Parent=Msa1306830-mRNA-1 |
| chr8_4 | exon | 1789248 | 1789332 | 1789248 | ID=Msa1306830-mRNA-1:exon:630;Parent=Msa1306830-mRNA-1 |
| chr8_4 | five_prime_UTR | 1785669 | 1785689 | 1785669 | ID=Msa1306830-mRNA-1:five_prime_utr;Parent=Msa1306830-mRNA-1 |
| chr8_4 | CDS | 1785690 | 1786226 | 1785690 | ID=Msa1306830-mRNA-1:cds;Parent=Msa1306830-mRNA-1 |
| chr8_4 | CDS | 1786616 | 1786827 | 1786616 | ID=Msa1306830-mRNA-1:cds;Parent=Msa1306830-mRNA-1 |
| chr8_4 | CDS | 1787254 | 1787490 | 1787254 | ID=Msa1306830-mRNA-1:cds;Parent=Msa1306830-mRNA-1 |
| chr8_4 | CDS | 1788256 | 1788448 | 1788256 | ID=Msa1306830-mRNA-1:cds;Parent=Msa1306830-mRNA-1 |
| chr8_4 | CDS | 1788549 | 1788911 | 1788549 | ID=Msa1306830-mRNA-1:cds;Parent=Msa1306830-mRNA-1 |
| chr8_4 | three_prime_UTR | 1788912 | 1789183 | 1788912 | ID=Msa1306830-mRNA-1:three_prime_utr;Parent=Msa1306830-mRNA-1 |
| chr8_4 | three_prime_UTR | 1789248 | 1789332 | 1789248 | ID=Msa1306830-mRNA-1:three_prime_utr;Parent=Msa1306830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
