AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0114990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114990 MtrunA17_Chr1g0206011 86.441 177 24 0 132 308 15 191 3.79e-113 326
Msa0114990 MtrunA17_Chr1g0206001 79.577 142 29 0 188 329 3 144 1.95e-86 256
Msa0114990 MtrunA17_Chr2g0301841 53.846 195 88 1 125 319 94 286 9.44e-77 237
Msa0114990 MtrunA17_Chr1g0206031 74.342 152 30 1 95 237 14 165 5.83e-76 230
Msa0114990 MtrunA17_Chr4g0031451 55.556 198 85 2 132 328 2 197 5.06e-75 229
Msa0114990 MtrunA17_Chr4g0031441 44.792 288 126 5 14 301 9 263 4.28e-74 231
Msa0114990 MtrunA17_Chr2g0301761 46.465 198 102 2 116 311 67 262 8.63e-65 205
Msa0114990 MtrunA17_Chr2g0301821 47.059 187 97 1 125 311 85 269 1.44e-62 200
Msa0114990 MtrunA17_Chr2g0301741 45.685 197 105 1 117 313 59 253 2.48e-61 197
Msa0114990 MtrunA17_Chr8g0344981 47.739 199 100 3 116 313 52 247 7.70e-59 191
Msa0114990 MtrunA17_Chr3g0103941 40.670 209 122 2 118 325 37 244 9.56e-55 179
Msa0114990 MtrunA17_Chr2g0301751 41.232 211 109 3 116 313 68 276 1.76e-54 179
Msa0114990 MtrunA17_Chr3g0103851 43.284 201 111 2 127 325 247 446 1.62e-53 182
Msa0114990 MtrunA17_Chr3g0103961 39.904 208 120 3 120 325 48 252 3.80e-51 170
Msa0114990 MtrunA17_Chr3g0103871 42.935 184 104 1 126 308 61 244 8.50e-50 166
Msa0114990 MtrunA17_Chr3g0103931 39.713 209 120 3 118 325 44 247 1.20e-49 166
Msa0114990 MtrunA17_Chr2g0301731 33.865 251 140 4 66 315 28 253 4.88e-49 165
Msa0114990 MtrunA17_Chr3g0103911 38.462 195 118 2 118 311 37 230 1.09e-46 157
Msa0114990 MtrunA17_Chr3g0103891 38.462 195 118 2 118 311 37 230 1.77e-46 157
Msa0114990 MtrunA17_Chr4g0031461 57.600 125 50 2 205 328 1 123 1.92e-46 153
Msa0114990 MtrunA17_Chr3g0104451 40.191 209 115 3 127 325 26 234 1.17e-45 155
Msa0114990 MtrunA17_Chr3g0104441 40.394 203 112 2 127 320 30 232 1.29e-43 151
Msa0114990 MtrunA17_Chr2g0291681 37.915 211 122 2 127 329 213 422 1.70e-42 154
Msa0114990 MtrunA17_Chr5g0425671 38.462 195 109 3 120 308 98 287 3.25e-41 145
Msa0114990 MtrunA17_Chr4g0029991 34.762 210 127 4 127 328 307 514 4.01e-36 136
Msa0114990 MtrunA17_Chr5g0434721 25.526 333 195 7 3 325 29 318 3.43e-34 127
Msa0114990 MtrunA17_Chr3g0103861 32.227 211 105 4 112 318 44 220 4.00e-30 115
Msa0114990 MtrunA17_Chr3g0103951 42.276 123 68 2 187 308 20 140 6.08e-26 101
Msa0114990 MtrunA17_Chr1g0206041 92.857 42 3 0 265 306 1 42 4.00e-23 91.7
Msa0114990 MtrunA17_Chr3g0100351 29.268 205 92 4 127 328 46 200 4.85e-22 92.0
Msa0114990 MtrunA17_Chr3g0100371 28.458 253 121 7 79 330 24 217 2.92e-20 88.2
Msa0114990 MtrunA17_Chr1g0164621 28.571 252 149 8 77 324 1215 1439 7.17e-18 84.7
Msa0114990 MtrunA17_Chr3g0082091 28.346 254 147 9 77 324 1213 1437 1.99e-17 83.6
Msa0114990 MtrunA17_Chr3g0110331 27.523 218 146 8 118 330 126 336 4.56e-15 75.9
Msa0114990 MtrunA17_Chr3g0123681 29.048 210 129 7 121 324 1522 1717 4.59e-15 76.3
Msa0114990 MtrunA17_Chr3g0103841 45.714 70 37 1 257 325 1 70 1.76e-14 67.8
Msa0114990 MtrunA17_Chr2g0329221 29.952 207 132 9 125 326 145 343 1.20e-13 71.6
Msa0114990 MtrunA17_Chr5g0394311 37.963 108 58 4 213 317 169 270 1.28e-13 70.5
Msa0114990 MtrunA17_Chr3g0110341 24.590 305 210 11 32 329 67 358 4.21e-13 70.1
Msa0114990 MtrunA17_Chr4g0038181 25.778 225 147 8 104 317 67 282 3.79e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114990 AT3G14250.1 36.250 320 157 7 15 326 18 298 3.46e-73 228
Msa0114990 AT3G53690.1 50.259 193 95 1 127 319 115 306 1.27e-70 223
Msa0114990 AT5G37560.1 37.799 209 123 5 120 325 175 379 9.23e-42 150
Msa0114990 AT4G19670.2 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.3 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.5 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.7 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.4 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.1 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT4G19670.6 37.500 240 131 5 103 328 183 417 9.71e-42 152
Msa0114990 AT3G45470.1 33.498 203 132 3 127 328 6 206 5.03e-36 130
Msa0114990 AT2G21420.1 37.000 200 117 4 127 322 187 381 1.94e-35 134
Msa0114990 AT5G60250.1 33.962 212 127 4 127 328 301 509 5.29e-33 129
Msa0114990 AT3G45580.1 32.524 206 133 4 127 328 173 376 1.81e-32 125
Msa0114990 AT2G25370.2 35.859 198 121 4 127 321 247 441 2.50e-31 124
Msa0114990 AT3G45540.1 31.731 208 130 6 127 329 100 300 2.86e-31 120
Msa0114990 AT3G45540.2 31.731 208 130 6 127 329 71 271 3.65e-31 120
Msa0114990 AT2G25370.1 35.859 198 121 4 127 321 304 498 4.26e-31 123
Msa0114990 AT2G25360.1 35.749 207 126 6 126 328 89 292 1.77e-30 119
Msa0114990 AT2G26135.1 31.304 230 140 7 103 326 135 352 2.11e-29 116
Msa0114990 AT2G26130.1 28.986 207 143 4 127 331 159 363 5.82e-27 110
Msa0114990 AT3G45555.1 26.961 204 139 5 107 307 2 198 2.35e-24 99.0
Msa0114990 AT3G45460.1 28.934 197 122 5 137 331 181 361 2.05e-22 97.1
Msa0114990 AT3G43750.1 30.481 187 123 5 127 308 155 339 1.16e-21 94.4
Msa0114990 AT3G45480.1 30.303 198 118 6 135 328 165 346 1.63e-21 94.4
Msa0114990 AT2G19610.2 30.846 201 130 4 127 319 203 402 8.88e-20 89.7
Msa0114990 AT5G10370.1 29.379 177 115 6 145 317 1580 1750 8.98e-17 82.0
Msa0114990 AT4G01020.1 27.411 197 123 6 145 327 1577 1767 4.40e-16 80.1
Msa0114990 AT2G19610.1 28.042 189 128 3 127 308 203 390 3.07e-14 73.6
Msa0114990 AT3G45510.1 29.286 140 95 3 127 263 66 204 6.86e-14 70.9
Msa0114990 AT3G27710.1 27.404 208 143 6 121 325 115 317 1.09e-13 72.0
Msa0114990 AT3G45570.1 28.472 144 98 3 127 266 163 305 4.50e-12 66.2
Msa0114990 AT2G31770.1 27.570 214 138 8 125 330 126 330 7.31e-12 66.6
Msa0114990 AT2G31510.3 27.751 209 134 10 125 326 63 261 3.61e-11 64.3
Msa0114990 AT2G31510.1 27.751 209 134 10 125 326 135 333 6.03e-11 63.9
Msa0114990 AT2G31510.2 27.751 209 134 10 125 326 135 333 6.18e-11 63.5

Find 119 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTCCATTGTTCTTGTTT+TGG 0.149888 1_3:-33504006 None:intergenic
TTGACATTGACGCAATATTT+AGG 0.159956 1_3:+33503625 Msa0114990:five_prime_UTR
TAAGTTCTATTGCCCGTTTA+AGG 0.213987 1_3:+33504687 Msa0114990:CDS
ACAATTCACTTGAAATAGTT+TGG 0.233189 1_3:+33503577 Msa0114990:five_prime_UTR
ACAGTTTCAAGAAACCTTAT+TGG 0.239473 1_3:+33504186 Msa0114990:CDS
CACCTATCAATCAACTCTTT+TGG 0.279931 1_3:-33504625 None:intergenic
GCTATGCTTGCGGTGCAAAA+TGG 0.311093 1_3:+33505425 Msa0114990:CDS
TGTCATGTCACTTGGCATCC+TGG 0.318346 1_3:+33504802 Msa0114990:CDS
CAATTCACTTGAAATAGTTT+GGG 0.318375 1_3:+33503578 Msa0114990:five_prime_UTR
ATGAAGGAAGAGAAGATGTT+AGG 0.319698 1_3:+33504737 Msa0114990:CDS
TGACATTGACGCAATATTTA+GGG 0.320741 1_3:+33503626 Msa0114990:five_prime_UTR
AGTAAGATCAATAGCGTGTT+TGG 0.328291 1_3:-33505828 None:intergenic
TAAAGGTTCATATATATAAA+TGG 0.335068 1_3:-33503735 None:intergenic
GTCATGTCACTTGGCATCCT+GGG 0.343483 1_3:+33504803 Msa0114990:CDS
TGTTAGAGCTTGAATCTTGC+AGG 0.348834 1_3:+33504593 Msa0114990:CDS
CTTGAAATAGTTTGGGGAAG+TGG 0.350279 1_3:+33503585 Msa0114990:five_prime_UTR
TGAAGGAAGAGAAGATGTTA+GGG 0.359913 1_3:+33504738 Msa0114990:CDS
ATTTCAGAACAATCCTTAAA+CGG 0.364133 1_3:-33504700 None:intergenic
ATGGTGGTGGTGACGGCATA+AGG 0.364881 1_3:-33504330 None:intergenic
AGGAAAAGGATGAAGGGTTT+TGG 0.374297 1_3:-33504228 None:intergenic
TTTATGCTATGCTTCTTTGT+TGG 0.376436 1_3:+33503754 Msa0114990:five_prime_UTR
ACAACTAAGCAGTAACAATA+TGG 0.386434 1_3:+33505889 Msa0114990:three_prime_UTR
AGATTTGTGCGGAAACAAAA+AGG 0.391913 1_3:+33504440 Msa0114990:CDS
GGACGTTAGGGTCAATTTCA+TGG 0.396876 1_3:-33504132 None:intergenic
AGTGATGACAGAGGCCAATA+AGG 0.404886 1_3:-33504200 None:intergenic
TCATCGGAGACAGGGACGTT+AGG 0.409844 1_3:-33504145 None:intergenic
AACAAAGAAGCATAGCATAA+AGG 0.429113 1_3:-33503752 None:intergenic
ACACATTTGTTATGTTGTCT+TGG 0.442504 1_3:-33504543 None:intergenic
TTTCAGAACAATCCTTAAAC+GGG 0.442510 1_3:-33504699 None:intergenic
GCCAAGACGTGCATGATTCA+TGG 0.450431 1_3:-33505681 None:intergenic
CTAATAAGAAAAGGTGGAAA+AGG 0.462208 1_3:+33504899 Msa0114990:CDS
TTCCAAAAGAGTTGATTGAT+AGG 0.467343 1_3:+33504623 Msa0114990:CDS
TCAACATAGAACCTGCATCT+TGG 0.469195 1_3:-33504925 None:intergenic
GTAAGATCAATAGCGTGTTT+GGG 0.469588 1_3:-33505827 None:intergenic
GTCACTTGGCATCCTGGGGT+TGG 0.476032 1_3:+33504808 Msa0114990:CDS
GAGGATGGTTGTTGCGCCAT+TGG 0.477772 1_3:-33504055 None:intergenic
AACGAACGAGTTTATTAAAG+TGG 0.477849 1_3:-33503969 None:intergenic
ATAACAAATGTGTCTTGTCC+TGG 0.488527 1_3:+33504553 Msa0114990:CDS
CATTGGGAAGCGTGAAAACA+TGG 0.489244 1_3:+33505782 Msa0114990:three_prime_UTR
GGGTGAGTGTGAAAGGTTAG+TGG 0.489847 1_3:-33503947 None:intergenic
CATCGGAGACAGGGACGTTA+GGG 0.494082 1_3:-33504144 None:intergenic
TAAAGTGGGGTGAGTGTGAA+AGG 0.494266 1_3:-33503954 None:intergenic
TTGTCCTGGTTTGAACTGCA+AGG 0.494597 1_3:+33504567 Msa0114990:CDS
GCGTACTTGTCATCGGAGAC+AGG 0.495039 1_3:-33504154 None:intergenic
GGGATGAAATATATTTATTG+TGG 0.498213 1_3:+33505494 Msa0114990:three_prime_UTR
GGAAAAGGTGTCCAAGATGC+AGG 0.500394 1_3:+33504914 Msa0114990:CDS
GCATCCTGGGGTTGGTTGTG+AGG 0.501263 1_3:+33504816 Msa0114990:CDS
AATCTGCTCTTTAAACAGTA+AGG 0.503382 1_3:-33505549 None:intergenic
TCTTCTTCCTCAAAATCTCT+CGG 0.506168 1_3:+33503672 Msa0114990:five_prime_UTR
GGAAGAAGAAAGTGAAAGAG+AGG 0.506844 1_3:-33503658 None:intergenic
TCATCGAAGGCTATTGATGT+TGG 0.512485 1_3:+33504370 Msa0114990:CDS
AAATTAGATAGATGCAAGAA+GGG 0.513950 1_3:+33505474 Msa0114990:exon
ATAGCAAGTACACTTTCAAA+AGG 0.515766 1_3:-33505644 None:intergenic
TGAATGTGGATGAAAGAGGA+AGG 0.518591 1_3:+33504851 Msa0114990:CDS
GTGCAAGCTGTCATGTCACT+TGG 0.521854 1_3:+33504794 Msa0114990:CDS
GAAATTAGATAGATGCAAGA+AGG 0.523692 1_3:+33505473 Msa0114990:exon
GCCAAGAAGGAAAAGGATGA+AGG 0.524777 1_3:-33504235 None:intergenic
CACATTCAGAACAAAATGAA+TGG 0.525752 1_3:-33504495 None:intergenic
CATCATTTGCGAGATTTGTG+CGG 0.525830 1_3:+33504429 Msa0114990:CDS
AGATCTCCTTGTGAGGGAGC+TGG 0.527981 1_3:+33504876 Msa0114990:CDS
ACCATGAATCATGCACGTCT+TGG 0.531957 1_3:+33505680 Msa0114990:three_prime_UTR
TTAAACGGGCAATAGAACTT+AGG 0.535232 1_3:-33504685 None:intergenic
TCGGTCATCGTCATCATCAT+CGG 0.539287 1_3:+33503691 Msa0114990:five_prime_UTR
TGGTGGTGGTGACGGCATAA+GGG 0.541971 1_3:-33504329 None:intergenic
GATGTTTGCATATTACGTGC+AGG 0.550867 1_3:+33504959 Msa0114990:CDS
ACGAACGAGTTTATTAAAGT+GGG 0.563896 1_3:-33503968 None:intergenic
CGTCTACGGTGTCAAGGACA+AGG 0.566082 1_3:-33504084 None:intergenic
TTCTGAAATGTTGCTTGATG+AGG 0.567131 1_3:+33504714 Msa0114990:CDS
TGCTTCAGCGTACTTGTCAT+CGG 0.567735 1_3:-33504161 None:intergenic
CAAAACAATCTATGACAAGA+AGG 0.568712 1_3:-33504772 None:intergenic
CAGTGCAATGGTGGTGGTGA+CGG 0.569709 1_3:-33504337 None:intergenic
TATTAGCCAGCTCCCTCACA+AGG 0.570249 1_3:-33504882 None:intergenic
TAAGGAACTTCCCCTATCCA+TGG 0.571888 1_3:-33505531 None:intergenic
TGTCCTGGTTTGAACTGCAA+GGG 0.576754 1_3:+33504568 Msa0114990:CDS
GGGAGCTGGCTAATAAGAAA+AGG 0.577777 1_3:+33504890 Msa0114990:CDS
GGTGTCAAGGACAAGGAATG+AGG 0.580931 1_3:-33504077 None:intergenic
CAAAAGAGTTGATTGATAGG+TGG 0.583180 1_3:+33504626 Msa0114990:CDS
GTTAGGGTCAATTTCATGGT+CGG 0.587481 1_3:-33504128 None:intergenic
TCATGTCACTTGGCATCCTG+GGG 0.587704 1_3:+33504804 Msa0114990:CDS
TTGGCCTGTGTTTGTTTCTG+CGG 0.591921 1_3:+33505699 Msa0114990:three_prime_UTR
AAAAGTCGTCTACGGTGTCA+AGG 0.592520 1_3:-33504090 None:intergenic
GATGCTACACACGGTAATGA+TGG 0.595205 1_3:-33504265 None:intergenic
CTGCGTAGCATCTTCATCGA+AGG 0.598053 1_3:+33504357 Msa0114990:CDS
AATTTCATGGTCGGAGACAA+CGG 0.598561 1_3:-33504119 None:intergenic
ACACCCTTGCAGTTCAAACC+AGG 0.598898 1_3:-33504571 None:intergenic
GCAAAATGGACATCTTCTCA+TGG 0.606786 1_3:+33505439 Msa0114990:CDS
CAAATCTCGCAAATGATGAT+CGG 0.607678 1_3:-33504424 None:intergenic
TGATGGTGGTGGTGCCAAGA+AGG 0.616247 1_3:-33504248 None:intergenic
GGAGTTTCAAACAATGAATG+TGG 0.616690 1_3:+33504837 Msa0114990:CDS
ACAATGAATGTGGATGAAAG+AGG 0.616843 1_3:+33504847 Msa0114990:CDS
CCAAGAAGGAAAAGGATGAA+GGG 0.617075 1_3:-33504234 None:intergenic
GAATGTGGATGAAAGAGGAA+GGG 0.623790 1_3:+33504852 Msa0114990:CDS
GAAGGGAAGATCTCCTTGTG+AGG 0.624223 1_3:+33504869 Msa0114990:CDS
TTTGATATATCCATGGATAG+GGG 0.625407 1_3:+33505521 Msa0114990:three_prime_UTR
TGGTGGTGCCAAGAAGGAAA+AGG 0.625615 1_3:-33504242 None:intergenic
AAGGGAAGATCTCCTTGTGA+GGG 0.626069 1_3:+33504870 Msa0114990:CDS
AACTCCTCACAACCAACCCC+AGG 0.626419 1_3:-33504820 None:intergenic
GCTACGCAGTGCAATGGTGG+TGG 0.627167 1_3:-33504343 None:intergenic
AGCTGGCTAATAAGAAAAGG+TGG 0.627214 1_3:+33504893 Msa0114990:CDS
AAAACAATCTATGACAAGAA+GGG 0.629017 1_3:-33504771 None:intergenic
GGAGAAGTAAAAGTCGTCTA+CGG 0.631739 1_3:-33504098 None:intergenic
TTTCCCCAAAACAAGAACAA+TGG 0.635586 1_3:+33504001 Msa0114990:five_prime_UTR
AGGACAAGGAATGAGGAGGA+TGG 0.637593 1_3:-33504070 None:intergenic
CGTACTTGTCATCGGAGACA+GGG 0.638650 1_3:-33504153 None:intergenic
AATTCACTTGAAATAGTTTG+GGG 0.644524 1_3:+33503579 Msa0114990:five_prime_UTR
TGAATGTGTTGTCAAACAAG+TGG 0.654131 1_3:+33504510 Msa0114990:CDS
GATGCTACGCAGTGCAATGG+TGG 0.655147 1_3:-33504346 None:intergenic
CGAACGAGTTTATTAAAGTG+GGG 0.657987 1_3:-33503967 None:intergenic
GTCAAGGACAAGGAATGAGG+AGG 0.658566 1_3:-33504074 None:intergenic
GAAGATGCTACGCAGTGCAA+TGG 0.668125 1_3:-33504349 None:intergenic
ATGTTGCTTGATGAGGATGA+AGG 0.680073 1_3:+33504721 Msa0114990:CDS
TTTGATGAAGATGCTACACA+CGG 0.680690 1_3:-33504274 None:intergenic
GGTAGAAACAACACAAATCG+TGG 0.681327 1_3:+33505720 Msa0114990:three_prime_UTR
ACACACGGTAATGATGGTGG+TGG 0.696914 1_3:-33504259 None:intergenic
GTGGAATGATGCATTGTGTG+AGG 0.727329 1_3:+33504645 Msa0114990:CDS
GCTACACACGGTAATGATGG+TGG 0.734605 1_3:-33504262 None:intergenic
TTGGTGAGAAGTGATGACAG+AGG 0.745687 1_3:-33504209 None:intergenic
TCTACCGCAGAAACAAACAC+AGG 0.748256 1_3:-33505703 None:intergenic
AAATGGACATCTTCTCATGG+TGG 0.767144 1_3:+33505442 Msa0114990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTCATTATTTTATTGTAT+TGG + chr1_3:33503532-33503551 Msa0114990:five_prime_UTR 15.0%
!!! TTATTTTATTGTATTGGAAT+TGG + chr1_3:33503538-33503557 Msa0114990:five_prime_UTR 15.0%
!! TAAAGGTTCATATATATAAA+TGG - chr1_3:33503738-33503757 None:intergenic 15.0%
!! TGAAAATATATAAAAAGTGA+AGG - chr1_3:33503863-33503882 None:intergenic 15.0%
!!! TTTTTATATATTTTCAGTGA+AGG + chr1_3:33503867-33503886 Msa0114990:five_prime_UTR 15.0%
!!! ATTTTTAAATTGTGTGTTTT+TGG + chr1_3:33505073-33505092 Msa0114990:intron 15.0%
!! AATTAACAAAGTAAAACTAA+AGG - chr1_3:33505129-33505148 None:intergenic 15.0%
!! TACAACAATTTCTTAATTAA+GGG - chr1_3:33505341-33505360 None:intergenic 15.0%
!! TTACAACAATTTCTTAATTA+AGG - chr1_3:33505342-33505361 None:intergenic 15.0%
!!! TAGTCATTATTTTATTGTAT+TGG + chr1_3:33503532-33503551 Msa0114990:five_prime_UTR 15.0%
!!! TTATTTTATTGTATTGGAAT+TGG + chr1_3:33503538-33503557 Msa0114990:five_prime_UTR 15.0%
!! TAAAGGTTCATATATATAAA+TGG - chr1_3:33503738-33503757 None:intergenic 15.0%
!! TGAAAATATATAAAAAGTGA+AGG - chr1_3:33503863-33503882 None:intergenic 15.0%
!!! TTTTTATATATTTTCAGTGA+AGG + chr1_3:33503867-33503886 Msa0114990:five_prime_UTR 15.0%
!!! ATTTTTAAATTGTGTGTTTT+TGG + chr1_3:33505073-33505092 Msa0114990:intron 15.0%
!! AATTAACAAAGTAAAACTAA+AGG - chr1_3:33505129-33505148 None:intergenic 15.0%
!! TACAACAATTTCTTAATTAA+GGG - chr1_3:33505341-33505360 None:intergenic 15.0%
!! TTACAACAATTTCTTAATTA+AGG - chr1_3:33505342-33505361 None:intergenic 15.0%
!!! ATTCAAATCTTCTCTATTTT+CGG + chr1_3:33505002-33505021 Msa0114990:intron 20.0%
!!! TGTTTAACGTTTTGATTAAA+AGG + chr1_3:33505267-33505286 Msa0114990:intron 20.0%
!!! ATTCAAATCTTCTCTATTTT+CGG + chr1_3:33505002-33505021 Msa0114990:intron 20.0%
!!! TGTTTAACGTTTTGATTAAA+AGG + chr1_3:33505267-33505286 Msa0114990:intron 20.0%
! ACAATTCACTTGAAATAGTT+TGG + chr1_3:33503577-33503596 Msa0114990:five_prime_UTR 25.0%
! CAATTCACTTGAAATAGTTT+GGG + chr1_3:33503578-33503597 Msa0114990:five_prime_UTR 25.0%
! AATTCACTTGAAATAGTTTG+GGG + chr1_3:33503579-33503598 Msa0114990:five_prime_UTR 25.0%
!! TAAGTTTTTGTGTGTTTATG+TGG - chr1_3:33504033-33504052 None:intergenic 25.0%
! ATTTCAGAACAATCCTTAAA+CGG - chr1_3:33504703-33504722 None:intergenic 25.0%
! AAAACAATCTATGACAAGAA+GGG - chr1_3:33504774-33504793 None:intergenic 25.0%
!!! TATCATTTTTTGTGTCACTT+TGG + chr1_3:33505102-33505121 Msa0114990:intron 25.0%
! TTAATCAAAACGTTAAACAG+TGG - chr1_3:33505266-33505285 None:intergenic 25.0%
!!! TAACGTTTTGATTAAAAGGA+AGG + chr1_3:33505271-33505290 Msa0114990:intron 25.0%
!! TACCATGATTTAACTTATGA+TGG - chr1_3:33505298-33505317 None:intergenic 25.0%
! AAATTAGATAGATGCAAGAA+GGG + chr1_3:33505474-33505493 Msa0114990:exon 25.0%
! GGGATGAAATATATTTATTG+TGG + chr1_3:33505494-33505513 Msa0114990:three_prime_UTR 25.0%
!! TTTTGATATATCCATGGATA+GGG + chr1_3:33505520-33505539 Msa0114990:three_prime_UTR 25.0%
! ACAATTCACTTGAAATAGTT+TGG + chr1_3:33503577-33503596 Msa0114990:five_prime_UTR 25.0%
! CAATTCACTTGAAATAGTTT+GGG + chr1_3:33503578-33503597 Msa0114990:five_prime_UTR 25.0%
! AATTCACTTGAAATAGTTTG+GGG + chr1_3:33503579-33503598 Msa0114990:five_prime_UTR 25.0%
!! TAAGTTTTTGTGTGTTTATG+TGG - chr1_3:33504033-33504052 None:intergenic 25.0%
! ATTTCAGAACAATCCTTAAA+CGG - chr1_3:33504703-33504722 None:intergenic 25.0%
! AAAACAATCTATGACAAGAA+GGG - chr1_3:33504774-33504793 None:intergenic 25.0%
!!! TATCATTTTTTGTGTCACTT+TGG + chr1_3:33505102-33505121 Msa0114990:intron 25.0%
! TTAATCAAAACGTTAAACAG+TGG - chr1_3:33505266-33505285 None:intergenic 25.0%
!!! TAACGTTTTGATTAAAAGGA+AGG + chr1_3:33505271-33505290 Msa0114990:intron 25.0%
!! TACCATGATTTAACTTATGA+TGG - chr1_3:33505298-33505317 None:intergenic 25.0%
! AAATTAGATAGATGCAAGAA+GGG + chr1_3:33505474-33505493 Msa0114990:exon 25.0%
! GGGATGAAATATATTTATTG+TGG + chr1_3:33505494-33505513 Msa0114990:three_prime_UTR 25.0%
!! TTTTGATATATCCATGGATA+GGG + chr1_3:33505520-33505539 Msa0114990:three_prime_UTR 25.0%
TTGACATTGACGCAATATTT+AGG + chr1_3:33503625-33503644 Msa0114990:five_prime_UTR 30.0%
TGACATTGACGCAATATTTA+GGG + chr1_3:33503626-33503645 Msa0114990:five_prime_UTR 30.0%
! AACAAAGAAGCATAGCATAA+AGG - chr1_3:33503755-33503774 None:intergenic 30.0%
TTTATGCTATGCTTCTTTGT+TGG + chr1_3:33503754-33503773 Msa0114990:five_prime_UTR 30.0%
AGACTTCAAAAAGAGTAAAG+AGG - chr1_3:33503910-33503929 None:intergenic 30.0%
ACGAACGAGTTTATTAAAGT+GGG - chr1_3:33503971-33503990 None:intergenic 30.0%
AACGAACGAGTTTATTAAAG+TGG - chr1_3:33503972-33503991 None:intergenic 30.0%
ACAGTTTCAAGAAACCTTAT+TGG + chr1_3:33504186-33504205 Msa0114990:CDS 30.0%
CACATTCAGAACAAAATGAA+TGG - chr1_3:33504498-33504517 None:intergenic 30.0%
!! ACACATTTGTTATGTTGTCT+TGG - chr1_3:33504546-33504565 None:intergenic 30.0%
! TTCCAAAAGAGTTGATTGAT+AGG + chr1_3:33504623-33504642 Msa0114990:CDS 30.0%
TTTCAGAACAATCCTTAAAC+GGG - chr1_3:33504702-33504721 None:intergenic 30.0%
CAAAACAATCTATGACAAGA+AGG - chr1_3:33504775-33504794 None:intergenic 30.0%
CTAATAAGAAAAGGTGGAAA+AGG + chr1_3:33504899-33504918 Msa0114990:CDS 30.0%
CAGGTTCTATGTTGAAAAAA+GGG + chr1_3:33504933-33504952 Msa0114990:CDS 30.0%
TTCTATGTTGAAAAAAGGGA+TGG + chr1_3:33504937-33504956 Msa0114990:CDS 30.0%
TAAGTATGAGATGATTGTCT+TGG + chr1_3:33505155-33505174 Msa0114990:intron 30.0%
AAATGAACGATATTGATCTC+TGG - chr1_3:33505233-33505252 None:intergenic 30.0%
GACCATCATAAGTTAAATCA+TGG + chr1_3:33505293-33505312 Msa0114990:intron 30.0%
TTCTTAATTAAGGGTCACTT+TGG - chr1_3:33505332-33505351 None:intergenic 30.0%
AATCAGTGAACAACTGAATA+AGG + chr1_3:33505368-33505387 Msa0114990:intron 30.0%
ATCAGTGAACAACTGAATAA+GGG + chr1_3:33505369-33505388 Msa0114990:intron 30.0%
GAAATTAGATAGATGCAAGA+AGG + chr1_3:33505473-33505492 Msa0114990:exon 30.0%
!!! TGGTTGTTTTGATATATCCA+TGG + chr1_3:33505514-33505533 Msa0114990:three_prime_UTR 30.0%
!! GTTTTGATATATCCATGGAT+AGG + chr1_3:33505519-33505538 Msa0114990:three_prime_UTR 30.0%
TTTGATATATCCATGGATAG+GGG + chr1_3:33505521-33505540 Msa0114990:three_prime_UTR 30.0%
AATCTGCTCTTTAAACAGTA+AGG - chr1_3:33505552-33505571 None:intergenic 30.0%
ATAGCAAGTACACTTTCAAA+AGG - chr1_3:33505647-33505666 None:intergenic 30.0%
TTGACATTGACGCAATATTT+AGG + chr1_3:33503625-33503644 Msa0114990:five_prime_UTR 30.0%
TGACATTGACGCAATATTTA+GGG + chr1_3:33503626-33503645 Msa0114990:five_prime_UTR 30.0%
! AACAAAGAAGCATAGCATAA+AGG - chr1_3:33503755-33503774 None:intergenic 30.0%
TTTATGCTATGCTTCTTTGT+TGG + chr1_3:33503754-33503773 Msa0114990:five_prime_UTR 30.0%
AGACTTCAAAAAGAGTAAAG+AGG - chr1_3:33503910-33503929 None:intergenic 30.0%
ACGAACGAGTTTATTAAAGT+GGG - chr1_3:33503971-33503990 None:intergenic 30.0%
AACGAACGAGTTTATTAAAG+TGG - chr1_3:33503972-33503991 None:intergenic 30.0%
ACAGTTTCAAGAAACCTTAT+TGG + chr1_3:33504186-33504205 Msa0114990:CDS 30.0%
CACATTCAGAACAAAATGAA+TGG - chr1_3:33504498-33504517 None:intergenic 30.0%
!! ACACATTTGTTATGTTGTCT+TGG - chr1_3:33504546-33504565 None:intergenic 30.0%
! TTCCAAAAGAGTTGATTGAT+AGG + chr1_3:33504623-33504642 Msa0114990:CDS 30.0%
TTTCAGAACAATCCTTAAAC+GGG - chr1_3:33504702-33504721 None:intergenic 30.0%
CAAAACAATCTATGACAAGA+AGG - chr1_3:33504775-33504794 None:intergenic 30.0%
CTAATAAGAAAAGGTGGAAA+AGG + chr1_3:33504899-33504918 Msa0114990:CDS 30.0%
CAGGTTCTATGTTGAAAAAA+GGG + chr1_3:33504933-33504952 Msa0114990:CDS 30.0%
TTCTATGTTGAAAAAAGGGA+TGG + chr1_3:33504937-33504956 Msa0114990:CDS 30.0%
TAAGTATGAGATGATTGTCT+TGG + chr1_3:33505155-33505174 Msa0114990:intron 30.0%
AAATGAACGATATTGATCTC+TGG - chr1_3:33505233-33505252 None:intergenic 30.0%
GACCATCATAAGTTAAATCA+TGG + chr1_3:33505293-33505312 Msa0114990:intron 30.0%
TTCTTAATTAAGGGTCACTT+TGG - chr1_3:33505332-33505351 None:intergenic 30.0%
AATCAGTGAACAACTGAATA+AGG + chr1_3:33505368-33505387 Msa0114990:intron 30.0%
ATCAGTGAACAACTGAATAA+GGG + chr1_3:33505369-33505388 Msa0114990:intron 30.0%
GAAATTAGATAGATGCAAGA+AGG + chr1_3:33505473-33505492 Msa0114990:exon 30.0%
!!! TGGTTGTTTTGATATATCCA+TGG + chr1_3:33505514-33505533 Msa0114990:three_prime_UTR 30.0%
!! GTTTTGATATATCCATGGAT+AGG + chr1_3:33505519-33505538 Msa0114990:three_prime_UTR 30.0%
TTTGATATATCCATGGATAG+GGG + chr1_3:33505521-33505540 Msa0114990:three_prime_UTR 30.0%
AATCTGCTCTTTAAACAGTA+AGG - chr1_3:33505552-33505571 None:intergenic 30.0%
ATAGCAAGTACACTTTCAAA+AGG - chr1_3:33505647-33505666 None:intergenic 30.0%
TCTTCTTCCTCAAAATCTCT+CGG + chr1_3:33503672-33503691 Msa0114990:five_prime_UTR 35.0%
CGAACGAGTTTATTAAAGTG+GGG - chr1_3:33503970-33503989 None:intergenic 35.0%
!!! TGTTCTTGTTTTGGGGAAAT+GGG - chr1_3:33504000-33504019 None:intergenic 35.0%
!!! TTGTTCTTGTTTTGGGGAAA+TGG - chr1_3:33504001-33504020 None:intergenic 35.0%
TTTCCCCAAAACAAGAACAA+TGG + chr1_3:33504001-33504020 Msa0114990:five_prime_UTR 35.0%
!!! ACTCCATTGTTCTTGTTTTG+GGG - chr1_3:33504007-33504026 None:intergenic 35.0%
!!! CACTCCATTGTTCTTGTTTT+GGG - chr1_3:33504008-33504027 None:intergenic 35.0%
!! TCACTCCATTGTTCTTGTTT+TGG - chr1_3:33504009-33504028 None:intergenic 35.0%
CACACAAAAACTTACACCAA+TGG + chr1_3:33504039-33504058 Msa0114990:exon 35.0%
TTTGATGAAGATGCTACACA+CGG - chr1_3:33504277-33504296 None:intergenic 35.0%
CAAATCTCGCAAATGATGAT+CGG - chr1_3:33504427-33504446 None:intergenic 35.0%
AGATTTGTGCGGAAACAAAA+AGG + chr1_3:33504440-33504459 Msa0114990:CDS 35.0%
TGAATGTGTTGTCAAACAAG+TGG + chr1_3:33504510-33504529 Msa0114990:CDS 35.0%
ATAACAAATGTGTCTTGTCC+TGG + chr1_3:33504553-33504572 Msa0114990:CDS 35.0%
! CACCTATCAATCAACTCTTT+TGG - chr1_3:33504628-33504647 None:intergenic 35.0%
! CAAAAGAGTTGATTGATAGG+TGG + chr1_3:33504626-33504645 Msa0114990:CDS 35.0%
TTAAACGGGCAATAGAACTT+AGG - chr1_3:33504688-33504707 None:intergenic 35.0%
TAAGTTCTATTGCCCGTTTA+AGG + chr1_3:33504687-33504706 Msa0114990:CDS 35.0%
!! TTCTGAAATGTTGCTTGATG+AGG + chr1_3:33504714-33504733 Msa0114990:CDS 35.0%
ATGAAGGAAGAGAAGATGTT+AGG + chr1_3:33504737-33504756 Msa0114990:CDS 35.0%
TGAAGGAAGAGAAGATGTTA+GGG + chr1_3:33504738-33504757 Msa0114990:CDS 35.0%
GGAGTTTCAAACAATGAATG+TGG + chr1_3:33504837-33504856 Msa0114990:CDS 35.0%
ACAATGAATGTGGATGAAAG+AGG + chr1_3:33504847-33504866 Msa0114990:CDS 35.0%
GCAGGTTCTATGTTGAAAAA+AGG + chr1_3:33504932-33504951 Msa0114990:CDS 35.0%
TGATTGTCTTGGCATTCATT+TGG + chr1_3:33505166-33505185 Msa0114990:intron 35.0%
!! TTTGAGTTTTGCTATGCTTG+CGG + chr1_3:33505415-33505434 Msa0114990:CDS 35.0%
! TTTTGTCTAACGCTCCAAAT+TGG + chr1_3:33505743-33505762 Msa0114990:three_prime_UTR 35.0%
AAAAAGCTGAAGCTCCAATT+TGG - chr1_3:33505760-33505779 None:intergenic 35.0%
!!! AGCTTCAGCTTTTTTGCATT+GGG + chr1_3:33505766-33505785 Msa0114990:three_prime_UTR 35.0%
GTAAGATCAATAGCGTGTTT+GGG - chr1_3:33505830-33505849 None:intergenic 35.0%
AGTAAGATCAATAGCGTGTT+TGG - chr1_3:33505831-33505850 None:intergenic 35.0%
TCTTCTTCCTCAAAATCTCT+CGG + chr1_3:33503672-33503691 Msa0114990:five_prime_UTR 35.0%
CGAACGAGTTTATTAAAGTG+GGG - chr1_3:33503970-33503989 None:intergenic 35.0%
!!! TGTTCTTGTTTTGGGGAAAT+GGG - chr1_3:33504000-33504019 None:intergenic 35.0%
!!! TTGTTCTTGTTTTGGGGAAA+TGG - chr1_3:33504001-33504020 None:intergenic 35.0%
TTTCCCCAAAACAAGAACAA+TGG + chr1_3:33504001-33504020 Msa0114990:five_prime_UTR 35.0%
!!! ACTCCATTGTTCTTGTTTTG+GGG - chr1_3:33504007-33504026 None:intergenic 35.0%
!!! CACTCCATTGTTCTTGTTTT+GGG - chr1_3:33504008-33504027 None:intergenic 35.0%
!! TCACTCCATTGTTCTTGTTT+TGG - chr1_3:33504009-33504028 None:intergenic 35.0%
CACACAAAAACTTACACCAA+TGG + chr1_3:33504039-33504058 Msa0114990:exon 35.0%
TTTGATGAAGATGCTACACA+CGG - chr1_3:33504277-33504296 None:intergenic 35.0%
CAAATCTCGCAAATGATGAT+CGG - chr1_3:33504427-33504446 None:intergenic 35.0%
AGATTTGTGCGGAAACAAAA+AGG + chr1_3:33504440-33504459 Msa0114990:CDS 35.0%
TGAATGTGTTGTCAAACAAG+TGG + chr1_3:33504510-33504529 Msa0114990:CDS 35.0%
ATAACAAATGTGTCTTGTCC+TGG + chr1_3:33504553-33504572 Msa0114990:CDS 35.0%
! CACCTATCAATCAACTCTTT+TGG - chr1_3:33504628-33504647 None:intergenic 35.0%
! CAAAAGAGTTGATTGATAGG+TGG + chr1_3:33504626-33504645 Msa0114990:CDS 35.0%
TTAAACGGGCAATAGAACTT+AGG - chr1_3:33504688-33504707 None:intergenic 35.0%
TAAGTTCTATTGCCCGTTTA+AGG + chr1_3:33504687-33504706 Msa0114990:CDS 35.0%
!! TTCTGAAATGTTGCTTGATG+AGG + chr1_3:33504714-33504733 Msa0114990:CDS 35.0%
ATGAAGGAAGAGAAGATGTT+AGG + chr1_3:33504737-33504756 Msa0114990:CDS 35.0%
TGAAGGAAGAGAAGATGTTA+GGG + chr1_3:33504738-33504757 Msa0114990:CDS 35.0%
GGAGTTTCAAACAATGAATG+TGG + chr1_3:33504837-33504856 Msa0114990:CDS 35.0%
ACAATGAATGTGGATGAAAG+AGG + chr1_3:33504847-33504866 Msa0114990:CDS 35.0%
GCAGGTTCTATGTTGAAAAA+AGG + chr1_3:33504932-33504951 Msa0114990:CDS 35.0%
TGATTGTCTTGGCATTCATT+TGG + chr1_3:33505166-33505185 Msa0114990:intron 35.0%
!! TTTGAGTTTTGCTATGCTTG+CGG + chr1_3:33505415-33505434 Msa0114990:CDS 35.0%
! TTTTGTCTAACGCTCCAAAT+TGG + chr1_3:33505743-33505762 Msa0114990:three_prime_UTR 35.0%
AAAAAGCTGAAGCTCCAATT+TGG - chr1_3:33505760-33505779 None:intergenic 35.0%
!!! AGCTTCAGCTTTTTTGCATT+GGG + chr1_3:33505766-33505785 Msa0114990:three_prime_UTR 35.0%
GTAAGATCAATAGCGTGTTT+GGG - chr1_3:33505830-33505849 None:intergenic 35.0%
AGTAAGATCAATAGCGTGTT+TGG - chr1_3:33505831-33505850 None:intergenic 35.0%
CTTGAAATAGTTTGGGGAAG+TGG + chr1_3:33503585-33503604 Msa0114990:five_prime_UTR 40.0%
GGAAGAAGAAAGTGAAAGAG+AGG - chr1_3:33503661-33503680 None:intergenic 40.0%
!!! TTCTTGTTTTGGGGAAATGG+GGG - chr1_3:33503998-33504017 None:intergenic 40.0%
!!! GTTCTTGTTTTGGGGAAATG+GGG - chr1_3:33503999-33504018 None:intergenic 40.0%
GGAGAAGTAAAAGTCGTCTA+CGG - chr1_3:33504101-33504120 None:intergenic 40.0%
AATTTCATGGTCGGAGACAA+CGG - chr1_3:33504122-33504141 None:intergenic 40.0%
GTTAGGGTCAATTTCATGGT+CGG - chr1_3:33504131-33504150 None:intergenic 40.0%
! AGGAAAAGGATGAAGGGTTT+TGG - chr1_3:33504231-33504250 None:intergenic 40.0%
CCAAGAAGGAAAAGGATGAA+GGG - chr1_3:33504237-33504256 None:intergenic 40.0%
TCATCGAAGGCTATTGATGT+TGG + chr1_3:33504370-33504389 Msa0114990:CDS 40.0%
CATCATTTGCGAGATTTGTG+CGG + chr1_3:33504429-33504448 Msa0114990:CDS 40.0%
TGTTAGAGCTTGAATCTTGC+AGG + chr1_3:33504593-33504612 Msa0114990:CDS 40.0%
! ATGTTGCTTGATGAGGATGA+AGG + chr1_3:33504721-33504740 Msa0114990:CDS 40.0%
TGAATGTGGATGAAAGAGGA+AGG + chr1_3:33504851-33504870 Msa0114990:CDS 40.0%
GAATGTGGATGAAAGAGGAA+GGG + chr1_3:33504852-33504871 Msa0114990:CDS 40.0%
AGCTGGCTAATAAGAAAAGG+TGG + chr1_3:33504893-33504912 Msa0114990:CDS 40.0%
TCAACATAGAACCTGCATCT+TGG - chr1_3:33504928-33504947 None:intergenic 40.0%
GATGTTTGCATATTACGTGC+AGG + chr1_3:33504959-33504978 Msa0114990:CDS 40.0%
GAAACCAATCCAAATAGCTC+CGG - chr1_3:33505192-33505211 None:intergenic 40.0%
TAAGGGTGATGTTTGTTTGC+AGG + chr1_3:33505386-33505405 Msa0114990:intron 40.0%
GCAAAATGGACATCTTCTCA+TGG + chr1_3:33505439-33505458 Msa0114990:CDS 40.0%
AAATGGACATCTTCTCATGG+TGG + chr1_3:33505442-33505461 Msa0114990:CDS 40.0%
GGTAGAAACAACACAAATCG+TGG + chr1_3:33505720-33505739 Msa0114990:three_prime_UTR 40.0%
!!! GAGCTTCAGCTTTTTTGCAT+TGG + chr1_3:33505765-33505784 Msa0114990:three_prime_UTR 40.0%
CTTGAAATAGTTTGGGGAAG+TGG + chr1_3:33503585-33503604 Msa0114990:five_prime_UTR 40.0%
GGAAGAAGAAAGTGAAAGAG+AGG - chr1_3:33503661-33503680 None:intergenic 40.0%
!!! TTCTTGTTTTGGGGAAATGG+GGG - chr1_3:33503998-33504017 None:intergenic 40.0%
!!! GTTCTTGTTTTGGGGAAATG+GGG - chr1_3:33503999-33504018 None:intergenic 40.0%
GGAGAAGTAAAAGTCGTCTA+CGG - chr1_3:33504101-33504120 None:intergenic 40.0%
AATTTCATGGTCGGAGACAA+CGG - chr1_3:33504122-33504141 None:intergenic 40.0%
GTTAGGGTCAATTTCATGGT+CGG - chr1_3:33504131-33504150 None:intergenic 40.0%
! AGGAAAAGGATGAAGGGTTT+TGG - chr1_3:33504231-33504250 None:intergenic 40.0%
CCAAGAAGGAAAAGGATGAA+GGG - chr1_3:33504237-33504256 None:intergenic 40.0%
TCATCGAAGGCTATTGATGT+TGG + chr1_3:33504370-33504389 Msa0114990:CDS 40.0%
CATCATTTGCGAGATTTGTG+CGG + chr1_3:33504429-33504448 Msa0114990:CDS 40.0%
TGTTAGAGCTTGAATCTTGC+AGG + chr1_3:33504593-33504612 Msa0114990:CDS 40.0%
! ATGTTGCTTGATGAGGATGA+AGG + chr1_3:33504721-33504740 Msa0114990:CDS 40.0%
TGAATGTGGATGAAAGAGGA+AGG + chr1_3:33504851-33504870 Msa0114990:CDS 40.0%
GAATGTGGATGAAAGAGGAA+GGG + chr1_3:33504852-33504871 Msa0114990:CDS 40.0%
AGCTGGCTAATAAGAAAAGG+TGG + chr1_3:33504893-33504912 Msa0114990:CDS 40.0%
TCAACATAGAACCTGCATCT+TGG - chr1_3:33504928-33504947 None:intergenic 40.0%
GATGTTTGCATATTACGTGC+AGG + chr1_3:33504959-33504978 Msa0114990:CDS 40.0%
GAAACCAATCCAAATAGCTC+CGG - chr1_3:33505192-33505211 None:intergenic 40.0%
TAAGGGTGATGTTTGTTTGC+AGG + chr1_3:33505386-33505405 Msa0114990:intron 40.0%
GCAAAATGGACATCTTCTCA+TGG + chr1_3:33505439-33505458 Msa0114990:CDS 40.0%
AAATGGACATCTTCTCATGG+TGG + chr1_3:33505442-33505461 Msa0114990:CDS 40.0%
GGTAGAAACAACACAAATCG+TGG + chr1_3:33505720-33505739 Msa0114990:three_prime_UTR 40.0%
!!! GAGCTTCAGCTTTTTTGCAT+TGG + chr1_3:33505765-33505784 Msa0114990:three_prime_UTR 40.0%
! ACGATGACCGAGAGATTTTG+AGG - chr1_3:33503682-33503701 None:intergenic 45.0%
TCGGTCATCGTCATCATCAT+CGG + chr1_3:33503691-33503710 Msa0114990:five_prime_UTR 45.0%
TAAAGTGGGGTGAGTGTGAA+AGG - chr1_3:33503957-33503976 None:intergenic 45.0%
! AAAAGTCGTCTACGGTGTCA+AGG - chr1_3:33504093-33504112 None:intergenic 45.0%
GGACGTTAGGGTCAATTTCA+TGG - chr1_3:33504135-33504154 None:intergenic 45.0%
TGCTTCAGCGTACTTGTCAT+CGG - chr1_3:33504164-33504183 None:intergenic 45.0%
AGTGATGACAGAGGCCAATA+AGG - chr1_3:33504203-33504222 None:intergenic 45.0%
TTGGTGAGAAGTGATGACAG+AGG - chr1_3:33504212-33504231 None:intergenic 45.0%
! CCCTTCATCCTTTTCCTTCT+TGG + chr1_3:33504234-33504253 Msa0114990:CDS 45.0%
GCCAAGAAGGAAAAGGATGA+AGG - chr1_3:33504238-33504257 None:intergenic 45.0%
GATGCTACACACGGTAATGA+TGG - chr1_3:33504268-33504287 None:intergenic 45.0%
TGCGGAAACAAAAAGGACTG+AGG + chr1_3:33504447-33504466 Msa0114990:CDS 45.0%
! TTGTCCTGGTTTGAACTGCA+AGG + chr1_3:33504567-33504586 Msa0114990:CDS 45.0%
! TGTCCTGGTTTGAACTGCAA+GGG + chr1_3:33504568-33504587 Msa0114990:CDS 45.0%
GTGGAATGATGCATTGTGTG+AGG + chr1_3:33504645-33504664 Msa0114990:CDS 45.0%
AAGGGAAGATCTCCTTGTGA+GGG + chr1_3:33504870-33504889 Msa0114990:CDS 45.0%
GGGAGCTGGCTAATAAGAAA+AGG + chr1_3:33504890-33504909 Msa0114990:CDS 45.0%
TGTCTTGGCATTCATTTGGC+CGG + chr1_3:33505170-33505189 Msa0114990:intron 45.0%
TTCATTTGGCCGGAGCTATT+TGG + chr1_3:33505180-33505199 Msa0114990:intron 45.0%
TAAGGAACTTCCCCTATCCA+TGG - chr1_3:33505534-33505553 None:intergenic 45.0%
ACCATGAATCATGCACGTCT+TGG + chr1_3:33505680-33505699 Msa0114990:three_prime_UTR 45.0%
!! TTGGCCTGTGTTTGTTTCTG+CGG + chr1_3:33505699-33505718 Msa0114990:three_prime_UTR 45.0%
TCTACCGCAGAAACAAACAC+AGG - chr1_3:33505706-33505725 None:intergenic 45.0%
! CATTGGGAAGCGTGAAAACA+TGG + chr1_3:33505782-33505801 Msa0114990:three_prime_UTR 45.0%
! ACGATGACCGAGAGATTTTG+AGG - chr1_3:33503682-33503701 None:intergenic 45.0%
TCGGTCATCGTCATCATCAT+CGG + chr1_3:33503691-33503710 Msa0114990:five_prime_UTR 45.0%
TAAAGTGGGGTGAGTGTGAA+AGG - chr1_3:33503957-33503976 None:intergenic 45.0%
! AAAAGTCGTCTACGGTGTCA+AGG - chr1_3:33504093-33504112 None:intergenic 45.0%
GGACGTTAGGGTCAATTTCA+TGG - chr1_3:33504135-33504154 None:intergenic 45.0%
TGCTTCAGCGTACTTGTCAT+CGG - chr1_3:33504164-33504183 None:intergenic 45.0%
AGTGATGACAGAGGCCAATA+AGG - chr1_3:33504203-33504222 None:intergenic 45.0%
TTGGTGAGAAGTGATGACAG+AGG - chr1_3:33504212-33504231 None:intergenic 45.0%
! CCCTTCATCCTTTTCCTTCT+TGG + chr1_3:33504234-33504253 Msa0114990:CDS 45.0%
GCCAAGAAGGAAAAGGATGA+AGG - chr1_3:33504238-33504257 None:intergenic 45.0%
GATGCTACACACGGTAATGA+TGG - chr1_3:33504268-33504287 None:intergenic 45.0%
TGCGGAAACAAAAAGGACTG+AGG + chr1_3:33504447-33504466 Msa0114990:CDS 45.0%
! TTGTCCTGGTTTGAACTGCA+AGG + chr1_3:33504567-33504586 Msa0114990:CDS 45.0%
! TGTCCTGGTTTGAACTGCAA+GGG + chr1_3:33504568-33504587 Msa0114990:CDS 45.0%
GTGGAATGATGCATTGTGTG+AGG + chr1_3:33504645-33504664 Msa0114990:CDS 45.0%
AAGGGAAGATCTCCTTGTGA+GGG + chr1_3:33504870-33504889 Msa0114990:CDS 45.0%
GGGAGCTGGCTAATAAGAAA+AGG + chr1_3:33504890-33504909 Msa0114990:CDS 45.0%
TGTCTTGGCATTCATTTGGC+CGG + chr1_3:33505170-33505189 Msa0114990:intron 45.0%
TTCATTTGGCCGGAGCTATT+TGG + chr1_3:33505180-33505199 Msa0114990:intron 45.0%
TAAGGAACTTCCCCTATCCA+TGG - chr1_3:33505534-33505553 None:intergenic 45.0%
ACCATGAATCATGCACGTCT+TGG + chr1_3:33505680-33505699 Msa0114990:three_prime_UTR 45.0%
!! TTGGCCTGTGTTTGTTTCTG+CGG + chr1_3:33505699-33505718 Msa0114990:three_prime_UTR 45.0%
TCTACCGCAGAAACAAACAC+AGG - chr1_3:33505706-33505725 None:intergenic 45.0%
! CATTGGGAAGCGTGAAAACA+TGG + chr1_3:33505782-33505801 Msa0114990:three_prime_UTR 45.0%
GGGTGAGTGTGAAAGGTTAG+TGG - chr1_3:33503950-33503969 None:intergenic 50.0%
!!! TTGTTTTGGGGAAATGGGGG+AGG - chr1_3:33503995-33504014 None:intergenic 50.0%
AGGACAAGGAATGAGGAGGA+TGG - chr1_3:33504073-33504092 None:intergenic 50.0%
GTCAAGGACAAGGAATGAGG+AGG - chr1_3:33504077-33504096 None:intergenic 50.0%
GGTGTCAAGGACAAGGAATG+AGG - chr1_3:33504080-33504099 None:intergenic 50.0%
CGTACTTGTCATCGGAGACA+GGG - chr1_3:33504156-33504175 None:intergenic 50.0%
! TGGTGGTGCCAAGAAGGAAA+AGG - chr1_3:33504245-33504264 None:intergenic 50.0%
!! ACACACGGTAATGATGGTGG+TGG - chr1_3:33504262-33504281 None:intergenic 50.0%
GCTACACACGGTAATGATGG+TGG - chr1_3:33504265-33504284 None:intergenic 50.0%
GAAGATGCTACGCAGTGCAA+TGG - chr1_3:33504352-33504371 None:intergenic 50.0%
CTGCGTAGCATCTTCATCGA+AGG + chr1_3:33504357-33504376 Msa0114990:CDS 50.0%
ACACCCTTGCAGTTCAAACC+AGG - chr1_3:33504574-33504593 None:intergenic 50.0%
GTGCAAGCTGTCATGTCACT+TGG + chr1_3:33504794-33504813 Msa0114990:CDS 50.0%
! TGTCATGTCACTTGGCATCC+TGG + chr1_3:33504802-33504821 Msa0114990:CDS 50.0%
! GTCATGTCACTTGGCATCCT+GGG + chr1_3:33504803-33504822 Msa0114990:CDS 50.0%
! TCATGTCACTTGGCATCCTG+GGG + chr1_3:33504804-33504823 Msa0114990:CDS 50.0%
GAAGGGAAGATCTCCTTGTG+AGG + chr1_3:33504869-33504888 Msa0114990:CDS 50.0%
TATTAGCCAGCTCCCTCACA+AGG - chr1_3:33504885-33504904 None:intergenic 50.0%
!! GGAAAAGGTGTCCAAGATGC+AGG + chr1_3:33504914-33504933 Msa0114990:CDS 50.0%
TTGGCCGGAGCTATTTGGAT+TGG + chr1_3:33505185-33505204 Msa0114990:intron 50.0%
GCTATGCTTGCGGTGCAAAA+TGG + chr1_3:33505425-33505444 Msa0114990:CDS 50.0%
GCCAAGACGTGCATGATTCA+TGG - chr1_3:33505684-33505703 None:intergenic 50.0%
GGGTGAGTGTGAAAGGTTAG+TGG - chr1_3:33503950-33503969 None:intergenic 50.0%
!!! TTGTTTTGGGGAAATGGGGG+AGG - chr1_3:33503995-33504014 None:intergenic 50.0%
AGGACAAGGAATGAGGAGGA+TGG - chr1_3:33504073-33504092 None:intergenic 50.0%
GTCAAGGACAAGGAATGAGG+AGG - chr1_3:33504077-33504096 None:intergenic 50.0%
GGTGTCAAGGACAAGGAATG+AGG - chr1_3:33504080-33504099 None:intergenic 50.0%
CGTACTTGTCATCGGAGACA+GGG - chr1_3:33504156-33504175 None:intergenic 50.0%
! TGGTGGTGCCAAGAAGGAAA+AGG - chr1_3:33504245-33504264 None:intergenic 50.0%
!! ACACACGGTAATGATGGTGG+TGG - chr1_3:33504262-33504281 None:intergenic 50.0%
GCTACACACGGTAATGATGG+TGG - chr1_3:33504265-33504284 None:intergenic 50.0%
GAAGATGCTACGCAGTGCAA+TGG - chr1_3:33504352-33504371 None:intergenic 50.0%
CTGCGTAGCATCTTCATCGA+AGG + chr1_3:33504357-33504376 Msa0114990:CDS 50.0%
ACACCCTTGCAGTTCAAACC+AGG - chr1_3:33504574-33504593 None:intergenic 50.0%
GTGCAAGCTGTCATGTCACT+TGG + chr1_3:33504794-33504813 Msa0114990:CDS 50.0%
! TGTCATGTCACTTGGCATCC+TGG + chr1_3:33504802-33504821 Msa0114990:CDS 50.0%
! GTCATGTCACTTGGCATCCT+GGG + chr1_3:33504803-33504822 Msa0114990:CDS 50.0%
! TCATGTCACTTGGCATCCTG+GGG + chr1_3:33504804-33504823 Msa0114990:CDS 50.0%
GAAGGGAAGATCTCCTTGTG+AGG + chr1_3:33504869-33504888 Msa0114990:CDS 50.0%
TATTAGCCAGCTCCCTCACA+AGG - chr1_3:33504885-33504904 None:intergenic 50.0%
!! GGAAAAGGTGTCCAAGATGC+AGG + chr1_3:33504914-33504933 Msa0114990:CDS 50.0%
TTGGCCGGAGCTATTTGGAT+TGG + chr1_3:33505185-33505204 Msa0114990:intron 50.0%
GCTATGCTTGCGGTGCAAAA+TGG + chr1_3:33505425-33505444 Msa0114990:CDS 50.0%
GCCAAGACGTGCATGATTCA+TGG - chr1_3:33505684-33505703 None:intergenic 50.0%
GAGGATGGTTGTTGCGCCAT+TGG - chr1_3:33504058-33504077 None:intergenic 55.0%
! CGTCTACGGTGTCAAGGACA+AGG - chr1_3:33504087-33504106 None:intergenic 55.0%
CATCGGAGACAGGGACGTTA+GGG - chr1_3:33504147-33504166 None:intergenic 55.0%
TCATCGGAGACAGGGACGTT+AGG - chr1_3:33504148-33504167 None:intergenic 55.0%
GCGTACTTGTCATCGGAGAC+AGG - chr1_3:33504157-33504176 None:intergenic 55.0%
!! TGATGGTGGTGGTGCCAAGA+AGG - chr1_3:33504251-33504270 None:intergenic 55.0%
!! TGGTGGTGGTGACGGCATAA+GGG - chr1_3:33504332-33504351 None:intergenic 55.0%
!! ATGGTGGTGGTGACGGCATA+AGG - chr1_3:33504333-33504352 None:intergenic 55.0%
!! CAGTGCAATGGTGGTGGTGA+CGG - chr1_3:33504340-33504359 None:intergenic 55.0%
GATGCTACGCAGTGCAATGG+TGG - chr1_3:33504349-33504368 None:intergenic 55.0%
AACTCCTCACAACCAACCCC+AGG - chr1_3:33504823-33504842 None:intergenic 55.0%
AGATCTCCTTGTGAGGGAGC+TGG + chr1_3:33504876-33504895 Msa0114990:CDS 55.0%
GAGGATGGTTGTTGCGCCAT+TGG - chr1_3:33504058-33504077 None:intergenic 55.0%
! CGTCTACGGTGTCAAGGACA+AGG - chr1_3:33504087-33504106 None:intergenic 55.0%
CATCGGAGACAGGGACGTTA+GGG - chr1_3:33504147-33504166 None:intergenic 55.0%
TCATCGGAGACAGGGACGTT+AGG - chr1_3:33504148-33504167 None:intergenic 55.0%
GCGTACTTGTCATCGGAGAC+AGG - chr1_3:33504157-33504176 None:intergenic 55.0%
!! TGATGGTGGTGGTGCCAAGA+AGG - chr1_3:33504251-33504270 None:intergenic 55.0%
!! TGGTGGTGGTGACGGCATAA+GGG - chr1_3:33504332-33504351 None:intergenic 55.0%
!! ATGGTGGTGGTGACGGCATA+AGG - chr1_3:33504333-33504352 None:intergenic 55.0%
!! CAGTGCAATGGTGGTGGTGA+CGG - chr1_3:33504340-33504359 None:intergenic 55.0%
GATGCTACGCAGTGCAATGG+TGG - chr1_3:33504349-33504368 None:intergenic 55.0%
AACTCCTCACAACCAACCCC+AGG - chr1_3:33504823-33504842 None:intergenic 55.0%
AGATCTCCTTGTGAGGGAGC+TGG + chr1_3:33504876-33504895 Msa0114990:CDS 55.0%
GCTACGCAGTGCAATGGTGG+TGG - chr1_3:33504346-33504365 None:intergenic 60.0%
GTCACTTGGCATCCTGGGGT+TGG + chr1_3:33504808-33504827 Msa0114990:CDS 60.0%
!! GCATCCTGGGGTTGGTTGTG+AGG + chr1_3:33504816-33504835 Msa0114990:CDS 60.0%
GCTACGCAGTGCAATGGTGG+TGG - chr1_3:33504346-33504365 None:intergenic 60.0%
GTCACTTGGCATCCTGGGGT+TGG + chr1_3:33504808-33504827 Msa0114990:CDS 60.0%
!! GCATCCTGGGGTTGGTTGTG+AGG + chr1_3:33504816-33504835 Msa0114990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 33503516 33505908 33503516 ID=Msa0114990;Name=Msa0114990
chr1_3 mRNA 33503516 33505908 33503516 ID=Msa0114990-mRNA-1;Parent=Msa0114990;Name=Msa0114990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=542|1|1|1|1|1|2|428|331
chr1_3 exon 33503516 33504980 33503516 ID=Msa0114990-mRNA-1:exon:10499;Parent=Msa0114990-mRNA-1
chr1_3 exon 33505408 33505908 33505408 ID=Msa0114990-mRNA-1:exon:10500;Parent=Msa0114990-mRNA-1
chr1_3 five_prime_UTR 33503516 33504057 33503516 ID=Msa0114990-mRNA-1:five_prime_utr;Parent=Msa0114990-mRNA-1
chr1_3 CDS 33504058 33504980 33504058 ID=Msa0114990-mRNA-1:cds;Parent=Msa0114990-mRNA-1
chr1_3 CDS 33505408 33505480 33505408 ID=Msa0114990-mRNA-1:cds;Parent=Msa0114990-mRNA-1
chr1_3 three_prime_UTR 33505481 33505908 33505481 ID=Msa0114990-mRNA-1:three_prime_utr;Parent=Msa0114990-mRNA-1
Gene Sequence

>Msa0114990

ATGGCGCAACAACCATCCTCCTCATTCCTTGTCCTTGACACCGTAGACGACTTTTACTTCTCCGTTGTCTCCGACCATGAAATTGACCCTAACGTCCCTGTCTCCGATGACAAGTACGCTGAAGCATTACAGTTTCAAGAAACCTTATTGGCCTCTGTCATCACTTCTCACCAAAACCCTTCATCCTTTTCCTTCTTGGCACCACCACCATCATTACCGTGTGTAGCATCTTCATCAAAAACAGTCTCTGAAGAGATACAGTTTCATCAAACCCTTATGCCGTCACCACCACCATTGCACTGCGTAGCATCTTCATCGAAGGCTATTGATGTTGGCATTGTCTTCAAAGCTGATGAACAGTCTTCTCCGATCATCATTTGCGAGATTTGTGCGGAAACAAAAAGGACTGAGGAGATGTTCATGAATCAAATATGTTACCATTCATTTTGTTCTGAATGTGTTGTCAAACAAGTGGCTACAAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAGGGTGTGTTAGAGCTTGAATCTTGCAGGTCATTGCTTCCAAAAGAGTTGATTGATAGGTGGAATGATGCATTGTGTGAGGCTTTTATTCTTGCTGTTCCTAAGTTCTATTGCCCGTTTAAGGATTGTTCTGAAATGTTGCTTGATGAGGATGAAGGAAGAGAAGATGTTAGGGAATCTGAGTGCCCTTCTTGTCATAGATTGTTTTGTGCAAGCTGTCATGTCACTTGGCATCCTGGGGTTGGTTGTGAGGAGTTTCAAACAATGAATGTGGATGAAAGAGGAAGGGAAGATCTCCTTGTGAGGGAGCTGGCTAATAAGAAAAGGTGGAAAAGGTGTCCAAGATGCAGGTTCTATGTTGAAAAAAGGGATGGATGTTTGCATATTACGTGCAGGTGCAAATTTGAGTTTTGCTATGCTTGCGGTGCAAAATGGACATCTTCTCATGGTGGTTGTCAAAGAAATTAG

Protein sequence

>Msa0114990

MAQQPSSSFLVLDTVDDFYFSVVSDHEIDPNVPVSDDKYAEALQFQETLLASVITSHQNPSSFSFLAPPPSLPCVASSSKTVSEEIQFHQTLMPSPPPLHCVASSSKAIDVGIVFKADEQSSPIIICEICAETKRTEEMFMNQICYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGVLELESCRSLLPKELIDRWNDALCEAFILAVPKFYCPFKDCSEMLLDEDEGREDVRESECPSCHRLFCASCHVTWHPGVGCEEFQTMNVDERGREDLLVRELANKKRWKRCPRCRFYVEKRDGCLHITCRCKFEFCYACGAKWTSSHGGCQRN*