AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012560 MtrunA17_Chr1g0206031 74.242 132 23 2 89 209 14 145 7.34e-63 193
Msa0012560 MtrunA17_Chr1g0206011 91.781 73 6 0 135 207 26 98 1.14e-43 145
Msa0012560 MtrunA17_Chr4g0031441 33.654 208 87 4 14 207 9 179 7.16e-30 112
Msa0012560 MtrunA17_Chr2g0301841 52.747 91 41 1 119 207 94 184 2.34e-24 98.2
Msa0012560 MtrunA17_Chr2g0301761 45.098 102 52 2 110 207 67 168 1.12e-23 95.5
Msa0012560 MtrunA17_Chr2g0301751 43.137 102 54 2 110 207 68 169 2.93e-22 92.0
Msa0012560 MtrunA17_Chr2g0301741 42.424 99 55 1 111 207 59 157 1.69e-21 90.1
Msa0012560 MtrunA17_Chr2g0301821 32.075 159 100 3 56 207 18 175 2.01e-21 89.7
Msa0012560 MtrunA17_Chr4g0031451 50.000 84 40 1 126 207 2 85 3.08e-20 85.1
Msa0012560 MtrunA17_Chr2g0301731 39.785 93 54 1 117 207 64 156 9.85e-17 77.0
Msa0012560 MtrunA17_Chr8g0344981 37.255 102 61 2 110 209 52 152 1.53e-15 73.9
Msa0012560 MtrunA17_Chr3g0103871 39.130 92 54 1 120 209 61 152 2.16e-13 67.4
Msa0012560 MtrunA17_Chr3g0103941 35.714 98 61 1 112 207 37 134 3.10e-12 64.3
Msa0012560 MtrunA17_Chr3g0103891 34.694 98 62 1 112 207 37 134 1.10e-11 62.4
Msa0012560 MtrunA17_Chr3g0103911 34.694 98 62 1 112 207 37 134 1.10e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012560 AT3G53690.1 50.549 91 43 1 121 209 115 205 3.39e-24 98.2
Msa0012560 AT3G14250.1 28.922 204 101 6 15 209 18 186 4.40e-21 89.7

Find 88 sgRNAs with CRISPR-Local

Find 577 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGATGTTAAACTGTATTT+TGG 0.159141 1_1:+18853429 Msa0012560:three_prime_UTR
GTGGATGCTAGTGTAGATTT+TGG 0.172622 1_1:+18853492 Msa0012560:three_prime_UTR
AGCTTTCATATGAGAATATT+TGG 0.191630 1_1:+18853574 Msa0012560:three_prime_UTR
GGAACTCCTATTTAAAAGTT+AGG 0.218706 1_1:+18853355 Msa0012560:three_prime_UTR
ACAGTTGCAAGAAACCTTAT+TGG 0.255151 1_1:+18844324 Msa0012560:CDS
TCCAAAGCCAAGGGCATTCT+TGG 0.267359 1_1:+18853398 Msa0012560:three_prime_UTR
AGGAAAGATTCTCTATATTA+TGG 0.268444 1_1:+18853466 Msa0012560:three_prime_UTR
CACCTATCAATCAACTCTTT+TGG 0.279931 1_1:-18844763 None:intergenic
TGCAAAGTATCTGTTGATTC+AGG 0.282246 1_1:+18853629 Msa0012560:three_prime_UTR
TCCAAGAATGCCCTTGGCTT+TGG 0.307615 1_1:-18853399 None:intergenic
GCTATGCTTGCGGTGCAAAA+TGG 0.311093 1_1:+18845562 Msa0012560:CDS
AGTAAAACAATTGAGTTGTA+TGG 0.346819 1_1:+18853138 Msa0012560:three_prime_UTR
TGTTAGAGCTTGAATCTTGC+AGG 0.348834 1_1:+18844731 Msa0012560:CDS
TGAATAATTGCAAATGCTCT+TGG 0.351532 1_1:-18853267 None:intergenic
ATGGTGGTGGTGACGGCATA+AGG 0.364881 1_1:-18844468 None:intergenic
AGGAAAAGGATGAAGGGTTT+TGG 0.374297 1_1:-18844366 None:intergenic
AGATTTGTGCGGAAACAAAA+AGG 0.391913 1_1:+18844578 Msa0012560:CDS
GCAGAACTAAATTGCGGTTC+GGG 0.394506 1_1:+18853334 Msa0012560:three_prime_UTR
AGTGATGACAGAGGCCAATA+AGG 0.404886 1_1:-18844338 None:intergenic
TCATCGGAGACAGGGACGTT+AGG 0.409844 1_1:-18844283 None:intergenic
GATGCTACACACGGTAATAA+TGG 0.412623 1_1:-18844403 None:intergenic
CTATTTAAAAGTTAGGGAAA+TGG 0.416320 1_1:+18853362 Msa0012560:three_prime_UTR
AGCAGAACTAAATTGCGGTT+CGG 0.428037 1_1:+18853333 Msa0012560:three_prime_UTR
ATATTTGTAGAGCATTATAC+TGG 0.432174 1_1:+18853195 Msa0012560:three_prime_UTR
ACACATTTGTTATGTTGTCT+TGG 0.442504 1_1:-18844681 None:intergenic
GAACTCCTATTTAAAAGTTA+GGG 0.447970 1_1:+18853356 Msa0012560:three_prime_UTR
TTCCAAAAGAGTTGATTGAT+AGG 0.467343 1_1:+18844761 Msa0012560:CDS
GAGGATGGTTGTTGCGCCAT+TGG 0.477772 1_1:-18844193 None:intergenic
TTGGGATTGGTATGAGAAAG+TGG 0.485612 1_1:+18853511 Msa0012560:three_prime_UTR
ATAACAAATGTGTCTTGTCC+TGG 0.488527 1_1:+18844691 Msa0012560:CDS
GTTAGGGTCAATTTCATTGT+CGG 0.489721 1_1:-18844266 None:intergenic
CATCGGAGACAGGGACGTTA+GGG 0.494082 1_1:-18844282 None:intergenic
TTGTCCTGGTTTGAACTGCA+AGG 0.494597 1_1:+18844705 Msa0012560:CDS
GCGTACTTGTCATCGGAGAC+AGG 0.495039 1_1:-18844292 None:intergenic
TCATCGAAGGCTATTGATGT+TGG 0.512485 1_1:+18844508 Msa0012560:CDS
CAATTTAGTTCTGCTAGGTA+AGG 0.518592 1_1:-18853325 None:intergenic
GCCAAGAAGGAAAAGGATGA+AGG 0.524777 1_1:-18844373 None:intergenic
CACATTCAGAACAAAATGAA+TGG 0.525752 1_1:-18844633 None:intergenic
CATCATTTGCGAGATTTGTG+CGG 0.525830 1_1:+18844567 Msa0012560:CDS
TTAAACGGGCAATAGAACTT+AGG 0.535232 1_1:-18844823 None:intergenic
GATTGAGCTGCATCAACCAC+AGG 0.538892 1_1:+18853599 Msa0012560:three_prime_UTR
TGGTGGTGGTGACGGCATAA+GGG 0.541971 1_1:-18844467 None:intergenic
TGAGACACGTTCACAAAAGA+CGG 0.551131 1_1:-18853165 None:intergenic
GGTGTCAAGGTCAAGGAATG+AGG 0.553325 1_1:-18844215 None:intergenic
CGTCTACGGTGTCAAGGTCA+AGG 0.562627 1_1:-18844222 None:intergenic
AAACTGTCCAAGAATGCCCT+TGG 0.565377 1_1:-18853405 None:intergenic
GTAGAGCATTATACTGGTGA+AGG 0.567027 1_1:+18853201 Msa0012560:three_prime_UTR
TGCTTCAGCGTACTTGTCAT+CGG 0.567735 1_1:-18844299 None:intergenic
TAATGGTGGTGGTGCCAAGA+AGG 0.569624 1_1:-18844386 None:intergenic
CAGTGCAATGGTGGTGGTGA+CGG 0.569709 1_1:-18844475 None:intergenic
ATTCTCTATATTATGGAAGG+TGG 0.569959 1_1:+18853473 Msa0012560:three_prime_UTR
AAACGAGTTAGCATCGAGGA+TGG 0.575089 1_1:+18853110 Msa0012560:exon
TGTCCTGGTTTGAACTGCAA+GGG 0.576754 1_1:+18844706 Msa0012560:CDS
AATTTCATTGTCGGAGACAA+CGG 0.581243 1_1:-18844257 None:intergenic
CAAAAGAGTTGATTGATAGG+TGG 0.583180 1_1:+18844764 Msa0012560:CDS
AAGATTCTCTATATTATGGA+AGG 0.592994 1_1:+18853470 Msa0012560:three_prime_UTR
AAAACATGCTACATTCATGA+TGG 0.594459 1_1:+18853302 Msa0012560:three_prime_UTR
CTGCGTAGCATCTTCATCGA+AGG 0.598053 1_1:+18844495 Msa0012560:CDS
ACACCCTTGCAGTTCAAACC+AGG 0.598898 1_1:-18844709 None:intergenic
AAAAGTCGTCTACGGTGTCA+AGG 0.599527 1_1:-18844228 None:intergenic
GAGACACGTTCACAAAAGAC+GGG 0.604092 1_1:-18853164 None:intergenic
GTTGCTATGAAGATTAGAGT+AGG 0.605906 1_1:+18853231 Msa0012560:three_prime_UTR
GCAAAATGGACATCTTCTCA+TGG 0.606786 1_1:+18845576 Msa0012560:CDS
GAGATATTGATCCAAAGCCA+AGG 0.607190 1_1:+18853388 Msa0012560:three_prime_UTR
CAAATCTCGCAAATGATGAT+CGG 0.607678 1_1:-18844562 None:intergenic
CCAAGAAGGAAAAGGATGAA+GGG 0.617075 1_1:-18844372 None:intergenic
TACCTAGCAGAACTAAATTG+CGG 0.623189 1_1:+18853328 Msa0012560:three_prime_UTR
TGGTGGTGCCAAGAAGGAAA+AGG 0.625615 1_1:-18844380 None:intergenic
GCTACGCAGTGCAATGGTGG+TGG 0.627167 1_1:-18844481 None:intergenic
AACGAGTTAGCATCGAGGAT+GGG 0.627849 1_1:+18853111 Msa0012560:three_prime_UTR
GGAGAAGTAAAAGTCGTCTA+CGG 0.631739 1_1:-18844236 None:intergenic
AGGTCAAGGAATGAGGAGGA+TGG 0.638287 1_1:-18844208 None:intergenic
CGTACTTGTCATCGGAGACA+GGG 0.638650 1_1:-18844291 None:intergenic
AGATATTGATCCAAAGCCAA+GGG 0.640291 1_1:+18853389 Msa0012560:three_prime_UTR
ATGAAGATTAGAGTAGGCAA+AGG 0.643746 1_1:+18853237 Msa0012560:three_prime_UTR
TGAATGTGTTGTCAAACAAG+TGG 0.654131 1_1:+18844648 Msa0012560:CDS
AACCGCAATTTAGTTCTGCT+AGG 0.654522 1_1:-18853330 None:intergenic
GATGCTACGCAGTGCAATGG+TGG 0.655147 1_1:-18844484 None:intergenic
GTCAAGGTCAAGGAATGAGG+AGG 0.658566 1_1:-18844212 None:intergenic
GAAGATGCTACGCAGTGCAA+TGG 0.668125 1_1:-18844487 None:intergenic
TTTGATGAAGATGCTACACA+CGG 0.680690 1_1:-18844412 None:intergenic
ATTGAGCTGCATCAACCACA+GGG 0.682058 1_1:+18853600 Msa0012560:three_prime_UTR
ACACACGGTAATAATGGTGG+TGG 0.687099 1_1:-18844397 None:intergenic
GCTACACACGGTAATAATGG+TGG 0.699706 1_1:-18844400 None:intergenic
TTATACTGGTGAAGGAAGTG+TGG 0.711055 1_1:+18853209 Msa0012560:three_prime_UTR
GTGGAATGATGCATTGTGTG+AGG 0.727329 1_1:+18844783 Msa0012560:CDS
TTGGTGAGAAGTGATGACAG+AGG 0.745687 1_1:-18844347 None:intergenic
AGTGAAACGAGTTAGCATCG+AGG 0.799736 1_1:+18853106 Msa0012560:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATACAATATTAACAA+AGG + chr1_1:18846145-18846164 Msa0012560:intron 10.0%
!! GAAATAAAATGATTATATTA+CGG + chr1_1:18847082-18847101 Msa0012560:intron 10.0%
!!! TTTATTTTTATTGAAAAATG+AGG - chr1_1:18848481-18848500 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAAAGA+AGG + chr1_1:18849133-18849152 Msa0012560:intron 10.0%
!!! TTTTATAAAGAAAAAAAGTT+CGG - chr1_1:18849303-18849322 None:intergenic 10.0%
!!! TTTTAATTGAAATTAAAAAG+TGG + chr1_1:18850703-18850722 Msa0012560:intron 10.0%
!! TTTAATTGAAATTAAAAAGT+GGG + chr1_1:18850704-18850723 Msa0012560:intron 10.0%
!! AAACTAAGTAAAAAAAATTA+AGG - chr1_1:18851951-18851970 None:intergenic 10.0%
!! AAAAAATAAATGTTAAAAAG+AGG - chr1_1:18853054-18853073 None:intergenic 10.0%
!!! ATTCAATTCTTTTCTATTTT+CGG + chr1_1:18845140-18845159 Msa0012560:intron 15.0%
!!! ATTTTTAAATTGTGTGTTTT+TGG + chr1_1:18845208-18845227 Msa0012560:intron 15.0%
!! AATTAACAAAGTAAAACTAA+AGG - chr1_1:18845262-18845281 None:intergenic 15.0%
!! TACAACAATTTCTTAATTAA+GGG - chr1_1:18845478-18845497 None:intergenic 15.0%
!! TTACAACAATTTCTTAATTA+AGG - chr1_1:18845479-18845498 None:intergenic 15.0%
!! AGAAAAAGAAAATATTTGAT+TGG - chr1_1:18846108-18846127 None:intergenic 15.0%
!!! TTTTTTTTATTAACAAAGGA+CGG + chr1_1:18846269-18846288 Msa0012560:intron 15.0%
!! AAAATATAAATTATACGACA+GGG - chr1_1:18848010-18848029 None:intergenic 15.0%
!! AAAAATATAAATTATACGAC+AGG - chr1_1:18848011-18848030 None:intergenic 15.0%
!! AAAATTTGTGATAAATGATT+TGG - chr1_1:18848317-18848336 None:intergenic 15.0%
!! TAATTTATAGACTAAATTGT+TGG + chr1_1:18848574-18848593 Msa0012560:intron 15.0%
!!! TAATTTTGATAATATTTGTG+AGG + chr1_1:18848622-18848641 Msa0012560:intron 15.0%
!!! ATTGATCTTTTAATTTGTTA+AGG + chr1_1:18848678-18848697 Msa0012560:intron 15.0%
!! TAGATAGATAGATATATTAA+AGG + chr1_1:18848744-18848763 Msa0012560:intron 15.0%
!! TTAAAAAACAAAAATTGGTA+GGG + chr1_1:18849346-18849365 Msa0012560:intron 15.0%
!!! TTTTTTTATTGAAATAAAGG+TGG + chr1_1:18849451-18849470 Msa0012560:intron 15.0%
!!! TCAAATTTTGAAAATTTCAT+TGG - chr1_1:18849752-18849771 None:intergenic 15.0%
!! AAAAAAAAAATCAGAATGTT+TGG - chr1_1:18850687-18850706 None:intergenic 15.0%
!! TAAGAATATGAAATAAAAAG+TGG + chr1_1:18850859-18850878 Msa0012560:intron 15.0%
!!! GTTTTTTATTACTATAGTTA+AGG + chr1_1:18852057-18852076 Msa0012560:intron 15.0%
!! ATAAATAAAAACCCTATATA+TGG - chr1_1:18852791-18852810 None:intergenic 15.0%
!!! TGTTTAACGTTTTGATTAAA+AGG + chr1_1:18845404-18845423 Msa0012560:intron 20.0%
!! AGAAAAAGAAAATAGTTGAT+TGG - chr1_1:18846013-18846032 None:intergenic 20.0%
!!! TGCCTTTTTTTTATTAACAA+AGG + chr1_1:18846265-18846284 Msa0012560:intron 20.0%
!! GTCCTTTGTTAATAAAAAAA+AGG - chr1_1:18846270-18846289 None:intergenic 20.0%
!!! ACTTTGCATTTTCATATTTA+TGG + chr1_1:18846834-18846853 Msa0012560:intron 20.0%
!! AGCATTATGAACTTATATTA+CGG + chr1_1:18847050-18847069 Msa0012560:intron 20.0%
!! AAATATTTACAGAAGAAACA+CGG + chr1_1:18847109-18847128 Msa0012560:intron 20.0%
!!! TACAACTCTAAAAAGAAAAA+TGG - chr1_1:18847229-18847248 None:intergenic 20.0%
!!! TTTCTTTTTAGAGTTGTATT+TGG + chr1_1:18847231-18847250 Msa0012560:intron 20.0%
!! AATGATCATGATTATAAACT+TGG + chr1_1:18847315-18847334 Msa0012560:intron 20.0%
!!! AATCAAATTTTGCATATAAC+AGG - chr1_1:18847525-18847544 None:intergenic 20.0%
!! AATTATCAAAAAGAAACTTG+TGG + chr1_1:18847776-18847795 Msa0012560:intron 20.0%
!! AAATATAAATTATACGACAG+GGG - chr1_1:18848009-18848028 None:intergenic 20.0%
!!! TATTTTAGAGACTAAATTGA+TGG - chr1_1:18848377-18848396 None:intergenic 20.0%
!!! TATACACTTTTTTCTTGTTA+GGG - chr1_1:18848659-18848678 None:intergenic 20.0%
!!! ATATACACTTTTTTCTTGTT+AGG - chr1_1:18848660-18848679 None:intergenic 20.0%
!!! ATCTTTTAATTTGTTAAGGT+TGG + chr1_1:18848682-18848701 Msa0012560:intron 20.0%
!! AGTCGTTAAAAAACAAAAAT+TGG + chr1_1:18849341-18849360 Msa0012560:intron 20.0%
!! GTTAAAAAACAAAAATTGGT+AGG + chr1_1:18849345-18849364 Msa0012560:intron 20.0%
!!! CAACAAAAAATCATGAATTT+TGG - chr1_1:18850348-18850367 None:intergenic 20.0%
!! GAAAGATAATATTAAGATAG+TGG - chr1_1:18850428-18850447 None:intergenic 20.0%
!! TTAAATTAAGAGAAATGCTA+GGG - chr1_1:18850783-18850802 None:intergenic 20.0%
!! ATTAAATTAAGAGAAATGCT+AGG - chr1_1:18850784-18850803 None:intergenic 20.0%
!! AATATGAAATAAAAAGTGGT+AGG + chr1_1:18850863-18850882 Msa0012560:intron 20.0%
!! CATTGAATACTTAATGTATT+TGG - chr1_1:18851187-18851206 None:intergenic 20.0%
!! ATACAATAAAATGGATAAGT+TGG - chr1_1:18851258-18851277 None:intergenic 20.0%
!! CATAGATTCATACAATAAAA+TGG - chr1_1:18851267-18851286 None:intergenic 20.0%
!! TATTGTATGAATCTATGATT+CGG + chr1_1:18851270-18851289 Msa0012560:intron 20.0%
!!! TTTTACTTAGTTTTAGTATG+AGG + chr1_1:18851958-18851977 Msa0012560:intron 20.0%
!!! TTTACTTAGTTTTAGTATGA+GGG + chr1_1:18851959-18851978 Msa0012560:intron 20.0%
!!! ATAGTTAAGGTTTTAAATCT+AGG + chr1_1:18852070-18852089 Msa0012560:intron 20.0%
!!! TTGAGAAATTTGTTTTTACA+AGG + chr1_1:18852479-18852498 Msa0012560:intron 20.0%
!!! ATTTCTCTTTTTAGTAGATA+TGG + chr1_1:18852535-18852554 Msa0012560:intron 20.0%
!! CTTTCAAACAAATTGTAAAT+TGG - chr1_1:18852669-18852688 None:intergenic 20.0%
!!! CAATTTACAATTTGTTTGAA+AGG + chr1_1:18852667-18852686 Msa0012560:intron 20.0%
!! AACTTAAATACATATGCTTA+TGG - chr1_1:18852894-18852913 None:intergenic 20.0%
!!! AAGTTTATACCCTTATTTTA+TGG + chr1_1:18852909-18852928 Msa0012560:intron 20.0%
!!! GCATAATCAATTATTTTCTA+TGG - chr1_1:18852965-18852984 None:intergenic 20.0%
! ATTTCAGAACAATCCTTAAA+CGG - chr1_1:18844841-18844860 None:intergenic 25.0%
! AAAACAATCTATGACAAGAA+GGG - chr1_1:18844912-18844931 None:intergenic 25.0%
!!! GTTATCATTTTTTGTCACTT+TGG + chr1_1:18845235-18845254 Msa0012560:intron 25.0%
! AAATGAACGATATTGATCTT+TGG - chr1_1:18845370-18845389 None:intergenic 25.0%
! TTAATCAAAACGTTAAACAG+TGG - chr1_1:18845403-18845422 None:intergenic 25.0%
!!! TAACGTTTTGATTAAAAGGA+AGG + chr1_1:18845408-18845427 Msa0012560:intron 25.0%
!! TACCATGATTTAACTTATGA+TGG - chr1_1:18845435-18845454 None:intergenic 25.0%
! AATCAGTTAACAACTGAATA+AGG + chr1_1:18845505-18845524 Msa0012560:intron 25.0%
! ATCAGTTAACAACTGAATAA+GGG + chr1_1:18845506-18845525 Msa0012560:intron 25.0%
! AAATTAGATAGATGCAAGAA+GGG + chr1_1:18845611-18845630 Msa0012560:intron 25.0%
!! TTTTGATATATCCATGGATA+GGG + chr1_1:18845657-18845676 Msa0012560:intron 25.0%
! TTAATAAAAAAAAGGCAACC+CGG - chr1_1:18846262-18846281 None:intergenic 25.0%
!!! ATAATTGGTTTTGTGATAGA+AGG - chr1_1:18846384-18846403 None:intergenic 25.0%
!! TTTTCATAATATTCCCACTT+AGG - chr1_1:18846463-18846482 None:intergenic 25.0%
!!! ATCTACTTATTTGCTTTTTG+TGG + chr1_1:18846987-18847006 Msa0012560:intron 25.0%
!!! TCTACTTATTTGCTTTTTGT+GGG + chr1_1:18846988-18847007 Msa0012560:intron 25.0%
! TCTTGAGTATTTAAATCTAG+TGG + chr1_1:18847171-18847190 Msa0012560:intron 25.0%
!!! TGTATTTGGAGAAAGTATTA+TGG + chr1_1:18847245-18847264 Msa0012560:intron 25.0%
!! TAAAGAACTAGAATGTTTTC+AGG - chr1_1:18847452-18847471 None:intergenic 25.0%
!!! ATATTTTGGAAAACTGCATT+TGG + chr1_1:18847495-18847514 Msa0012560:intron 25.0%
!!! TATTTTGGAAAACTGCATTT+GGG + chr1_1:18847496-18847515 Msa0012560:intron 25.0%
!!! AATTAGTAATCTTCGAGTTT+TGG - chr1_1:18847612-18847631 None:intergenic 25.0%
!!! TATGTATTTTTTCAACTCCA+AGG + chr1_1:18847749-18847768 Msa0012560:intron 25.0%
!!! CTTTTTGATAATTGAATCCT+TGG - chr1_1:18847769-18847788 None:intergenic 25.0%
! GTAACAACTTAATGAGAAAA+TGG - chr1_1:18848082-18848101 None:intergenic 25.0%
!!! GATGGATTAGTAATAGTTTT+TGG - chr1_1:18848450-18848469 None:intergenic 25.0%
! AAAAGAGACAATCATAACTT+AGG + chr1_1:18848498-18848517 Msa0012560:intron 25.0%
! AAAGAGACAATCATAACTTA+GGG + chr1_1:18848499-18848518 Msa0012560:intron 25.0%
!!! TGTTATTTGAACAACCATTT+TGG + chr1_1:18848795-18848814 Msa0012560:intron 25.0%
!! CATTTCATCATTGTACTTTT+TGG - chr1_1:18849178-18849197 None:intergenic 25.0%
!!! AACCCACATTTTTTTTTTTG+AGG + chr1_1:18849198-18849217 Msa0012560:intron 25.0%
!!! ACCCACATTTTTTTTTTTGA+GGG + chr1_1:18849199-18849218 Msa0012560:intron 25.0%
! ACCCTCAAAAAAAAAAATGT+GGG - chr1_1:18849203-18849222 None:intergenic 25.0%
! TACCCTCAAAAAAAAAAATG+TGG - chr1_1:18849204-18849223 None:intergenic 25.0%
!!! TTTCTTAATTTGTGTCTTGA+CGG + chr1_1:18849611-18849630 Msa0012560:intron 25.0%
! AAGAATAAGTTTAGATGAGT+AGG - chr1_1:18849681-18849700 None:intergenic 25.0%
!! AACACCAAAATTGATGATTA+GGG - chr1_1:18849983-18850002 None:intergenic 25.0%
! AAAGAGATGCCTTAAAATTA+AGG - chr1_1:18850015-18850034 None:intergenic 25.0%
! TGCAATTGAGAAAATTGTTA+GGG - chr1_1:18850057-18850076 None:intergenic 25.0%
! TTGCAATTGAGAAAATTGTT+AGG - chr1_1:18850058-18850077 None:intergenic 25.0%
!! CTCTTTTTGGATTTAAAGAT+AGG - chr1_1:18850127-18850146 None:intergenic 25.0%
! GTTGTCTATAAATAGAGATT+TGG + chr1_1:18850364-18850383 Msa0012560:intron 25.0%
! ACACATTGACAATTCTTATT+GGG - chr1_1:18850620-18850639 None:intergenic 25.0%
! ACAATGCATTATTATATGCA+GGG + chr1_1:18850886-18850905 Msa0012560:intron 25.0%
! TCCTATTTATTCACCTTATA+AGG + chr1_1:18850931-18850950 Msa0012560:intron 25.0%
! ACCTTATAAGGTGAATAAAT+AGG - chr1_1:18850935-18850954 None:intergenic 25.0%
! TAGAAAATAATGTGAAGTGT+TGG + chr1_1:18851013-18851032 Msa0012560:intron 25.0%
!! AGAAAATAATGTGAAGTGTT+GGG + chr1_1:18851014-18851033 Msa0012560:intron 25.0%
! AATGTTGAAACCATTGTAAA+TGG + chr1_1:18851057-18851076 Msa0012560:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr1_1:18851222-18851241 None:intergenic 25.0%
!!! TAAGCAAAAAACCACTTTTT+AGG + chr1_1:18851123-18851142 Msa0012560:intron 25.0%
! TATTGAATGAACCTAAAAAG+TGG - chr1_1:18851137-18851156 None:intergenic 25.0%
! CATTCAATACTCAATGTATT+TGG + chr1_1:18851148-18851167 Msa0012560:intron 25.0%
! TATTCAATGAACCTAAAAAG+TGG + chr1_1:18851198-18851217 Msa0012560:intron 25.0%
!!! TAAGCAAAAAACCACTTTTT+AGG - chr1_1:18851123-18851142 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr1_1:18851222-18851241 Msa0012560:intron 25.0%
! ATTTGTGATGAAAACTGAAA+AGG + chr1_1:18851490-18851509 Msa0012560:intron 25.0%
! TTTGTGATGAAAACTGAAAA+GGG + chr1_1:18851491-18851510 Msa0012560:intron 25.0%
! AGCTATACATGAAAAGAAAA+TGG - chr1_1:18851746-18851765 None:intergenic 25.0%
! AAGTAAACAACAATAATACC+TGG + chr1_1:18852030-18852049 Msa0012560:intron 25.0%
! TAGTAATAAAAAACTGATCC+AGG - chr1_1:18852051-18852070 None:intergenic 25.0%
! AGTTTGAACTTCCATATATA+GGG + chr1_1:18852777-18852796 Msa0012560:intron 25.0%
! CACATCATTCCATAAAATAA+GGG - chr1_1:18852921-18852940 None:intergenic 25.0%
! ACACATCATTCCATAAAATA+AGG - chr1_1:18852922-18852941 None:intergenic 25.0%
!! AGTAAAACAATTGAGTTGTA+TGG + chr1_1:18853138-18853157 Msa0012560:three_prime_UTR 25.0%
!! ATATTTGTAGAGCATTATAC+TGG + chr1_1:18853195-18853214 Msa0012560:three_prime_UTR 25.0%
! GAACTCCTATTTAAAAGTTA+GGG + chr1_1:18853356-18853375 Msa0012560:three_prime_UTR 25.0%
!! CATTTCCCTAACTTTTAAAT+AGG - chr1_1:18853364-18853383 None:intergenic 25.0%
! CTATTTAAAAGTTAGGGAAA+TGG + chr1_1:18853362-18853381 Msa0012560:three_prime_UTR 25.0%
! AGGAAAGATTCTCTATATTA+TGG + chr1_1:18853466-18853485 Msa0012560:three_prime_UTR 25.0%
! AAGATTCTCTATATTATGGA+AGG + chr1_1:18853470-18853489 Msa0012560:three_prime_UTR 25.0%
!!! GTTTGAACTTCTTATTTTCA+TGG - chr1_1:18853551-18853570 None:intergenic 25.0%
! AGCTTTCATATGAGAATATT+TGG + chr1_1:18853574-18853593 Msa0012560:three_prime_UTR 25.0%
CACATTCAGAACAAAATGAA+TGG - chr1_1:18844636-18844655 None:intergenic 30.0%
!! ACACATTTGTTATGTTGTCT+TGG - chr1_1:18844684-18844703 None:intergenic 30.0%
! TTCCAAAAGAGTTGATTGAT+AGG + chr1_1:18844761-18844780 Msa0012560:CDS 30.0%
TTTCAGAACAATCCTTAAAC+GGG - chr1_1:18844840-18844859 None:intergenic 30.0%
CAAAACAATCTATGACAAGA+AGG - chr1_1:18844913-18844932 None:intergenic 30.0%
CTAATAAGAAAAGGTGGAAA+AGG + chr1_1:18845037-18845056 Msa0012560:intron 30.0%
CAGGTTCTATGTTGAAAAAA+GGG + chr1_1:18845071-18845090 Msa0012560:intron 30.0%
TTCTATGTTGAAAAAAGGGA+TGG + chr1_1:18845075-18845094 Msa0012560:intron 30.0%
TAAGTATGAGATGATTGTCT+TGG + chr1_1:18845288-18845307 Msa0012560:intron 30.0%
GACCATCATAAGTTAAATCA+TGG + chr1_1:18845430-18845449 Msa0012560:intron 30.0%
TTCTTAATTAAGGGTCACTT+TGG - chr1_1:18845469-18845488 None:intergenic 30.0%
GAAATTAGATAGATGCAAGA+AGG + chr1_1:18845610-18845629 Msa0012560:intron 30.0%
GGGATGAAATATATTTCTTG+TGG + chr1_1:18845631-18845650 Msa0012560:intron 30.0%
!!! TGGTTGTTTTGATATATCCA+TGG + chr1_1:18845651-18845670 Msa0012560:intron 30.0%
!! GTTTTGATATATCCATGGAT+AGG + chr1_1:18845656-18845675 Msa0012560:intron 30.0%
TTTGATATATCCATGGATAG+GGG + chr1_1:18845658-18845677 Msa0012560:intron 30.0%
ATCTGTCTCTTTAAACAGTA+AGG - chr1_1:18845689-18845708 None:intergenic 30.0%
ATAGCAAGTACACTTTCAAA+AGG - chr1_1:18845781-18845800 None:intergenic 30.0%
!!! ATGAAAATGACGTTTTGGAA+AGG - chr1_1:18845935-18845954 None:intergenic 30.0%
! ACAAGATGAAAATGACGTTT+TGG - chr1_1:18845940-18845959 None:intergenic 30.0%
! CATTTTCATCTTGTCTTTCT+TGG + chr1_1:18845946-18845965 Msa0012560:intron 30.0%
! TCAACTTTTGTCTTCTTTCT+TGG + chr1_1:18846041-18846060 Msa0012560:intron 30.0%
ATTTGATTGGATTGTAGAGA+TGG - chr1_1:18846095-18846114 None:intergenic 30.0%
AACCAATTATGACTACAAGT+TGG + chr1_1:18846394-18846413 Msa0012560:intron 30.0%
ACCAATTATGACTACAAGTT+GGG + chr1_1:18846395-18846414 Msa0012560:intron 30.0%
GAAATCTTTCACCAAAAGAA+GGG + chr1_1:18846487-18846506 Msa0012560:intron 30.0%
ACTTACCATCATAGTTACTA+TGG + chr1_1:18846641-18846660 Msa0012560:intron 30.0%
ACAAACCATAGTAACTATGA+TGG - chr1_1:18846649-18846668 None:intergenic 30.0%
! TACTATGGTTTGTACAATGA+AGG + chr1_1:18846656-18846675 Msa0012560:intron 30.0%
GTATAATGCAAACTCATTAC+TGG + chr1_1:18846879-18846898 Msa0012560:intron 30.0%
TTACCTGTAGCGTTATTATT+TGG + chr1_1:18846958-18846977 Msa0012560:intron 30.0%
ACTTATATTACGGTACAATG+TGG + chr1_1:18847060-18847079 Msa0012560:intron 30.0%
AAAAAGAAACCTCAGACTTA+TGG + chr1_1:18847199-18847218 Msa0012560:intron 30.0%
GTATTATGGATGAATTGAAG+TGG + chr1_1:18847259-18847278 Msa0012560:intron 30.0%
CATAAAAAGAACGATCAATG+TGG + chr1_1:18847343-18847362 Msa0012560:intron 30.0%
! TACACTTATACACACCATTT+TGG + chr1_1:18847422-18847441 Msa0012560:intron 30.0%
!! ATTTTGGAAAACTGCATTTG+GGG + chr1_1:18847497-18847516 Msa0012560:intron 30.0%
!!! GATTTACCAATTTTTGAGTG+AGG + chr1_1:18847541-18847560 Msa0012560:intron 30.0%
! ATTTTTCCCGTTTCTTTGAA+TGG + chr1_1:18848025-18848044 Msa0012560:intron 30.0%
! TGATTTGCCATTCAAAGAAA+CGG - chr1_1:18848035-18848054 None:intergenic 30.0%
AAATGAACTTTGTCGTACAA+AGG - chr1_1:18848059-18848078 None:intergenic 30.0%
ATTCTCGTGTCTTAATACAA+AGG - chr1_1:18848124-18848143 None:intergenic 30.0%
! TGTGATAAATGATTTGGAGA+TGG - chr1_1:18848311-18848330 None:intergenic 30.0%
!! AAAAATGAGGACTAGTTTGA+TGG - chr1_1:18848468-18848487 None:intergenic 30.0%
ATGAGAGAAAGGATATATGT+GGG - chr1_1:18849236-18849255 None:intergenic 30.0%
AATGAGAGAAAGGATATATG+TGG - chr1_1:18849237-18849256 None:intergenic 30.0%
ACATATATCCTTTCTCTCAT+TGG + chr1_1:18849236-18849255 Msa0012560:intron 30.0%
CATATATCCTTTCTCTCATT+GGG + chr1_1:18849237-18849256 Msa0012560:intron 30.0%
ATTTAATCCCAATGAGAGAA+AGG - chr1_1:18849247-18849266 None:intergenic 30.0%
ATTAGAGTTTGATGTGACAA+AGG + chr1_1:18849385-18849404 Msa0012560:intron 30.0%
TTAGAGTTTGATGTGACAAA+GGG + chr1_1:18849386-18849405 Msa0012560:intron 30.0%
CAATATTAGACCATGTCTAA+TGG + chr1_1:18849791-18849810 Msa0012560:intron 30.0%
! ATTGTTGAATGATGATGTGA+AGG + chr1_1:18849867-18849886 Msa0012560:intron 30.0%
! AATTGATGATTAGGGTTTGT+TGG - chr1_1:18849975-18849994 None:intergenic 30.0%
! CAAACCCTAATCATCAATTT+TGG + chr1_1:18849976-18849995 Msa0012560:intron 30.0%
! CAACACCAAAATTGATGATT+AGG - chr1_1:18849984-18850003 None:intergenic 30.0%
!!! AATCATCAATTTTGGTGTTG+AGG + chr1_1:18849984-18850003 Msa0012560:intron 30.0%
!!! ATCATCAATTTTGGTGTTGA+GGG + chr1_1:18849985-18850004 Msa0012560:intron 30.0%
AGATGCCTTAAAATTAAGGA+GGG - chr1_1:18850011-18850030 None:intergenic 30.0%
ATTGAGAAAATTGTTAGGGA+GGG - chr1_1:18850053-18850072 None:intergenic 30.0%
AATTGAGAAAATTGTTAGGG+AGG - chr1_1:18850054-18850073 None:intergenic 30.0%
!! AGATTTGATGCTTTGACTTT+TGG - chr1_1:18850169-18850188 None:intergenic 30.0%
!!! GACAGGTGTTATTTTATGAT+TGG + chr1_1:18850258-18850277 Msa0012560:intron 30.0%
TGGTTCATTTGATATGAACA+TGG + chr1_1:18850384-18850403 Msa0012560:intron 30.0%
!! TGTTAAAAGAGAGTGTTAGT+AGG - chr1_1:18850752-18850771 None:intergenic 30.0%
GACACATTGACAATTCTTAT+TGG - chr1_1:18850621-18850640 None:intergenic 30.0%
AAATCAGAATGTTTGGAAAC+AGG - chr1_1:18850680-18850699 None:intergenic 30.0%
AAATTAAAAAGTGGGACACA+TGG + chr1_1:18850712-18850731 Msa0012560:intron 30.0%
ACACATGGTCAATTCTTATT+GGG + chr1_1:18850727-18850746 Msa0012560:intron 30.0%
!! TGTTAAAAGAGAGTGTTAGT+AGG + chr1_1:18850752-18850771 Msa0012560:intron 30.0%
GACAATGCATTATTATATGC+AGG + chr1_1:18850885-18850904 Msa0012560:intron 30.0%
CAATGCATTATTATATGCAG+GGG + chr1_1:18850887-18850906 Msa0012560:intron 30.0%
TAGCTAGAATTCACCTTATA+AGG - chr1_1:18850947-18850966 None:intergenic 30.0%
TTCTTATTAACTACTTCCTC+CGG + chr1_1:18851091-18851110 Msa0012560:intron 30.0%
AATGGTGTGTATATCTAAGA+AGG - chr1_1:18851728-18851747 None:intergenic 30.0%
!! ATTTCATCGCCAGTTATTTT+TGG + chr1_1:18851919-18851938 Msa0012560:intron 30.0%
! TTTTAGTATGAGGGTCAAAA+TGG + chr1_1:18851968-18851987 Msa0012560:intron 30.0%
TTTAGTATGAGGGTCAAAAT+GGG + chr1_1:18851969-18851988 Msa0012560:intron 30.0%
! GTTATTAGTTTCCTGAAAGA+CGG + chr1_1:18852739-18852758 Msa0012560:intron 30.0%
GAGTTTGAACTTCCATATAT+AGG + chr1_1:18852776-18852795 Msa0012560:intron 30.0%
! TCTTGTTCTTGTGTTACTAT+AGG + chr1_1:18852812-18852831 Msa0012560:intron 30.0%
CATGTTCTGTAATATGAATG+TGG + chr1_1:18852835-18852854 Msa0012560:intron 30.0%
TGAATAATTGCAAATGCTCT+TGG - chr1_1:18853270-18853289 None:intergenic 30.0%
AAAACATGCTACATTCATGA+TGG + chr1_1:18853302-18853321 Msa0012560:three_prime_UTR 30.0%
GGAACTCCTATTTAAAAGTT+AGG + chr1_1:18853355-18853374 Msa0012560:three_prime_UTR 30.0%
! GACGATGTTAAACTGTATTT+TGG + chr1_1:18853429-18853448 Msa0012560:three_prime_UTR 30.0%
ATTCTCTATATTATGGAAGG+TGG + chr1_1:18853473-18853492 Msa0012560:three_prime_UTR 30.0%
AATTTCATTGTCGGAGACAA+CGG - chr1_1:18844260-18844279 None:intergenic 35.0%
GTTAGGGTCAATTTCATTGT+CGG - chr1_1:18844269-18844288 None:intergenic 35.0%
ACAGTTGCAAGAAACCTTAT+TGG + chr1_1:18844324-18844343 Msa0012560:CDS 35.0%
TTTGATGAAGATGCTACACA+CGG - chr1_1:18844415-18844434 None:intergenic 35.0%
CAAATCTCGCAAATGATGAT+CGG - chr1_1:18844565-18844584 None:intergenic 35.0%
AGATTTGTGCGGAAACAAAA+AGG + chr1_1:18844578-18844597 Msa0012560:CDS 35.0%
TGAATGTGTTGTCAAACAAG+TGG + chr1_1:18844648-18844667 Msa0012560:CDS 35.0%
ATAACAAATGTGTCTTGTCC+TGG + chr1_1:18844691-18844710 Msa0012560:CDS 35.0%
! CACCTATCAATCAACTCTTT+TGG - chr1_1:18844766-18844785 None:intergenic 35.0%
! CAAAAGAGTTGATTGATAGG+TGG + chr1_1:18844764-18844783 Msa0012560:CDS 35.0%
TTAAACGGGCAATAGAACTT+AGG - chr1_1:18844826-18844845 None:intergenic 35.0%
TAAGTTCTATTGCCCGTTTA+AGG + chr1_1:18844825-18844844 Msa0012560:intron 35.0%
!! TTCTGAAATGTTGCTTGATG+AGG + chr1_1:18844852-18844871 Msa0012560:intron 35.0%
ATGAAGGAAGAGAAGATGTT+AGG + chr1_1:18844875-18844894 Msa0012560:intron 35.0%
TGAAGGAAGAGAAGATGTTA+GGG + chr1_1:18844876-18844895 Msa0012560:intron 35.0%
GGAGTTTCAAACAATGAATG+TGG + chr1_1:18844975-18844994 Msa0012560:intron 35.0%
ACAATGAATGTGGATGAAAG+AGG + chr1_1:18844985-18845004 Msa0012560:intron 35.0%
GCAGGTTCTATGTTGAAAAA+AGG + chr1_1:18845070-18845089 Msa0012560:intron 35.0%
TGATTGTCTTGGCATTCATT+TGG + chr1_1:18845299-18845318 Msa0012560:intron 35.0%
!! TTTGAGTTTTGCTATGCTTG+CGG + chr1_1:18845552-18845571 Msa0012560:CDS 35.0%
ACAGAGTATGGATCTCAATA+CGG - chr1_1:18845907-18845926 None:intergenic 35.0%
TTGATTGGATTGTAGAGATG+GGG - chr1_1:18845998-18846017 None:intergenic 35.0%
GTTGATTGGATTGTAGAGAT+GGG - chr1_1:18845999-18846018 None:intergenic 35.0%
AGTTGATTGGATTGTAGAGA+TGG - chr1_1:18846000-18846019 None:intergenic 35.0%
!!! CTTACCCTGTTTTTACACAA+GGG - chr1_1:18846172-18846191 None:intergenic 35.0%
CTCTATTACATCCTTCACAT+TGG + chr1_1:18846292-18846311 Msa0012560:intron 35.0%
TCCCAACTTGTAGTCATAAT+TGG - chr1_1:18846399-18846418 None:intergenic 35.0%
! CTACAAGTTGGGAAATTTGA+TGG + chr1_1:18846406-18846425 Msa0012560:intron 35.0%
!! GGAAATTTGATGGACTACTA+TGG + chr1_1:18846416-18846435 Msa0012560:intron 35.0%
CGAAATCTTTCACCAAAAGA+AGG + chr1_1:18846486-18846505 Msa0012560:intron 35.0%
! TGTACAATGAAGGTATGCAA+AGG + chr1_1:18846666-18846685 Msa0012560:intron 35.0%
! GTACAATGAAGGTATGCAAA+GGG + chr1_1:18846667-18846686 Msa0012560:intron 35.0%
! ACCATTTTCTAAGCTTTCCA+TGG + chr1_1:18846690-18846709 Msa0012560:intron 35.0%
ACCATGGAAAGCTTAGAAAA+TGG - chr1_1:18846694-18846713 None:intergenic 35.0%
!! TCTTGATTTGGAGAAGCAAA+TGG - chr1_1:18846724-18846743 None:intergenic 35.0%
TTTGCTTCTCCAAATCAAGA+AGG + chr1_1:18846724-18846743 Msa0012560:intron 35.0%
AGACCAAATAATAACGCTAC+AGG - chr1_1:18846964-18846983 None:intergenic 35.0%
AATGGTTTACCATAAGTCTG+AGG - chr1_1:18847211-18847230 None:intergenic 35.0%
TGGATGAATTGAAGTGGTAA+AGG + chr1_1:18847265-18847284 Msa0012560:intron 35.0%
! AGTGGTAAAGGTTTAGAGTA+AGG + chr1_1:18847277-18847296 Msa0012560:intron 35.0%
! GTGGTAAAGGTTTAGAGTAA+GGG + chr1_1:18847278-18847297 Msa0012560:intron 35.0%
GAGTAAGGGAAATATATACG+AGG + chr1_1:18847292-18847311 Msa0012560:intron 35.0%
TGCGAAAAGTGAGTTAATCT+TGG + chr1_1:18847372-18847391 Msa0012560:intron 35.0%
CGTTCTTGATACACTTATGT+TGG - chr1_1:18847721-18847740 None:intergenic 35.0%
ATTGTTCTTTCAACGATTCC+TGG - chr1_1:18847971-18847990 None:intergenic 35.0%
GATTTGCCATTCAAAGAAAC+GGG - chr1_1:18848034-18848053 None:intergenic 35.0%
! GTTGTTACTCGTCTTTTAGA+TGG + chr1_1:18848094-18848113 Msa0012560:intron 35.0%
AAGTGTGTGTTCAAGTATGT+AGG - chr1_1:18848178-18848197 None:intergenic 35.0%
ACATACTTGAACACACACTT+AGG + chr1_1:18848178-18848197 Msa0012560:intron 35.0%
TATGGGTCAAATTGATGAGA+GGG - chr1_1:18848403-18848422 None:intergenic 35.0%
TTATGGGTCAAATTGATGAG+AGG - chr1_1:18848404-18848423 None:intergenic 35.0%
!! ACCATTTTGGTGACAACTTT+TGG + chr1_1:18848808-18848827 Msa0012560:intron 35.0%
!! CCATTTTGGTGACAACTTTT+GGG + chr1_1:18848809-18848828 Msa0012560:intron 35.0%
ACTAGAATGCTTATGCAACA+AGG + chr1_1:18849070-18849089 Msa0012560:intron 35.0%
ACTAGAATGCTTATGCAACA+AGG + chr1_1:18849070-18849089 Msa0012560:intron 35.0%
TTCAACACTACCATTAGACA+TGG - chr1_1:18849804-18849823 None:intergenic 35.0%
TGAATGCTTGTTTCAACATG+TGG + chr1_1:18849820-18849839 Msa0012560:intron 35.0%
!! AACATGTGGTTTTGCTCTAA+TGG + chr1_1:18849834-18849853 Msa0012560:intron 35.0%
TGCAGATTCAACATGTTGAA+TGG - chr1_1:18849908-18849927 None:intergenic 35.0%
GAGATGCCTTAAAATTAAGG+AGG - chr1_1:18850012-18850031 None:intergenic 35.0%
ATGAAACAAACCATGTGAGT+GGG + chr1_1:18850096-18850115 Msa0012560:intron 35.0%
CGTGGAATGAAAAGAGAATA+GGG + chr1_1:18850221-18850240 Msa0012560:intron 35.0%
AATGAAAAGAGAATAGGGAG+AGG + chr1_1:18850226-18850245 Msa0012560:intron 35.0%
!!! GGTGTTATTTTATGATTGGC+TGG + chr1_1:18850262-18850281 Msa0012560:intron 35.0%
GACACATGGTCAATTCTTAT+TGG + chr1_1:18850726-18850745 Msa0012560:intron 35.0%
GTGAATAAATAGGATGTCTG+GGG - chr1_1:18850925-18850944 None:intergenic 35.0%
GGTGAATAAATAGGATGTCT+GGG - chr1_1:18850926-18850945 None:intergenic 35.0%
AGGTGAATAAATAGGATGTC+TGG - chr1_1:18850927-18850946 None:intergenic 35.0%
! TAAGGTGAATTCTAGCTACT+AGG + chr1_1:18850949-18850968 Msa0012560:intron 35.0%
! TCATTCAACTTTTACCCTCT+AGG - chr1_1:18850978-18850997 None:intergenic 35.0%
TCAGCTAAGACCATTTACAA+TGG - chr1_1:18851070-18851089 None:intergenic 35.0%
!! ACTTCACTGACTTGAAATAG+TGG + chr1_1:18851580-18851599 Msa0012560:intron 35.0%
!! CTTCACTGACTTGAAATAGT+GGG + chr1_1:18851581-18851600 Msa0012560:intron 35.0%
GTGTGTATATCTAAGAAGGA+AGG - chr1_1:18851724-18851743 None:intergenic 35.0%
!!! TCGCCAGTTATTTTTGGATA+AGG + chr1_1:18851925-18851944 Msa0012560:intron 35.0%
! AGGCCTTATCCAAAAATAAC+TGG - chr1_1:18851931-18851950 None:intergenic 35.0%
TCATCCTCAATGTCTCATAT+TGG - chr1_1:18852126-18852145 None:intergenic 35.0%
GATATGTCAAGTGTGAGTTA+AGG + chr1_1:18852274-18852293 Msa0012560:intron 35.0%
! AACTTGGCATTGGGTTAAAT+AGG - chr1_1:18852351-18852370 None:intergenic 35.0%
! TTTAACCCAATGCCAAGTTT+TGG + chr1_1:18852352-18852371 Msa0012560:intron 35.0%
! TTAACCCAATGCCAAGTTTT+GGG + chr1_1:18852353-18852372 Msa0012560:intron 35.0%
TAACCTCTGACATAAGTTTG+CGG - chr1_1:18852723-18852742 None:intergenic 35.0%
TATATGGAAGTTCAAACTCC+AGG - chr1_1:18852775-18852794 None:intergenic 35.0%
TTCACTTTCCTGAATAGGAT+AGG - chr1_1:18853092-18853111 None:intergenic 35.0%
GTTGCTATGAAGATTAGAGT+AGG + chr1_1:18853231-18853250 Msa0012560:three_prime_UTR 35.0%
ATGAAGATTAGAGTAGGCAA+AGG + chr1_1:18853237-18853256 Msa0012560:three_prime_UTR 35.0%
!! CAATTTAGTTCTGCTAGGTA+AGG - chr1_1:18853328-18853347 None:intergenic 35.0%
TACCTAGCAGAACTAAATTG+CGG + chr1_1:18853328-18853347 Msa0012560:three_prime_UTR 35.0%
AGATATTGATCCAAAGCCAA+GGG + chr1_1:18853389-18853408 Msa0012560:three_prime_UTR 35.0%
! TGGATGCTAGTGTAGATTTT+GGG + chr1_1:18853493-18853512 Msa0012560:three_prime_UTR 35.0%
!! TGCAAAGTATCTGTTGATTC+AGG + chr1_1:18853629-18853648 Msa0012560:three_prime_UTR 35.0%
GGAGAAGTAAAAGTCGTCTA+CGG - chr1_1:18844239-18844258 None:intergenic 40.0%
! AGGAAAAGGATGAAGGGTTT+TGG - chr1_1:18844369-18844388 None:intergenic 40.0%
CCAAGAAGGAAAAGGATGAA+GGG - chr1_1:18844375-18844394 None:intergenic 40.0%
GATGCTACACACGGTAATAA+TGG - chr1_1:18844406-18844425 None:intergenic 40.0%
TCATCGAAGGCTATTGATGT+TGG + chr1_1:18844508-18844527 Msa0012560:CDS 40.0%
CATCATTTGCGAGATTTGTG+CGG + chr1_1:18844567-18844586 Msa0012560:CDS 40.0%
TGTTAGAGCTTGAATCTTGC+AGG + chr1_1:18844731-18844750 Msa0012560:CDS 40.0%
! ATGTTGCTTGATGAGGATGA+AGG + chr1_1:18844859-18844878 Msa0012560:intron 40.0%
TGAATGTGGATGAAAGAGGA+AGG + chr1_1:18844989-18845008 Msa0012560:intron 40.0%
GAATGTGGATGAAAGAGGAA+GGG + chr1_1:18844990-18845009 Msa0012560:intron 40.0%
AGCTGGCTAATAAGAAAAGG+TGG + chr1_1:18845031-18845050 Msa0012560:intron 40.0%
TCAACATAGAACCTGCATCT+TGG - chr1_1:18845066-18845085 None:intergenic 40.0%
GATGTTTGCATATTACGTGC+AGG + chr1_1:18845097-18845116 Msa0012560:intron 40.0%
GAAACCAATCCAAATAGCTC+CGG - chr1_1:18845325-18845344 None:intergenic 40.0%
TAAGGGTGATGTTTGTTTGC+AGG + chr1_1:18845523-18845542 Msa0012560:intron 40.0%
GCAAAATGGACATCTTCTCA+TGG + chr1_1:18845576-18845595 Msa0012560:CDS 40.0%
AAATGGACATCTTCTCATGG+TGG + chr1_1:18845579-18845598 Msa0012560:intron 40.0%
ATCAAGACGTGCATGATTCA+CGG - chr1_1:18845818-18845837 None:intergenic 40.0%
TGGATCTCAATACGGAACAA+TGG - chr1_1:18845899-18845918 None:intergenic 40.0%
GGAAAGGAAGAAACAGAGTA+TGG - chr1_1:18845919-18845938 None:intergenic 40.0%
AAGGACCCTTGTGTAAAAAC+AGG + chr1_1:18846164-18846183 Msa0012560:intron 40.0%
AGGACCCTTGTGTAAAAACA+GGG + chr1_1:18846165-18846184 Msa0012560:intron 40.0%
!!! CCTTACCCTGTTTTTACACA+AGG - chr1_1:18846173-18846192 None:intergenic 40.0%
CCTTGTGTAAAAACAGGGTA+AGG + chr1_1:18846170-18846189 Msa0012560:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_1:18846196-18846215 Msa0012560:intron 40.0%
TACATCCTTCACATTGGAAG+TGG + chr1_1:18846298-18846317 Msa0012560:intron 40.0%
TTTAGCCACTTCCAATGTGA+AGG - chr1_1:18846306-18846325 None:intergenic 40.0%
GAATTCCATGTCGGAATCAT+AGG - chr1_1:18846333-18846352 None:intergenic 40.0%
ACTGAAGCAGAAATCCTAAG+TGG + chr1_1:18846446-18846465 Msa0012560:intron 40.0%
CTGAAGCAGAAATCCTAAGT+GGG + chr1_1:18846447-18846466 Msa0012560:intron 40.0%
TTTCACCAAAAGAAGGGATG+CGG + chr1_1:18846493-18846512 Msa0012560:intron 40.0%
ATGCTATTACTATGGCCGTA+TGG + chr1_1:18846516-18846535 Msa0012560:intron 40.0%
CATATGCAAAAGCTTCAGCT+TGG + chr1_1:18846609-18846628 Msa0012560:intron 40.0%
AGCAAATGGTAAACACACCA+TGG - chr1_1:18846710-18846729 None:intergenic 40.0%
TGGCTTTCTCCTTCTTGATT+TGG - chr1_1:18846736-18846755 None:intergenic 40.0%
AAATCAAGAAGGAGAAAGCC+AGG + chr1_1:18846735-18846754 Msa0012560:intron 40.0%
!! TGTTTTCAGGCGAACCAAAA+TGG - chr1_1:18847439-18847458 None:intergenic 40.0%
AGGCTACCTCACTCAAAAAT+TGG - chr1_1:18847550-18847569 None:intergenic 40.0%
AACTTGTGGAAGAAGACTCT+TGG + chr1_1:18847790-18847809 Msa0012560:intron 40.0%
TACAAGACGCATGACATCTA+TGG + chr1_1:18847817-18847836 Msa0012560:intron 40.0%
CATAGAATAACACGTCTTCC+AGG + chr1_1:18847950-18847969 Msa0012560:intron 40.0%
TACGTGTTCACAGCTCTATT+AGG + chr1_1:18848272-18848291 Msa0012560:intron 40.0%
ACGTGTTCACAGCTCTATTA+GGG + chr1_1:18848273-18848292 Msa0012560:intron 40.0%
CCCAAAAGTTGTCACCAAAA+TGG - chr1_1:18848812-18848831 None:intergenic 40.0%
TTTGAAAGAAGGAGTAGTCG+TGG + chr1_1:18849144-18849163 Msa0012560:intron 40.0%
TTGAAAGAAGGAGTAGTCGT+GGG + chr1_1:18849145-18849164 Msa0012560:intron 40.0%
AGTTTGATGTGACAAAGGGA+GGG + chr1_1:18849390-18849409 Msa0012560:intron 40.0%
GTTGAATCTGCAAGCAGATA+TGG + chr1_1:18849916-18849935 Msa0012560:intron 40.0%
CATGAAACAAACCATGTGAG+TGG + chr1_1:18850095-18850114 Msa0012560:intron 40.0%
TGAAACAAACCATGTGAGTG+GGG + chr1_1:18850097-18850116 Msa0012560:intron 40.0%
! GCACAAGCAAACTCTCTTTT+TGG - chr1_1:18850140-18850159 None:intergenic 40.0%
AATCTAAAAGATCGCCGACA+AGG + chr1_1:18850184-18850203 Msa0012560:intron 40.0%
ATCTAAAAGATCGCCGACAA+GGG + chr1_1:18850185-18850204 Msa0012560:intron 40.0%
GCGTGGAATGAAAAGAGAAT+AGG + chr1_1:18850220-18850239 Msa0012560:intron 40.0%
! AAACAGGTTGAACAGGTTTC+AGG - chr1_1:18850664-18850683 None:intergenic 40.0%
! TGTTTGGAAACAGGTTGAAC+AGG - chr1_1:18850671-18850690 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr1_1:18851225-18851244 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr1_1:18851225-18851244 Msa0012560:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr1_1:18851226-18851245 Msa0012560:intron 40.0%
! TGACTTGAAATAGTGGGAAG+TGG + chr1_1:18851587-18851606 Msa0012560:intron 40.0%
! TATCTGGTGTCAATTTGAGC+GGG - chr1_1:18852099-18852118 None:intergenic 40.0%
! CTATCTGGTGTCAATTTGAG+CGG - chr1_1:18852100-18852119 None:intergenic 40.0%
GTCTCATATTGGACTCTATC+TGG - chr1_1:18852115-18852134 None:intergenic 40.0%
GAGTCCAATATGAGACATTG+AGG + chr1_1:18852119-18852138 Msa0012560:intron 40.0%
AATGCCTTTGATGCAACAAG+CGG - chr1_1:18852243-18852262 None:intergenic 40.0%
ATGTTGCTCAACTTCAACTC+TGG - chr1_1:18852315-18852334 None:intergenic 40.0%
TTCACCCAAAACTTGGCATT+GGG - chr1_1:18852360-18852379 None:intergenic 40.0%
AGACTGCATTGCCTTATGTT+GGG - chr1_1:18852439-18852458 None:intergenic 40.0%
TAGACTGCATTGCCTTATGT+TGG - chr1_1:18852440-18852459 None:intergenic 40.0%
AACCTCTGACATAAGTTTGC+GGG - chr1_1:18852722-18852741 None:intergenic 40.0%
GTGGTTGCAAAGTTTGACTA+TGG + chr1_1:18852854-18852873 Msa0012560:intron 40.0%
GTGTATACAATTGCACTGCT+TGG + chr1_1:18852938-18852957 Msa0012560:intron 40.0%
GTTCTTCTCCTATCCTATTC+AGG + chr1_1:18853081-18853100 Msa0012560:intron 40.0%
CTCGTTTCACTTTCCTGAAT+AGG - chr1_1:18853097-18853116 None:intergenic 40.0%
TGAGACACGTTCACAAAAGA+CGG - chr1_1:18853168-18853187 None:intergenic 40.0%
! GTAGAGCATTATACTGGTGA+AGG + chr1_1:18853201-18853220 Msa0012560:three_prime_UTR 40.0%
TTATACTGGTGAAGGAAGTG+TGG + chr1_1:18853209-18853228 Msa0012560:three_prime_UTR 40.0%
!! AACCGCAATTTAGTTCTGCT+AGG - chr1_1:18853333-18853352 None:intergenic 40.0%
AGCAGAACTAAATTGCGGTT+CGG + chr1_1:18853333-18853352 Msa0012560:three_prime_UTR 40.0%
GAGATATTGATCCAAAGCCA+AGG + chr1_1:18853388-18853407 Msa0012560:three_prime_UTR 40.0%
!! TTTTGGCTGTCAGATCTCAA+AGG + chr1_1:18853446-18853465 Msa0012560:three_prime_UTR 40.0%
! GTGGATGCTAGTGTAGATTT+TGG + chr1_1:18853492-18853511 Msa0012560:three_prime_UTR 40.0%
!!! GCTAGTGTAGATTTTGGGAT+TGG + chr1_1:18853498-18853517 Msa0012560:three_prime_UTR 40.0%
! TTGGGATTGGTATGAGAAAG+TGG + chr1_1:18853511-18853530 Msa0012560:three_prime_UTR 40.0%
! TACTTTGCAGTTTTACCCTG+TGG - chr1_1:18853618-18853637 None:intergenic 40.0%
! AAAAGTCGTCTACGGTGTCA+AGG - chr1_1:18844231-18844250 None:intergenic 45.0%
TGCTTCAGCGTACTTGTCAT+CGG - chr1_1:18844302-18844321 None:intergenic 45.0%
AGTGATGACAGAGGCCAATA+AGG - chr1_1:18844341-18844360 None:intergenic 45.0%
TTGGTGAGAAGTGATGACAG+AGG - chr1_1:18844350-18844369 None:intergenic 45.0%
! CCCTTCATCCTTTTCCTTCT+TGG + chr1_1:18844372-18844391 Msa0012560:CDS 45.0%
GCCAAGAAGGAAAAGGATGA+AGG - chr1_1:18844376-18844395 None:intergenic 45.0%
ACACACGGTAATAATGGTGG+TGG - chr1_1:18844400-18844419 None:intergenic 45.0%
GCTACACACGGTAATAATGG+TGG - chr1_1:18844403-18844422 None:intergenic 45.0%
TGCGGAAACAAAAAGGACTG+AGG + chr1_1:18844585-18844604 Msa0012560:CDS 45.0%
AAAGGACTGAGGAGATGTTC+AGG + chr1_1:18844596-18844615 Msa0012560:intron 45.0%
! TTGTCCTGGTTTGAACTGCA+AGG + chr1_1:18844705-18844724 Msa0012560:CDS 45.0%
! TGTCCTGGTTTGAACTGCAA+GGG + chr1_1:18844706-18844725 Msa0012560:CDS 45.0%
GTGGAATGATGCATTGTGTG+AGG + chr1_1:18844783-18844802 Msa0012560:CDS 45.0%
AAGGGAAGATCTCCTTGTGA+GGG + chr1_1:18845008-18845027 Msa0012560:intron 45.0%
GGGAGCTGGCTAATAAGAAA+AGG + chr1_1:18845028-18845047 Msa0012560:intron 45.0%
TGTCTTGGCATTCATTTGGC+CGG + chr1_1:18845303-18845322 Msa0012560:intron 45.0%
TTCATTTGGCCGGAGCTATT+TGG + chr1_1:18845313-18845332 Msa0012560:intron 45.0%
TAAGGAACTTCCCCTATCCA+TGG - chr1_1:18845671-18845690 None:intergenic 45.0%
GGGAAAGAAGAAGTAGCAGA+AGG - chr1_1:18845978-18845997 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_1:18846192-18846211 Msa0012560:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_1:18846195-18846214 Msa0012560:intron 45.0%
AGAGTCCTATGATTCCGACA+TGG + chr1_1:18846325-18846344 Msa0012560:intron 45.0%
GATTCCGACATGGAATTCGA+CGG + chr1_1:18846335-18846354 Msa0012560:intron 45.0%
GGATGCGGATGCTATTACTA+TGG + chr1_1:18846508-18846527 Msa0012560:intron 45.0%
CTCTTTCCTTAGGGACCATA+CGG - chr1_1:18846534-18846553 None:intergenic 45.0%
ACTCCTTGCCTCTTTCCTTA+GGG - chr1_1:18846543-18846562 None:intergenic 45.0%
AACTCCTTGCCTCTTTCCTT+AGG - chr1_1:18846544-18846563 None:intergenic 45.0%
TAAGGAAAGAGGCAAGGAGT+TGG + chr1_1:18846543-18846562 Msa0012560:intron 45.0%
! GCAAGGAGTTGGTTCAATGA+CGG + chr1_1:18846554-18846573 Msa0012560:intron 45.0%
GATGAGGATGCATTTGAGCA+TGG + chr1_1:18846757-18846776 Msa0012560:intron 45.0%
TGGAACAAAGTTTCAGTCGC+AGG + chr1_1:18846777-18846796 Msa0012560:intron 45.0%
CTTCGACTTCGAGTAAAGTG+AGG - chr1_1:18847570-18847589 None:intergenic 45.0%
CGTGTTCACAGCTCTATTAG+GGG + chr1_1:18848274-18848293 Msa0012560:intron 45.0%
TATGCAACAAGGAGTAGTCG+TGG + chr1_1:18849106-18849125 Msa0012560:intron 45.0%
ATGCAACAAGGAGTAGTCGT+GGG + chr1_1:18849107-18849126 Msa0012560:intron 45.0%
GCGACACGATTAAAGTGACT+AGG - chr1_1:18849273-18849292 None:intergenic 45.0%
GAGTTTGATGTGACAAAGGG+AGG + chr1_1:18849389-18849408 Msa0012560:intron 45.0%
! GAGGGCCCTCCTTAATTTTA+AGG + chr1_1:18850003-18850022 Msa0012560:intron 45.0%
!! AATTGTTAGGGAGGGTACTG+TGG - chr1_1:18850045-18850064 None:intergenic 45.0%
GAAACAAACCATGTGAGTGG+GGG + chr1_1:18850098-18850117 Msa0012560:intron 45.0%
TCTAAAAGATCGCCGACAAG+GGG + chr1_1:18850186-18850205 Msa0012560:intron 45.0%
GAATAGGGAGAGGATAAAGC+TGG + chr1_1:18850236-18850255 Msa0012560:intron 45.0%
GCATTATTATATGCAGGGGC+CGG + chr1_1:18850891-18850910 Msa0012560:intron 45.0%
TAGCTACTAGGCTACCTAGA+GGG + chr1_1:18850961-18850980 Msa0012560:intron 45.0%
!! ATAAGTTGGTCTACTCCCTC+CGG - chr1_1:18851244-18851263 None:intergenic 45.0%
GACTTTCTTGCTCTCTTTCC+CGG + chr1_1:18851648-18851667 Msa0012560:intron 45.0%
GGATGAGCACACTTCATCTA+AGG + chr1_1:18852140-18852159 Msa0012560:intron 45.0%
! TGATTTTCCGCAACCCACTT+GGG - chr1_1:18852191-18852210 None:intergenic 45.0%
!! AAGTGGGTTGCGGAAAATCA+CGG + chr1_1:18852191-18852210 Msa0012560:intron 45.0%
! ATGTCCGCTTGTTGCATCAA+AGG + chr1_1:18852236-18852255 Msa0012560:intron 45.0%
TGTGAGTTAAGGTCTCACGT+GGG + chr1_1:18852285-18852304 Msa0012560:intron 45.0%
CTTCACCCAAAACTTGGCAT+TGG - chr1_1:18852361-18852380 None:intergenic 45.0%
CCACATCTTCACCCAAAACT+TGG - chr1_1:18852367-18852386 None:intergenic 45.0%
!!! CCAAGTTTTGGGTGAAGATG+TGG + chr1_1:18852364-18852383 Msa0012560:intron 45.0%
!! GGTGTTGATTCTCACTTGTG+TGG + chr1_1:18852385-18852404 Msa0012560:intron 45.0%
TGCCTTATGTTGGGCCATAA+GGG - chr1_1:18852430-18852449 None:intergenic 45.0%
TTGCCTTATGTTGGGCCATA+AGG - chr1_1:18852431-18852450 None:intergenic 45.0%
TTAGTTTCCTGAAAGACGGC+AGG + chr1_1:18852743-18852762 Msa0012560:intron 45.0%
TAGTTTCCTGAAAGACGGCA+GGG + chr1_1:18852744-18852763 Msa0012560:intron 45.0%
AGTGAAACGAGTTAGCATCG+AGG + chr1_1:18853106-18853125 Msa0012560:exon 45.0%
! AAACGAGTTAGCATCGAGGA+TGG + chr1_1:18853110-18853129 Msa0012560:exon 45.0%
! AACGAGTTAGCATCGAGGAT+GGG + chr1_1:18853111-18853130 Msa0012560:three_prime_UTR 45.0%
GAGACACGTTCACAAAAGAC+GGG - chr1_1:18853167-18853186 None:intergenic 45.0%
GCAGAACTAAATTGCGGTTC+GGG + chr1_1:18853334-18853353 Msa0012560:three_prime_UTR 45.0%
AAACTGTCCAAGAATGCCCT+TGG - chr1_1:18853408-18853427 None:intergenic 45.0%
ATTGAGCTGCATCAACCACA+GGG + chr1_1:18853600-18853619 Msa0012560:three_prime_UTR 45.0%
!!! AAATATATATTCAAATATTT+TGG + chr1_1:18847481-18847500 Msa0012560:intron 5.0%
!! AATATATTTATATAGTTTAT+GGG - chr1_1:18848420-18848439 None:intergenic 5.0%
!! TAATATATTTATATAGTTTA+TGG - chr1_1:18848421-18848440 None:intergenic 5.0%
!!! TTTTTTTTTTATTGAAATAA+AGG + chr1_1:18849448-18849467 Msa0012560:intron 5.0%
!! ATTATTTATTATTATTGTAT+TGG + chr1_1:18851540-18851559 Msa0012560:intron 5.0%
AGGTCAAGGAATGAGGAGGA+TGG - chr1_1:18844211-18844230 None:intergenic 50.0%
GTCAAGGTCAAGGAATGAGG+AGG - chr1_1:18844215-18844234 None:intergenic 50.0%
GGTGTCAAGGTCAAGGAATG+AGG - chr1_1:18844218-18844237 None:intergenic 50.0%
CGTACTTGTCATCGGAGACA+GGG - chr1_1:18844294-18844313 None:intergenic 50.0%
! TGGTGGTGCCAAGAAGGAAA+AGG - chr1_1:18844383-18844402 None:intergenic 50.0%
!! TAATGGTGGTGGTGCCAAGA+AGG - chr1_1:18844389-18844408 None:intergenic 50.0%
GAAGATGCTACGCAGTGCAA+TGG - chr1_1:18844490-18844509 None:intergenic 50.0%
CTGCGTAGCATCTTCATCGA+AGG + chr1_1:18844495-18844514 Msa0012560:CDS 50.0%
ACACCCTTGCAGTTCAAACC+AGG - chr1_1:18844712-18844731 None:intergenic 50.0%
GTGCAAGCTGTCATGTCACT+TGG + chr1_1:18844932-18844951 Msa0012560:intron 50.0%
! TGTCATGTCACTTGGCATCC+TGG + chr1_1:18844940-18844959 Msa0012560:intron 50.0%
! GTCATGTCACTTGGCATCCT+GGG + chr1_1:18844941-18844960 Msa0012560:intron 50.0%
! TCATGTCACTTGGCATCCTG+GGG + chr1_1:18844942-18844961 Msa0012560:intron 50.0%
GAAGGGAAGATCTCCTTGTG+AGG + chr1_1:18845007-18845026 Msa0012560:intron 50.0%
TATTAGCCAGCTCCCTCACA+AGG - chr1_1:18845023-18845042 None:intergenic 50.0%
!! GGAAAAGGTGTCCAAGATGC+AGG + chr1_1:18845052-18845071 Msa0012560:intron 50.0%
TTGGCCGGAGCTATTTGGAT+TGG + chr1_1:18845318-18845337 Msa0012560:intron 50.0%
GCTATGCTTGCGGTGCAAAA+TGG + chr1_1:18845562-18845581 Msa0012560:CDS 50.0%
AGAGCCGTCGAATTCCATGT+CGG - chr1_1:18846342-18846361 None:intergenic 50.0%
CATGGAATTCGACGGCTCTA+TGG + chr1_1:18846343-18846362 Msa0012560:intron 50.0%
! CGACGGCTCTATGGATTATG+TGG + chr1_1:18846352-18846371 Msa0012560:intron 50.0%
! AGCATCCGCATCCCTTCTTT+TGG - chr1_1:18846501-18846520 None:intergenic 50.0%
CGTATGGTCCCTAAGGAAAG+AGG + chr1_1:18846532-18846551 Msa0012560:intron 50.0%
! AGGAGTTGGTTCAATGACGG+TGG + chr1_1:18846557-18846576 Msa0012560:intron 50.0%
! GGAGTTGGTTCAATGACGGT+GGG + chr1_1:18846558-18846577 Msa0012560:intron 50.0%
! GAGTTGGTTCAATGACGGTG+GGG + chr1_1:18846559-18846578 Msa0012560:intron 50.0%
AGAAGGAGAAAGCCAGGATG+AGG + chr1_1:18846741-18846760 Msa0012560:intron 50.0%
GCTCAAATGCATCCTCATCC+TGG - chr1_1:18846756-18846775 None:intergenic 50.0%
AAGAAGGAGTAGTCGTGGGT+TGG + chr1_1:18849149-18849168 Msa0012560:intron 50.0%
TTGATGTGACAAAGGGAGGG+AGG + chr1_1:18849393-18849412 Msa0012560:intron 50.0%
TGATGTGACAAAGGGAGGGA+GGG + chr1_1:18849394-18849413 Msa0012560:intron 50.0%
ATAGGTATCCCCCACTCACA+TGG - chr1_1:18850109-18850128 None:intergenic 50.0%
CTAAAAGATCGCCGACAAGG+GGG + chr1_1:18850187-18850206 Msa0012560:intron 50.0%
CTAGCTACTAGGCTACCTAG+AGG + chr1_1:18850960-18850979 Msa0012560:intron 50.0%
TCTCTTTCCCGGATTCCTCA+AGG + chr1_1:18851659-18851678 Msa0012560:intron 50.0%
ATCATCACCGACAGACCTTG+AGG - chr1_1:18851677-18851696 None:intergenic 50.0%
! GTGATTTTCCGCAACCCACT+TGG - chr1_1:18852192-18852211 None:intergenic 50.0%
GTGTGAGTTAAGGTCTCACG+TGG + chr1_1:18852284-18852303 Msa0012560:intron 50.0%
AAGGGGGAGTTTCACTGGAT+TGG - chr1_1:18852412-18852431 None:intergenic 50.0%
TCCAGTGAAACTCCCCCTTA+TGG + chr1_1:18852413-18852432 Msa0012560:intron 50.0%
CCTTATGTTGGGCCATAAGG+GGG - chr1_1:18852428-18852447 None:intergenic 50.0%
GCCTTATGTTGGGCCATAAG+GGG - chr1_1:18852429-18852448 None:intergenic 50.0%
! ATAAGTTTGCGGGCTGCAGA+TGG - chr1_1:18852712-18852731 None:intergenic 50.0%
AGCCCGCAAACTTATGTCAG+AGG + chr1_1:18852717-18852736 Msa0012560:intron 50.0%
!! TCCAAAGCCAAGGGCATTCT+TGG + chr1_1:18853398-18853417 Msa0012560:three_prime_UTR 50.0%
TCCAAGAATGCCCTTGGCTT+TGG - chr1_1:18853402-18853421 None:intergenic 50.0%
GATTGAGCTGCATCAACCAC+AGG + chr1_1:18853599-18853618 Msa0012560:three_prime_UTR 50.0%
! CGTCTACGGTGTCAAGGTCA+AGG - chr1_1:18844225-18844244 None:intergenic 55.0%
CATCGGAGACAGGGACGTTA+GGG - chr1_1:18844285-18844304 None:intergenic 55.0%
TCATCGGAGACAGGGACGTT+AGG - chr1_1:18844286-18844305 None:intergenic 55.0%
GCGTACTTGTCATCGGAGAC+AGG - chr1_1:18844295-18844314 None:intergenic 55.0%
!! TGGTGGTGGTGACGGCATAA+GGG - chr1_1:18844470-18844489 None:intergenic 55.0%
!! ATGGTGGTGGTGACGGCATA+AGG - chr1_1:18844471-18844490 None:intergenic 55.0%
!! CAGTGCAATGGTGGTGGTGA+CGG - chr1_1:18844478-18844497 None:intergenic 55.0%
GATGCTACGCAGTGCAATGG+TGG - chr1_1:18844487-18844506 None:intergenic 55.0%
AACTCCTCACAACCAACCCC+AGG - chr1_1:18844961-18844980 None:intergenic 55.0%
AGATCTCCTTGTGAGGGAGC+TGG + chr1_1:18845014-18845033 Msa0012560:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG - chr1_1:18846235-18846254 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG - chr1_1:18846236-18846255 None:intergenic 55.0%
CTATGGCCGTATGGTCCCTA+AGG + chr1_1:18846525-18846544 Msa0012560:intron 55.0%
GGTCCCTAAGGAAAGAGGCA+AGG + chr1_1:18846537-18846556 Msa0012560:intron 55.0%
GTGGGGCTGATGCAGATTCT+GGG + chr1_1:18846576-18846595 Msa0012560:intron 55.0%
! AAAGGGAGGGAGGGAGGTTT+TGG + chr1_1:18849403-18849422 Msa0012560:intron 55.0%
! AAGGGAGGGAGGGAGGTTTT+GGG + chr1_1:18849404-18849423 Msa0012560:intron 55.0%
GGGAGAGGATAAAGCTGGAC+AGG + chr1_1:18850241-18850260 Msa0012560:intron 55.0%
! GATGTCTGGGGTTCGAACTC+CGG - chr1_1:18850913-18850932 None:intergenic 55.0%
CGACAGACCTTGAGGAATCC+GGG - chr1_1:18851669-18851688 None:intergenic 55.0%
CCGACAGACCTTGAGGAATC+CGG - chr1_1:18851670-18851689 None:intergenic 55.0%
CCGGATTCCTCAAGGTCTGT+CGG + chr1_1:18851667-18851686 Msa0012560:intron 55.0%
GGTCTGTCGGTGATGATCGT+CGG + chr1_1:18851680-18851699 Msa0012560:intron 55.0%
!! TTGGGTTAGCCTCGTGGTGT+TGG - chr1_1:18852173-18852192 None:intergenic 55.0%
ACCACGAGGCTAACCCAAGT+GGG + chr1_1:18852175-18852194 Msa0012560:intron 55.0%
!! AGGCTAACCCAAGTGGGTTG+CGG + chr1_1:18852181-18852200 Msa0012560:intron 55.0%
GCCATAAGGGGGAGTTTCAC+TGG - chr1_1:18852417-18852436 None:intergenic 55.0%
CCCCCTTATGGCCCAACATA+AGG + chr1_1:18852425-18852444 Msa0012560:intron 55.0%
GCTACGCAGTGCAATGGTGG+TGG - chr1_1:18844484-18844503 None:intergenic 60.0%
GTCACTTGGCATCCTGGGGT+TGG + chr1_1:18844946-18844965 Msa0012560:intron 60.0%
!! GCATCCTGGGGTTGGTTGTG+AGG + chr1_1:18844954-18844973 Msa0012560:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_1:18846208-18846227 Msa0012560:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr1_1:18846223-18846242 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr1_1:18846224-18846243 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr1_1:18846223-18846242 Msa0012560:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr1_1:18846224-18846243 Msa0012560:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr1_1:18846240-18846259 Msa0012560:intron 60.0%
GGTGGGGCTGATGCAGATTC+TGG + chr1_1:18846575-18846594 Msa0012560:intron 60.0%
TGTGACAAAGGGAGGGAGGG+AGG + chr1_1:18849397-18849416 Msa0012560:intron 60.0%
!!! AGGGAGGGAGGTTTTGGGAG+AGG + chr1_1:18849409-18849428 Msa0012560:intron 60.0%
CTGTCGTCGTCGTCAACGTG+AGG - chr1_1:18851629-18851648 None:intergenic 60.0%
GGTCTCAAGCCAACACCACG+AGG + chr1_1:18852161-18852180 Msa0012560:intron 60.0%
CACCACGAGGCTAACCCAAG+TGG + chr1_1:18852174-18852193 Msa0012560:intron 60.0%
!! ACCCACTTGGGTTAGCCTCG+TGG - chr1_1:18852179-18852198 None:intergenic 60.0%
GTGTGACCCTGCCGTCTTTC+AGG - chr1_1:18852753-18852772 None:intergenic 60.0%
AAAGACGGCAGGGTCACACC+TGG + chr1_1:18852754-18852773 Msa0012560:intron 60.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1_1:18846210-18846229 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr1_1:18846225-18846244 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr1_1:18846229-18846248 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr1_1:18846230-18846249 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr1_1:18846241-18846260 Msa0012560:intron 65.0%
AGATCGCCGACAAGGGGGAG+TGG + chr1_1:18850192-18850211 Msa0012560:intron 65.0%
CCTGCTCCACTCCCCCTTGT+CGG - chr1_1:18850201-18850220 None:intergenic 65.0%
CCGACAAGGGGGAGTGGAGC+AGG + chr1_1:18850198-18850217 Msa0012560:intron 70.0%
AAGGGGGAGTGGAGCAGGCG+TGG + chr1_1:18850203-18850222 Msa0012560:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18844196 18853656 18844196 ID=Msa0012560;Name=Msa0012560
chr1_1 mRNA 18844196 18853656 18844196 ID=Msa0012560-mRNA-1;Parent=Msa0012560;Name=Msa0012560-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0.2|1|0|0|5|546|226
chr1_1 exon 18844196 18844438 18844196 ID=Msa0012560-mRNA-1:exon:6963;Parent=Msa0012560-mRNA-1
chr1_1 exon 18844457 18844611 18844457 ID=Msa0012560-mRNA-1:exon:6964;Parent=Msa0012560-mRNA-1
chr1_1 exon 18844618 18844839 18844618 ID=Msa0012560-mRNA-1:exon:6965;Parent=Msa0012560-mRNA-1
chr1_1 exon 18845545 18845597 18845545 ID=Msa0012560-mRNA-1:exon:6966;Parent=Msa0012560-mRNA-1
chr1_1 exon 18853103 18853656 18853103 ID=Msa0012560-mRNA-1:exon:6967;Parent=Msa0012560-mRNA-1
chr1_1 CDS 18844196 18844438 18844196 ID=Msa0012560-mRNA-1:cds;Parent=Msa0012560-mRNA-1
chr1_1 CDS 18844457 18844611 18844457 ID=Msa0012560-mRNA-1:cds;Parent=Msa0012560-mRNA-1
chr1_1 CDS 18844618 18844839 18844618 ID=Msa0012560-mRNA-1:cds;Parent=Msa0012560-mRNA-1
chr1_1 CDS 18845545 18845597 18845545 ID=Msa0012560-mRNA-1:cds;Parent=Msa0012560-mRNA-1
chr1_1 CDS 18853103 18853110 18853103 ID=Msa0012560-mRNA-1:cds;Parent=Msa0012560-mRNA-1
chr1_1 three_prime_UTR 18853111 18853656 18853111 ID=Msa0012560-mRNA-1:three_prime_utr;Parent=Msa0012560-mRNA-1
Gene Sequence

>Msa0012560

ATGGCGCAACAACCATCCTCCTCATTCCTTGACCTTGACACCGTAGACGACTTTTACTTCTCCGTTGTCTCCGACAATGAAATTGACCCTAACGTCCCTGTCTCCGATGACAAGTACGCTGAAGCATTACAGTTGCAAGAAACCTTATTGGCCTCTGTCATCACTTCTCACCAAAACCCTTCATCCTTTTCCTTCTTGGCACCACCACCATTATTACCGTGTGTAGCATCTTCATCAAAAACATTTCATCAAACCCTTATGCCGTCACCACCACCATTGCACTGCGTAGCATCTTCATCGAAGGCTATTGATGTTGGCATTGTCTTCAAAGCTGATGAACAGTCTTCTCCGATCATCATTTGCGAGATTTGTGCGGAAACAAAAAGGACTGAGGAGATGAATCAAATATGTTACCATTCATTTTGTTCTGAATGTGTTGTCAAACAAGTGGCTACAAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAGGGTGTGTTAGAGCTTGAATCTTGCAGGTCATTGCTTCCAAAAGAGTTGATTGATAGGTGGAATGATGCATTGTGTGAGGCTTTTATTCTTGCTGTTCCTAAGTTCTATTGCCCGTGCAAATTTGAGTTTTGCTATGCTTGCGGTGCAAAATGGACATCTTCTCATGGAAAGTGA
Protein sequence

>Msa0012560

MAQQPSSSFLDLDTVDDFYFSVVSDNEIDPNVPVSDDKYAEALQLQETLLASVITSHQNPSSFSFLAPPPLLPCVASSSKTFHQTLMPSPPPLHCVASSSKAIDVGIVFKADEQSSPIIICEICAETKRTEEMNQICYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGVLELESCRSLLPKELIDRWNDALCEAFILAVPKFYCPCKFEFCYACGAKWTSSHGK*