Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115820 | AES62991.1 | 91.489 | 376 | 27 | 2 | 1 | 376 | 34 | 404 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115820 | sp|Q8VZR0|RIBF2_ARATH | 61.130 | 301 | 113 | 3 | 72 | 372 | 71 | 367 | 3.26e-126 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115820 | G7IEA6 | 91.489 | 376 | 27 | 2 | 1 | 376 | 34 | 404 | 0.0 | 703 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115820 | Msa1028460 | 0.801248 | 9.849555e-49 | -8.615850e-47 |
| Msa0115820 | Msa1125780 | 0.802663 | 5.041121e-49 | -8.615850e-47 |
| Msa0115820 | Msa1125950 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0115820 | Msa1171340 | 0.806487 | 8.032561e-50 | -8.615850e-47 |
| Msa0115820 | Msa1210640 | 0.817860 | 2.648892e-52 | -8.615850e-47 |
| Msa0115820 | Msa1262310 | 0.804935 | 1.700899e-49 | -8.615850e-47 |
| Msa0115820 | Msa1299160 | 0.817462 | 3.257020e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115820 | MtrunA17_Chr1g0212021 | 91.489 | 376 | 27 | 2 | 1 | 376 | 1 | 371 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115820 | AT5G08340.1 | 61.130 | 301 | 113 | 3 | 72 | 372 | 71 | 367 | 3.31e-127 | 370 |
| Msa0115820 | AT5G08340.2 | 64.643 | 280 | 95 | 3 | 72 | 351 | 71 | 346 | 5.54e-126 | 367 |
| Msa0115820 | AT5G23330.1 | 61.168 | 291 | 111 | 2 | 83 | 372 | 65 | 354 | 3.45e-123 | 360 |
Find 84 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATATGTCTCAGAGCTTT+TGG | 0.197621 | 1_3:-34722845 | Msa0115820:CDS |
| TTTGAAGGCATAATGCATTA+AGG | 0.236796 | 1_3:+34722412 | None:intergenic |
| AACTCAATCTCAAACTCTTC+TGG | 0.241600 | 1_3:+34723339 | None:intergenic |
| CAGTACTTGCATATTGAATT+TGG | 0.253783 | 1_3:-34722577 | Msa0115820:CDS |
| AGATTCAATAAGCATGATTT+AGG | 0.264654 | 1_3:+34722748 | None:intergenic |
| CGAGACCTGGCCCCTCTCTT+TGG | 0.273632 | 1_3:+34722906 | None:intergenic |
| CGCCGTAATCTGTTTCTATA+TGG | 0.276226 | 1_3:+34722632 | None:intergenic |
| TCGATCACATTTAGCGACTA+TGG | 0.286199 | 1_3:+34723407 | None:intergenic |
| AAGAATAGCATTTGTTTGAT+TGG | 0.288062 | 1_3:+34725159 | None:intergenic |
| GTTGGCATGGCTAAGGTATT+TGG | 0.295852 | 1_3:-34724762 | Msa0115820:CDS |
| ACAACATCGTCTTGTATTAA+TGG | 0.318588 | 1_3:-34722818 | Msa0115820:CDS |
| ATTCAGCTTTAGCCAGTATA+AGG | 0.322211 | 1_3:-34722779 | Msa0115820:CDS |
| TATTCTTCTAAGTCTTCTTC+TGG | 0.333512 | 1_3:-34725143 | Msa0115820:CDS |
| TGAGGATGCGGAGGAGGAAT+TGG | 0.368189 | 1_3:-34725345 | None:intergenic |
| CATAATGCATTAAGGGGAAA+AGG | 0.376083 | 1_3:+34722420 | None:intergenic |
| CCTCTCTTTGGAGCCAGTAC+TGG | 0.378348 | 1_3:+34722918 | None:intergenic |
| AAGAAAATGTTATGCTATGT+AGG | 0.384809 | 1_3:-34722678 | Msa0115820:CDS |
| AAAGCGCGTTCTTTCATCTT+GGG | 0.389450 | 1_3:-34723385 | Msa0115820:CDS |
| GGGACCATGTTACCACAATA+AGG | 0.395963 | 1_3:+34723360 | None:intergenic |
| AGAGTGCGTGGAGTTGTTGC+AGG | 0.404410 | 1_3:-34723258 | Msa0115820:intron |
| TTCTCATATAAACCTTCCTT+TGG | 0.405100 | 1_3:+34722721 | None:intergenic |
| CCAACAAATGATAAAAGAAA+TGG | 0.405504 | 1_3:+34724780 | None:intergenic |
| TAGGAGCAGACACCTTATAC+TGG | 0.407488 | 1_3:+34722767 | None:intergenic |
| TTGAAGGCATAATGCATTAA+GGG | 0.411564 | 1_3:+34722413 | None:intergenic |
| ACTCAATCTCAAACTCTTCT+GGG | 0.412465 | 1_3:+34723340 | None:intergenic |
| ATCCATATAGAAACAGATTA+CGG | 0.418116 | 1_3:-34722634 | Msa0115820:CDS |
| CATGGCTAAGGTATTTGGTT+GGG | 0.420470 | 1_3:-34724757 | Msa0115820:CDS |
| AAGATTTGAGGATGCGGAGG+AGG | 0.425061 | 1_3:-34725351 | None:intergenic |
| TTACATAATAAAATCTGTTA+TGG | 0.427036 | 1_3:-34722971 | Msa0115820:CDS |
| GCAGGTGAGAACTACCGATT+TGG | 0.429036 | 1_3:-34723057 | Msa0115820:intron |
| GAAAGCGCGTTCTTTCATCT+TGG | 0.448349 | 1_3:-34723386 | Msa0115820:CDS |
| GCTATGTGAGGAGTATGAAA+TGG | 0.449882 | 1_3:-34722998 | Msa0115820:CDS |
| CCAGGTGGAATTGTAGCATT+GGG | 0.455534 | 1_3:-34724867 | Msa0115820:intron |
| TCTTCTTCTGGAGGAGGAGG+AGG | 0.455918 | 1_3:-34725131 | Msa0115820:CDS |
| TCATCTTGGGTTCCTTATTG+TGG | 0.457058 | 1_3:-34723372 | Msa0115820:CDS |
| TCTAAGTCTTCTTCTGGAGG+AGG | 0.458499 | 1_3:-34725137 | Msa0115820:CDS |
| CGATCACATTTAGCGACTAT+GGG | 0.461216 | 1_3:+34723408 | None:intergenic |
| GCCAGGTGGAATTGTAGCAT+TGG | 0.463776 | 1_3:-34724868 | Msa0115820:intron |
| CTCCTACAGCAAGCGCTTCG+CGG | 0.464279 | 1_3:+34722872 | None:intergenic |
| ATCATTTGTTGGCATGGCTA+AGG | 0.464451 | 1_3:-34724769 | Msa0115820:CDS |
| AGGTATTTGGTTGGGAACAT+AGG | 0.464902 | 1_3:-34724749 | Msa0115820:intron |
| GAACTTCTCCACTTTGGTGT+TGG | 0.472395 | 1_3:-34725272 | Msa0115820:CDS |
| ATCTAAACTGAATCAAGTAC+TGG | 0.481551 | 1_3:+34722549 | None:intergenic |
| CAGATGATTCTTATATGTCC+CGG | 0.482630 | 1_3:-34722491 | Msa0115820:three_prime_UTR |
| CAGCTGCTTTATATCCAAAT+CGG | 0.493817 | 1_3:+34723043 | None:intergenic |
| GATTGTGAACTTCTCCACTT+TGG | 0.502128 | 1_3:-34725278 | Msa0115820:CDS |
| ATAATGCATTAAGGGGAAAA+GGG | 0.514224 | 1_3:+34722421 | None:intergenic |
| AACTTGCAATTCAAGCATCA+AGG | 0.520418 | 1_3:-34724812 | Msa0115820:CDS |
| TCTTCTAAGTCTTCTTCTGG+AGG | 0.523392 | 1_3:-34725140 | Msa0115820:CDS |
| GCATGGCTAAGGTATTTGGT+TGG | 0.524252 | 1_3:-34724758 | Msa0115820:CDS |
| AGCACCGAAAGAAGGTTTGA+GGG | 0.524377 | 1_3:+34725211 | None:intergenic |
| GGTTCCTTATTGTGGTAACA+TGG | 0.524947 | 1_3:-34723364 | Msa0115820:CDS |
| AAGTCTTCTTCTGGAGGAGG+AGG | 0.524961 | 1_3:-34725134 | Msa0115820:CDS |
| CGATTTGGATATAAAGCAGC+TGG | 0.526419 | 1_3:-34723042 | Msa0115820:CDS |
| TAGCACCGAAAGAAGGTTTG+AGG | 0.537318 | 1_3:+34725210 | None:intergenic |
| TGAAGGCATAATGCATTAAG+GGG | 0.539457 | 1_3:+34722414 | None:intergenic |
| AGAAAATGTTATGCTATGTA+GGG | 0.539473 | 1_3:-34722677 | Msa0115820:CDS |
| CTACTATTAGCACCGAAAGA+AGG | 0.541555 | 1_3:+34725203 | None:intergenic |
| CTTATTGAATCTAGCACCAA+AGG | 0.542329 | 1_3:-34722737 | Msa0115820:CDS |
| AGATGATTCTTATATGTCCC+GGG | 0.543859 | 1_3:-34722490 | Msa0115820:three_prime_UTR |
| GACGGAATATCTGCAGTCAC+AGG | 0.563009 | 1_3:-34724965 | Msa0115820:intron |
| GCAATTCAAGCATCAAGGGC+TGG | 0.566180 | 1_3:-34724807 | Msa0115820:CDS |
| CAGTACTGGCTCCAAAGAGA+GGG | 0.575024 | 1_3:-34722917 | Msa0115820:CDS |
| AATTGATAGATACCTGAAAG+AGG | 0.577355 | 1_3:+34725079 | None:intergenic |
| TCAAAAGAACTTAGAGTGCG+TGG | 0.579113 | 1_3:-34723270 | Msa0115820:CDS |
| TGGCTCCAAAGAGAGGGGCC+AGG | 0.581057 | 1_3:-34722911 | Msa0115820:CDS |
| TTGAATCTAGCACCAAAGGA+AGG | 0.582942 | 1_3:-34722733 | Msa0115820:CDS |
| GGACACGTGTTGACGAGACC+TGG | 0.590486 | 1_3:+34722893 | None:intergenic |
| ATCTGAAACCAACACCAAAG+TGG | 0.593928 | 1_3:+34725264 | None:intergenic |
| AAGTTTGATGCTCTGCACAT+AGG | 0.596134 | 1_3:-34724843 | Msa0115820:CDS |
| ACTTGCAATTCAAGCATCAA+GGG | 0.598932 | 1_3:-34724811 | Msa0115820:CDS |
| CCAGTACTGGCTCCAAAGAG+AGG | 0.599060 | 1_3:-34722918 | Msa0115820:CDS |
| GTCCGCGAAGCGCTTGCTGT+AGG | 0.605733 | 1_3:-34722874 | Msa0115820:CDS |
| ACAAATGATAAAAGAAATGG+AGG | 0.605894 | 1_3:+34724783 | None:intergenic |
| TGCGGAGGAGGAATTGGCAA+TGG | 0.607080 | 1_3:-34725339 | Msa0115820:exon |
| AACTTCTCAACAAATTGTCG+CGG | 0.636369 | 1_3:+34723294 | None:intergenic |
| GCTGAATGTTTCTCGATCAG+TGG | 0.638034 | 1_3:+34722795 | None:intergenic |
| CACCGAAAGAAGGTTTGAGG+GGG | 0.652358 | 1_3:+34725213 | None:intergenic |
| GAACGTGAAATCATCTCCGA+CGG | 0.657470 | 1_3:-34724983 | Msa0115820:CDS |
| AGAGTTAGAAAAGCTATGTG+AGG | 0.658219 | 1_3:-34723010 | Msa0115820:CDS |
| GCACCGAAAGAAGGTTTGAG+GGG | 0.664687 | 1_3:+34725212 | None:intergenic |
| TGTGACTGCAGATATTCCGT+CGG | 0.671866 | 1_3:+34724967 | None:intergenic |
| AGTACTGGCTCCAAAGAGAG+GGG | 0.695442 | 1_3:-34722916 | Msa0115820:CDS |
| CATATAGAAACAGATTACGG+CGG | 0.732128 | 1_3:-34722631 | Msa0115820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATTGAATTATTGAA+AGG | - | chr1_3:34723137-34723156 | Msa0115820:intron | 10.0% |
| !! | TGAACCAATAAAAAAAATTA+AGG | + | chr1_3:34722703-34722722 | None:intergenic | 15.0% |
| !! | ATATAAATAAAAAAAGCGAA+TGG | - | chr1_3:34723100-34723119 | Msa0115820:intron | 15.0% |
| !! | ATTAAGGTGAATATATATAT+AGG | - | chr1_3:34723167-34723186 | Msa0115820:intron | 15.0% |
| !!! | TATTTTATCAACTATAACAT+AGG | + | chr1_3:34724175-34724194 | None:intergenic | 15.0% |
| !! | GACAAAATTAGAATAAATTA+AGG | + | chr1_3:34724534-34724553 | None:intergenic | 15.0% |
| !! | ATATATTATGATTATGTGAA+CGG | + | chr1_3:34724571-34724590 | None:intergenic | 15.0% |
| !! | TTCACATAATCATAATATAT+TGG | - | chr1_3:34724571-34724590 | Msa0115820:intron | 15.0% |
| !! | TTACATAATAAAATCTGTTA+TGG | - | chr1_3:34724782-34724801 | Msa0115820:CDS | 15.0% |
| !!! | AATTTTTATTTGTTGAGTAT+TGG | + | chr1_3:34724815-34724834 | None:intergenic | 15.0% |
| !!! | TCGTCCTTAATTTTTTTTAT+TGG | - | chr1_3:34722696-34722715 | Msa0115820:CDS | 20.0% |
| !!! | AACTTATTTCAATTGTTTTG+CGG | + | chr1_3:34723074-34723093 | None:intergenic | 20.0% |
| !! | ATTGTAATAATAGCAAAACT+AGG | - | chr1_3:34723266-34723285 | Msa0115820:CDS | 20.0% |
| !!! | TGTATTTAAAATCCACTTTA+AGG | - | chr1_3:34724049-34724068 | Msa0115820:intron | 20.0% |
| !!! | ATAGTTGATAAAATAACGTT+TGG | - | chr1_3:34724180-34724199 | Msa0115820:intron | 20.0% |
| !! | AATCTTTATCCTCATATAAA+CGG | - | chr1_3:34724646-34724665 | Msa0115820:intron | 20.0% |
| !! | TATTTATTTCCGTTTATATG+AGG | + | chr1_3:34724658-34724677 | None:intergenic | 20.0% |
| ! | AAGAATAGCATTTGTTTGAT+TGG | + | chr1_3:34722597-34722616 | None:intergenic | 25.0% |
| ! | ACAAATGATAAAAGAAATGG+AGG | + | chr1_3:34722973-34722992 | None:intergenic | 25.0% |
| ! | CCAACAAATGATAAAAGAAA+TGG | + | chr1_3:34722976-34722995 | None:intergenic | 25.0% |
| !! | CCATTTCTTTTATCATTTGT+TGG | - | chr1_3:34722973-34722992 | Msa0115820:CDS | 25.0% |
| ! | TAAATAAAAAAAGCGAATGG+AGG | - | chr1_3:34723103-34723122 | Msa0115820:intron | 25.0% |
| !! | ATTGAAAGGTGTACATATTA+AGG | - | chr1_3:34723151-34723170 | Msa0115820:intron | 25.0% |
| ! | CTACATAAATTAGCATAATC+TGG | - | chr1_3:34723230-34723249 | Msa0115820:intron | 25.0% |
| ! | TATAAATGAAGGGTTACTAA+CGG | + | chr1_3:34723360-34723379 | None:intergenic | 25.0% |
| ! | TACCATAGATTATTCAAGTA+GGG | + | chr1_3:34723383-34723402 | None:intergenic | 25.0% |
| !!! | AAGATTTACTTTTCTCTTCA+TGG | - | chr1_3:34723512-34723531 | Msa0115820:intron | 25.0% |
| ! | GTAGTTAATGAAACATGTAT+TGG | - | chr1_3:34723534-34723553 | Msa0115820:intron | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | + | chr1_3:34723805-34723824 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | + | chr1_3:34723809-34723828 | None:intergenic | 25.0% |
| ! | TGGAAGAAATAAATGACATT+GGG | + | chr1_3:34723890-34723909 | None:intergenic | 25.0% |
| ! | ATAAATTCCCAATGACATTT+AGG | + | chr1_3:34723974-34723993 | None:intergenic | 25.0% |
| !! | ATTTAAAATCCACTTTAAGG+AGG | - | chr1_3:34724052-34724071 | Msa0115820:intron | 25.0% |
| ! | GTTTATATGAGGATAAAGAT+TGG | + | chr1_3:34724647-34724666 | None:intergenic | 25.0% |
| ! | ACAAATAAAAATTCCAGTAC+TGG | - | chr1_3:34724822-34724841 | Msa0115820:CDS | 25.0% |
| ! | AGATTCAATAAGCATGATTT+AGG | + | chr1_3:34725008-34725027 | None:intergenic | 25.0% |
| ! | AAGAAAATGTTATGCTATGT+AGG | - | chr1_3:34725075-34725094 | Msa0115820:intron | 25.0% |
| ! | AGAAAATGTTATGCTATGTA+GGG | - | chr1_3:34725076-34725095 | Msa0115820:intron | 25.0% |
| ! | ATCCATATAGAAACAGATTA+CGG | - | chr1_3:34725119-34725138 | Msa0115820:CDS | 25.0% |
| TATTCTTCTAAGTCTTCTTC+TGG | - | chr1_3:34722610-34722629 | Msa0115820:CDS | 30.0% | |
| AAAGAGGAATAAAAAAGGAG+GGG | + | chr1_3:34722661-34722680 | None:intergenic | 30.0% | |
| GAAAGAGGAATAAAAAAGGA+GGG | + | chr1_3:34722662-34722681 | None:intergenic | 30.0% | |
| TGAAAGAGGAATAAAAAAGG+AGG | + | chr1_3:34722663-34722682 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTTATTCCTCTTTC+AGG | - | chr1_3:34722662-34722681 | Msa0115820:CDS | 30.0% |
| ACCTGAAAGAGGAATAAAAA+AGG | + | chr1_3:34722666-34722685 | None:intergenic | 30.0% | |
| AATTGATAGATACCTGAAAG+AGG | + | chr1_3:34722677-34722696 | None:intergenic | 30.0% | |
| !! | AGGTTTGTTTGTTTTCTCTT+TGG | - | chr1_3:34722808-34722827 | Msa0115820:CDS | 30.0% |
| !! | TCTTTTATCATTTGTTGGCA+TGG | - | chr1_3:34722978-34722997 | Msa0115820:CDS | 30.0% |
| TCAAGTAGGGTATAAATGAA+GGG | + | chr1_3:34723370-34723389 | None:intergenic | 30.0% | |
| TTCAAGTAGGGTATAAATGA+AGG | + | chr1_3:34723371-34723390 | None:intergenic | 30.0% | |
| TACCCTACTTGAATAATCTA+TGG | - | chr1_3:34723378-34723397 | Msa0115820:CDS | 30.0% | |
| CTACCATAGATTATTCAAGT+AGG | + | chr1_3:34723384-34723403 | None:intergenic | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | + | chr1_3:34723806-34723825 | None:intergenic | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | + | chr1_3:34723812-34723831 | None:intergenic | 30.0% | |
| AAGAAATAAATGACATTGGG+AGG | + | chr1_3:34723887-34723906 | None:intergenic | 30.0% | |
| GTGGAAGAAATAAATGACAT+TGG | + | chr1_3:34723891-34723910 | None:intergenic | 30.0% | |
| GAAAAAAAAGAACGAGTAAG+TGG | + | chr1_3:34723910-34723929 | None:intergenic | 30.0% | |
| AAACAAAGCCTAAATGTCAT+TGG | - | chr1_3:34723963-34723982 | Msa0115820:intron | 30.0% | |
| AACAAAGCCTAAATGTCATT+GGG | - | chr1_3:34723964-34723983 | Msa0115820:intron | 30.0% | |
| TCAACTATAACATAGGCAAA+TGG | + | chr1_3:34724168-34724187 | None:intergenic | 30.0% | |
| CCAAGATGATAAGAAAATGA+TGG | + | chr1_3:34724280-34724299 | None:intergenic | 30.0% | |
| ! | CCATCATTTTCTTATCATCT+TGG | - | chr1_3:34724277-34724296 | Msa0115820:intron | 30.0% |
| ! | TCATTTTCTTATCATCTTGG+AGG | - | chr1_3:34724280-34724299 | Msa0115820:intron | 30.0% |
| ! | CATTTTCTTATCATCTTGGA+GGG | - | chr1_3:34724281-34724300 | Msa0115820:intron | 30.0% |
| ! | ATTTTCTTATCATCTTGGAG+GGG | - | chr1_3:34724282-34724301 | Msa0115820:intron | 30.0% |
| ! | TTGGATATTTTCCATTTTCC+CGG | - | chr1_3:34724590-34724609 | Msa0115820:intron | 30.0% |
| ACGGAAATAAATATCTGTAC+TGG | - | chr1_3:34724665-34724684 | Msa0115820:intron | 30.0% | |
| ! | AAATATGTCTCAGAGCTTTT+GGG | - | chr1_3:34724909-34724928 | Msa0115820:intron | 30.0% |
| ACAACATCGTCTTGTATTAA+TGG | - | chr1_3:34724935-34724954 | Msa0115820:intron | 30.0% | |
| TTCTCATATAAACCTTCCTT+TGG | + | chr1_3:34725035-34725054 | None:intergenic | 30.0% | |
| CAGTACTTGCATATTGAATT+TGG | - | chr1_3:34725176-34725195 | Msa0115820:CDS | 30.0% | |
| ATCTAAACTGAATCAAGTAC+TGG | + | chr1_3:34725207-34725226 | None:intergenic | 30.0% | |
| ! | TAAGACTTAGAATTTTCACC+CGG | + | chr1_3:34725284-34725303 | None:intergenic | 30.0% |
| ATAATGCATTAAGGGGAAAA+GGG | + | chr1_3:34725335-34725354 | None:intergenic | 30.0% | |
| !! | GTTTTCTCTTTGGAAGTTGT+TGG | - | chr1_3:34722818-34722837 | Msa0115820:CDS | 35.0% |
| CTATTACTGATGATATTGCC+AGG | - | chr1_3:34722868-34722887 | Msa0115820:CDS | 35.0% | |
| AACTTGCAATTCAAGCATCA+AGG | - | chr1_3:34722941-34722960 | Msa0115820:CDS | 35.0% | |
| ACTTGCAATTCAAGCATCAA+GGG | - | chr1_3:34722942-34722961 | Msa0115820:CDS | 35.0% | |
| TTAGGAGGGAGAGAAATATA+GGG | - | chr1_3:34723622-34723641 | Msa0115820:intron | 35.0% | |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | - | chr1_3:34723818-34723837 | Msa0115820:intron | 35.0% |
| ACATAAAACCCTCCTCATTT+GGG | + | chr1_3:34723833-34723852 | None:intergenic | 35.0% | |
| AACATAAAACCCTCCTCATT+TGG | + | chr1_3:34723834-34723853 | None:intergenic | 35.0% | |
| AATAAATGACATTGGGAGGT+GGG | + | chr1_3:34723883-34723902 | None:intergenic | 35.0% | |
| AAATAAATGACATTGGGAGG+TGG | + | chr1_3:34723884-34723903 | None:intergenic | 35.0% | |
| CTCGATACTTGTAATCGTAA+TGG | + | chr1_3:34724079-34724098 | None:intergenic | 35.0% | |
| ACTCAATCTCAAACTCTTCT+GGG | + | chr1_3:34724416-34724435 | None:intergenic | 35.0% | |
| AACTCAATCTCAAACTCTTC+TGG | + | chr1_3:34724417-34724436 | None:intergenic | 35.0% | |
| AACTTCTCAACAAATTGTCG+CGG | + | chr1_3:34724462-34724481 | None:intergenic | 35.0% | |
| ! | ATTTTCCATTTTCCCGGAAT+AGG | - | chr1_3:34724596-34724615 | Msa0115820:intron | 35.0% |
| ! | CAGCTGCTTTATATCCAAAT+CGG | + | chr1_3:34724713-34724732 | None:intergenic | 35.0% |
| AGAGTTAGAAAAGCTATGTG+AGG | - | chr1_3:34724743-34724762 | Msa0115820:intron | 35.0% | |
| ! | GAAATATGTCTCAGAGCTTT+TGG | - | chr1_3:34724908-34724927 | Msa0115820:intron | 35.0% |
| ! | ATTCAGCTTTAGCCAGTATA+AGG | - | chr1_3:34724974-34724993 | Msa0115820:CDS | 35.0% |
| CTTATTGAATCTAGCACCAA+AGG | - | chr1_3:34725016-34725035 | Msa0115820:intron | 35.0% | |
| !!! | GAGAAGTGTTCACTTTTACT+TGG | - | chr1_3:34725050-34725069 | Msa0115820:intron | 35.0% |
| CATATAGAAACAGATTACGG+CGG | - | chr1_3:34725122-34725141 | Msa0115820:CDS | 35.0% | |
| CAGATGATTCTTATATGTCC+CGG | - | chr1_3:34725262-34725281 | Msa0115820:CDS | 35.0% | |
| AGATGATTCTTATATGTCCC+GGG | - | chr1_3:34725263-34725282 | Msa0115820:CDS | 35.0% | |
| ! | AAGACTTAGAATTTTCACCC+GGG | + | chr1_3:34725283-34725302 | None:intergenic | 35.0% |
| CATAATGCATTAAGGGGAAA+AGG | + | chr1_3:34725336-34725355 | None:intergenic | 35.0% | |
| GATTGTGAACTTCTCCACTT+TGG | - | chr1_3:34722475-34722494 | Msa0115820:three_prime_UTR | 40.0% | |
| ! | ATCTGAAACCAACACCAAAG+TGG | + | chr1_3:34722492-34722511 | None:intergenic | 40.0% |
| ! | CTACTATTAGCACCGAAAGA+AGG | + | chr1_3:34722553-34722572 | None:intergenic | 40.0% |
| TCTTCTAAGTCTTCTTCTGG+AGG | - | chr1_3:34722613-34722632 | Msa0115820:CDS | 40.0% | |
| TTACTGATGATATTGCCAGG+TGG | - | chr1_3:34722871-34722890 | Msa0115820:CDS | 40.0% | |
| AAGTTTGATGCTCTGCACAT+AGG | - | chr1_3:34722910-34722929 | Msa0115820:CDS | 40.0% | |
| ! | ATCATTTGTTGGCATGGCTA+AGG | - | chr1_3:34722984-34723003 | Msa0115820:CDS | 40.0% |
| ! | CATGGCTAAGGTATTTGGTT+GGG | - | chr1_3:34722996-34723015 | Msa0115820:CDS | 40.0% |
| AGGTATTTGGTTGGGAACAT+AGG | - | chr1_3:34723004-34723023 | Msa0115820:CDS | 40.0% | |
| !! | AGAGTTTGTTGTTGTTGCGA+TGG | + | chr1_3:34723453-34723472 | None:intergenic | 40.0% |
| !! | TTGTCACCAAGGCTTTGTTT+GGG | - | chr1_3:34723572-34723591 | Msa0115820:intron | 40.0% |
| CTTAGGAGGGAGAGAAATAT+AGG | - | chr1_3:34723621-34723640 | Msa0115820:intron | 40.0% | |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | + | chr1_3:34723798-34723817 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | + | chr1_3:34723799-34723818 | None:intergenic | 40.0% |
| ATAAAACCCTCCTCATTTGG+GGG | + | chr1_3:34723831-34723850 | None:intergenic | 40.0% | |
| CATAAAACCCTCCTCATTTG+GGG | + | chr1_3:34723832-34723851 | None:intergenic | 40.0% | |
| ATAAATGACATTGGGAGGTG+GGG | + | chr1_3:34723882-34723901 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGCGAGTT+TGG | + | chr1_3:34723956-34723975 | None:intergenic | 40.0% |
| TCCAGAAGTTTAGTCATCGT+TGG | - | chr1_3:34724106-34724125 | Msa0115820:intron | 40.0% | |
| CCAGAAGTTTAGTCATCGTT+GGG | - | chr1_3:34724107-34724126 | Msa0115820:intron | 40.0% | |
| TTCTGAGTTACTGAAGATCG+CGG | - | chr1_3:34724252-34724271 | Msa0115820:intron | 40.0% | |
| CGATCACATTTAGCGACTAT+GGG | + | chr1_3:34724348-34724367 | None:intergenic | 40.0% | |
| TCGATCACATTTAGCGACTA+TGG | + | chr1_3:34724349-34724368 | None:intergenic | 40.0% | |
| AAAGCGCGTTCTTTCATCTT+GGG | - | chr1_3:34724368-34724387 | Msa0115820:intron | 40.0% | |
| TCATCTTGGGTTCCTTATTG+TGG | - | chr1_3:34724381-34724400 | Msa0115820:intron | 40.0% | |
| GGTTCCTTATTGTGGTAACA+TGG | - | chr1_3:34724389-34724408 | Msa0115820:intron | 40.0% | |
| !! | AGATTGAGTTTTCAAGCGTG+CGG | - | chr1_3:34724427-34724446 | Msa0115820:intron | 40.0% |
| TCAAAAGAACTTAGAGTGCG+TGG | - | chr1_3:34724483-34724502 | Msa0115820:intron | 40.0% | |
| ATGTTCCTATTCCGGGAAAA+TGG | + | chr1_3:34724604-34724623 | None:intergenic | 40.0% | |
| CATGCTAATGTTCCTATTCC+GGG | + | chr1_3:34724611-34724630 | None:intergenic | 40.0% | |
| CCATGCTAATGTTCCTATTC+CGG | + | chr1_3:34724612-34724631 | None:intergenic | 40.0% | |
| ! | CGATTTGGATATAAAGCAGC+TGG | - | chr1_3:34724711-34724730 | Msa0115820:intron | 40.0% |
| ! | GCTATGTGAGGAGTATGAAA+TGG | - | chr1_3:34724755-34724774 | Msa0115820:CDS | 40.0% |
| TTGAATCTAGCACCAAAGGA+AGG | - | chr1_3:34725020-34725039 | Msa0115820:intron | 40.0% | |
| !! | CGCCGTAATCTGTTTCTATA+TGG | + | chr1_3:34725124-34725143 | None:intergenic | 40.0% |
| ! | GAACTTCTCCACTTTGGTGT+TGG | - | chr1_3:34722481-34722500 | Msa0115820:three_prime_UTR | 45.0% |
| ! | AGCACCGAAAGAAGGTTTGA+GGG | + | chr1_3:34722545-34722564 | None:intergenic | 45.0% |
| ! | TAGCACCGAAAGAAGGTTTG+AGG | + | chr1_3:34722546-34722565 | None:intergenic | 45.0% |
| ! | TCTAAGTCTTCTTCTGGAGG+AGG | - | chr1_3:34722616-34722635 | Msa0115820:CDS | 45.0% |
| GAACGTGAAATCATCTCCGA+CGG | - | chr1_3:34722770-34722789 | Msa0115820:CDS | 45.0% | |
| TGTGACTGCAGATATTCCGT+CGG | + | chr1_3:34722789-34722808 | None:intergenic | 45.0% | |
| CCAGGTGGAATTGTAGCATT+GGG | - | chr1_3:34722886-34722905 | Msa0115820:CDS | 45.0% | |
| ! | GTTGGCATGGCTAAGGTATT+TGG | - | chr1_3:34722991-34723010 | Msa0115820:CDS | 45.0% |
| ! | GCATGGCTAAGGTATTTGGT+TGG | - | chr1_3:34722995-34723014 | Msa0115820:CDS | 45.0% |
| GCAAAACTAGGACAATGTCG+CGG | - | chr1_3:34723278-34723297 | Msa0115820:CDS | 45.0% | |
| ATAGCGACGCTACAACATAG+CGG | + | chr1_3:34723328-34723347 | None:intergenic | 45.0% | |
| TTGCGATGGATCACAATAGC+TGG | + | chr1_3:34723439-34723458 | None:intergenic | 45.0% | |
| ! | AGCCTTATCCCATGAGATAG+CGG | - | chr1_3:34723475-34723494 | Msa0115820:intron | 45.0% |
| AACCGCTATCTCATGGGATA+AGG | + | chr1_3:34723480-34723499 | None:intergenic | 45.0% | |
| ! | TTATCCCATGAGATAGCGGT+TGG | - | chr1_3:34723479-34723498 | Msa0115820:intron | 45.0% |
| ! | CCTTGGTGACAAGGATCAAA+TGG | + | chr1_3:34723564-34723583 | None:intergenic | 45.0% |
| CCATTTGATCCTTGTCACCA+AGG | - | chr1_3:34723561-34723580 | Msa0115820:intron | 45.0% | |
| ! | CAAACAAAGCCTTGGTGACA+AGG | + | chr1_3:34723573-34723592 | None:intergenic | 45.0% |
| !! | CTTGTCACCAAGGCTTTGTT+TGG | - | chr1_3:34723571-34723590 | Msa0115820:intron | 45.0% |
| CAAACTCCCAAACAAAGCCT+TGG | + | chr1_3:34723581-34723600 | None:intergenic | 45.0% | |
| !! | CAAGGCTTTGTTTGGGAGTT+TGG | - | chr1_3:34723579-34723598 | Msa0115820:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr1_3:34723583-34723602 | Msa0115820:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr1_3:34723584-34723603 | Msa0115820:intron | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | + | chr1_3:34723797-34723816 | None:intergenic | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | - | chr1_3:34723821-34723840 | Msa0115820:intron | 45.0% |
| TTAGTTCCCCCAAATGAGGA+GGG | - | chr1_3:34723822-34723841 | Msa0115820:intron | 45.0% | |
| TTTGCGAGTTTGGAGGGTAA+GGG | + | chr1_3:34723946-34723965 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr1_3:34723952-34723971 | None:intergenic | 45.0% |
| TGCAGAGTTACTCTGTGTGA+TGG | + | chr1_3:34724021-34724040 | None:intergenic | 45.0% | |
| CGTAATGGTCCTCCTTAAAG+TGG | + | chr1_3:34724064-34724083 | None:intergenic | 45.0% | |
| CCCAACGATGACTAAACTTC+TGG | + | chr1_3:34724110-34724129 | None:intergenic | 45.0% | |
| ! | GAAAGCGCGTTCTTTCATCT+TGG | - | chr1_3:34724367-34724386 | Msa0115820:intron | 45.0% |
| GGGACCATGTTACCACAATA+AGG | + | chr1_3:34724396-34724415 | None:intergenic | 45.0% | |
| CCGGAATAGGAACATTAGCA+TGG | - | chr1_3:34724609-34724628 | Msa0115820:intron | 45.0% | |
| TCTGTACTGGAACTTCTTGC+AGG | - | chr1_3:34724678-34724697 | Msa0115820:intron | 45.0% | |
| GCTGAATGTTTCTCGATCAG+TGG | + | chr1_3:34724961-34724980 | None:intergenic | 45.0% | |
| TAGGAGCAGACACCTTATAC+TGG | + | chr1_3:34724989-34725008 | None:intergenic | 45.0% | |
| ! | GGCGGTTCGAGTGATATTTT+TGG | - | chr1_3:34725140-34725159 | Msa0115820:CDS | 45.0% |
| CACCGAAAGAAGGTTTGAGG+GGG | + | chr1_3:34722543-34722562 | None:intergenic | 50.0% | |
| GCACCGAAAGAAGGTTTGAG+GGG | + | chr1_3:34722544-34722563 | None:intergenic | 50.0% | |
| ! | AAGTCTTCTTCTGGAGGAGG+AGG | - | chr1_3:34722619-34722638 | Msa0115820:CDS | 50.0% |
| GACGGAATATCTGCAGTCAC+AGG | - | chr1_3:34722788-34722807 | Msa0115820:CDS | 50.0% | |
| GCCAGGTGGAATTGTAGCAT+TGG | - | chr1_3:34722885-34722904 | Msa0115820:CDS | 50.0% | |
| CCCAATGCTACAATTCCACC+TGG | + | chr1_3:34722889-34722908 | None:intergenic | 50.0% | |
| GCAATTCAAGCATCAAGGGC+TGG | - | chr1_3:34722946-34722965 | Msa0115820:CDS | 50.0% | |
| ! | CAATGTCGCGGTTTTCACAG+TGG | - | chr1_3:34723290-34723309 | Msa0115820:CDS | 50.0% |
| GCTATCTCATGGGATAAGGC+TGG | + | chr1_3:34723476-34723495 | None:intergenic | 50.0% | |
| GACACCAACCGCTATCTCAT+GGG | + | chr1_3:34723486-34723505 | None:intergenic | 50.0% | |
| AGACACCAACCGCTATCTCA+TGG | + | chr1_3:34723487-34723506 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr1_3:34723582-34723601 | Msa0115820:intron | 50.0% |
| !!! | TATTGGAGGAGGGTTTTGGG+GGG | + | chr1_3:34723795-34723814 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | + | chr1_3:34723796-34723815 | None:intergenic | 50.0% |
| ! | ACATTGGGAGGTGGGGTATT+GGG | + | chr1_3:34723875-34723894 | None:intergenic | 50.0% |
| GTTTGCGAGTTTGGAGGGTA+AGG | + | chr1_3:34723947-34723966 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr1_3:34723953-34723972 | None:intergenic | 50.0% |
| ! | GCAGGTGAGAACTACCGATT+TGG | - | chr1_3:34724696-34724715 | Msa0115820:intron | 50.0% |
| !! | CAGTACTGGCTCCAAAGAGA+GGG | - | chr1_3:34724836-34724855 | Msa0115820:CDS | 50.0% |
| !! | AGTACTGGCTCCAAAGAGAG+GGG | - | chr1_3:34724837-34724856 | Msa0115820:CDS | 50.0% |
| AAAGAAGGTTTGAGGGGGCG+TGG | + | chr1_3:34722538-34722557 | None:intergenic | 55.0% | |
| CGCCCCCTCAAACCTTCTTT+CGG | - | chr1_3:34722538-34722557 | Msa0115820:three_prime_UTR | 55.0% | |
| ! | TCTTCTTCTGGAGGAGGAGG+AGG | - | chr1_3:34722622-34722641 | Msa0115820:CDS | 55.0% |
| TTTGGGAGTTTGGAGGGGAG+CGG | - | chr1_3:34723589-34723608 | Msa0115820:intron | 55.0% | |
| AGCGGAAGGAAGGTCTTAGG+AGG | - | chr1_3:34723607-34723626 | Msa0115820:intron | 55.0% | |
| GCGGAAGGAAGGTCTTAGGA+GGG | - | chr1_3:34723608-34723627 | Msa0115820:intron | 55.0% | |
| !!! | AGGAGGGTTTTGGGGGGTTT+GGG | + | chr1_3:34723789-34723808 | None:intergenic | 55.0% |
| !! | ATTGGGAGGTGGGGTATTGG+GGG | + | chr1_3:34723873-34723892 | None:intergenic | 55.0% |
| !! | CATTGGGAGGTGGGGTATTG+GGG | + | chr1_3:34723874-34723893 | None:intergenic | 55.0% |
| GACATTGGGAGGTGGGGTAT+TGG | + | chr1_3:34723876-34723895 | None:intergenic | 55.0% | |
| GAGTTTGGAGGGTAAGGGAG+GGG | + | chr1_3:34723941-34723960 | None:intergenic | 55.0% | |
| CGAGTTTGGAGGGTAAGGGA+GGG | + | chr1_3:34723942-34723961 | None:intergenic | 55.0% | |
| GCGACTATGGGAGCTCTGTT+TGG | + | chr1_3:34724336-34724355 | None:intergenic | 55.0% | |
| AGAGTGCGTGGAGTTGTTGC+AGG | - | chr1_3:34724495-34724514 | Msa0115820:intron | 55.0% | |
| !! | CCTCTCTTTGGAGCCAGTAC+TGG | + | chr1_3:34724838-34724857 | None:intergenic | 55.0% |
| !! | CCAGTACTGGCTCCAAAGAG+AGG | - | chr1_3:34724835-34724854 | Msa0115820:CDS | 55.0% |
| ! | AGGTTTGAGGGGGCGTGGAA+AGG | + | chr1_3:34722533-34722552 | None:intergenic | 60.0% |
| TTTGGAGGGGAGCGGAAGGA+AGG | - | chr1_3:34723597-34723616 | Msa0115820:intron | 60.0% | |
| GGGAGCGGAAGGAAGGTCTT+AGG | - | chr1_3:34723604-34723623 | Msa0115820:intron | 60.0% | |
| !!! | GGGTTTTGGGGGGTTTGGGA+GGG | + | chr1_3:34723785-34723804 | None:intergenic | 60.0% |
| !!! | AGGGTTTTGGGGGGTTTGGG+AGG | + | chr1_3:34723786-34723805 | None:intergenic | 60.0% |
| !!! | GAGGAGGGTTTTGGGGGGTT+TGG | + | chr1_3:34723790-34723809 | None:intergenic | 60.0% |
| !! | TTGGGAGGTGGGGTATTGGG+GGG | + | chr1_3:34723872-34723891 | None:intergenic | 60.0% |
| TTGGAGGGTAAGGGAGGGGA+GGG | + | chr1_3:34723937-34723956 | None:intergenic | 60.0% | |
| TTTGGAGGGTAAGGGAGGGG+AGG | + | chr1_3:34723938-34723957 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGTAAGGG+AGG | + | chr1_3:34723943-34723962 | None:intergenic | 60.0% | |
| ! | GGACACGTGTTGACGAGACC+TGG | + | chr1_3:34724863-34724882 | None:intergenic | 60.0% |
| CTCCTACAGCAAGCGCTTCG+CGG | + | chr1_3:34724884-34724903 | None:intergenic | 60.0% | |
| TCTGGAGGAGGAGGAGGAGC+AGG | - | chr1_3:34722628-34722647 | Msa0115820:CDS | 65.0% | |
| GGAGTTTGGAGGGGAGCGGA+AGG | - | chr1_3:34723593-34723612 | Msa0115820:intron | 65.0% | |
| GGGTAAGGGAGGGGAGGGTT+TGG | + | chr1_3:34723932-34723951 | None:intergenic | 65.0% | |
| TGGCTCCAAAGAGAGGGGCC+AGG | - | chr1_3:34724842-34724861 | Msa0115820:CDS | 65.0% | |
| CGAGACCTGGCCCCTCTCTT+TGG | + | chr1_3:34724850-34724869 | None:intergenic | 65.0% | |
| !! | GTCCGCGAAGCGCTTGCTGT+AGG | - | chr1_3:34724879-34724898 | Msa0115820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34722416 | 34725359 | 34722416 | ID=Msa0115820;Name=Msa0115820 |
| chr1_3 | mRNA | 34722416 | 34725359 | 34722416 | ID=Msa0115820-mRNA-1;Parent=Msa0115820;Name=Msa0115820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=17|1|1|1|1|1|5|145|376 |
| chr1_3 | exon | 34722416 | 34723075 | 34722416 | ID=Msa0115820-mRNA-1:exon:11027;Parent=Msa0115820-mRNA-1 |
| chr1_3 | exon | 34723259 | 34723434 | 34723259 | ID=Msa0115820-mRNA-1:exon:11026;Parent=Msa0115820-mRNA-1 |
| chr1_3 | exon | 34724750 | 34724885 | 34724750 | ID=Msa0115820-mRNA-1:exon:11025;Parent=Msa0115820-mRNA-1 |
| chr1_3 | exon | 34724966 | 34725018 | 34724966 | ID=Msa0115820-mRNA-1:exon:11024;Parent=Msa0115820-mRNA-1 |
| chr1_3 | exon | 34725092 | 34725359 | 34725092 | ID=Msa0115820-mRNA-1:exon:11023;Parent=Msa0115820-mRNA-1 |
| chr1_3 | five_prime_UTR | 34725343 | 34725359 | 34725343 | ID=Msa0115820-mRNA-1:five_prime_utr;Parent=Msa0115820-mRNA-1 |
| chr1_3 | CDS | 34725092 | 34725342 | 34725092 | ID=Msa0115820-mRNA-1:cds;Parent=Msa0115820-mRNA-1 |
| chr1_3 | CDS | 34724966 | 34725018 | 34724966 | ID=Msa0115820-mRNA-1:cds;Parent=Msa0115820-mRNA-1 |
| chr1_3 | CDS | 34724750 | 34724885 | 34724750 | ID=Msa0115820-mRNA-1:cds;Parent=Msa0115820-mRNA-1 |
| chr1_3 | CDS | 34723259 | 34723434 | 34723259 | ID=Msa0115820-mRNA-1:cds;Parent=Msa0115820-mRNA-1 |
| chr1_3 | CDS | 34722561 | 34723075 | 34722561 | ID=Msa0115820-mRNA-1:cds;Parent=Msa0115820-mRNA-1 |
| chr1_3 | three_prime_UTR | 34722416 | 34722560 | 34722416 | ID=Msa0115820-mRNA-1:three_prime_utr;Parent=Msa0115820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
