AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028460 MtrunA17_Chr7g0248541 96.654 269 8 1 1 269 1 268 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028460 AT4G01310.1 68.939 264 75 4 3 263 2 261 7.16e-127 361

Find 75 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTACCCTTTGATTT+TGG 0.123648 7_1:+61328138 None:intergenic
TTCTAAATTATTTAGCTAAT+TGG 0.183742 7_1:-61327884 Msa1028460:three_prime_UTR
GAATTACAACATTGGTATTA+AGG 0.259700 7_1:-61328352 Msa1028460:CDS
AAAACCAACCTGATGAATAT+TGG 0.349771 7_1:+61330483 None:intergenic
TGATTCTTCTGGTGCTGTAT+TGG 0.355339 7_1:-61330596 Msa1028460:CDS
ACCACAATCTTCTTAACTTT+AGG 0.360933 7_1:+61329596 None:intergenic
TCTGTGAAAGCTGATTCTTC+TGG 0.363381 7_1:-61330607 Msa1028460:CDS
TTGAATATCAGCAGCTTTGA+TGG 0.369608 7_1:-61328381 Msa1028460:CDS
AGGATATGGATAGCGTAGTT+TGG 0.389389 7_1:+61330784 None:intergenic
TCAGCTCTGGGAACACAGTT+TGG 0.396548 7_1:+61328328 None:intergenic
TTCCTCGCTCGAGTCTTAAC+AGG 0.398404 7_1:+61329488 None:intergenic
TTGACCTTCCCTGATCTTGA+AGG 0.406375 7_1:+61329454 None:intergenic
CCGTTGCCACCTTCAAGATC+AGG 0.407745 7_1:-61329463 Msa1028460:CDS
TGCTCGCTATGAGAAGGATA+TGG 0.417089 7_1:+61330770 None:intergenic
CCTATACCAGATTTCAGCTC+TGG 0.422499 7_1:+61328315 None:intergenic
CGGAAGAGTGTAGAAGAGAA+GGG 0.424536 7_1:+61330719 None:intergenic
GCGGAAGAGTGTAGAAGAGA+AGG 0.436778 7_1:+61330718 None:intergenic
GTGTTCCCAGAGCTGAAATC+TGG 0.439069 7_1:-61328321 Msa1028460:CDS
TTCTTCTGGTGCTGTATTGG+TGG 0.440723 7_1:-61330593 Msa1028460:CDS
CTCCTACACCAATATTCATC+AGG 0.443040 7_1:-61330491 Msa1028460:intron
TGCACAAAATGCAAAAGGTT+TGG 0.451207 7_1:-61329552 Msa1028460:CDS
TCTTCTTCGTTGTTATGTCA+TGG 0.451414 7_1:-61330646 Msa1028460:CDS
AGCTCGAAATTGAGAGAGAA+AGG 0.454415 7_1:+61330690 None:intergenic
CTTGATCTAGCACTGATCAC+TGG 0.459647 7_1:-61329518 Msa1028460:CDS
CTAAGTTGATAACGCGGTCT+AGG 0.460763 7_1:+61328433 None:intergenic
CCTTGAAAATCTCTTGTCCT+AGG 0.465103 7_1:+61328405 None:intergenic
CAAAGTGCCCTTGTGTTTGA+GGG 0.465401 7_1:+61330823 None:intergenic
ATCAGCAGCTTTGATGGGAA+TGG 0.466511 7_1:-61328375 Msa1028460:CDS
TTATCAACTTAGGACTTCCT+AGG 0.473041 7_1:-61328422 Msa1028460:CDS
CTAGACCGCGTTATCAACTT+AGG 0.474580 7_1:-61328432 Msa1028460:CDS
CCAGAGCTGAAATCTGGTAT+AGG 0.476827 7_1:-61328315 Msa1028460:CDS
ATTGTGGTAAACTGTGGTAT+TGG 0.479842 7_1:-61329581 Msa1028460:CDS
ATCAGGGAAGGTCAACCACT+TGG 0.482119 7_1:-61329446 Msa1028460:CDS
ACAAAGTGCCCTTGTGTTTG+AGG 0.495680 7_1:+61330822 None:intergenic
TCAGCAGCTTTGATGGGAAT+GGG 0.496382 7_1:-61328374 Msa1028460:CDS
GAAGAAGAAGAAAATTGGGT+TGG 0.497466 7_1:+61330664 None:intergenic
GAAGCTGCACAAAATGCAAA+AGG 0.526930 7_1:-61329557 Msa1028460:CDS
AACTTCAACTCCCTCTCTGA+AGG 0.527309 7_1:+61328206 None:intergenic
TTGAGAGAGAAAGGAAGAAG+CGG 0.528557 7_1:+61330699 None:intergenic
TCAGAGATAATAATGAACTA+AGG 0.531953 7_1:-61328077 Msa1028460:three_prime_UTR
GATCCAAAATCAAAGGGTAG+AGG 0.531994 7_1:-61328141 Msa1028460:CDS
TTGATCTAGCACTGATCACT+GGG 0.532729 7_1:-61329517 Msa1028460:CDS
CCTGATCTTGAAGGTGGCAA+CGG 0.533580 7_1:+61329463 None:intergenic
TGAATATCAGCAGCTTTGAT+GGG 0.536920 7_1:-61328380 Msa1028460:CDS
AGGGGTTGTAGCCATTGTTG+TGG 0.537830 7_1:+61330738 None:intergenic
CGTTGCCACCTTCAAGATCA+GGG 0.545237 7_1:-61329462 Msa1028460:CDS
GGAGAAATCTGAAGCAGAGA+AGG 0.557353 7_1:-61330572 Msa1028460:CDS
GGAAGAGTGTAGAAGAGAAG+GGG 0.574933 7_1:+61330720 None:intergenic
TATAGGTACACCTAGAGGAA+TGG 0.575467 7_1:-61328298 Msa1028460:CDS
ACCTTCCCTGATCTTGAAGG+TGG 0.584511 7_1:+61329457 None:intergenic
GAGAATTCTTCCATAAGCAA+AGG 0.587605 7_1:+61330511 None:intergenic
ATGCAGATATCCATTCCTCT+AGG 0.588286 7_1:+61328288 None:intergenic
GAGCAATGCTCGCTATGAGA+AGG 0.590476 7_1:+61330764 None:intergenic
CTATACCAGATTTCAGCTCT+GGG 0.594159 7_1:+61328316 None:intergenic
TCCTTCTTGATCAGTTCTAG+CGG 0.602168 7_1:+61328257 None:intergenic
ATGGGTATGCCCTTCAGAGA+GGG 0.602286 7_1:-61328216 Msa1028460:CDS
AAGAAGATTGTGGTAAACTG+TGG 0.615390 7_1:-61329587 Msa1028460:CDS
ACTTCAACTCCCTCTCTGAA+GGG 0.615523 7_1:+61328207 None:intergenic
GGGATTGCTGTGACACTCAG+AGG 0.615781 7_1:-61329425 Msa1028460:CDS
TCAGGGAAGGTCAACCACTT+GGG 0.616213 7_1:-61329445 Msa1028460:CDS
GCCACCTTCAAGATCAGGGA+AGG 0.616261 7_1:-61329458 Msa1028460:CDS
AAAATTTACCCTCAAACACA+AGG 0.621693 7_1:-61330831 None:intergenic
GGGAATGGGAATTACAACAT+TGG 0.626171 7_1:-61328360 Msa1028460:CDS
ACCGCTAGAACTGATCAAGA+AGG 0.627372 7_1:-61328258 Msa1028460:CDS
GCCTAAAGTTAAGAAGATTG+TGG 0.634345 7_1:-61329597 Msa1028460:CDS
ATGTCATGGAAACAACAGAC+TGG 0.635878 7_1:-61330632 Msa1028460:CDS
ATTACACTGAATGAAACAAG+AGG 0.638913 7_1:+61328026 None:intergenic
AACCTGATGAATATTGGTGT+AGG 0.659149 7_1:+61330489 None:intergenic
CATGGGTATGCCCTTCAGAG+AGG 0.660728 7_1:-61328217 Msa1028460:CDS
CATTGCTCAATCCACAACAA+TGG 0.671751 7_1:-61330749 Msa1028460:exon
AGTGTCACAGCAATCCCAAG+TGG 0.690222 7_1:+61329431 None:intergenic
GACCTGTTAAGACTCGAGCG+AGG 0.691534 7_1:-61329490 Msa1028460:CDS
AAATTTACCCTCAAACACAA+GGG 0.705329 7_1:-61330830 None:intergenic
TCTGGTATAGGTACACCTAG+AGG 0.713169 7_1:-61328303 Msa1028460:CDS
GAAGTCCTAAGTTGATAACG+CGG 0.748246 7_1:+61328427 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAATAGTATAAAAAAT+GGG + chr7_1:61329379-61329398 None:intergenic 10.0%
!! ATACTAAATAGTATAAAAAA+TGG + chr7_1:61329380-61329399 None:intergenic 10.0%
!! ACAAAATAATATTTGATCAT+TGG + chr7_1:61329632-61329651 None:intergenic 15.0%
!! TCAAAAAAATAGATTATATG+CGG - chr7_1:61329853-61329872 Msa1028460:intron 15.0%
!! TAATGCAAAATACTATAATT+TGG + chr7_1:61329956-61329975 None:intergenic 15.0%
!!! ATTCTTATGGTTTTAAAATA+TGG + chr7_1:61330134-61330153 None:intergenic 15.0%
!! TTCTAAATTATTTAGCTAAT+TGG - chr7_1:61330798-61330817 Msa1028460:five_prime_UTR 15.0%
!!! AATTGGACTATTAATATTTT+AGG - chr7_1:61330815-61330834 Msa1028460:five_prime_UTR 15.0%
!!! TTTTTTGGTTTTGGTTTAAT+GGG - chr7_1:61328313-61328332 Msa1028460:CDS 20.0%
!!! GCATTTTCAAAAATTCATTT+TGG + chr7_1:61328760-61328779 None:intergenic 20.0%
!!! ATGACATTAAGTTGATAAAT+CGG - chr7_1:61328828-61328847 Msa1028460:intron 20.0%
!!! AATTTGAAACTAAGTGAATA+AGG - chr7_1:61328856-61328875 Msa1028460:intron 20.0%
!! GTTAACAAAATATATTCACT+AGG + chr7_1:61329320-61329339 None:intergenic 20.0%
!!! TTTAGTATTTAGAACAATGT+CGG - chr7_1:61329392-61329411 Msa1028460:intron 20.0%
!! TATTTGAATATGTTGTCATT+TGG - chr7_1:61329881-61329900 Msa1028460:intron 20.0%
!! GCATGTATAATATATTCTTA+TGG + chr7_1:61330147-61330166 None:intergenic 20.0%
!!! GATTCTTTTTGTAAAAGATA+TGG - chr7_1:61330690-61330709 Msa1028460:CDS 20.0%
! AAAAATTGTTCCTTTGCTTA+TGG - chr7_1:61328161-61328180 Msa1028460:CDS 25.0%
!!! AGGTTGGTTTTTGTTAAATT+TGG - chr7_1:61328211-61328230 Msa1028460:CDS 25.0%
!!! TTTGATTTTGCGTTTTTGTT+GGG - chr7_1:61328268-61328287 Msa1028460:CDS 25.0%
!!! GTTAAAGTTTGAGTCTTTTT+TGG - chr7_1:61328298-61328317 Msa1028460:CDS 25.0%
!!! CTTTTTTGGTTTTGGTTTAA+TGG - chr7_1:61328312-61328331 Msa1028460:CDS 25.0%
!!! TTTTTGGTTTTGGTTTAATG+GGG - chr7_1:61328314-61328333 Msa1028460:CDS 25.0%
!!! TGATTTTGACTTAAATGAGT+TGG - chr7_1:61328525-61328544 Msa1028460:intron 25.0%
!! AATTGATTCTACTTAAAGAG+AGG + chr7_1:61328644-61328663 None:intergenic 25.0%
! CTCTTTAAGTAGAATCAATT+CGG - chr7_1:61328644-61328663 Msa1028460:intron 25.0%
!! ACAGTTAAAATTGATTCTAG+AGG + chr7_1:61328709-61328728 None:intergenic 25.0%
!!! TGACATTAAGTTGATAAATC+GGG - chr7_1:61328829-61328848 Msa1028460:intron 25.0%
!!! TTAGATTCTAGTTAATTTGC+TGG - chr7_1:61329435-61329454 Msa1028460:CDS 25.0%
!!! GTAATAGAAAGTGTTTACAT+AGG - chr7_1:61329650-61329669 Msa1028460:intron 25.0%
!! ATTCTCTTTTATCTTGAGAA+TGG - chr7_1:61329714-61329733 Msa1028460:intron 25.0%
!!! AATCTATTTTTTTGACACCA+TGG + chr7_1:61329848-61329867 None:intergenic 25.0%
! TAACACAGGATGTTTAATAT+CGG - chr7_1:61329992-61330011 Msa1028460:intron 25.0%
!! ACCAATAGGTATTAGATTTT+GGG + chr7_1:61330202-61330221 None:intergenic 25.0%
!! AACCAATAGGTATTAGATTT+TGG + chr7_1:61330203-61330222 None:intergenic 25.0%
! GAATTACAACATTGGTATTA+AGG - chr7_1:61330330-61330349 Msa1028460:intron 25.0%
! TCAAGAAGGACAAAAATTAT+TGG - chr7_1:61330438-61330457 Msa1028460:intron 25.0%
!!! TCATTTTGATCCAAAATCAA+AGG - chr7_1:61330534-61330553 Msa1028460:CDS 25.0%
!!! CATTTTGATCCAAAATCAAA+GGG - chr7_1:61330535-61330554 Msa1028460:CDS 25.0%
! TCAGAGATAATAATGAACTA+AGG - chr7_1:61330605-61330624 Msa1028460:CDS 25.0%
! CCATATAAAAACTTGATTGA+TGG + chr7_1:61330730-61330749 None:intergenic 25.0%
!! CCATCAATCAAGTTTTTATA+TGG - chr7_1:61330727-61330746 Msa1028460:CDS 25.0%
CGAAGAAGAAGAAGAAAATT+GGG + chr7_1:61328025-61328044 None:intergenic 30.0%
ACGAAGAAGAAGAAGAAAAT+TGG + chr7_1:61328026-61328045 None:intergenic 30.0%
AAAACCAACCTGATGAATAT+TGG + chr7_1:61328202-61328221 None:intergenic 30.0%
!!! TTTGGACTGTTTTTTTGTGA+TGG - chr7_1:61328229-61328248 Msa1028460:CDS 30.0%
!!! TTGGACTGTTTTTTTGTGAT+GGG - chr7_1:61328230-61328249 Msa1028460:CDS 30.0%
!! GTTTGATTTTGCGTTTTTGT+TGG - chr7_1:61328267-61328286 Msa1028460:CDS 30.0%
!!! GTTTGAGTCTTTTTTGGTTT+TGG - chr7_1:61328304-61328323 Msa1028460:CDS 30.0%
AGGGACTATATTGATACATA+TGG + chr7_1:61328364-61328383 None:intergenic 30.0%
TTGCAATATCCATAATGTGA+GGG + chr7_1:61328383-61328402 None:intergenic 30.0%
TTTGCAATATCCATAATGTG+AGG + chr7_1:61328384-61328403 None:intergenic 30.0%
AATTGCTTCAAGTGTATGTT+TGG - chr7_1:61328456-61328475 Msa1028460:intron 30.0%
!!! TTTTGACTTAAATGAGTTGG+AGG - chr7_1:61328528-61328547 Msa1028460:intron 30.0%
!! GACATTAAGTTGATAAATCG+GGG - chr7_1:61328830-61328849 Msa1028460:intron 30.0%
! TTGATAACATGTCTATAGAG+AGG - chr7_1:61328891-61328910 Msa1028460:intron 30.0%
TGATAACATGTCTATAGAGA+GGG - chr7_1:61328892-61328911 Msa1028460:intron 30.0%
! AGTTGGTACTCGAAATTAAA+GGG + chr7_1:61328991-61329010 None:intergenic 30.0%
!! AAGTTGGTACTCGAAATTAA+AGG + chr7_1:61328992-61329011 None:intergenic 30.0%
CTTAGAGTAAATACTCAAGT+TGG + chr7_1:61329008-61329027 None:intergenic 30.0%
AAGAGGGAAAAACAATATTC+AGG + chr7_1:61329058-61329077 None:intergenic 30.0%
!! TATTGTTTTTCCCTCTTTTC+AGG - chr7_1:61329061-61329080 Msa1028460:intron 30.0%
ACCACAATCTTCTTAACTTT+AGG + chr7_1:61329089-61329108 None:intergenic 30.0%
CAAAATATATTCACTAGGCA+AGG + chr7_1:61329315-61329334 None:intergenic 30.0%
TGTGTAGTATAATGCATCTT+TGG - chr7_1:61329549-61329568 Msa1028460:CDS 30.0%
!!! TCATTTTACACGCTTTGTTT+TGG + chr7_1:61329695-61329714 None:intergenic 30.0%
TTTACTGAATGAGACATTGA+TGG - chr7_1:61329817-61329836 Msa1028460:intron 30.0%
!!! TAGGTATTAGATTTTGGGTT+CGG + chr7_1:61330197-61330216 None:intergenic 30.0%
ACCCAAAATCTAATACCTAT+TGG - chr7_1:61330198-61330217 Msa1028460:intron 30.0%
TCTGTCAAATATCAACCAAT+AGG + chr7_1:61330216-61330235 None:intergenic 30.0%
!! ACAAAAATTATTGGCTCTCA+TGG - chr7_1:61330447-61330466 Msa1028460:intron 30.0%
!! CAAAAATTATTGGCTCTCAT+GGG - chr7_1:61330448-61330467 Msa1028460:intron 30.0%
ATTACACTGAATGAAACAAG+AGG + chr7_1:61330659-61330678 None:intergenic 30.0%
GAAGAAGAAGAAAATTGGGT+TGG + chr7_1:61328021-61328040 None:intergenic 35.0%
TCTTCTTCGTTGTTATGTCA+TGG - chr7_1:61328036-61328055 Msa1028460:three_prime_UTR 35.0%
GAGAATTCTTCCATAAGCAA+AGG + chr7_1:61328174-61328193 None:intergenic 35.0%
AACCTGATGAATATTGGTGT+AGG + chr7_1:61328196-61328215 None:intergenic 35.0%
TACACCAATATTCATCAGGT+TGG - chr7_1:61328195-61328214 Msa1028460:CDS 35.0%
CAATATAGTCCCTCACATTA+TGG - chr7_1:61328371-61328390 Msa1028460:CDS 35.0%
ACTTGAAGCAATTCAACAGA+GGG + chr7_1:61328449-61328468 None:intergenic 35.0%
! GAGGTAAAGTGATTTGTGTT+CGG - chr7_1:61328547-61328566 Msa1028460:intron 35.0%
TTAAGTAGAATCAATTCGGC+AGG - chr7_1:61328648-61328667 Msa1028460:intron 35.0%
AGAAGCAATTCTGACATGTT+TGG + chr7_1:61328683-61328702 None:intergenic 35.0%
TCCTCTCCATTTGTATTTGT+AGG - chr7_1:61328798-61328817 Msa1028460:intron 35.0%
CCTCTCCATTTGTATTTGTA+GGG - chr7_1:61328799-61328818 Msa1028460:intron 35.0%
CTAGTCCCTACAAATACAAA+TGG + chr7_1:61328807-61328826 None:intergenic 35.0%
GCCTAAAGTTAAGAAGATTG+TGG - chr7_1:61329085-61329104 Msa1028460:intron 35.0%
AAGAAGATTGTGGTAAACTG+TGG - chr7_1:61329095-61329114 Msa1028460:intron 35.0%
ATTGTGGTAAACTGTGGTAT+TGG - chr7_1:61329101-61329120 Msa1028460:intron 35.0%
TGCACAAAATGCAAAAGGTT+TGG - chr7_1:61329130-61329149 Msa1028460:intron 35.0%
! TGGATCACATGTAAGCTTTT+TGG - chr7_1:61329569-61329588 Msa1028460:CDS 35.0%
!!! ACATGTAAGCTTTTTGGAGT+TGG - chr7_1:61329575-61329594 Msa1028460:CDS 35.0%
!!! CATGTAAGCTTTTTGGAGTT+GGG - chr7_1:61329576-61329595 Msa1028460:CDS 35.0%
TGTCTCATTCAGTAAATTGC+TGG + chr7_1:61329813-61329832 None:intergenic 35.0%
TTAGCCTCATATTCTAACAC+AGG - chr7_1:61329978-61329997 Msa1028460:intron 35.0%
ACATCCTGTGTTAGAATATG+AGG + chr7_1:61329985-61330004 None:intergenic 35.0%
!! GGATGTTTAATATCGGTTTG+CGG - chr7_1:61329999-61330018 Msa1028460:intron 35.0%
! TTTGAGATTGCGGAAAATTG+AGG - chr7_1:61330041-61330060 Msa1028460:intron 35.0%
GAGACATCACATAAAAAACC+TGG - chr7_1:61330079-61330098 Msa1028460:intron 35.0%
CATAAAAAACCTGGATGTTG+CGG - chr7_1:61330088-61330107 Msa1028460:intron 35.0%
TTATCAACTTAGGACTTCCT+AGG - chr7_1:61330260-61330279 Msa1028460:intron 35.0%
! TTGAATATCAGCAGCTTTGA+TGG - chr7_1:61330301-61330320 Msa1028460:intron 35.0%
! TGAATATCAGCAGCTTTGAT+GGG - chr7_1:61330302-61330321 Msa1028460:intron 35.0%
! CTTCTTTTTGCGAACTACTT+GGG + chr7_1:61330503-61330522 None:intergenic 35.0%
! ACTTCTTTTTGCGAACTACT+TGG + chr7_1:61330504-61330523 None:intergenic 35.0%
AGGATATGGATAGCGTAGTT+TGG + chr7_1:61327901-61327920 None:intergenic 40.0%
CATTGCTCAATCCACAACAA+TGG - chr7_1:61327933-61327952 Msa1028460:three_prime_UTR 40.0%
TTGAGAGAGAAAGGAAGAAG+CGG + chr7_1:61327986-61328005 None:intergenic 40.0%
AGCTCGAAATTGAGAGAGAA+AGG + chr7_1:61327995-61328014 None:intergenic 40.0%
ATGTCATGGAAACAACAGAC+TGG - chr7_1:61328050-61328069 Msa1028460:three_prime_UTR 40.0%
! TCTGTGAAAGCTGATTCTTC+TGG - chr7_1:61328075-61328094 Msa1028460:three_prime_UTR 40.0%
!! TGATTCTTCTGGTGCTGTAT+TGG - chr7_1:61328086-61328105 Msa1028460:three_prime_UTR 40.0%
CTCCTACACCAATATTCATC+AGG - chr7_1:61328191-61328210 Msa1028460:CDS 40.0%
! TTGCGTTTTTGTTGGGTTTG+TGG - chr7_1:61328275-61328294 Msa1028460:CDS 40.0%
! TGCGTTTTTGTTGGGTTTGT+GGG - chr7_1:61328276-61328295 Msa1028460:CDS 40.0%
CACTTGAAGCAATTCAACAG+AGG + chr7_1:61328450-61328469 None:intergenic 40.0%
! GGTTCTGTGTTGACAAGAAT+TGG - chr7_1:61328477-61328496 Msa1028460:intron 40.0%
CCCTACAAATACAAATGGAG+AGG + chr7_1:61328802-61328821 None:intergenic 40.0%
AACATGTCTATAGAGAGGGA+TGG - chr7_1:61328896-61328915 Msa1028460:intron 40.0%
ACTTTAGGCACCTGAAAAGA+GGG + chr7_1:61329074-61329093 None:intergenic 40.0%
AACTTTAGGCACCTGAAAAG+AGG + chr7_1:61329075-61329094 None:intergenic 40.0%
GAAGCTGCACAAAATGCAAA+AGG - chr7_1:61329125-61329144 Msa1028460:intron 40.0%
!! TTGATCTAGCACTGATCACT+GGG - chr7_1:61329165-61329184 Msa1028460:intron 40.0%
GCTGGTATAGTTAGATGCAT+TGG - chr7_1:61329453-61329472 Msa1028460:CDS 40.0%
ACAAACAGTAGCCAAATGTC+TGG + chr7_1:61329524-61329543 None:intergenic 40.0%
!!! ACACGCTTTGTTTTGGTATG+TGG + chr7_1:61329688-61329707 None:intergenic 40.0%
AGACATTGATGGAGTTTCCA+TGG - chr7_1:61329828-61329847 Msa1028460:intron 40.0%
CGGAAAATTGAGGTCAAACA+CGG - chr7_1:61330051-61330070 Msa1028460:intron 40.0%
!! GAAGTCCTAAGTTGATAACG+CGG + chr7_1:61330258-61330277 None:intergenic 40.0%
CCTTGAAAATCTCTTGTCCT+AGG + chr7_1:61330280-61330299 None:intergenic 40.0%
! CCTAGGACAAGAGATTTTCA+AGG - chr7_1:61330277-61330296 Msa1028460:intron 40.0%
GGGAATGGGAATTACAACAT+TGG - chr7_1:61330322-61330341 Msa1028460:intron 40.0%
CTATACCAGATTTCAGCTCT+GGG + chr7_1:61330369-61330388 None:intergenic 40.0%
TATAGGTACACCTAGAGGAA+TGG - chr7_1:61330384-61330403 Msa1028460:intron 40.0%
ATGCAGATATCCATTCCTCT+AGG + chr7_1:61330397-61330416 None:intergenic 40.0%
! TCCTTCTTGATCAGTTCTAG+CGG + chr7_1:61330428-61330447 None:intergenic 40.0%
GATCCAAAATCAAAGGGTAG+AGG - chr7_1:61330541-61330560 Msa1028460:CDS 40.0%
!! TCTCCTCTACCCTTTGATTT+TGG + chr7_1:61330547-61330566 None:intergenic 40.0%
! CAAAGTGCCCTTGTGTTTGA+GGG + chr7_1:61327862-61327881 None:intergenic 45.0%
! ACAAAGTGCCCTTGTGTTTG+AGG + chr7_1:61327863-61327882 None:intergenic 45.0%
TGCTCGCTATGAGAAGGATA+TGG + chr7_1:61327915-61327934 None:intergenic 45.0%
! GGAAGAGTGTAGAAGAGAAG+GGG + chr7_1:61327965-61327984 None:intergenic 45.0%
! CGGAAGAGTGTAGAAGAGAA+GGG + chr7_1:61327966-61327985 None:intergenic 45.0%
!! TTCTTCTGGTGCTGTATTGG+TGG - chr7_1:61328089-61328108 Msa1028460:three_prime_UTR 45.0%
! GGAGAAATCTGAAGCAGAGA+AGG - chr7_1:61328110-61328129 Msa1028460:exon 45.0%
!! CTTGATCTAGCACTGATCAC+TGG - chr7_1:61329164-61329183 Msa1028460:intron 45.0%
TTGACCTTCCCTGATCTTGA+AGG + chr7_1:61329231-61329250 None:intergenic 45.0%
! ATGAACTCTGATAAGCGCTG+AGG - chr7_1:61329480-61329499 Msa1028460:CDS 45.0%
AGGAGACTACTCCAGACATT+TGG - chr7_1:61329510-61329529 Msa1028460:CDS 45.0%
!! TTAATATCGGTTTGCGGCTG+TGG - chr7_1:61330005-61330024 Msa1028460:intron 45.0%
!! CTTCGCGATCTTTGAGATTG+CGG - chr7_1:61330031-61330050 Msa1028460:intron 45.0%
ATTGAGGTCAAACACGGTTG+TGG - chr7_1:61330057-61330076 Msa1028460:intron 45.0%
AAAATATGGTCTGCAGACCG+TGG + chr7_1:61330120-61330139 None:intergenic 45.0%
!! CTAAGTTGATAACGCGGTCT+AGG + chr7_1:61330252-61330271 None:intergenic 45.0%
CTAGACCGCGTTATCAACTT+AGG - chr7_1:61330250-61330269 Msa1028460:intron 45.0%
! ATCAGCAGCTTTGATGGGAA+TGG - chr7_1:61330307-61330326 Msa1028460:intron 45.0%
! TCAGCAGCTTTGATGGGAAT+GGG - chr7_1:61330308-61330327 Msa1028460:intron 45.0%
CCTATACCAGATTTCAGCTC+TGG + chr7_1:61330370-61330389 None:intergenic 45.0%
CCAGAGCTGAAATCTGGTAT+AGG - chr7_1:61330367-61330386 Msa1028460:intron 45.0%
TCTGGTATAGGTACACCTAG+AGG - chr7_1:61330379-61330398 Msa1028460:intron 45.0%
ACCGCTAGAACTGATCAAGA+AGG - chr7_1:61330424-61330443 Msa1028460:intron 45.0%
ACTTCAACTCCCTCTCTGAA+GGG + chr7_1:61330478-61330497 None:intergenic 45.0%
AACTTCAACTCCCTCTCTGA+AGG + chr7_1:61330479-61330498 None:intergenic 45.0%
GAGCAATGCTCGCTATGAGA+AGG + chr7_1:61327921-61327940 None:intergenic 50.0%
AGGGGTTGTAGCCATTGTTG+TGG + chr7_1:61327947-61327966 None:intergenic 50.0%
! GCGGAAGAGTGTAGAAGAGA+AGG + chr7_1:61327967-61327986 None:intergenic 50.0%
TTCCTCGCTCGAGTCTTAAC+AGG + chr7_1:61329197-61329216 None:intergenic 50.0%
CCTGATCTTGAAGGTGGCAA+CGG + chr7_1:61329222-61329241 None:intergenic 50.0%
CGTTGCCACCTTCAAGATCA+GGG - chr7_1:61329220-61329239 Msa1028460:intron 50.0%
ACCTTCCCTGATCTTGAAGG+TGG + chr7_1:61329228-61329247 None:intergenic 50.0%
ATCAGGGAAGGTCAACCACT+TGG - chr7_1:61329236-61329255 Msa1028460:intron 50.0%
TCAGGGAAGGTCAACCACTT+GGG - chr7_1:61329237-61329256 Msa1028460:intron 50.0%
AGTGTCACAGCAATCCCAAG+TGG + chr7_1:61329254-61329273 None:intergenic 50.0%
!! TCAGCTCTGGGAACACAGTT+TGG + chr7_1:61330357-61330376 None:intergenic 50.0%
GTGTTCCCAGAGCTGAAATC+TGG - chr7_1:61330361-61330380 Msa1028460:intron 50.0%
ATGGGTATGCCCTTCAGAGA+GGG - chr7_1:61330466-61330485 Msa1028460:intron 50.0%
GACCTGTTAAGACTCGAGCG+AGG - chr7_1:61329192-61329211 Msa1028460:intron 55.0%
CCGTTGCCACCTTCAAGATC+AGG - chr7_1:61329219-61329238 Msa1028460:intron 55.0%
GCCACCTTCAAGATCAGGGA+AGG - chr7_1:61329224-61329243 Msa1028460:intron 55.0%
GGGATTGCTGTGACACTCAG+AGG - chr7_1:61329257-61329276 Msa1028460:intron 55.0%
CATGGGTATGCCCTTCAGAG+AGG - chr7_1:61330465-61330484 Msa1028460:intron 55.0%
!! ATAAGCGCTGAGGCGCTTCG+AGG - chr7_1:61329490-61329509 Msa1028460:CDS 60.0%
TGGCTGTGGCCGCAACATCC+AGG + chr7_1:61330100-61330119 None:intergenic 65.0%
GGATGTTGCGGCCACAGCCA+CGG - chr7_1:61330100-61330119 Msa1028460:intron 65.0%
TGGTCTGCAGACCGTGGCTG+TGG + chr7_1:61330114-61330133 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 61327858 61330846 61327858 ID=Msa1028460;Name=Msa1028460
chr7_1 mRNA 61327858 61330846 61327858 ID=Msa1028460-mRNA-1;Parent=Msa1028460;Name=Msa1028460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|1|1|1|1|1|3|264|269
chr7_1 exon 61327858 61328469 61327858 ID=Msa1028460-mRNA-1:exon:12915;Parent=Msa1028460-mRNA-1
chr7_1 exon 61329421 61329621 61329421 ID=Msa1028460-mRNA-1:exon:12914;Parent=Msa1028460-mRNA-1
chr7_1 exon 61330492 61330846 61330492 ID=Msa1028460-mRNA-1:exon:12913;Parent=Msa1028460-mRNA-1
chr7_1 five_prime_UTR 61330753 61330846 61330753 ID=Msa1028460-mRNA-1:five_prime_utr;Parent=Msa1028460-mRNA-1
chr7_1 CDS 61330492 61330752 61330492 ID=Msa1028460-mRNA-1:cds;Parent=Msa1028460-mRNA-1
chr7_1 CDS 61329421 61329621 61329421 ID=Msa1028460-mRNA-1:cds;Parent=Msa1028460-mRNA-1
chr7_1 CDS 61328122 61328469 61328122 ID=Msa1028460-mRNA-1:cds;Parent=Msa1028460-mRNA-1
chr7_1 three_prime_UTR 61327858 61328121 61327858 ID=Msa1028460-mRNA-1:three_prime_utr;Parent=Msa1028460-mRNA-1
Gene Sequence

>Msa1028460

ATGGCTACAACCCCTTCTCTTCTACACTCTTCCGCTTCTTCCTTTCTCTCTCAATTTCGAGCTTTTCCAACCCAATTTTCTTCTTCTTCTTCGTTGTTATGTCATGGAAACAACAGACTGGTTTCTGTGAAAGCTGATTCTTCTGGTGCTGTATTGGTGGAGAAATCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAAAAAATTGTTCCTTTGCTTATGGAAGAATTCTCCTACACCAATATTCATCAGGTGCCTAAAGTTAAGAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATACTTGATCTAGCACTGATCACTGGGCAGAGACCTGTTAAGACTCGAGCGAGGAATTCCGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTATAGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACCGCTAGAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACCCAAGTAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATCCAAAATCAAAGGGTAGAGGAGACAGAGCAAAGAAGTAA

Protein sequence

>Msa1028460

MATTPSLLHSSASSFLSQFRAFPTQFSSSSSLLCHGNNRLVSVKADSSGAVLVEKSEAEKVYRLKTTYNEKIVPLLMEEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNYNIGIKDQTVFPELKSGIGTPRGMDICISTTARTDQEGQKLLALMGMPFREGVEVTQVVRKKKLKSHHFDPKSKGRGDRAKK*