AlfalfaGEDB | Msa1262310

M. sativa cultivar zhongmu-4 / Msa1262310

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262310	XP_003609300.1	97.744	133	3	0	1	133	1	133	5.10e-88	262

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262310	sp\|Q9SN73\|BSD2_ARATH	67.816	87	27	1	47	133	51	136	3.25e-38	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262310	G7JCY8	97.744	133	3	0	1	133	1	133	2.44e-88	262

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1262310	0.801856	7.389491e-49	-8.615850e-47
Msa0000780	Msa1262310	0.870474	1.420430e-66	-8.615850e-47
Msa0001460	Msa1262310	0.852142	5.603519e-61	-8.615850e-47
Msa0001950	Msa1262310	0.807482	4.947294e-50	-8.615850e-47
Msa0003470	Msa1262310	0.859624	3.635313e-63	-8.615850e-47
Msa0004350	Msa1262310	0.837353	5.466124e-57	-8.615850e-47
Msa0006050	Msa1262310	0.800330	1.516269e-48	-8.615850e-47
Msa0006700	Msa1262310	0.861103	1.297582e-63	-8.615850e-47
Msa0007230	Msa1262310	0.802565	5.281894e-49	-8.615850e-47
Msa0007450	Msa1262310	0.808824	2.561144e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262310	MtrunA17_Chr4g0063651	97.744	133	3	0	1	133	1	133	4.69e-92	262
Msa1262310	MtrunA17_Chr3g0137861	55.446	101	35	2	33	133	50	140	2.45e-33	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262310	AT3G47650.1	67.816	87	27	1	47	133	51	136	3.30e-39	129

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Find 37 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATTGCGCCATTATAGCT+TGG	0.538410	8_2:-64956553	None:intergenic
AATACAATACATAAATGAAT+AGG	0.428057	8_2:-64958959	None:intergenic
AATGGCCGATTTAAAGCTGG+TGG	0.561238	8_2:+64958594	Msa1262310:CDS
AATTTGATAGATCACTTCAA+TGG	0.456646	8_2:+64958576	Msa1262310:CDS
ACTAACAACATAGGAACAAC+TGG	0.406823	8_2:-64958922	None:intergenic
AGATGGAAACTTTCAGTCTT+TGG	0.264657	8_2:+64956783	Msa1262310:CDS
AGGAGCTGTTATTGGTAATT+CGG	0.357554	8_2:+64956714	Msa1262310:intron
AGGTGTGTTTGAAGATTTCA+AGG	0.444748	8_2:-64956597	None:intergenic
AGTAGAATTACACTCATCCA+TGG	0.595035	8_2:-64964696	None:intergenic
ATAGAATGTACACAATGCCA+AGG	0.643179	8_2:+64958543	Msa1262310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGATTTCAAGGAACAAAT+AGG	-	chr8_2:64956590-64956609	None:intergenic	30.0%
CTGAATATAATCACATGTGT+CGG	-	chr8_2:64956953-64956972	None:intergenic	30.0%
ATTCTATGAAAGGATATGTC+AGG	+	chr8_2:64957050-64957069	Msa1262310:intron	30.0%
TTCTATGAAAGGATATGTCA+GGG	+	chr8_2:64957051-64957070	Msa1262310:intron	30.0%
GAAAGAATGAAATGGAATCA+AGG	-	chr8_2:64957210-64957229	None:intergenic	30.0%
GCATTGGAAATTGTAATAGT+TGG	+	chr8_2:64957387-64957406	Msa1262310:intron	30.0%
ATGAAACAGACTGCTATAAA+TGG	-	chr8_2:64957824-64957843	None:intergenic	30.0%
ATGTTCGACTGTATTGTTTA+AGG	-	chr8_2:64957886-64957905	None:intergenic	30.0%
GAGAAAAATCTCCAAACTAT+TGG	-	chr8_2:64957986-64958005	None:intergenic	30.0%
AATCTTTCATGGAAAAGGTT+TGG	-	chr8_2:64958420-64958439	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	64956485	64964759	64956485	ID=Msa1262310;Name=Msa1262310
chr8_2	mRNA	64956485	64964759	64956485	ID=Msa1262310-mRNA-1;Parent=Msa1262310;Name=Msa1262310-mRNA-1;_AED=0.33;_eAED=0.33;_QI=78\|1\|1\|1\|0.8\|0.66\|6\|232\|133
chr8_2	exon	64956485	64956620	64956485	ID=Msa1262310-mRNA-1:exon:21013;Parent=Msa1262310-mRNA-1
chr8_2	exon	64956716	64956813	64956716	ID=Msa1262310-mRNA-1:exon:21014;Parent=Msa1262310-mRNA-1
chr8_2	exon	64957656	64957725	64957656	ID=Msa1262310-mRNA-1:exon:21015;Parent=Msa1262310-mRNA-1
chr8_2	exon	64958538	64958634	64958538	ID=Msa1262310-mRNA-1:exon:21016;Parent=Msa1262310-mRNA-1
chr8_2	exon	64958773	64958990	64958773	ID=Msa1262310-mRNA-1:exon:21017;Parent=Msa1262310-mRNA-1
chr8_2	exon	64964667	64964759	64964667	ID=Msa1262310-mRNA-1:exon:21018;Parent=Msa1262310-mRNA-1
chr8_2	five_prime_UTR	64956485	64956562	64956485	ID=Msa1262310-mRNA-1:five_prime_utr;Parent=Msa1262310-mRNA-1
chr8_2	CDS	64956563	64956620	64956563	ID=Msa1262310-mRNA-1:cds;Parent=Msa1262310-mRNA-1
chr8_2	CDS	64956716	64956813	64956716	ID=Msa1262310-mRNA-1:cds;Parent=Msa1262310-mRNA-1
chr8_2	CDS	64957656	64957725	64957656	ID=Msa1262310-mRNA-1:cds;Parent=Msa1262310-mRNA-1
chr8_2	CDS	64958538	64958634	64958538	ID=Msa1262310-mRNA-1:cds;Parent=Msa1262310-mRNA-1
chr8_2	CDS	64958773	64958851	64958773	ID=Msa1262310-mRNA-1:cds;Parent=Msa1262310-mRNA-1
chr8_2	three_prime_UTR	64958852	64958990	64958852	ID=Msa1262310-mRNA-1:three_prime_utr;Parent=Msa1262310-mRNA-1
chr8_2	three_prime_UTR	64964667	64964759	64964667	ID=Msa1262310-mRNA-1:three_prime_utr;Parent=Msa1262310-mRNA-1

Gene Sequence

>Msa1262310

ATGGCGCAATCTTTGTCTTTTGCTCCTATTTGTTCCTTGAAATCTTCAAACACACCTGGAGCTGTTATTGGTAATTCGGTTGTCCGAAAGGCTTTTCCAATGAAGGAAGTTTGTCTGAATTCTAAAGATGGAAACTTTCAGTCTTTGGTAGTTAAGGCTACAGAAGATAGTAGCAAAGGCACAACAAAAATGAAGAGCATTGTTTGTGCTGATTGTACTGGAAATGGTGCAATAGAATGTACACAATGCCAAGGTTCTGGAGTTAATTTGATAGATCACTTCAATGGCCGATTTAAAGCTGGTGGACTATGCTGGCTATGCAGGGGTAAAAAGGATATTTTGTGTGGAAGCTGTAATGGGGCTGGTTTTATTGGTGGATTCATGAGCACATTTGATGATTAG

Protein sequence

>Msa1262310

MAQSLSFAPICSLKSSNTPGAVIGNSVVRKAFPMKEVCLNSKDGNFQSLVVKATEDSSKGTTKMKSIVCADCTGNGAIECTQCQGSGVNLIDHFNGRFKAGGLCWLCRGKKDILCGSCNGAGFIGGFMSTFDD*