Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116430 | sp|Q9LZ98|AB20I_ARATH | 83.483 | 333 | 49 | 3 | 1 | 332 | 1 | 328 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116430 | G7IAA4 | 99.700 | 333 | 1 | 0 | 1 | 333 | 1 | 333 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116430 | Msa0173330 | 0.862962 | 3.493966e-64 | -8.615850e-47 |
| Msa0116430 | Msa0223920 | 0.804158 | 2.470335e-49 | -8.615850e-47 |
| Msa0116430 | Msa1172130 | -0.811161 | 8.040984e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116430 | MtrunA17_Chr1g0193051 | 99.700 | 333 | 1 | 0 | 1 | 333 | 1 | 333 | 0.0 | 678 |
| Msa0116430 | MtrunA17_Chr1g0183671 | 55.431 | 267 | 111 | 5 | 6 | 270 | 10 | 270 | 5.01e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116430 | AT5G02270.1 | 83.483 | 333 | 49 | 3 | 1 | 332 | 1 | 328 | 0.0 | 527 |
| Msa0116430 | AT5G02270.2 | 77.437 | 359 | 49 | 4 | 1 | 332 | 1 | 354 | 0.0 | 512 |
| Msa0116430 | AT5G44110.1 | 56.589 | 258 | 101 | 4 | 6 | 261 | 5 | 253 | 1.51e-99 | 295 |
| Msa0116430 | AT1G03905.1 | 63.793 | 232 | 77 | 4 | 36 | 263 | 28 | 256 | 1.95e-99 | 295 |
| Msa0116430 | AT1G03905.3 | 62.500 | 200 | 64 | 4 | 67 | 263 | 1 | 192 | 9.23e-82 | 248 |
| Msa0116430 | AT1G03905.2 | 62.500 | 200 | 64 | 4 | 67 | 263 | 1 | 192 | 9.23e-82 | 248 |
| Msa0116430 | AT1G03905.4 | 62.500 | 200 | 64 | 4 | 67 | 263 | 1 | 192 | 9.23e-82 | 248 |
| Msa0116430 | AT5G44110.2 | 57.075 | 212 | 81 | 3 | 6 | 216 | 5 | 207 | 9.45e-79 | 239 |
| Msa0116430 | AT5G44110.4 | 62.667 | 150 | 50 | 2 | 67 | 216 | 1 | 144 | 1.51e-60 | 191 |
| Msa0116430 | AT5G44110.3 | 56.725 | 171 | 64 | 3 | 6 | 175 | 5 | 166 | 3.56e-59 | 190 |
Find 113 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTGTAACACTGTATT+TGG | 0.121428 | 1_3:+35443732 | Msa0116430:three_prime_UTR |
| ATTTGTTTGCCAATGCTTTC+TGG | 0.166498 | 1_3:+35443589 | Msa0116430:three_prime_UTR |
| CCAAGAACACGAACCATTTC+AGG | 0.175968 | 1_3:-35438537 | None:intergenic |
| AATATATGTCATGCCTTAAA+TGG | 0.196234 | 1_3:-35442608 | None:intergenic |
| CCTGAAATGGTTCGTGTTCT+TGG | 0.211482 | 1_3:+35438537 | Msa0116430:CDS |
| AGTTTCTTTGACTTTCTCTA+TGG | 0.218624 | 1_3:-35443030 | None:intergenic |
| GGGTCTCCTCAAACCATTTA+AGG | 0.220345 | 1_3:+35442595 | Msa0116430:CDS |
| TCTTTGATCTCAACCGTAAT+TGG | 0.227019 | 1_3:-35438254 | None:intergenic |
| CCTTTCCTAGGTTCTTCTTC+TGG | 0.235704 | 1_3:+35442727 | Msa0116430:intron |
| TCTGGTGATCTTTGTTATCT+TGG | 0.240796 | 1_3:+35438594 | Msa0116430:CDS |
| TCTGCCGAGAAAATGATATT+TGG | 0.245834 | 1_3:+35441715 | Msa0116430:CDS |
| ATTAGCTCTGCTCTTCTTGC+AGG | 0.255307 | 1_3:-35441754 | None:intergenic |
| TCAACTTGCTTATCAAATTC+AGG | 0.268450 | 1_3:-35443366 | None:intergenic |
| GATACTACTTTAACTTCTTC+TGG | 0.277616 | 1_3:+35438576 | Msa0116430:CDS |
| ACTACAATTCTGAAGATATT+AGG | 0.310572 | 1_3:+35438495 | Msa0116430:CDS |
| AATATACATACAATATTTGT+TGG | 0.342577 | 1_3:-35442878 | None:intergenic |
| AAGAAGAGTGCAAATTTGTA+TGG | 0.373325 | 1_3:+35442574 | Msa0116430:CDS |
| GAATTTGATAAGCAAGTTGA+TGG | 0.381823 | 1_3:+35443369 | Msa0116430:CDS |
| TTCAGATTCAAAGCCAATTA+CGG | 0.384221 | 1_3:+35438241 | Msa0116430:CDS |
| AAGAAGAGCAGAGCTAATTA+AGG | 0.392285 | 1_3:+35441759 | Msa0116430:CDS |
| TGCAGAGAACAGTAGAAGTT+TGG | 0.392482 | 1_3:+35443283 | Msa0116430:intron |
| ACATATGGTGGAACCTGAAA+TGG | 0.405372 | 1_3:+35438524 | Msa0116430:CDS |
| TATTAGACATCAATCTTTCA+TGG | 0.406448 | 1_3:+35442522 | Msa0116430:CDS |
| ATAGAAGACAAAGGAAAGAA+AGG | 0.411481 | 1_3:+35443328 | Msa0116430:CDS |
| TCAAAACTCGGTTTGAGCTT+AGG | 0.411975 | 1_3:-35443500 | None:intergenic |
| TAATCCTCTTTGTTATAGAA+AGG | 0.414768 | 1_3:+35443618 | Msa0116430:three_prime_UTR |
| GGAGGATGACCGTCGATTCC+AGG | 0.422123 | 1_3:-35438293 | None:intergenic |
| GAGGAGTTGAAGGTGGGAAA+GGG | 0.426823 | 1_3:-35438055 | None:intergenic |
| GAGCTGAAATTCACTTATCC+TGG | 0.427324 | 1_3:+35438275 | Msa0116430:CDS |
| CACTCTTCTTCTTTGACCAT+CGG | 0.430083 | 1_3:-35442561 | None:intergenic |
| CCTTCTGAAGTTTCTAAGAA+AGG | 0.430504 | 1_3:+35442790 | Msa0116430:CDS |
| CGGTTACATTCCACCATTGC+CGG | 0.435159 | 1_3:+35443462 | Msa0116430:CDS |
| CCGGTTCGAGTTACTAATAA+TGG | 0.435246 | 1_3:+35443426 | Msa0116430:CDS |
| GGTGATCTTTGTTATCTTGG+TGG | 0.436365 | 1_3:+35438597 | Msa0116430:CDS |
| GCAGAAATGTCCATCTGTAT+TGG | 0.437756 | 1_3:-35441697 | None:intergenic |
| TGCCTTCTCGTTGGATCCAA+TGG | 0.439598 | 1_3:+35438374 | Msa0116430:CDS |
| TTCTCTCTCAATCTCTTCTC+CGG | 0.439832 | 1_3:+35438344 | Msa0116430:CDS |
| GAAATGCTCAATTAGCGGTT+TGG | 0.442612 | 1_3:-35438324 | None:intergenic |
| TATGCAACACATATATTTGA+CGG | 0.455846 | 1_3:+35442842 | Msa0116430:CDS |
| AACTAGCAAACTGTCACTAA+TGG | 0.457560 | 1_3:+35443049 | Msa0116430:CDS |
| TTAATTCGGTGAGGAGTTGA+AGG | 0.457729 | 1_3:-35438065 | None:intergenic |
| AATCCTCTTTGTTATAGAAA+GGG | 0.458874 | 1_3:+35443619 | Msa0116430:three_prime_UTR |
| ACTAATAATGGCTGGGCCGC+AGG | 0.461635 | 1_3:+35443438 | Msa0116430:CDS |
| TGAGGAGTTGAAGGTGGGAA+AGG | 0.461934 | 1_3:-35438056 | None:intergenic |
| GTTTCTTTGACTTTCTCTAT+GGG | 0.462744 | 1_3:-35443029 | None:intergenic |
| TTCGAGTTACTAATAATGGC+TGG | 0.463711 | 1_3:+35443430 | Msa0116430:CDS |
| AAAATGATATTTGGTGTGGC+TGG | 0.465667 | 1_3:+35441724 | Msa0116430:CDS |
| TCAAGCATTATATACTTTCG+AGG | 0.466479 | 1_3:-35443681 | None:intergenic |
| CCAAACAAAGGATATCGAAC+CGG | 0.467031 | 1_3:-35443804 | None:intergenic |
| AGGGGATCCTGCACGAGCTC+CGG | 0.470810 | 1_3:+35443407 | Msa0116430:CDS |
| TATTTGACGGTCTTGAGGAT+TGG | 0.475920 | 1_3:+35442855 | Msa0116430:CDS |
| GTTGATGGAAGCCGTGTAGT+TGG | 0.483883 | 1_3:+35443384 | Msa0116430:CDS |
| AACGAGAAGGCACCGATCAC+CGG | 0.485960 | 1_3:-35438363 | None:intergenic |
| TCAATCTCTTCTCCGGTGAT+CGG | 0.491607 | 1_3:+35438351 | Msa0116430:CDS |
| ATGTGTTGCATATATAATAG+TGG | 0.491771 | 1_3:-35442831 | None:intergenic |
| AGAGAAATTACCTGCGCCAT+TGG | 0.493189 | 1_3:-35438390 | None:intergenic |
| AGAGAGAAATGCTCAATTAG+CGG | 0.499738 | 1_3:-35438329 | None:intergenic |
| GTCATGCCTTAAATGGTTTG+AGG | 0.502728 | 1_3:-35442601 | None:intergenic |
| TCAATTAGCGGTTTGGAACC+CGG | 0.503241 | 1_3:-35438317 | None:intergenic |
| CCATTATTAGTAACTCGAAC+CGG | 0.503384 | 1_3:-35443426 | None:intergenic |
| TTCGGTGAGGAGTTGAAGGT+GGG | 0.504712 | 1_3:-35438061 | None:intergenic |
| TATCAGGTTTATGTTGCTCA+TGG | 0.505115 | 1_3:+35442987 | Msa0116430:intron |
| AGGTTTATGTTGCTCATGGA+AGG | 0.510815 | 1_3:+35442991 | Msa0116430:intron |
| TTTACTTTACCTGCATAACA+TGG | 0.511010 | 1_3:-35443644 | None:intergenic |
| TTATGTTGCTCATGGAAGGC+TGG | 0.512155 | 1_3:+35442995 | Msa0116430:CDS |
| GAAAGGGTCCCATGTTATGC+AGG | 0.514461 | 1_3:+35443635 | Msa0116430:three_prime_UTR |
| AGCGGTTTGGAACCCGGCGG+AGG | 0.521968 | 1_3:-35438311 | None:intergenic |
| ATTCGGTGAGGAGTTGAAGG+TGG | 0.524869 | 1_3:-35438062 | None:intergenic |
| AATCGACGGTCATCCTCCGC+CGG | 0.525327 | 1_3:+35438298 | Msa0116430:CDS |
| CTCGTTGGATCCAATGGCGC+AGG | 0.530895 | 1_3:+35438380 | Msa0116430:CDS |
| ACTCGAACCGGAGCTCGTGC+AGG | 0.533231 | 1_3:-35443414 | None:intergenic |
| AAGAAAGGAATGTGATGAGA+GGG | 0.539356 | 1_3:+35442805 | Msa0116430:CDS |
| GATATTAGGAGGGAAACATA+TGG | 0.550354 | 1_3:+35438509 | Msa0116430:CDS |
| AGGAAAGAAAGGAAGGCTGC+TGG | 0.552158 | 1_3:+35443339 | Msa0116430:CDS |
| AAATGATATTTGGTGTGGCT+GGG | 0.553247 | 1_3:+35441725 | Msa0116430:CDS |
| GGTGATCGGTGCCTTCTCGT+TGG | 0.553650 | 1_3:+35438365 | Msa0116430:CDS |
| ACATATATTTGACGGTCTTG+AGG | 0.557218 | 1_3:+35442850 | Msa0116430:CDS |
| GATGGAAGCCGTGTAGTTGG+AGG | 0.557443 | 1_3:+35443387 | Msa0116430:CDS |
| CTTTGAAGTTCCAATACAGA+TGG | 0.561595 | 1_3:+35441687 | Msa0116430:CDS |
| CAAACAAAGGATATCGAACC+GGG | 0.564904 | 1_3:-35443803 | None:intergenic |
| AAGACAAAGGAAAGAAAGGA+AGG | 0.565520 | 1_3:+35443332 | Msa0116430:CDS |
| GAACAGTAGAAGTTTGGCTA+CGG | 0.570397 | 1_3:+35443289 | Msa0116430:CDS |
| ACAATTCTGAAGATATTAGG+AGG | 0.572545 | 1_3:+35438498 | Msa0116430:CDS |
| ATGGAAGCCGTGTAGTTGGA+GGG | 0.572562 | 1_3:+35443388 | Msa0116430:CDS |
| ATCGACGGTCATCCTCCGCC+GGG | 0.574996 | 1_3:+35438299 | Msa0116430:CDS |
| TTACTTTACCTGCATAACAT+GGG | 0.577575 | 1_3:-35443643 | None:intergenic |
| TTCACTTATCCTGGAATCGA+CGG | 0.578787 | 1_3:+35438284 | Msa0116430:CDS |
| AAACTCGGTTTGAGCTTAGG+AGG | 0.579078 | 1_3:-35443497 | None:intergenic |
| AGAAGAGTGCAAATTTGTAT+GGG | 0.581883 | 1_3:+35442575 | Msa0116430:CDS |
| GTTACAAATTTGTAATAACA+AGG | 0.584816 | 1_3:-35443721 | None:intergenic |
| TCGAGTTACTAATAATGGCT+GGG | 0.593054 | 1_3:+35443431 | Msa0116430:CDS |
| TCTTTGTTATCTTGGTGGTG+AGG | 0.593435 | 1_3:+35438602 | Msa0116430:CDS |
| TGAATTAAATTAATTCGGTG+AGG | 0.597385 | 1_3:-35438074 | None:intergenic |
| CAGCTCTTGCTAGAACATCA+AGG | 0.597648 | 1_3:-35442766 | None:intergenic |
| CGCCATTGGATCCAACGAGA+AGG | 0.598957 | 1_3:-35438376 | None:intergenic |
| CCTTTCTTAGAAACTTCAGA+AGG | 0.599066 | 1_3:-35442790 | None:intergenic |
| GGACCCTTTCTATAACAAAG+AGG | 0.614565 | 1_3:-35443622 | None:intergenic |
| TAAGAAAGGAATGTGATGAG+AGG | 0.615451 | 1_3:+35442804 | Msa0116430:CDS |
| AGTAGAAGTTTGGCTACGGA+AGG | 0.617342 | 1_3:+35443293 | Msa0116430:CDS |
| TTATAAATACCAGAAAGCAT+TGG | 0.617921 | 1_3:-35443598 | None:intergenic |
| ATAATGGCTGGGCCGCAGGT+CGG | 0.623795 | 1_3:+35443442 | Msa0116430:CDS |
| CTTGCTTATCAAATTCAGGA+AGG | 0.634035 | 1_3:-35443362 | None:intergenic |
| ATTAGGAGGGAAACATATGG+TGG | 0.662252 | 1_3:+35438512 | Msa0116430:CDS |
| CAGGATCCCCTCCAACTACA+CGG | 0.662648 | 1_3:-35443395 | None:intergenic |
| CAATTCTGAAGATATTAGGA+GGG | 0.663049 | 1_3:+35438499 | Msa0116430:CDS |
| TGGAAGCCGTGTAGTTGGAG+GGG | 0.669936 | 1_3:+35443389 | Msa0116430:CDS |
| GGTGGAATGTAACCGACCTG+CGG | 0.673773 | 1_3:-35443454 | None:intergenic |
| AGATTGCATAAAGTATCCGA+TGG | 0.675760 | 1_3:+35442545 | Msa0116430:CDS |
| CGAGAAAATGATATTTGGTG+TGG | 0.678669 | 1_3:+35441720 | Msa0116430:CDS |
| GAAGGTGGGAAAGGGAAGCG+TGG | 0.687401 | 1_3:-35438047 | None:intergenic |
| AGAAAGGAATGTGATGAGAG+GGG | 0.702733 | 1_3:+35442806 | Msa0116430:CDS |
| GAGATGAAGATAGAAGACAA+AGG | 0.719714 | 1_3:+35443319 | Msa0116430:CDS |
| ATTAGCGGTTTGGAACCCGG+CGG | 0.782107 | 1_3:-35438314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAAAGAAAAAAAATA+TGG | + | chr1_3:35438205-35438224 | Msa0116430:exon | 10.0% |
| !! | TATAGAAAGAAAAAAAATAT+GGG | + | chr1_3:35438206-35438225 | Msa0116430:exon | 10.0% |
| !! | TTTATAATAATAAAGGATAA+AGG | + | chr1_3:35440947-35440966 | Msa0116430:intron | 10.0% |
| !! | TAAAATATAAAGAAAATCTT+TGG | + | chr1_3:35442244-35442263 | Msa0116430:intron | 10.0% |
| !! | AAAATATAAAGAAAATCTTT+GGG | + | chr1_3:35442245-35442264 | Msa0116430:intron | 10.0% |
| !!! | GCTATCATTATTTTAAATTA+GGG | - | chr1_3:35438734-35438753 | None:intergenic | 15.0% |
| !!! | TGCTATCATTATTTTAAATT+AGG | - | chr1_3:35438735-35438754 | None:intergenic | 15.0% |
| !! | AATGTAATTAATAAACTTGA+TGG | - | chr1_3:35438963-35438982 | None:intergenic | 15.0% |
| !! | TTAGCAATAAATATATGTTT+AGG | + | chr1_3:35440547-35440566 | Msa0116430:intron | 15.0% |
| !!! | TCTAGCTTTTATAATAATAA+AGG | + | chr1_3:35440940-35440959 | Msa0116430:intron | 15.0% |
| !! | CAAAAATAAATTAATCCAAA+TGG | - | chr1_3:35441165-35441184 | None:intergenic | 15.0% |
| !!! | TTGGTTTGTTTTTTTTTTTT+TGG | + | chr1_3:35441626-35441645 | Msa0116430:intron | 15.0% |
| !!! | TGGTTTGTTTTTTTTTTTTT+GGG | + | chr1_3:35441627-35441646 | Msa0116430:intron | 15.0% |
| !! | AAATATAAAGAAAATCTTTG+GGG | + | chr1_3:35442246-35442265 | Msa0116430:intron | 15.0% |
| !! | AATATACATACAATATTTGT+TGG | - | chr1_3:35442881-35442900 | None:intergenic | 15.0% |
| !!! | TATAATATAACTTGTATTCA+AGG | - | chr1_3:35443156-35443175 | None:intergenic | 15.0% |
| !! | AAGTTATATTATATAACCTA+TGG | + | chr1_3:35443163-35443182 | Msa0116430:intron | 15.0% |
| !!! | AATTTTGTTATAATATTTCC+CGG | + | chr1_3:35443785-35443804 | Msa0116430:three_prime_UTR | 15.0% |
| !! | TTCAAAAATCAATCAAACTA+TGG | + | chr1_3:35438093-35438112 | Msa0116430:five_prime_UTR | 20.0% |
| !!! | TTTGATTTTTTGTTGTTACT+AGG | + | chr1_3:35438468-35438487 | Msa0116430:intron | 20.0% |
| !! | ATTAGAAATTATCATGCAAA+TGG | + | chr1_3:35439144-35439163 | Msa0116430:intron | 20.0% |
| !!! | AACTTGATACAATACTTTTA+AGG | - | chr1_3:35439322-35439341 | None:intergenic | 20.0% |
| !! | TCTGTATCGTATAATTATAA+GGG | - | chr1_3:35439349-35439368 | None:intergenic | 20.0% |
| !! | ATCTGTATCGTATAATTATA+AGG | - | chr1_3:35439350-35439369 | None:intergenic | 20.0% |
| !!! | ATTATAAGTTAGTTTGGTAA+GGG | - | chr1_3:35439469-35439488 | None:intergenic | 20.0% |
| !!! | TATTATAAGTTAGTTTGGTA+AGG | - | chr1_3:35439470-35439489 | None:intergenic | 20.0% |
| !! | TACCAAACTAACTTATAATA+CGG | + | chr1_3:35439470-35439489 | Msa0116430:intron | 20.0% |
| !!! | TATAATCGATTTACAATTGT+TGG | - | chr1_3:35439543-35439562 | None:intergenic | 20.0% |
| !! | GATTGATAAAATACTTAGTT+TGG | + | chr1_3:35439582-35439601 | Msa0116430:intron | 20.0% |
| !! | ATTGCATAAATGTATATCAA+AGG | + | chr1_3:35440116-35440135 | Msa0116430:intron | 20.0% |
| !! | CAATAAATATATGTTTAGGA+GGG | + | chr1_3:35440551-35440570 | Msa0116430:intron | 20.0% |
| !! | GTAATAAATGCTAATCAAAT+CGG | - | chr1_3:35440740-35440759 | None:intergenic | 20.0% |
| !! | ATTATTATAAAAGCTAGACT+TGG | - | chr1_3:35440938-35440957 | None:intergenic | 20.0% |
| !!! | AAATTGAAATTTGTAGGTTT+TGG | - | chr1_3:35441510-35441529 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTTTTTTTGGGA+TGG | + | chr1_3:35441631-35441650 | Msa0116430:intron | 20.0% |
| !!! | TGTTTTTTTTTTTTTGGGAT+GGG | + | chr1_3:35441632-35441651 | Msa0116430:intron | 20.0% |
| !! | ATGATAGAAGTAATTATTCA+TGG | - | chr1_3:35441920-35441939 | None:intergenic | 20.0% |
| !! | TATATGCTTGAATTTGATAT+TGG | + | chr1_3:35442313-35442332 | Msa0116430:intron | 20.0% |
| !! | TGTAATATCTAAACATGAAA+AGG | - | chr1_3:35442659-35442678 | None:intergenic | 20.0% |
| !! | GTTACAAATTTGTAATAACA+AGG | - | chr1_3:35443724-35443743 | None:intergenic | 20.0% |
| !! | TGAATTAAATTAATTCGGTG+AGG | - | chr1_3:35438077-35438096 | None:intergenic | 25.0% |
| !! | ACTACAATTCTGAAGATATT+AGG | + | chr1_3:35438495-35438514 | Msa0116430:CDS | 25.0% |
| ! | ATACGTTACGAAATATTTCA+TGG | + | chr1_3:35438805-35438824 | Msa0116430:intron | 25.0% |
| !! | TTTTATCCATTGATAAGTGT+TGG | + | chr1_3:35439169-35439188 | Msa0116430:intron | 25.0% |
| ! | TATATGCTTCTCATATTAGT+TGG | + | chr1_3:35439218-35439237 | Msa0116430:intron | 25.0% |
| ! | TATCGTATAATTATAAGGGT+TGG | - | chr1_3:35439345-35439364 | None:intergenic | 25.0% |
| ! | GTGTATTTGATGAAATCTAA+AGG | + | chr1_3:35439419-35439438 | Msa0116430:intron | 25.0% |
| ! | TACCGTATTATAAGTTAGTT+TGG | - | chr1_3:35439475-35439494 | None:intergenic | 25.0% |
| ! | TTAGAAAACCATCAACATAA+AGG | + | chr1_3:35439606-35439625 | Msa0116430:intron | 25.0% |
| !!! | TTGCTGGATTGTTTTTATTT+TGG | - | chr1_3:35439661-35439680 | None:intergenic | 25.0% |
| ! | AATAGATTGCTAACATTTCA+AGG | + | chr1_3:35439900-35439919 | Msa0116430:intron | 25.0% |
| !! | GAATTTTATCAAACCTCTAA+TGG | - | chr1_3:35439962-35439981 | None:intergenic | 25.0% |
| ! | ATAGTTATATGTGTACATAG+AGG | + | chr1_3:35440062-35440081 | Msa0116430:intron | 25.0% |
| ! | GAAAATAGAGTTTGAATCAA+CGG | + | chr1_3:35440476-35440495 | Msa0116430:intron | 25.0% |
| ! | AAAATAGAGTTTGAATCAAC+GGG | + | chr1_3:35440477-35440496 | Msa0116430:intron | 25.0% |
| ! | GAAAATAGAGTTTCAATCAA+CGG | + | chr1_3:35440513-35440532 | Msa0116430:intron | 25.0% |
| ! | GCAATAAATATATGTTTAGG+AGG | + | chr1_3:35440550-35440569 | Msa0116430:intron | 25.0% |
| ! | TCGCTTATATATGATATCTA+CGG | + | chr1_3:35440623-35440642 | Msa0116430:intron | 25.0% |
| !! | ATTTTCAGAGTTTGAATCAA+CGG | + | chr1_3:35440796-35440815 | Msa0116430:intron | 25.0% |
| ! | TGTGATTAAGTGTGAAAATA+CGG | + | chr1_3:35440820-35440839 | Msa0116430:intron | 25.0% |
| ! | AGATTAGATTAGCAATTAGT+AGG | + | chr1_3:35440702-35440721 | Msa0116430:intron | 25.0% |
| ! | GATTAGATTAGCAATTAGTA+GGG | + | chr1_3:35440856-35440875 | Msa0116430:intron | 25.0% |
| ! | GGATAAAGGATTATACTAAT+TGG | + | chr1_3:35440961-35440980 | Msa0116430:intron | 25.0% |
| ! | ATTAATTATTAGCAAGTGCA+GGG | - | chr1_3:35440990-35441009 | None:intergenic | 25.0% |
| ! | AATTAATTATTAGCAAGTGC+AGG | - | chr1_3:35440991-35441010 | None:intergenic | 25.0% |
| ! | GATAGCAAATTGAAATTTGT+AGG | - | chr1_3:35441516-35441535 | None:intergenic | 25.0% |
| ! | CTCTGTTTAGTAAAAAATAG+CGG | - | chr1_3:35441550-35441569 | None:intergenic | 25.0% |
| ! | TTTCTATCAAATTGCTAATG+TGG | + | chr1_3:35441599-35441618 | Msa0116430:intron | 25.0% |
| ! | TTCTATCAAATTGCTAATGT+GGG | + | chr1_3:35441600-35441619 | Msa0116430:intron | 25.0% |
| ! | TTAGTCAAATACTCTTATTG+TGG | - | chr1_3:35442110-35442129 | None:intergenic | 25.0% |
| !! | TTGAATTTGATATTGGTTGA+TGG | + | chr1_3:35442320-35442339 | Msa0116430:intron | 25.0% |
| !! | AGTACGTAATGATAAAGTTT+TGG | - | chr1_3:35442379-35442398 | None:intergenic | 25.0% |
| ! | TGCATATATATAGTTGTCTT+TGG | + | chr1_3:35442457-35442476 | Msa0116430:intron | 25.0% |
| ! | TATTAGACATCAATCTTTCA+TGG | + | chr1_3:35442522-35442541 | Msa0116430:CDS | 25.0% |
| ! | AATATATGTCATGCCTTAAA+TGG | - | chr1_3:35442611-35442630 | None:intergenic | 25.0% |
| !!! | AGAGCAATTTTTTACTTGTA+AGG | + | chr1_3:35442695-35442714 | Msa0116430:intron | 25.0% |
| ! | ATGTGTTGCATATATAATAG+TGG | - | chr1_3:35442834-35442853 | None:intergenic | 25.0% |
| ! | TATGCAACACATATATTTGA+CGG | + | chr1_3:35442842-35442861 | Msa0116430:CDS | 25.0% |
| ! | ACACATATAATTGATTGAGA+AGG | - | chr1_3:35443087-35443106 | None:intergenic | 25.0% |
| ! | TATTATATAACCTATGGTTG+TGG | + | chr1_3:35443169-35443188 | Msa0116430:intron | 25.0% |
| ! | TTGAATTAATTGTGCCTAAT+TGG | + | chr1_3:35443251-35443270 | Msa0116430:intron | 25.0% |
| !! | TTATAAATACCAGAAAGCAT+TGG | - | chr1_3:35443601-35443620 | None:intergenic | 25.0% |
| !! | TAATCCTCTTTGTTATAGAA+AGG | + | chr1_3:35443618-35443637 | Msa0116430:three_prime_UTR | 25.0% |
| !! | AATCCTCTTTGTTATAGAAA+GGG | + | chr1_3:35443619-35443638 | Msa0116430:three_prime_UTR | 25.0% |
| ! | CAAATTTGTAACACTGTATT+TGG | + | chr1_3:35443732-35443751 | Msa0116430:three_prime_UTR | 25.0% |
| TTCAGATTCAAAGCCAATTA+CGG | + | chr1_3:35438241-35438260 | Msa0116430:CDS | 30.0% | |
| ! | ACAATTCTGAAGATATTAGG+AGG | + | chr1_3:35438498-35438517 | Msa0116430:CDS | 30.0% |
| ! | CAATTCTGAAGATATTAGGA+GGG | + | chr1_3:35438499-35438518 | Msa0116430:CDS | 30.0% |
| ! | GATACTACTTTAACTTCTTC+TGG | + | chr1_3:35438576-35438595 | Msa0116430:CDS | 30.0% |
| TTCGTTTATATTTCATCGCA+CGG | - | chr1_3:35438678-35438697 | None:intergenic | 30.0% | |
| ATGGTAAACGACATTTGATA+GGG | + | chr1_3:35438824-35438843 | Msa0116430:intron | 30.0% | |
| CAAAATGTTAGACTTCTAAG+TGG | - | chr1_3:35438887-35438906 | None:intergenic | 30.0% | |
| GTGGAGCATATATAAACAAA+TGG | - | chr1_3:35439267-35439286 | None:intergenic | 30.0% | |
| ACAATTACAGATGCATAATG+TGG | - | chr1_3:35439286-35439305 | None:intergenic | 30.0% | |
| ATACAGATGAAAAGTGAGAT+TGG | + | chr1_3:35439362-35439381 | Msa0116430:intron | 30.0% | |
| GGGATGATGTTAAAAAGAAA+AGG | - | chr1_3:35439449-35439468 | None:intergenic | 30.0% | |
| CAGCTTATAACAATGAAAAC+TGG | + | chr1_3:35439510-35439529 | Msa0116430:intron | 30.0% | |
| ATAACACAAACGAAATCATG+AGG | + | chr1_3:35439560-35439579 | Msa0116430:intron | 30.0% | |
| ATCTAATGCCTTTATGTTGA+TGG | - | chr1_3:35439617-35439636 | None:intergenic | 30.0% | |
| !! | TTGTGCAATTTTAGTCCTAT+TGG | - | chr1_3:35439721-35439740 | None:intergenic | 30.0% |
| !! | CCAATCTCAATTTTGTTTGA+CGG | + | chr1_3:35439758-35439777 | Msa0116430:intron | 30.0% |
| TGTATGTAAACTGCAAACAA+AGG | + | chr1_3:35439990-35440009 | Msa0116430:intron | 30.0% | |
| AAAGGTCATGATAAATGCTT+GGG | + | chr1_3:35440134-35440153 | Msa0116430:intron | 30.0% | |
| ATAAATGCTTGGGTGTTTAA+TGG | + | chr1_3:35440144-35440163 | Msa0116430:intron | 30.0% | |
| ATCGCATTAAATGATAGCAA+GGG | + | chr1_3:35440261-35440280 | Msa0116430:intron | 30.0% | |
| !! | GTGTGTTATTCGTTTTCAAT+TGG | + | chr1_3:35440417-35440436 | Msa0116430:intron | 30.0% |
| AAGTTATACGAGAGAAAATG+AGG | + | chr1_3:35440448-35440467 | Msa0116430:intron | 30.0% | |
| TTTAGGAGGGAAAAATACTA+GGG | + | chr1_3:35440564-35440583 | Msa0116430:intron | 30.0% | |
| GTGTGAAAATAGAGTTTGAA+CGG | + | chr1_3:35440676-35440695 | Msa0116430:intron | 30.0% | |
| TGTGAAAATAGAGTTTGAAC+GGG | + | chr1_3:35440677-35440696 | Msa0116430:intron | 30.0% | |
| TTAGATTAGCAATTAGTGCA+AGG | + | chr1_3:35440705-35440724 | Msa0116430:intron | 30.0% | |
| TAGATTAGCAATTAGTGCAA+GGG | + | chr1_3:35440706-35440725 | Msa0116430:intron | 30.0% | |
| ! | TTTTCAGAGTTTGAATCAAC+GGG | + | chr1_3:35440797-35440816 | Msa0116430:intron | 30.0% |
| AATTAGTAGGGAAAAATGCT+AGG | + | chr1_3:35440868-35440887 | Msa0116430:intron | 30.0% | |
| ATTAGTAGGGAAAAATGCTA+GGG | + | chr1_3:35440869-35440888 | Msa0116430:intron | 30.0% | |
| ! | TTATAAAAGCTAGACTTGGT+TGG | - | chr1_3:35440934-35440953 | None:intergenic | 30.0% |
| ! | AAGGAGGTCTAAAATTGTAT+CGG | - | chr1_3:35441045-35441064 | None:intergenic | 30.0% |
| !! | AGAATGAGAGTCATTGATTT+AGG | + | chr1_3:35441075-35441094 | Msa0116430:intron | 30.0% |
| !! | TCATTGATTTAGGCTATGTT+TGG | + | chr1_3:35441085-35441104 | Msa0116430:intron | 30.0% |
| GTATATTCATAAGCTTGTCA+AGG | + | chr1_3:35441226-35441245 | Msa0116430:intron | 30.0% | |
| !! | GTAGGTTTTGGTAAAATTAG+CGG | - | chr1_3:35441498-35441517 | None:intergenic | 30.0% |
| ! | CACACCAAATATCATTTTCT+CGG | - | chr1_3:35441722-35441741 | None:intergenic | 30.0% |
| !!! | TTTCCATTGCTATTTTGGTA+TGG | + | chr1_3:35442156-35442175 | Msa0116430:intron | 30.0% |
| TAACCATACCAAAATAGCAA+TGG | - | chr1_3:35442162-35442181 | None:intergenic | 30.0% | |
| ATATACAGAAATGAACGCAA+AGG | - | chr1_3:35442186-35442205 | None:intergenic | 30.0% | |
| ! | TATAAAGAAAATCTTTGGGG+TGG | + | chr1_3:35442249-35442268 | Msa0116430:intron | 30.0% |
| TAATGTTCACTTACAATGCA+TGG | + | chr1_3:35442406-35442425 | Msa0116430:intron | 30.0% | |
| ! | TTTTGTTCTGATGTTCAACT+TGG | + | chr1_3:35442495-35442514 | Msa0116430:intron | 30.0% |
| ! | AAGAAGAGTGCAAATTTGTA+TGG | + | chr1_3:35442574-35442593 | Msa0116430:CDS | 30.0% |
| ! | AGAAGAGTGCAAATTTGTAT+GGG | + | chr1_3:35442575-35442594 | Msa0116430:CDS | 30.0% |
| TTCAGAACTGAAATTACAGA+AGG | - | chr1_3:35442912-35442931 | None:intergenic | 30.0% | |
| ! | CATTTCAATGCTCTTTTATC+AGG | + | chr1_3:35442971-35442990 | Msa0116430:intron | 30.0% |
| ! | GTTTCTTTGACTTTCTCTAT+GGG | - | chr1_3:35443032-35443051 | None:intergenic | 30.0% |
| ! | AGTTTCTTTGACTTTCTCTA+TGG | - | chr1_3:35443033-35443052 | None:intergenic | 30.0% |
| CTGCATATTCAAAACCAATT+AGG | - | chr1_3:35443268-35443287 | None:intergenic | 30.0% | |
| ATAGAAGACAAAGGAAAGAA+AGG | + | chr1_3:35443328-35443347 | Msa0116430:CDS | 30.0% | |
| ! | TCAACTTGCTTATCAAATTC+AGG | - | chr1_3:35443369-35443388 | None:intergenic | 30.0% |
| ! | GAATTTGATAAGCAAGTTGA+TGG | + | chr1_3:35443369-35443388 | Msa0116430:CDS | 30.0% |
| TTACTTTACCTGCATAACAT+GGG | - | chr1_3:35443646-35443665 | None:intergenic | 30.0% | |
| TTTACTTTACCTGCATAACA+TGG | - | chr1_3:35443647-35443666 | None:intergenic | 30.0% | |
| TCAAGCATTATATACTTTCG+AGG | - | chr1_3:35443684-35443703 | None:intergenic | 30.0% | |
| TCTTTGATCTCAACCGTAAT+TGG | - | chr1_3:35438257-35438276 | None:intergenic | 35.0% | |
| AGAGAGAAATGCTCAATTAG+CGG | - | chr1_3:35438332-35438351 | None:intergenic | 35.0% | |
| GATATTAGGAGGGAAACATA+TGG | + | chr1_3:35438509-35438528 | Msa0116430:CDS | 35.0% | |
| ! | TCTGGTGATCTTTGTTATCT+TGG | + | chr1_3:35438594-35438613 | Msa0116430:CDS | 35.0% |
| TCGTTTATATTTCATCGCAC+GGG | - | chr1_3:35438677-35438696 | None:intergenic | 35.0% | |
| CATGGTAAACGACATTTGAT+AGG | + | chr1_3:35438823-35438842 | Msa0116430:intron | 35.0% | |
| ! | TTCTAAGTGGTGCATTGATA+TGG | - | chr1_3:35438874-35438893 | None:intergenic | 35.0% |
| TTGACAGCGTCACAATTAAT+AGG | - | chr1_3:35438938-35438957 | None:intergenic | 35.0% | |
| CACCTTAGGCAATAAGAATT+TGG | + | chr1_3:35439020-35439039 | Msa0116430:intron | 35.0% | |
| GACCAAATTCTTATTGCCTA+AGG | - | chr1_3:35439025-35439044 | None:intergenic | 35.0% | |
| GTTCTTCCAACACTTATCAA+TGG | - | chr1_3:35439178-35439197 | None:intergenic | 35.0% | |
| AGATGAAAAGTGAGATTGGT+TGG | + | chr1_3:35439366-35439385 | Msa0116430:intron | 35.0% | |
| GCAACTTTATTCAATGTTGC+TGG | - | chr1_3:35439677-35439696 | None:intergenic | 35.0% | |
| AACAGATGCAAAATGCCAAT+AGG | + | chr1_3:35439703-35439722 | Msa0116430:intron | 35.0% | |
| CCGTCAAACAAAATTGAGAT+TGG | - | chr1_3:35439761-35439780 | None:intergenic | 35.0% | |
| CAGACAATGTTGATCGTAAT+TGG | + | chr1_3:35439795-35439814 | Msa0116430:intron | 35.0% | |
| TTGATCGTAATTGGATCCAA+TGG | + | chr1_3:35439804-35439823 | Msa0116430:intron | 35.0% | |
| !! | TCATGTTTTTACAGCTCCAT+TGG | - | chr1_3:35439823-35439842 | None:intergenic | 35.0% |
| ACATGAAGTTGAAACCATGT+TGG | - | chr1_3:35439935-35439954 | None:intergenic | 35.0% | |
| ATGTAAACTGCAAACAAAGG+AGG | + | chr1_3:35439993-35440012 | Msa0116430:intron | 35.0% | |
| TGTAAACTGCAAACAAAGGA+GGG | + | chr1_3:35439994-35440013 | Msa0116430:intron | 35.0% | |
| TGTACATAGAGGATGATGAT+TGG | + | chr1_3:35440073-35440092 | Msa0116430:intron | 35.0% | |
| GTACATAGAGGATGATGATT+GGG | + | chr1_3:35440074-35440093 | Msa0116430:intron | 35.0% | |
| CAAAGGTCATGATAAATGCT+TGG | + | chr1_3:35440133-35440152 | Msa0116430:intron | 35.0% | |
| TTGGGTGTTTAATGGTTAGT+TGG | + | chr1_3:35440152-35440171 | Msa0116430:intron | 35.0% | |
| ! | TGGGTGTTTAATGGTTAGTT+GGG | + | chr1_3:35440153-35440172 | Msa0116430:intron | 35.0% |
| GATCGCATTAAATGATAGCA+AGG | + | chr1_3:35440260-35440279 | Msa0116430:intron | 35.0% | |
| CATTAAATGATAGCAAGGGA+GGG | + | chr1_3:35440265-35440284 | Msa0116430:intron | 35.0% | |
| GTTTAGGAGGGAAAAATACT+AGG | + | chr1_3:35440563-35440582 | Msa0116430:intron | 35.0% | |
| AGGGAAAAATACTAGGGATT+AGG | + | chr1_3:35440570-35440589 | Msa0116430:intron | 35.0% | |
| GGGAAAAATACTAGGGATTA+GGG | + | chr1_3:35440571-35440590 | Msa0116430:intron | 35.0% | |
| ACTAGGGATTAGGGTAAATT+AGG | + | chr1_3:35440580-35440599 | Msa0116430:intron | 35.0% | |
| CTAGGGATTAGGGTAAATTA+GGG | + | chr1_3:35440581-35440600 | Msa0116430:intron | 35.0% | |
| AGGGTAAATTAGGGTGAATT+AGG | + | chr1_3:35440590-35440609 | Msa0116430:intron | 35.0% | |
| GGGTAAATTAGGGTGAATTA+GGG | + | chr1_3:35440591-35440610 | Msa0116430:intron | 35.0% | |
| AGATTAGCAATTAGTGCAAG+GGG | + | chr1_3:35440707-35440726 | Msa0116430:intron | 35.0% | |
| GTGTGAAAATACGGTTTGAA+CGG | + | chr1_3:35440829-35440848 | Msa0116430:intron | 35.0% | |
| TGTGAAAATACGGTTTGAAC+GGG | + | chr1_3:35440830-35440849 | Msa0116430:intron | 35.0% | |
| TCTCATTCTATGTCAGAGAA+AGG | - | chr1_3:35441064-35441083 | None:intergenic | 35.0% | |
| ACCAACTATAAGCACGAAAA+TGG | - | chr1_3:35441116-35441135 | None:intergenic | 35.0% | |
| AAATTGCTAATGTGGGTGAT+TGG | + | chr1_3:35441607-35441626 | Msa0116430:intron | 35.0% | |
| !! | CTTTGAAGTTCCAATACAGA+TGG | + | chr1_3:35441687-35441706 | Msa0116430:CDS | 35.0% |
| TCTGCCGAGAAAATGATATT+TGG | + | chr1_3:35441715-35441734 | Msa0116430:CDS | 35.0% | |
| ! | CGAGAAAATGATATTTGGTG+TGG | + | chr1_3:35441720-35441739 | Msa0116430:CDS | 35.0% |
| !! | AAAATGATATTTGGTGTGGC+TGG | + | chr1_3:35441724-35441743 | Msa0116430:CDS | 35.0% |
| !! | AAATGATATTTGGTGTGGCT+GGG | + | chr1_3:35441725-35441744 | Msa0116430:CDS | 35.0% |
| AAGAAGAGCAGAGCTAATTA+AGG | + | chr1_3:35441759-35441778 | Msa0116430:CDS | 35.0% | |
| AAATTTCTTCATGTCAGACG+AGG | + | chr1_3:35441841-35441860 | Msa0116430:intron | 35.0% | |
| AATTAACAGTTTACTCGTCG+TGG | + | chr1_3:35442054-35442073 | Msa0116430:intron | 35.0% | |
| !!! | TCCTCTTTCCATTGCTATTT+TGG | + | chr1_3:35442151-35442170 | Msa0116430:intron | 35.0% |
| ACCAAAATAGCAATGGAAAG+AGG | - | chr1_3:35442155-35442174 | None:intergenic | 35.0% | |
| ! | AGATTGCATAAAGTATCCGA+TGG | + | chr1_3:35442545-35442564 | Msa0116430:CDS | 35.0% |
| CTGATGTGTTGTCTTCTTTA+TGG | + | chr1_3:35442633-35442652 | Msa0116430:intron | 35.0% | |
| CCTTTCTTAGAAACTTCAGA+AGG | - | chr1_3:35442793-35442812 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTTTCTAAGAA+AGG | + | chr1_3:35442790-35442809 | Msa0116430:CDS | 35.0% |
| TAAGAAAGGAATGTGATGAG+AGG | + | chr1_3:35442804-35442823 | Msa0116430:CDS | 35.0% | |
| AAGAAAGGAATGTGATGAGA+GGG | + | chr1_3:35442805-35442824 | Msa0116430:CDS | 35.0% | |
| ACATATATTTGACGGTCTTG+AGG | + | chr1_3:35442850-35442869 | Msa0116430:CDS | 35.0% | |
| !! | AAGAGCATTGAAATGACAGA+AGG | - | chr1_3:35442966-35442985 | None:intergenic | 35.0% |
| TATCAGGTTTATGTTGCTCA+TGG | + | chr1_3:35442987-35443006 | Msa0116430:intron | 35.0% | |
| AACTAGCAAACTGTCACTAA+TGG | + | chr1_3:35443049-35443068 | Msa0116430:CDS | 35.0% | |
| AAATTGTAAATTGCACAGCG+TGG | - | chr1_3:35443217-35443236 | None:intergenic | 35.0% | |
| GAGATGAAGATAGAAGACAA+AGG | + | chr1_3:35443319-35443338 | Msa0116430:CDS | 35.0% | |
| AAGACAAAGGAAAGAAAGGA+AGG | + | chr1_3:35443332-35443351 | Msa0116430:CDS | 35.0% | |
| CTTGCTTATCAAATTCAGGA+AGG | - | chr1_3:35443365-35443384 | None:intergenic | 35.0% | |
| CCATTATTAGTAACTCGAAC+CGG | - | chr1_3:35443429-35443448 | None:intergenic | 35.0% | |
| ! | TTCGAGTTACTAATAATGGC+TGG | + | chr1_3:35443430-35443449 | Msa0116430:CDS | 35.0% |
| TCGAGTTACTAATAATGGCT+GGG | + | chr1_3:35443431-35443450 | Msa0116430:CDS | 35.0% | |
| ! | TATTTTACCCCCTCAAAACT+CGG | - | chr1_3:35443515-35443534 | None:intergenic | 35.0% |
| ATTTGTTTGCCAATGCTTTC+TGG | + | chr1_3:35443589-35443608 | Msa0116430:three_prime_UTR | 35.0% | |
| ! | TTAATTCGGTGAGGAGTTGA+AGG | - | chr1_3:35438068-35438087 | None:intergenic | 40.0% |
| GAGCTGAAATTCACTTATCC+TGG | + | chr1_3:35438275-35438294 | Msa0116430:CDS | 40.0% | |
| TTCACTTATCCTGGAATCGA+CGG | + | chr1_3:35438284-35438303 | Msa0116430:CDS | 40.0% | |
| GAAATGCTCAATTAGCGGTT+TGG | - | chr1_3:35438327-35438346 | None:intergenic | 40.0% | |
| TTCTCTCTCAATCTCTTCTC+CGG | + | chr1_3:35438344-35438363 | Msa0116430:CDS | 40.0% | |
| ATTAGGAGGGAAACATATGG+TGG | + | chr1_3:35438512-35438531 | Msa0116430:CDS | 40.0% | |
| ! | ACATATGGTGGAACCTGAAA+TGG | + | chr1_3:35438524-35438543 | Msa0116430:CDS | 40.0% |
| ! | GGTGATCTTTGTTATCTTGG+TGG | + | chr1_3:35438597-35438616 | Msa0116430:CDS | 40.0% |
| !! | TCTTTGTTATCTTGGTGGTG+AGG | + | chr1_3:35438602-35438621 | Msa0116430:CDS | 40.0% |
| !! | GGGCATAAGTGCATTGATTA+GGG | - | chr1_3:35438647-35438666 | None:intergenic | 40.0% |
| !! | AGGGCATAAGTGCATTGATT+AGG | - | chr1_3:35438648-35438667 | None:intergenic | 40.0% |
| ! | TTCATCGCACGGGTTAAATA+GGG | - | chr1_3:35438667-35438686 | None:intergenic | 40.0% |
| ! | TTTCATCGCACGGGTTAAAT+AGG | - | chr1_3:35438668-35438687 | None:intergenic | 40.0% |
| GTAAACGTAAGAGTCACCTT+AGG | + | chr1_3:35439006-35439025 | Msa0116430:intron | 40.0% | |
| GATCAACATTGTCTGTGTGA+AGG | - | chr1_3:35439790-35439809 | None:intergenic | 40.0% | |
| GCTTATTCTGCGTGTTCATT+CGG | - | chr1_3:35439870-35439889 | None:intergenic | 40.0% | |
| ACTTCATGTTCAGCCATTAG+AGG | + | chr1_3:35439946-35439965 | Msa0116430:intron | 40.0% | |
| ACGCACGTGTATATATAGAG+TGG | + | chr1_3:35440022-35440041 | Msa0116430:intron | 40.0% | |
| GCATTAAATGATAGCAAGGG+AGG | + | chr1_3:35440264-35440283 | Msa0116430:intron | 40.0% | |
| ! | AGGGAAAACTTGGAGTGTTT+AGG | + | chr1_3:35440284-35440303 | Msa0116430:intron | 40.0% |
| ! | GGGAAAACTTGGAGTGTTTA+GGG | + | chr1_3:35440285-35440304 | Msa0116430:intron | 40.0% |
| AGGGAAAAATGCTAGGGATT+AGG | + | chr1_3:35440875-35440894 | Msa0116430:intron | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | + | chr1_3:35440876-35440895 | Msa0116430:intron | 40.0% | |
| CATTCTATGTCAGAGAAAGG+AGG | - | chr1_3:35441061-35441080 | None:intergenic | 40.0% | |
| !! | GCCATTTTCGTGCTTATAGT+TGG | + | chr1_3:35441112-35441131 | Msa0116430:intron | 40.0% |
| TGATATGATCGTCAGCCATT+TGG | + | chr1_3:35441147-35441166 | Msa0116430:intron | 40.0% | |
| AAAATTGCTTCAAGCTCGTG+AGG | - | chr1_3:35441391-35441410 | None:intergenic | 40.0% | |
| !!! | AGAAGAGATGTTGCTTTTGC+TGG | + | chr1_3:35441664-35441683 | Msa0116430:CDS | 40.0% |
| GCAGAAATGTCCATCTGTAT+TGG | - | chr1_3:35441700-35441719 | None:intergenic | 40.0% | |
| TTAAGGTTAGAAGCTGTGCA+CGG | + | chr1_3:35441776-35441795 | Msa0116430:intron | 40.0% | |
| TGGAAAGAGGAAGATAGCTT+AGG | - | chr1_3:35442142-35442161 | None:intergenic | 40.0% | |
| ATATGAGCTGTACATGCATG+TGG | + | chr1_3:35442202-35442221 | Msa0116430:intron | 40.0% | |
| TTCACTTACAATGCATGGCT+AGG | + | chr1_3:35442411-35442430 | Msa0116430:intron | 40.0% | |
| CACTCTTCTTCTTTGACCAT+CGG | - | chr1_3:35442564-35442583 | None:intergenic | 40.0% | |
| GTCATGCCTTAAATGGTTTG+AGG | - | chr1_3:35442604-35442623 | None:intergenic | 40.0% | |
| AGAAAGGAATGTGATGAGAG+GGG | + | chr1_3:35442806-35442825 | Msa0116430:CDS | 40.0% | |
| TATTTGACGGTCTTGAGGAT+TGG | + | chr1_3:35442855-35442874 | Msa0116430:CDS | 40.0% | |
| AGGTTTATGTTGCTCATGGA+AGG | + | chr1_3:35442991-35443010 | Msa0116430:intron | 40.0% | |
| GTTGTTTACTCCACAACCAT+AGG | - | chr1_3:35443182-35443201 | None:intergenic | 40.0% | |
| TGCAGAGAACAGTAGAAGTT+TGG | + | chr1_3:35443283-35443302 | Msa0116430:intron | 40.0% | |
| GAACAGTAGAAGTTTGGCTA+CGG | + | chr1_3:35443289-35443308 | Msa0116430:CDS | 40.0% | |
| ! | CCGGTTCGAGTTACTAATAA+TGG | + | chr1_3:35443426-35443445 | Msa0116430:CDS | 40.0% |
| ! | TAGGAGGAAGTTTTCTTCAC+CGG | - | chr1_3:35443484-35443503 | None:intergenic | 40.0% |
| ! | TCAAAACTCGGTTTGAGCTT+AGG | - | chr1_3:35443503-35443522 | None:intergenic | 40.0% |
| ! | TAAGCTCAAACCGAGTTTTG+AGG | + | chr1_3:35443502-35443521 | Msa0116430:CDS | 40.0% |
| !! | AAGCTCAAACCGAGTTTTGA+GGG | + | chr1_3:35443503-35443522 | Msa0116430:CDS | 40.0% |
| GGACCCTTTCTATAACAAAG+AGG | - | chr1_3:35443625-35443644 | None:intergenic | 40.0% | |
| ! | TCAATTAGCGGTTTGGAACC+CGG | - | chr1_3:35438320-35438339 | None:intergenic | 45.0% |
| TCAATCTCTTCTCCGGTGAT+CGG | + | chr1_3:35438351-35438370 | Msa0116430:CDS | 45.0% | |
| AGAGAAATTACCTGCGCCAT+TGG | - | chr1_3:35438393-35438412 | None:intergenic | 45.0% | |
| CCAAGAACACGAACCATTTC+AGG | - | chr1_3:35438540-35438559 | None:intergenic | 45.0% | |
| CCTGAAATGGTTCGTGTTCT+TGG | + | chr1_3:35438537-35438556 | Msa0116430:CDS | 45.0% | |
| !! | TGTTATCTTGGTGGTGAGGT+TGG | + | chr1_3:35438606-35438625 | Msa0116430:intron | 45.0% |
| CAAGGAATGCAACACCAACA+TGG | + | chr1_3:35439918-35439937 | Msa0116430:intron | 45.0% | |
| ATAGCAAGGGAGGGAAAACT+TGG | + | chr1_3:35440274-35440293 | Msa0116430:intron | 45.0% | |
| ! | TAAATGCTAGCTTGACCCGT+AGG | + | chr1_3:35440309-35440328 | Msa0116430:intron | 45.0% |
| ! | AAATGCTAGCTTGACCCGTA+GGG | + | chr1_3:35440310-35440329 | Msa0116430:intron | 45.0% |
| CTAGGGATTAGGGCAAAGTA+GGG | + | chr1_3:35440886-35440905 | Msa0116430:intron | 45.0% | |
| AGGGCAAAGTAGGGTGAATT+AGG | + | chr1_3:35440895-35440914 | Msa0116430:intron | 45.0% | |
| GGGCAAAGTAGGGTGAATTA+GGG | + | chr1_3:35440896-35440915 | Msa0116430:intron | 45.0% | |
| AGGGTGAATTAGGGCAAACA+TGG | + | chr1_3:35440600-35440619 | Msa0116430:intron | 45.0% | |
| ! | AGATCTGGGCTTGTTTGGAT+TGG | - | chr1_3:35441364-35441383 | None:intergenic | 45.0% |
| ! | GAAACAGATCTGGGCTTGTT+TGG | - | chr1_3:35441369-35441388 | None:intergenic | 45.0% |
| !!! | TTTTTTGGGATGGGACACAG+TGG | + | chr1_3:35441641-35441660 | Msa0116430:intron | 45.0% |
| !! | ATTAGCTCTGCTCTTCTTGC+AGG | - | chr1_3:35441757-35441776 | None:intergenic | 45.0% |
| TTCATGTCAGACGAGGTTAC+TGG | + | chr1_3:35441848-35441867 | Msa0116430:intron | 45.0% | |
| ACGAGGTTACTGGTGATTGT+AGG | + | chr1_3:35441858-35441877 | Msa0116430:intron | 45.0% | |
| !! | TGCATGGCTAGGTTCTGAAA+AGG | + | chr1_3:35442422-35442441 | Msa0116430:intron | 45.0% |
| !! | GCATGGCTAGGTTCTGAAAA+GGG | + | chr1_3:35442423-35442442 | Msa0116430:intron | 45.0% |
| !! | AGGTTCTGAAAAGGGTACAC+AGG | + | chr1_3:35442431-35442450 | Msa0116430:intron | 45.0% |
| GTTCTGATGTTCAACTTGGC+AGG | + | chr1_3:35442499-35442518 | Msa0116430:intron | 45.0% | |
| GGGTCTCCTCAAACCATTTA+AGG | + | chr1_3:35442595-35442614 | Msa0116430:CDS | 45.0% | |
| AGGTTGCTCATTCCTTTCCT+AGG | + | chr1_3:35442715-35442734 | Msa0116430:intron | 45.0% | |
| CCAGAAGAAGAACCTAGGAA+AGG | - | chr1_3:35442730-35442749 | None:intergenic | 45.0% | |
| CCTTTCCTAGGTTCTTCTTC+TGG | + | chr1_3:35442727-35442746 | Msa0116430:intron | 45.0% | |
| CTCATCCAGAAGAAGAACCT+AGG | - | chr1_3:35442735-35442754 | None:intergenic | 45.0% | |
| CAGCTCTTGCTAGAACATCA+AGG | - | chr1_3:35442769-35442788 | None:intergenic | 45.0% | |
| TTATGTTGCTCATGGAAGGC+TGG | + | chr1_3:35442995-35443014 | Msa0116430:CDS | 45.0% | |
| AGTAGAAGTTTGGCTACGGA+AGG | + | chr1_3:35443293-35443312 | Msa0116430:CDS | 45.0% | |
| ! | GAAGTTTTCTTCACCGGCAA+TGG | - | chr1_3:35443478-35443497 | None:intergenic | 45.0% |
| ! | AAACTCGGTTTGAGCTTAGG+AGG | - | chr1_3:35443500-35443519 | None:intergenic | 45.0% |
| !!! | AGCTCAAACCGAGTTTTGAG+GGG | + | chr1_3:35443504-35443523 | Msa0116430:CDS | 45.0% |
| !!! | ATTTTTGAATTAAATTAATT+CGG | - | chr1_3:35438082-35438101 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTAAGATAATAA+GGG | - | chr1_3:35441450-35441469 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATTAAGATAATA+AGG | - | chr1_3:35441451-35441470 | None:intergenic | 5.0% |
| !!! | ATTATAACAAAATTTTAATA+CGG | - | chr1_3:35443779-35443798 | None:intergenic | 5.0% |
| GAGGAGTTGAAGGTGGGAAA+GGG | - | chr1_3:35438058-35438077 | None:intergenic | 50.0% | |
| TGAGGAGTTGAAGGTGGGAA+AGG | - | chr1_3:35438059-35438078 | None:intergenic | 50.0% | |
| TTCGGTGAGGAGTTGAAGGT+GGG | - | chr1_3:35438064-35438083 | None:intergenic | 50.0% | |
| ! | ATTCGGTGAGGAGTTGAAGG+TGG | - | chr1_3:35438065-35438084 | None:intergenic | 50.0% |
| TGCCTTCTCGTTGGATCCAA+TGG | + | chr1_3:35438374-35438393 | Msa0116430:CDS | 50.0% | |
| ! | AATGCTAGCTTGACCCGTAG+GGG | + | chr1_3:35440311-35440330 | Msa0116430:intron | 50.0% |
| ATCCCATAACAACCCCCTAC+GGG | - | chr1_3:35440327-35440346 | None:intergenic | 50.0% | |
| GATCCCATAACAACCCCCTA+CGG | - | chr1_3:35440328-35440347 | None:intergenic | 50.0% | |
| GGGGGTTGTTATGGGATCTA+CGG | + | chr1_3:35440330-35440349 | Msa0116430:intron | 50.0% | |
| GCTAGGGATTAGGGCAAAGT+AGG | + | chr1_3:35440885-35440904 | Msa0116430:intron | 50.0% | |
| GCTCGTGAGGAAACAGATCT+GGG | - | chr1_3:35441378-35441397 | None:intergenic | 50.0% | |
| AGCTCGTGAGGAAACAGATC+TGG | - | chr1_3:35441379-35441398 | None:intergenic | 50.0% | |
| TAATTATGCGCGCTCCTCGA+CGG | + | chr1_3:35443126-35443145 | Msa0116430:intron | 50.0% | |
| GTATTCAAGGTTACCCGTCG+AGG | - | chr1_3:35443143-35443162 | None:intergenic | 50.0% | |
| AGGAAAGAAAGGAAGGCTGC+TGG | + | chr1_3:35443339-35443358 | Msa0116430:CDS | 50.0% | |
| ! | GTTGATGGAAGCCGTGTAGT+TGG | + | chr1_3:35443384-35443403 | Msa0116430:CDS | 50.0% |
| ATGGAAGCCGTGTAGTTGGA+GGG | + | chr1_3:35443388-35443407 | Msa0116430:CDS | 50.0% | |
| CGGTTACATTCCACCATTGC+CGG | + | chr1_3:35443462-35443481 | Msa0116430:CDS | 50.0% | |
| ! | GTTTTCTTCACCGGCAATGG+TGG | - | chr1_3:35443475-35443494 | None:intergenic | 50.0% |
| !!! | GCTCAAACCGAGTTTTGAGG+GGG | + | chr1_3:35443505-35443524 | Msa0116430:CDS | 50.0% |
| GAAAGGGTCCCATGTTATGC+AGG | + | chr1_3:35443635-35443654 | Msa0116430:three_prime_UTR | 50.0% | |
| ! | ATTAGCGGTTTGGAACCCGG+CGG | - | chr1_3:35438317-35438336 | None:intergenic | 55.0% |
| !! | AACGAGAAGGCACCGATCAC+CGG | - | chr1_3:35438366-35438385 | None:intergenic | 55.0% |
| CGCCATTGGATCCAACGAGA+AGG | - | chr1_3:35438379-35438398 | None:intergenic | 55.0% | |
| ! | ATGCTAGCTTGACCCGTAGG+GGG | + | chr1_3:35440312-35440331 | Msa0116430:intron | 55.0% |
| TGACCCGTAGGGGGTTGTTA+TGG | + | chr1_3:35440321-35440340 | Msa0116430:intron | 55.0% | |
| GACCCGTAGGGGGTTGTTAT+GGG | + | chr1_3:35440322-35440341 | Msa0116430:intron | 55.0% | |
| GGATCTACGGCTGAGACGTA+GGG | + | chr1_3:35440343-35440362 | Msa0116430:intron | 55.0% | |
| GATCTACGGCTGAGACGTAG+GGG | + | chr1_3:35440344-35440363 | Msa0116430:intron | 55.0% | |
| ATCTACGGCTGAGACGTAGG+GGG | + | chr1_3:35440345-35440364 | Msa0116430:intron | 55.0% | |
| AATTATGCGCGCTCCTCGAC+GGG | + | chr1_3:35443127-35443146 | Msa0116430:intron | 55.0% | |
| GATGGAAGCCGTGTAGTTGG+AGG | + | chr1_3:35443387-35443406 | Msa0116430:CDS | 55.0% | |
| TGGAAGCCGTGTAGTTGGAG+GGG | + | chr1_3:35443389-35443408 | Msa0116430:CDS | 55.0% | |
| CAGGATCCCCTCCAACTACA+CGG | - | chr1_3:35443398-35443417 | None:intergenic | 55.0% | |
| ACTAATAATGGCTGGGCCGC+AGG | + | chr1_3:35443438-35443457 | Msa0116430:CDS | 55.0% | |
| GGTGGAATGTAACCGACCTG+CGG | - | chr1_3:35443457-35443476 | None:intergenic | 55.0% | |
| GAAGGTGGGAAAGGGAAGCG+TGG | - | chr1_3:35438050-35438069 | None:intergenic | 60.0% | |
| !! | GGAGGATGACCGTCGATTCC+AGG | - | chr1_3:35438296-35438315 | None:intergenic | 60.0% |
| AATCGACGGTCATCCTCCGC+CGG | + | chr1_3:35438298-35438317 | Msa0116430:CDS | 60.0% | |
| ! | GGTGATCGGTGCCTTCTCGT+TGG | + | chr1_3:35438365-35438384 | Msa0116430:CDS | 60.0% |
| CTCGTTGGATCCAATGGCGC+AGG | + | chr1_3:35438380-35438399 | Msa0116430:CDS | 60.0% | |
| GGGATCTACGGCTGAGACGT+AGG | + | chr1_3:35440342-35440361 | Msa0116430:intron | 60.0% | |
| ATAATGGCTGGGCCGCAGGT+CGG | + | chr1_3:35443442-35443461 | Msa0116430:CDS | 60.0% | |
| ATCGACGGTCATCCTCCGCC+GGG | + | chr1_3:35438299-35438318 | Msa0116430:CDS | 65.0% | |
| AGGGGATCCTGCACGAGCTC+CGG | + | chr1_3:35443407-35443426 | Msa0116430:CDS | 65.0% | |
| ACTCGAACCGGAGCTCGTGC+AGG | - | chr1_3:35443417-35443436 | None:intergenic | 65.0% | |
| ! | AGCGGTTTGGAACCCGGCGG+AGG | - | chr1_3:35438314-35438333 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35438027 | 35443818 | 35438027 | ID=Msa0116430;Name=Msa0116430 |
| chr1_3 | mRNA | 35438027 | 35443818 | 35438027 | ID=Msa0116430-mRNA-1;Parent=Msa0116430;Name=Msa0116430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=197|1|1|1|1|1|7|288|333 |
| chr1_3 | exon | 35438027 | 35438401 | 35438027 | ID=Msa0116430-mRNA-1:exon:11326;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35438490 | 35438623 | 35438490 | ID=Msa0116430-mRNA-1:exon:11327;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35441661 | 35441780 | 35441661 | ID=Msa0116430-mRNA-1:exon:11328;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35442521 | 35442616 | 35442521 | ID=Msa0116430-mRNA-1:exon:11329;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35442737 | 35442889 | 35442737 | ID=Msa0116430-mRNA-1:exon:11330;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35442993 | 35443070 | 35442993 | ID=Msa0116430-mRNA-1:exon:11331;Parent=Msa0116430-mRNA-1 |
| chr1_3 | exon | 35443288 | 35443818 | 35443288 | ID=Msa0116430-mRNA-1:exon:11332;Parent=Msa0116430-mRNA-1 |
| chr1_3 | five_prime_UTR | 35438027 | 35438223 | 35438027 | ID=Msa0116430-mRNA-1:five_prime_utr;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35438224 | 35438401 | 35438224 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35438490 | 35438623 | 35438490 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35441661 | 35441780 | 35441661 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35442521 | 35442616 | 35442521 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35442737 | 35442889 | 35442737 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35442993 | 35443070 | 35442993 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | CDS | 35443288 | 35443530 | 35443288 | ID=Msa0116430-mRNA-1:cds;Parent=Msa0116430-mRNA-1 |
| chr1_3 | three_prime_UTR | 35443531 | 35443818 | 35443531 | ID=Msa0116430-mRNA-1:three_prime_utr;Parent=Msa0116430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
