AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223920 MtrunA17_Chr2g0329681 98.507 134 2 0 82 215 181 314 1.97e-95 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223920 AT3G07560.1 64.925 134 36 3 83 213 179 304 7.77e-56 180

Find 177 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATCCCCGCCAGGATTT+TGG 0.077584 2_1:+73656587 Msa0223920:CDS
AATTCATTCATTTAATTTAA+TGG 0.096632 2_1:+73655190 Msa0223920:five_prime_UTR
ACCTGGTGGGTTAACCTTAT+TGG 0.133357 2_1:-73659254 None:intergenic
CCTGGTGGGTTAACCTTATT+GGG 0.187363 2_1:-73659253 None:intergenic
ATCAAAAGAAATGCAATTTA+AGG 0.192093 2_1:-73659768 None:intergenic
GGCATGGGAGTTGGTCCTTA+TGG 0.236544 2_1:+73656529 Msa0223920:CDS
GGCGGCCTTTACGGGTCATC+TGG 0.240841 2_1:+73656439 Msa0223920:CDS
ATGAATTATAATTCTGGATA+TGG 0.252239 2_1:+73656313 Msa0223920:CDS
CCACCTGATGGCGGTCTAAA+AGG 0.267472 2_1:-73656002 None:intergenic
TTCTGCTCCCATGGCCTTGC+GGG 0.273660 2_1:-73656134 None:intergenic
CCTGCTCGTTCCCAAGGTTT+TGG 0.274939 2_1:-73655960 None:intergenic
GGATATGGAGGCGGCCTTTA+CGG 0.276729 2_1:+73656430 Msa0223920:CDS
TCTTTCCCTAGATTGGTTCT+TGG 0.279018 2_1:+73659580 Msa0223920:three_prime_UTR
TCAACAATGAATTATAATTC+TGG 0.282153 2_1:+73656307 Msa0223920:exon
GGTCCAATGGGTGGAATGGG+TGG 0.286819 2_1:+73656502 Msa0223920:CDS
GATCGCTCCGGCATGTTGTA+TGG 0.292681 2_1:+73659184 Msa0223920:CDS
ATATCGCTTAATCGATTATA+TGG 0.302120 2_1:+73655127 Msa0223920:five_prime_UTR
GTGATTATTATTGTTGGAAT+TGG 0.307673 2_1:-73655046 None:intergenic
GTTCATGACCGCCATGCTTC+AGG 0.313874 2_1:+73657263 Msa0223920:CDS
CAAGGACAACACAATTCTTC+TGG 0.315449 2_1:+73659319 Msa0223920:CDS
AGGGGCGCCATATGGATTAT+TGG 0.316399 2_1:-73656566 None:intergenic
GATATGGAGGCGGCCTTTAC+GGG 0.328777 2_1:+73656431 Msa0223920:CDS
TCCCATGGCCTTGCGGGAAC+AGG 0.329132 2_1:-73656128 None:intergenic
ATGTACAGCAGAGGAGGATA+TGG 0.331454 2_1:+73656415 Msa0223920:CDS
TATAATTCTGGATATGGATC+TGG 0.345557 2_1:+73656319 Msa0223920:CDS
AGGCTGCTCCAAGTGGTTCT+TGG 0.350275 2_1:+73659368 Msa0223920:CDS
GGCTGCTCCAAGTGGTTCTT+GGG 0.360698 2_1:+73659369 Msa0223920:CDS
GTAAAACCAAGAACCAATCT+AGG 0.361384 2_1:-73659586 None:intergenic
TCTTCTTATGGTGGCGGGCT+AGG 0.363667 2_1:+73656352 Msa0223920:CDS
AGTGACGTTGTTGAGGCTTC+AGG 0.364377 2_1:+73656032 Msa0223920:five_prime_UTR
AATGGAATGCCTGGGTGTTC+TGG 0.368578 2_1:-73657239 None:intergenic
GGGATGTATGGATCTTCTTA+TGG 0.371652 2_1:+73656340 Msa0223920:CDS
GATCAAAACTAAGCCCAATA+AGG 0.376110 2_1:+73659240 Msa0223920:CDS
CGCATGAATTCACCATATAA+AGG 0.376626 2_1:-73659837 None:intergenic
GGGGCGCCATATGGATTATT+GGG 0.383445 2_1:-73656565 None:intergenic
GAATCAGAACCACCTTTATA+TGG 0.389415 2_1:+73659825 Msa0223920:three_prime_UTR
GTGGTTCTTGGGACAATGTA+TGG 0.393563 2_1:+73659380 Msa0223920:CDS
AGCTATGGAGGCGGAGCATT+AGG 0.394695 2_1:+73656170 Msa0223920:five_prime_UTR
GGCCTGTTCCCGCAAGGCCA+TGG 0.397295 2_1:+73656126 Msa0223920:five_prime_UTR
CAAACGATGACAAGGTATAA+AGG 0.404270 2_1:-73659647 None:intergenic
AGATTTGTGTTGCGGTTGCT+CGG 0.405058 2_1:+73659217 Msa0223920:CDS
GAACCACTTGGAGCAGCCTT+TGG 0.405457 2_1:-73659364 None:intergenic
GGAGGAATGTATGGCGGCGG+TGG 0.409120 2_1:+73656376 Msa0223920:CDS
GATTAAGTGATTATTATTGT+TGG 0.409255 2_1:-73655052 None:intergenic
AGGCCATGGGAGCAGAACTA+TGG 0.409351 2_1:+73656140 Msa0223920:five_prime_UTR
GGAATGTATAATAGTGGCCT+TGG 0.411906 2_1:+73656478 Msa0223920:CDS
ATAGAAGTGCAGCTGTCAAC+AGG 0.419429 2_1:+73656090 Msa0223920:five_prime_UTR
CCTTGATGTGGATATCCATT+TGG 0.423225 2_1:-73659277 None:intergenic
GGGGATGGAGGGGCGCCATA+TGG 0.428067 2_1:-73656574 None:intergenic
GGAATGGGTGGGTATGGCAT+GGG 0.428128 2_1:+73656514 Msa0223920:CDS
ATCGCTCCGGCATGTTGTAT+GGG 0.429054 2_1:+73659185 Msa0223920:CDS
GCTTCAGGGACTGCAAAACC+TGG 0.429633 2_1:+73656047 Msa0223920:five_prime_UTR
GCCTGTTCCCGCAAGGCCAT+GGG 0.436282 2_1:+73656127 Msa0223920:five_prime_UTR
ATGGGTGGAATGGGTGGGTA+TGG 0.437118 2_1:+73656508 Msa0223920:CDS
AATGATTTGGTGAATTTAGT+TGG 0.438093 2_1:+73659434 Msa0223920:exon
AAAATCCTGGCGGGGATGGA+GGG 0.441528 2_1:-73656585 None:intergenic
CAAAATCCTGGCGGGGATGG+AGG 0.442268 2_1:-73656586 None:intergenic
TGGCCTTGCGGGAACAGGCC+TGG 0.442558 2_1:-73656123 None:intergenic
GAAGAAAGTAGAAGAAGGAA+AGG 0.443620 2_1:-73655018 None:intergenic
AACGACGCCAGTCAATGATT+TGG 0.445232 2_1:+73659421 Msa0223920:exon
GAACGAGCAGGTTCTTCATC+TGG 0.445992 2_1:+73655972 Msa0223920:five_prime_UTR
TGGAATGGGTGGGTATGGCA+TGG 0.446511 2_1:+73656513 Msa0223920:CDS
GAATGTATAATAGTGGCCTT+GGG 0.449906 2_1:+73656479 Msa0223920:CDS
TTGACTGGCGTCGTTTCCCC+TGG 0.454644 2_1:-73659413 None:intergenic
GGTGGGTATGGCATGGGAGT+TGG 0.458841 2_1:+73656520 Msa0223920:CDS
GGATATGGATCTGGGATGTA+TGG 0.459083 2_1:+73656328 Msa0223920:CDS
TCATGAACAAATGGAATGCC+TGG 0.459411 2_1:-73657248 None:intergenic
GGGCTAGGAGGAGGAATGTA+TGG 0.464193 2_1:+73656367 Msa0223920:CDS
GTGACGTTGTTGAGGCTTCA+GGG 0.469313 2_1:+73656033 Msa0223920:five_prime_UTR
ATGTATGGGGAAACGACGCC+AGG 0.470523 2_1:+73659395 Msa0223920:CDS
GTTCCATAGTTCTGCTCCCA+TGG 0.473107 2_1:-73656143 None:intergenic
AAATCCTGGCGGGGATGGAG+GGG 0.474565 2_1:-73656584 None:intergenic
AGCAGGTTCTTCATCTGGTC+CGG 0.475423 2_1:+73655977 Msa0223920:five_prime_UTR
TATGGTGGCGGGCTAGGAGG+AGG 0.476228 2_1:+73656358 Msa0223920:CDS
CAAGATCCCAATAATCCATA+TGG 0.477011 2_1:+73656559 Msa0223920:CDS
CCTTGATGTGGATATCCATT+CGG 0.477373 2_1:-73659301 None:intergenic
TACGGGTCATCTGGGATGTA+TGG 0.480642 2_1:+73656448 Msa0223920:CDS
TATGGCGGCGGTGGGATGTA+TGG 0.480847 2_1:+73656385 Msa0223920:CDS
GCCTGATGGTTGTTGAGGGT+TGG 0.483110 2_1:-73655216 None:intergenic
GCATGGCGGTCATGAACAAA+TGG 0.483410 2_1:-73657257 None:intergenic
CTGCAGCTGTTTGATCGCTC+CGG 0.486884 2_1:+73659172 Msa0223920:intron
GATTTGTGTTGCGGTTGCTC+GGG 0.488923 2_1:+73659218 Msa0223920:CDS
GTTAACCCACCAGGTCCAAA+TGG 0.492989 2_1:+73659262 Msa0223920:CDS
GGCGCCCCTCCATCCCCGCC+AGG 0.493180 2_1:+73656580 Msa0223920:CDS
ATCGTTTGCTTTGAATATGC+AGG 0.493654 2_1:+73659662 Msa0223920:three_prime_UTR
ACCTGCCTGATGGTTGTTGA+GGG 0.497362 2_1:-73655220 None:intergenic
ATCACAGAAATCCAAAATCC+TGG 0.497711 2_1:-73656598 None:intergenic
TACCCACCCATTCCACCCAT+TGG 0.498799 2_1:-73656505 None:intergenic
GCGGCCTTTACGGGTCATCT+GGG 0.501313 2_1:+73656440 Msa0223920:CDS
CGATGACAAGGTATAAAGGT+AGG 0.505121 2_1:-73659643 None:intergenic
ATCCAAAATCCTGGCGGGGA+TGG 0.506195 2_1:-73656589 None:intergenic
TATGGATCTTCTTATGGTGG+CGG 0.507227 2_1:+73656346 Msa0223920:CDS
AAGAAGAAGAAAGTAGAAGA+AGG 0.510697 2_1:-73655023 None:intergenic
CCCAATAAGGTTAACCCACC+AGG 0.514994 2_1:+73659253 Msa0223920:CDS
AGCTAGCTAGATTTGTGTTG+CGG 0.519034 2_1:+73659209 Msa0223920:CDS
GTAATCCTCCACCAAAACCT+TGG 0.522026 2_1:+73655949 Msa0223920:five_prime_UTR
GTCCAATGGGTGGAATGGGT+GGG 0.523980 2_1:+73656503 Msa0223920:CDS
CAGAAATCCAAAATCCTGGC+GGG 0.526442 2_1:-73656594 None:intergenic
TAATCCTCCACCAAAACCTT+GGG 0.526755 2_1:+73655950 Msa0223920:five_prime_UTR
GAAGAACCTGCTCGTTCCCA+AGG 0.529137 2_1:-73655966 None:intergenic
AACTATGGAACTAACAGCTA+TGG 0.530564 2_1:+73656155 Msa0223920:five_prime_UTR
GGATCTTGCTCACCACCATA+AGG 0.530634 2_1:-73656544 None:intergenic
TGAAGCCTCAACAACGTCAC+TGG 0.531344 2_1:-73656030 None:intergenic
TCAACAGGAATACTCTTGCC+AGG 0.531855 2_1:+73656105 Msa0223920:five_prime_UTR
GGAGGTGGAATGTATAATAG+TGG 0.533409 2_1:+73656472 Msa0223920:CDS
ACATCCCAGATGACCCGTAA+AGG 0.534147 2_1:-73656444 None:intergenic
TGGTTCTTGGGACAATGTAT+GGG 0.534845 2_1:+73659381 Msa0223920:CDS
TCTGGGATGTATGGAGGAGG+TGG 0.537919 2_1:+73656457 Msa0223920:CDS
ATAATTCTGGATATGGATCT+GGG 0.538222 2_1:+73656320 Msa0223920:CDS
GAGGAATGTATGGCGGCGGT+GGG 0.540547 2_1:+73656377 Msa0223920:CDS
TCTTATGGTGGCGGGCTAGG+AGG 0.544090 2_1:+73656355 Msa0223920:CDS
TCCAACCCTCAACAACCATC+AGG 0.549627 2_1:+73655215 Msa0223920:five_prime_UTR
CTTCAGGGACTGCAAAACCT+GGG 0.551647 2_1:+73656048 Msa0223920:five_prime_UTR
TCACTGGTGCTTCCACCTGA+TGG 0.552065 2_1:-73656014 None:intergenic
GTTCTGCTCCCATGGCCTTG+CGG 0.554289 2_1:-73656135 None:intergenic
AAGAAAGTAGAAGAAGGAAA+GGG 0.556497 2_1:-73655017 None:intergenic
ATGGATCTTCTTATGGTGGC+GGG 0.558812 2_1:+73656347 Msa0223920:CDS
GATGACAAGGTATAAAGGTA+GGG 0.562176 2_1:-73659642 None:intergenic
AAATTCACCAAATCATTGAC+TGG 0.563903 2_1:-73659428 None:intergenic
TAAAGAGAAGAGAGAATCAT+CGG 0.573992 2_1:+73659487 Msa0223920:three_prime_UTR
GCGGTGGTAACAATTTCCCC+AGG 0.574200 2_1:-73656065 None:intergenic
CCAAAACCTTGGGAACGAGC+AGG 0.575227 2_1:+73655960 Msa0223920:five_prime_UTR
TTGCCAGGCCTGTTCCCGCA+AGG 0.576527 2_1:+73656120 Msa0223920:five_prime_UTR
ATCGTTTAATCTTCAACACT+CGG 0.577893 2_1:-73654968 None:intergenic
CCAAATGGATATCCACATCA+AGG 0.578000 2_1:+73659277 Msa0223920:CDS
ATGGGAGTTGGTCCTTATGG+TGG 0.580815 2_1:+73656532 Msa0223920:CDS
AGCAGAGGAGGATATGGAGG+CGG 0.581294 2_1:+73656421 Msa0223920:CDS
GATGGCGGTCTAAAAGGTGC+CGG 0.586310 2_1:-73655996 None:intergenic
TAAAACCAAGAACCAATCTA+GGG 0.586750 2_1:-73659585 None:intergenic
AACAGTATGTACAGCAGAGG+AGG 0.586968 2_1:+73656409 Msa0223920:CDS
GGATATCCATTTGGACCTGG+TGG 0.590485 2_1:-73659268 None:intergenic
CCGAATGGATATCCACATCA+AGG 0.592200 2_1:+73659301 Msa0223920:CDS
GAACTACATTGAGGCACCAA+AGG 0.592481 2_1:+73659348 Msa0223920:CDS
AACCTGCCTGATGGTTGTTG+AGG 0.594558 2_1:-73655221 None:intergenic
TGGAAATATGAACTACATTG+AGG 0.595063 2_1:+73659339 Msa0223920:CDS
ACCCTCAACAACCATCAGGC+AGG 0.595545 2_1:+73655219 Msa0223920:five_prime_UTR
AAGCACCAGTGACGTTGTTG+AGG 0.597333 2_1:+73656025 Msa0223920:five_prime_UTR
TGTATGGGGAAACGACGCCA+GGG 0.597357 2_1:+73659396 Msa0223920:CDS
GATATCCATTTGGACCTGGT+GGG 0.605480 2_1:-73659267 None:intergenic
TGTGGATATCCATTTGGACC+TGG 0.607010 2_1:-73659271 None:intergenic
TATCCATTCGGACCTTGATG+TGG 0.609031 2_1:-73659289 None:intergenic
AAGAGAAGGAACCTGCCTGA+TGG 0.611130 2_1:-73655230 None:intergenic
GGGTCATCTGGGATGTATGG+AGG 0.612746 2_1:+73656451 Msa0223920:CDS
TCATCTGGGATGTATGGAGG+AGG 0.613106 2_1:+73656454 Msa0223920:CDS
GGAGGAGGAATGTATGGCGG+CGG 0.613316 2_1:+73656373 Msa0223920:CDS
TATGGAGGCGGAGCATTAGG+TGG 0.613578 2_1:+73656173 Msa0223920:five_prime_UTR
AGAAATCCAAAATCCTGGCG+GGG 0.617224 2_1:-73656593 None:intergenic
TGAAGGCCAAACCTGAAGCA+TGG 0.620054 2_1:-73657274 None:intergenic
TCCCTCTAATGACAGATGCA+AGG 0.623000 2_1:+73657177 Msa0223920:intron
TATGGAACTAACAGCTATGG+AGG 0.623963 2_1:+73656158 Msa0223920:five_prime_UTR
TATCCACATCAAGGTCCGAA+TGG 0.625125 2_1:+73659286 Msa0223920:CDS
TCGCTCCGGCATGTTGTATG+GGG 0.625990 2_1:+73659186 Msa0223920:CDS
GAATTGTGTTGTCCTTGATG+TGG 0.630820 2_1:-73659313 None:intergenic
ATTCAAAGCAAACGATGACA+AGG 0.631389 2_1:-73659655 None:intergenic
GACAGCTGCACTTCTATCAG+CGG 0.631522 2_1:-73656084 None:intergenic
AGCTGCACTTCTATCAGCGG+TGG 0.632546 2_1:-73656081 None:intergenic
ATGTATGGATCTTCTTATGG+TGG 0.634817 2_1:+73656343 Msa0223920:CDS
ATGTATAATAGTGGCCTTGG+GGG 0.637094 2_1:+73656481 Msa0223920:CDS
TACAGCAGAGGAGGATATGG+AGG 0.641000 2_1:+73656418 Msa0223920:CDS
GGAACTAACAGCTATGGAGG+CGG 0.643368 2_1:+73656161 Msa0223920:five_prime_UTR
TAGCTCCCCATACAACATGC+CGG 0.652289 2_1:-73659191 None:intergenic
CATGAACAAATGGAATGCCT+GGG 0.654364 2_1:-73657247 None:intergenic
TTCAGGGACTGCAAAACCTG+GGG 0.655475 2_1:+73656049 Msa0223920:five_prime_UTR
GCACCAAAGGCTGCTCCAAG+TGG 0.656086 2_1:+73659361 Msa0223920:CDS
ATGAATTCACCATATAAAGG+TGG 0.658605 2_1:-73659834 None:intergenic
CTGGTGCTTCCACCTGATGG+CGG 0.660777 2_1:-73656011 None:intergenic
GGTAACAGTATGTACAGCAG+AGG 0.662539 2_1:+73656406 Msa0223920:CDS
GGTTCTTGGGACAATGTATG+GGG 0.663209 2_1:+73659382 Msa0223920:CDS
ACATTGTCCCAAGAACCACT+TGG 0.663833 2_1:-73659376 None:intergenic
TTGGATTTCTGTGATGCGCG+TGG 0.668922 2_1:+73656606 Msa0223920:CDS
AATGTATAATAGTGGCCTTG+GGG 0.671966 2_1:+73656480 Msa0223920:CDS
CTAATGACAGATGCAAGGTG+TGG 0.679662 2_1:+73657182 Msa0223920:intron
ACAGAAATCCAAAATCCTGG+CGG 0.699964 2_1:-73656595 None:intergenic
ACTCATTGACCAGAACACCC+AGG 0.704088 2_1:+73657230 Msa0223920:CDS
GTATGGGGAAACGACGCCAG+GGG 0.710787 2_1:+73659397 Msa0223920:CDS
CTAGGAGGAGGAATGTATGG+CGG 0.720908 2_1:+73656370 Msa0223920:CDS
AGGCCAAACCTGAAGCATGG+CGG 0.759020 2_1:-73657271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATATTTTTTTTTTA+TGG - chr2_1:73655509-73655528 None:intergenic 0.0%
!!! AATTCATTCATTTAATTTAA+TGG + chr2_1:73655190-73655209 Msa0223920:five_prime_UTR 10.0%
!!! TATTTTTTTTTTATGGATTA+AGG - chr2_1:73655502-73655521 None:intergenic 10.0%
!! AAAGAAAGAAAAAAAAAGAA+AGG + chr2_1:73655092-73655111 Msa0223920:five_prime_UTR 15.0%
!! AAGAAAGAAAAAAAAAGAAA+GGG + chr2_1:73655093-73655112 Msa0223920:five_prime_UTR 15.0%
!!! GATTTAATTTAATAGAAAAG+AGG - chr2_1:73655259-73655278 None:intergenic 15.0%
!! TCATATTAAAATAATCCAAA+GGG - chr2_1:73657093-73657112 None:intergenic 15.0%
!! TTCATATTAAAATAATCCAA+AGG - chr2_1:73657094-73657113 None:intergenic 15.0%
!!! TTCAATCTTTAAAAAAACAT+GGG - chr2_1:73657348-73657367 None:intergenic 15.0%
!!! TTTCAATCTTTAAAAAAACA+TGG - chr2_1:73657349-73657368 None:intergenic 15.0%
!! GAATCACAATTATAAAATAA+TGG - chr2_1:73657703-73657722 None:intergenic 15.0%
!!! TTATTTCTAGTATCAAATTA+TGG + chr2_1:73658666-73658685 Msa0223920:intron 15.0%
!! AAATTGTATAATGTTAATTG+AGG + chr2_1:73658711-73658730 Msa0223920:intron 15.0%
!! GATTAAGTGATTATTATTGT+TGG - chr2_1:73655055-73655074 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTTTCAG+CGG - chr2_1:73655089-73655108 None:intergenic 20.0%
!!! TATTGTCTTTGTTATAGAAA+CGG - chr2_1:73655653-73655672 None:intergenic 20.0%
!! AAGTAAAATCATTGTGAAAT+GGG - chr2_1:73655906-73655925 None:intergenic 20.0%
!! AAAGTAAAATCATTGTGAAA+TGG - chr2_1:73655907-73655926 None:intergenic 20.0%
!!! TTAAATAAATTTTGTGTTGC+AGG + chr2_1:73655927-73655946 Msa0223920:intron 20.0%
!! TCAACAATGAATTATAATTC+TGG + chr2_1:73656307-73656326 Msa0223920:exon 20.0%
!! ATGAATTATAATTCTGGATA+TGG + chr2_1:73656313-73656332 Msa0223920:CDS 20.0%
!!! AACATTGTGTATTTGTTTTT+AGG + chr2_1:73657002-73657021 Msa0223920:intron 20.0%
!!! ACATTGTGTATTTGTTTTTA+GGG + chr2_1:73657003-73657022 Msa0223920:intron 20.0%
!! TTTAAAAAAACATGGGAAAT+GGG - chr2_1:73657341-73657360 None:intergenic 20.0%
!!! TGGTTTTGGATTTTTTTTTA+TGG + chr2_1:73657467-73657486 Msa0223920:intron 20.0%
!!! TATTTTACTTTTCCAATGTT+AGG - chr2_1:73658183-73658202 None:intergenic 20.0%
!! TTTACTTCATACAAAAACAA+CGG - chr2_1:73658485-73658504 None:intergenic 20.0%
!!! GAAAAGTTGATTTGTTAAAT+AGG - chr2_1:73658581-73658600 None:intergenic 20.0%
!!! AACAAATCAACTTTTCATAT+TGG + chr2_1:73658585-73658604 Msa0223920:intron 20.0%
!! ATCATTGAATCTATGTTATA+TGG + chr2_1:73658754-73658773 Msa0223920:intron 20.0%
!! ATCAAAATGAATATCACAAA+AGG - chr2_1:73659033-73659052 None:intergenic 20.0%
!!! TTTAATTTTAGATGATCACT+TGG + chr2_1:73659143-73659162 Msa0223920:intron 20.0%
!! ACAAAAATAATACATGTACT+TGG - chr2_1:73659700-73659719 None:intergenic 20.0%
!! ATCAAAAGAAATGCAATTTA+AGG - chr2_1:73659771-73659790 None:intergenic 20.0%
! GTGATTATTATTGTTGGAAT+TGG - chr2_1:73655049-73655068 None:intergenic 25.0%
! AGAAAAAAAAAGAAAGGGTT+TGG + chr2_1:73655098-73655117 Msa0223920:five_prime_UTR 25.0%
! ATATCGCTTAATCGATTATA+TGG + chr2_1:73655127-73655146 Msa0223920:five_prime_UTR 25.0%
! TAATGAATTGATGTGGTAAA+CGG - chr2_1:73655313-73655332 None:intergenic 25.0%
! ACAATTGTAATGAATTGATG+TGG - chr2_1:73655320-73655339 None:intergenic 25.0%
! ATTGAAACGAAAAAGAACAA+GGG - chr2_1:73655378-73655397 None:intergenic 25.0%
! AATTGAAACGAAAAAGAACA+AGG - chr2_1:73655379-73655398 None:intergenic 25.0%
! ATTCCTGGTATAATAAATCA+AGG + chr2_1:73655544-73655563 Msa0223920:intron 25.0%
! ACTAATTTGAGCTTATCTAA+TGG - chr2_1:73655803-73655822 None:intergenic 25.0%
! TTTATAGTATCACACATTGA+GGG - chr2_1:73655839-73655858 None:intergenic 25.0%
!!! TTATTTTTCTTACAATCTGC+AGG + chr2_1:73656277-73656296 Msa0223920:intron 25.0%
!!! TAAGTTCCAAAAGTATCATA+TGG - chr2_1:73656636-73656655 None:intergenic 25.0%
!!! GAACTTATTTTTTCTTCCAT+GGG + chr2_1:73656649-73656668 Msa0223920:intron 25.0%
! TTTCCGATTAAACTGTATTT+AGG + chr2_1:73656786-73656805 Msa0223920:intron 25.0%
! TGTCCTAAATACAGTTTAAT+CGG - chr2_1:73656792-73656811 None:intergenic 25.0%
!! AGGACAATATATTTTGTCTT+TGG + chr2_1:73656806-73656825 Msa0223920:intron 25.0%
! TAACTAATATCATGAACATG+AGG - chr2_1:73656858-73656877 None:intergenic 25.0%
! TCATGTTCATGATATTAGTT+AGG + chr2_1:73656857-73656876 Msa0223920:intron 25.0%
! ATAAACAAATCACAAGAAAG+AGG - chr2_1:73657304-73657323 None:intergenic 25.0%
!! CTTTAAAAAAACATGGGAAA+TGG - chr2_1:73657342-73657361 None:intergenic 25.0%
!!! GAATTGTGATTTTTTTGCTT+TGG + chr2_1:73657414-73657433 Msa0223920:intron 25.0%
!! TTTTTATGGTTATCAAACTC+AGG + chr2_1:73657481-73657500 Msa0223920:intron 25.0%
!! TTTTATGGTTATCAAACTCA+GGG + chr2_1:73657482-73657501 Msa0223920:intron 25.0%
! AAATTCACAAATCATGAGAT+AGG - chr2_1:73657678-73657697 None:intergenic 25.0%
! CCAATATATTAAACTCAGAT+GGG - chr2_1:73657755-73657774 None:intergenic 25.0%
! ACCAATATATTAAACTCAGA+TGG - chr2_1:73657756-73657775 None:intergenic 25.0%
! AATTCTGTTATATACTTCGA+TGG + chr2_1:73657849-73657868 Msa0223920:intron 25.0%
!!! TATTTTCTGATAATGTCCAA+AGG - chr2_1:73658646-73658665 None:intergenic 25.0%
! TAGTATCAAATTATGGAAAC+AGG + chr2_1:73658673-73658692 Msa0223920:intron 25.0%
! AGATTCAATGATTCTTAAAC+TGG - chr2_1:73658746-73658765 None:intergenic 25.0%
! ATAAAATGCAATTATGGAAC+GGG - chr2_1:73659105-73659124 None:intergenic 25.0%
! GATAAAATGCAATTATGGAA+CGG - chr2_1:73659106-73659125 None:intergenic 25.0%
! CACATGATAAAATGCAATTA+TGG - chr2_1:73659111-73659130 None:intergenic 25.0%
!!! AATGATTTGGTGAATTTAGT+TGG + chr2_1:73659434-73659453 Msa0223920:exon 25.0%
ATCGTTTAATCTTCAACACT+CGG - chr2_1:73654971-73654990 None:intergenic 30.0%
AAGAAAGTAGAAGAAGGAAA+GGG - chr2_1:73655020-73655039 None:intergenic 30.0%
AAGAAGAAGAAAGTAGAAGA+AGG - chr2_1:73655026-73655045 None:intergenic 30.0%
! AAAAAGAAAGGGTTTGGAAT+TGG + chr2_1:73655104-73655123 Msa0223920:five_prime_UTR 30.0%
GTCTCTATCATCAATTTCTT+CGG + chr2_1:73655340-73655359 Msa0223920:intron 30.0%
! AAAAGAACAAGGGGATTTTA+GGG - chr2_1:73655368-73655387 None:intergenic 30.0%
! AAAAAGAACAAGGGGATTTT+AGG - chr2_1:73655369-73655388 None:intergenic 30.0%
TTGAAACGAAAAAGAACAAG+GGG - chr2_1:73655377-73655396 None:intergenic 30.0%
GATTGAAATTGAACTACGAT+TGG - chr2_1:73655436-73655455 None:intergenic 30.0%
!!! TCACTTTTTTTCTTCATTCC+TGG + chr2_1:73655529-73655548 Msa0223920:intron 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr2_1:73655599-73655618 None:intergenic 30.0%
GAACTTACAAAAACAGCTTA+TGG - chr2_1:73655766-73655785 None:intergenic 30.0%
TCAAATTAGTCAATCCAAAC+AGG + chr2_1:73655813-73655832 Msa0223920:intron 30.0%
CTTTATAGTATCACACATTG+AGG - chr2_1:73655840-73655859 None:intergenic 30.0%
TTGTAGTTCATTATTGAACG+TGG + chr2_1:73655879-73655898 Msa0223920:intron 30.0%
CAAACAAGGAAAATGTTGAA+AGG - chr2_1:73656230-73656249 None:intergenic 30.0%
TACAAAAGATCACGTGAAAT+AGG - chr2_1:73656253-73656272 None:intergenic 30.0%
TATAATTCTGGATATGGATC+TGG + chr2_1:73656319-73656338 Msa0223920:CDS 30.0%
ATAATTCTGGATATGGATCT+GGG + chr2_1:73656320-73656339 Msa0223920:CDS 30.0%
!!! GGAACTTATTTTTTCTTCCA+TGG + chr2_1:73656648-73656667 Msa0223920:intron 30.0%
ATGTTGATCAATTATTCCCA+TGG - chr2_1:73656668-73656687 None:intergenic 30.0%
TAATTGATCAACATGTACCA+TGG + chr2_1:73656674-73656693 Msa0223920:intron 30.0%
!!! TTTTTCCCGTTTTGTTTAAC+TGG + chr2_1:73656703-73656722 Msa0223920:intron 30.0%
ACAATCCAGTTAAACAAAAC+GGG - chr2_1:73656711-73656730 None:intergenic 30.0%
CACAATCCAGTTAAACAAAA+CGG - chr2_1:73656712-73656731 None:intergenic 30.0%
! TGACATTTTCATGTTTGCAA+TGG + chr2_1:73656758-73656777 Msa0223920:intron 30.0%
TCATGATATTAGTTAGGAGT+AGG + chr2_1:73656863-73656882 Msa0223920:intron 30.0%
AGAAACAGTAATCATGTTAG+TGG + chr2_1:73656919-73656938 Msa0223920:intron 30.0%
GATACAAAGAGTTTCATTAC+AGG - chr2_1:73656945-73656964 None:intergenic 30.0%
AATCCAAAGGGAAAAAAAAG+AGG - chr2_1:73657081-73657100 None:intergenic 30.0%
!! TTATTTGTTGTCCGCAAATA+TGG + chr2_1:73657133-73657152 Msa0223920:intron 30.0%
!!! CAAGGTGTGGTTAATTTTTT+CGG + chr2_1:73657195-73657214 Msa0223920:CDS 30.0%
CACTAAAGCTTATACATACA+AGG + chr2_1:73657442-73657461 Msa0223920:intron 30.0%
AAGCTTATACATACAAGGAT+TGG + chr2_1:73657447-73657466 Msa0223920:intron 30.0%
!!! ATACATACAAGGATTGGTTT+TGG + chr2_1:73657453-73657472 Msa0223920:intron 30.0%
GCACATAAAAATAGCATAAC+AGG - chr2_1:73657637-73657656 None:intergenic 30.0%
CCCATCTGAGTTTAATATAT+TGG + chr2_1:73657752-73657771 Msa0223920:intron 30.0%
AGCAAATCATAATACCGAAT+TGG - chr2_1:73657785-73657804 None:intergenic 30.0%
! TTTTGTAAAAGATGAACCAG+TGG + chr2_1:73657969-73657988 Msa0223920:intron 30.0%
! AAAGTTGTCCAAAAAGTATG+CGG + chr2_1:73658608-73658627 Msa0223920:intron 30.0%
ATAATGTTAATTGAGGTTCG+TGG + chr2_1:73658718-73658737 Msa0223920:intron 30.0%
! GTCTGGATACAAACATTTTA+AGG + chr2_1:73658828-73658847 Msa0223920:intron 30.0%
TGATGAACAACAACATATTC+AGG + chr2_1:73658867-73658886 Msa0223920:intron 30.0%
!!! CTTTTTTTCTTCAGAAAAGC+AGG - chr2_1:73658914-73658933 None:intergenic 30.0%
AAGGTAAAATGAGTGCAATT+TGG - chr2_1:73658948-73658967 None:intergenic 30.0%
TGGAAATATGAACTACATTG+AGG + chr2_1:73659339-73659358 Msa0223920:CDS 30.0%
AAATTCACCAAATCATTGAC+TGG - chr2_1:73659431-73659450 None:intergenic 30.0%
TAAAGAGAAGAGAGAATCAT+CGG + chr2_1:73659487-73659506 Msa0223920:three_prime_UTR 30.0%
TAAAACCAAGAACCAATCTA+GGG - chr2_1:73659588-73659607 None:intergenic 30.0%
ATGAATTCACCATATAAAGG+TGG - chr2_1:73659837-73659856 None:intergenic 30.0%
GAAGAAAGTAGAAGAAGGAA+AGG - chr2_1:73655021-73655040 None:intergenic 35.0%
TAGAAAAGAGGAGAAAGAGA+AGG - chr2_1:73655247-73655266 None:intergenic 35.0%
GAGCCTTGATTTATTATACC+AGG - chr2_1:73655550-73655569 None:intergenic 35.0%
TAGAAACGGCTATAGAAAAG+TGG - chr2_1:73655639-73655658 None:intergenic 35.0%
AACTATGGAACTAACAGCTA+TGG + chr2_1:73656155-73656174 Msa0223920:five_prime_UTR 35.0%
TTCTTACAATCTGCAGGATA+CGG + chr2_1:73656283-73656302 Msa0223920:intron 35.0%
ATGTATGGATCTTCTTATGG+TGG + chr2_1:73656343-73656362 Msa0223920:CDS 35.0%
GAATGTATAATAGTGGCCTT+GGG + chr2_1:73656479-73656498 Msa0223920:CDS 35.0%
! AATGTATAATAGTGGCCTTG+GGG + chr2_1:73656480-73656499 Msa0223920:CDS 35.0%
CAAGATCCCAATAATCCATA+TGG + chr2_1:73656559-73656578 Msa0223920:CDS 35.0%
ATCACAGAAATCCAAAATCC+TGG - chr2_1:73656601-73656620 None:intergenic 35.0%
! GGTAAGCCATATGATACTTT+TGG + chr2_1:73656627-73656646 Msa0223920:intron 35.0%
TCATATGCAGCTTTACTAAC+TGG - chr2_1:73656977-73656996 None:intergenic 35.0%
AAAAAAGAGGAGAGAAGCAA+TGG - chr2_1:73657068-73657087 None:intergenic 35.0%
!!! TCTCCTCTTTTTTTTCCCTT+TGG + chr2_1:73657075-73657094 Msa0223920:intron 35.0%
ACATGTACCAACCATATTTG+CGG - chr2_1:73657147-73657166 None:intergenic 35.0%
!!! GTGTGGTTAATTTTTTCGGT+CGG + chr2_1:73657199-73657218 Msa0223920:CDS 35.0%
! ACAAGGTTTAAAACGAGTGA+AGG - chr2_1:73657581-73657600 None:intergenic 35.0%
!! ACTCGTTTTAAACCTTGTGA+CGG + chr2_1:73657583-73657602 Msa0223920:intron 35.0%
CATAACAGGTTCAAAGTCTA+TGG - chr2_1:73657623-73657642 None:intergenic 35.0%
CTATGTTTGTGCATTTGTGT+TGG + chr2_1:73657722-73657741 Msa0223920:intron 35.0%
! ATATTGGTTGCTGTCCAATT+CGG + chr2_1:73657768-73657787 Msa0223920:intron 35.0%
TGAATTCTGTGACTATGCAA+CGG - chr2_1:73657884-73657903 None:intergenic 35.0%
ACTCTTCTATCCCTGTTATA+TGG - chr2_1:73658053-73658072 None:intergenic 35.0%
ATGCACAGTGTTAAATGCTT+TGG + chr2_1:73658118-73658137 Msa0223920:intron 35.0%
ATCAATAATCCGGTACGTTA+GGG - chr2_1:73658394-73658413 None:intergenic 35.0%
TATCAATAATCCGGTACGTT+AGG - chr2_1:73658395-73658414 None:intergenic 35.0%
TTCGCCATCTATCAATAATC+CGG - chr2_1:73658404-73658423 None:intergenic 35.0%
GAAGATCTTACGAGTTTATG+CGG + chr2_1:73658533-73658552 Msa0223920:intron 35.0%
!! TTGTGATGTGTTAACTTGTC+TGG + chr2_1:73658811-73658830 Msa0223920:intron 35.0%
GATCAAAACTAAGCCCAATA+AGG + chr2_1:73659240-73659259 Msa0223920:CDS 35.0%
!! CTGTTTTTCTTTCCCTAGAT+TGG + chr2_1:73659573-73659592 Msa0223920:three_prime_UTR 35.0%
GTAAAACCAAGAACCAATCT+AGG - chr2_1:73659589-73659608 None:intergenic 35.0%
!!! AGATTGGTTCTTGGTTTTAC+TGG + chr2_1:73659589-73659608 Msa0223920:three_prime_UTR 35.0%
GATGACAAGGTATAAAGGTA+GGG - chr2_1:73659645-73659664 None:intergenic 35.0%
CAAACGATGACAAGGTATAA+AGG - chr2_1:73659650-73659669 None:intergenic 35.0%
ATTCAAAGCAAACGATGACA+AGG - chr2_1:73659658-73659677 None:intergenic 35.0%
! ATCGTTTGCTTTGAATATGC+AGG + chr2_1:73659662-73659681 Msa0223920:three_prime_UTR 35.0%
GAATCAGAACCACCTTTATA+TGG + chr2_1:73659825-73659844 Msa0223920:three_prime_UTR 35.0%
CGCATGAATTCACCATATAA+AGG - chr2_1:73659840-73659859 None:intergenic 35.0%
! ATCAGAGAGATTGCTTGTTG+TGG + chr2_1:73655453-73655472 Msa0223920:intron 40.0%
!! TCAGAGAGATTGCTTGTTGT+GGG + chr2_1:73655454-73655473 Msa0223920:intron 40.0%
TTCTTCTTCTCACAACAGCT+GGG - chr2_1:73655575-73655594 None:intergenic 40.0%
ATTCTTCTTCTCACAACAGC+TGG - chr2_1:73655576-73655595 None:intergenic 40.0%
GTGAGAAGAAGAATCCTGTT+TGG + chr2_1:73655582-73655601 Msa0223920:intron 40.0%
TAATCCTCCACCAAAACCTT+GGG + chr2_1:73655950-73655969 Msa0223920:five_prime_UTR 40.0%
TATGGAACTAACAGCTATGG+AGG + chr2_1:73656158-73656177 Msa0223920:five_prime_UTR 40.0%
TCACGTGAAATAGGCAAACA+AGG - chr2_1:73656244-73656263 None:intergenic 40.0%
GGGATGTATGGATCTTCTTA+TGG + chr2_1:73656340-73656359 Msa0223920:CDS 40.0%
TATGGATCTTCTTATGGTGG+CGG + chr2_1:73656346-73656365 Msa0223920:CDS 40.0%
GGAGGTGGAATGTATAATAG+TGG + chr2_1:73656472-73656491 Msa0223920:CDS 40.0%
GGAATGTATAATAGTGGCCT+TGG + chr2_1:73656478-73656497 Msa0223920:CDS 40.0%
! ATGTATAATAGTGGCCTTGG+GGG + chr2_1:73656481-73656500 Msa0223920:CDS 40.0%
ACAGAAATCCAAAATCCTGG+CGG - chr2_1:73656598-73656617 None:intergenic 40.0%
AACGGGAAAAACATTGACCA+TGG - chr2_1:73656694-73656713 None:intergenic 40.0%
TTGTTGTCCGCAAATATGGT+TGG + chr2_1:73657137-73657156 Msa0223920:intron 40.0%
ACCTTGCATCTGTCATTAGA+GGG - chr2_1:73657181-73657200 None:intergenic 40.0%
CATGAACAAATGGAATGCCT+GGG - chr2_1:73657250-73657269 None:intergenic 40.0%
TCATGAACAAATGGAATGCC+TGG - chr2_1:73657251-73657270 None:intergenic 40.0%
CACAAGAAAGAGGACAATGA+AGG - chr2_1:73657294-73657313 None:intergenic 40.0%
! TAAAACGAGTGAAGGTTGGT+GGG - chr2_1:73657573-73657592 None:intergenic 40.0%
TTAAAACGAGTGAAGGTTGG+TGG - chr2_1:73657574-73657593 None:intergenic 40.0%
! GGTTTAAAACGAGTGAAGGT+TGG - chr2_1:73657577-73657596 None:intergenic 40.0%
AACCACGAATTTGTACGAAC+CGG - chr2_1:73657945-73657964 None:intergenic 40.0%
TGTAAAAGATGAACCAGTGG+CGG + chr2_1:73657972-73657991 Msa0223920:intron 40.0%
AGAAAACGGTGAAGATGATG+CGG + chr2_1:73658016-73658035 Msa0223920:intron 40.0%
TTCTCTCTCCTCCATATAAC+AGG + chr2_1:73658039-73658058 Msa0223920:intron 40.0%
TCTCTCTCCTCCATATAACA+GGG + chr2_1:73658040-73658059 Msa0223920:intron 40.0%
CTTCTATCCCTGTTATATGG+AGG - chr2_1:73658050-73658069 None:intergenic 40.0%
! TTTTCCAATGTTAGGTCACG+TGG - chr2_1:73658175-73658194 None:intergenic 40.0%
TCAATAATCCGGTACGTTAG+GGG - chr2_1:73658393-73658412 None:intergenic 40.0%
CGTACCGGATTATTGATAGA+TGG + chr2_1:73658397-73658416 Msa0223920:intron 40.0%
! CAGTTTCACCGCATACTTTT+TGG - chr2_1:73658619-73658638 None:intergenic 40.0%
!! AAGCAGGACAAAGTTGCTTT+TGG - chr2_1:73658898-73658917 None:intergenic 40.0%
TCAAGCAGTATGTGCTCAAA+AGG - chr2_1:73658967-73658986 None:intergenic 40.0%
TTCTTTGAACTTGCCAACAC+TGG + chr2_1:73659076-73659095 Msa0223920:intron 40.0%
TCTTTGAACTTGCCAACACT+GGG + chr2_1:73659077-73659096 Msa0223920:intron 40.0%
AGCTAGCTAGATTTGTGTTG+CGG + chr2_1:73659209-73659228 Msa0223920:CDS 40.0%
CCTTGATGTGGATATCCATT+TGG - chr2_1:73659280-73659299 None:intergenic 40.0%
CCAAATGGATATCCACATCA+AGG + chr2_1:73659277-73659296 Msa0223920:CDS 40.0%
CCTTGATGTGGATATCCATT+CGG - chr2_1:73659280-73659299 None:intergenic 40.0%
GAATTGTGTTGTCCTTGATG+TGG - chr2_1:73659316-73659335 None:intergenic 40.0%
CAAGGACAACACAATTCTTC+TGG + chr2_1:73659319-73659338 Msa0223920:CDS 40.0%
TGGTTCTTGGGACAATGTAT+GGG + chr2_1:73659381-73659400 Msa0223920:CDS 40.0%
! TCTTTCCCTAGATTGGTTCT+TGG + chr2_1:73659580-73659599 Msa0223920:three_prime_UTR 40.0%
!!! GTTCTTGGTTTTACTGGAAG+CGG + chr2_1:73659595-73659614 Msa0223920:three_prime_UTR 40.0%
!!! TTCTTGGTTTTACTGGAAGC+GGG + chr2_1:73659596-73659615 Msa0223920:three_prime_UTR 40.0%
CGATGACAAGGTATAAAGGT+AGG - chr2_1:73659646-73659665 None:intergenic 40.0%
! GCATAACTGCTGAAGTTTTG+TGG + chr2_1:73659741-73659760 Msa0223920:three_prime_UTR 40.0%
GTAATCCTCCACCAAAACCT+TGG + chr2_1:73655949-73655968 Msa0223920:five_prime_UTR 45.0%
! ATAGAAGTGCAGCTGTCAAC+AGG + chr2_1:73656090-73656109 Msa0223920:five_prime_UTR 45.0%
TCAACAGGAATACTCTTGCC+AGG + chr2_1:73656105-73656124 Msa0223920:five_prime_UTR 45.0%
! GGATATGGATCTGGGATGTA+TGG + chr2_1:73656328-73656347 Msa0223920:CDS 45.0%
ATGGATCTTCTTATGGTGGC+GGG + chr2_1:73656347-73656366 Msa0223920:CDS 45.0%
GGTAACAGTATGTACAGCAG+AGG + chr2_1:73656406-73656425 Msa0223920:CDS 45.0%
AACAGTATGTACAGCAGAGG+AGG + chr2_1:73656409-73656428 Msa0223920:CDS 45.0%
ATGTACAGCAGAGGAGGATA+TGG + chr2_1:73656415-73656434 Msa0223920:CDS 45.0%
AGAAATCCAAAATCCTGGCG+GGG - chr2_1:73656596-73656615 None:intergenic 45.0%
CAGAAATCCAAAATCCTGGC+GGG - chr2_1:73656597-73656616 None:intergenic 45.0%
GATTTCCTGTGAGCAATGTG+AGG + chr2_1:73656885-73656904 Msa0223920:intron 45.0%
CACTCTTCTTACTCTTACCG+TGG + chr2_1:73657038-73657057 Msa0223920:intron 45.0%
AAAGAGGAGAGAAGCAATGG+TGG - chr2_1:73657065-73657084 None:intergenic 45.0%
TCCCTCTAATGACAGATGCA+AGG + chr2_1:73657177-73657196 Msa0223920:intron 45.0%
CACCTTGCATCTGTCATTAG+AGG - chr2_1:73657182-73657201 None:intergenic 45.0%
CTAATGACAGATGCAAGGTG+TGG + chr2_1:73657182-73657201 Msa0223920:intron 45.0%
AGCTAGAACGCATCAGAGTT+GGG - chr2_1:73657516-73657535 None:intergenic 45.0%
TATGTTGAATCCCACGAGCT+AGG + chr2_1:73657537-73657556 Msa0223920:intron 45.0%
ATGTTGAATCCCACGAGCTA+GGG + chr2_1:73657538-73657557 Msa0223920:intron 45.0%
AAGTTGACAACTCCGTCACA+AGG - chr2_1:73657598-73657617 None:intergenic 45.0%
!! AATTGGTTCGCGGTTCTCAT+GGG - chr2_1:73657914-73657933 None:intergenic 45.0%
CGAATTTGTACGAACCGGTA+CGG - chr2_1:73657940-73657959 None:intergenic 45.0%
!! TACCGGTTCGTACAAATTCG+TGG + chr2_1:73657940-73657959 Msa0223920:intron 45.0%
GCTTCAAGCCACAGAGAAAA+CGG + chr2_1:73658002-73658021 Msa0223920:intron 45.0%
! CATCTTCACCGTTTTCTCTG+TGG - chr2_1:73658013-73658032 None:intergenic 45.0%
AACAACGGATCATAGTCACC+AGG - chr2_1:73658470-73658489 None:intergenic 45.0%
GCGGTGAAACTGTTATCCTT+TGG + chr2_1:73658627-73658646 Msa0223920:intron 45.0%
AGATTTGTGTTGCGGTTGCT+CGG + chr2_1:73659217-73659236 Msa0223920:CDS 45.0%
!! CCTGGTGGGTTAACCTTATT+GGG - chr2_1:73659256-73659275 None:intergenic 45.0%
!! ACCTGGTGGGTTAACCTTAT+TGG - chr2_1:73659257-73659276 None:intergenic 45.0%
GATATCCATTTGGACCTGGT+GGG - chr2_1:73659270-73659289 None:intergenic 45.0%
TGTGGATATCCATTTGGACC+TGG - chr2_1:73659274-73659293 None:intergenic 45.0%
TATCCACATCAAGGTCCGAA+TGG + chr2_1:73659286-73659305 Msa0223920:CDS 45.0%
TATCCATTCGGACCTTGATG+TGG - chr2_1:73659292-73659311 None:intergenic 45.0%
CCGAATGGATATCCACATCA+AGG + chr2_1:73659301-73659320 Msa0223920:CDS 45.0%
! GAACTACATTGAGGCACCAA+AGG + chr2_1:73659348-73659367 Msa0223920:CDS 45.0%
ACATTGTCCCAAGAACCACT+TGG - chr2_1:73659379-73659398 None:intergenic 45.0%
GTGGTTCTTGGGACAATGTA+TGG + chr2_1:73659380-73659399 Msa0223920:CDS 45.0%
GGTTCTTGGGACAATGTATG+GGG + chr2_1:73659382-73659401 Msa0223920:CDS 45.0%
AACGACGCCAGTCAATGATT+TGG + chr2_1:73659421-73659440 Msa0223920:exon 45.0%
!! TATTAAATATTAAAAAGAAA+GGG - chr2_1:73658229-73658248 None:intergenic 5.0%
!! TTATTAAATATTAAAAAGAA+AGG - chr2_1:73658230-73658249 None:intergenic 5.0%
TCCAACCCTCAACAACCATC+AGG + chr2_1:73655215-73655234 Msa0223920:five_prime_UTR 50.0%
ACCTGCCTGATGGTTGTTGA+GGG - chr2_1:73655223-73655242 None:intergenic 50.0%
AACCTGCCTGATGGTTGTTG+AGG - chr2_1:73655224-73655243 None:intergenic 50.0%
AAGAGAAGGAACCTGCCTGA+TGG - chr2_1:73655233-73655252 None:intergenic 50.0%
TCACACATTGAGGGCCTGTT+TGG - chr2_1:73655830-73655849 None:intergenic 50.0%
GAACGAGCAGGTTCTTCATC+TGG + chr2_1:73655972-73655991 Msa0223920:five_prime_UTR 50.0%
AGCAGGTTCTTCATCTGGTC+CGG + chr2_1:73655977-73655996 Msa0223920:five_prime_UTR 50.0%
AAGCACCAGTGACGTTGTTG+AGG + chr2_1:73656025-73656044 Msa0223920:five_prime_UTR 50.0%
TGAAGCCTCAACAACGTCAC+TGG - chr2_1:73656033-73656052 None:intergenic 50.0%
AGTGACGTTGTTGAGGCTTC+AGG + chr2_1:73656032-73656051 Msa0223920:five_prime_UTR 50.0%
GTGACGTTGTTGAGGCTTCA+GGG + chr2_1:73656033-73656052 Msa0223920:five_prime_UTR 50.0%
CTTCAGGGACTGCAAAACCT+GGG + chr2_1:73656048-73656067 Msa0223920:five_prime_UTR 50.0%
TTCAGGGACTGCAAAACCTG+GGG + chr2_1:73656049-73656068 Msa0223920:five_prime_UTR 50.0%
GACAGCTGCACTTCTATCAG+CGG - chr2_1:73656087-73656106 None:intergenic 50.0%
! GTTCCATAGTTCTGCTCCCA+TGG - chr2_1:73656146-73656165 None:intergenic 50.0%
GGAACTAACAGCTATGGAGG+CGG + chr2_1:73656161-73656180 Msa0223920:five_prime_UTR 50.0%
CTAGGAGGAGGAATGTATGG+CGG + chr2_1:73656370-73656389 Msa0223920:CDS 50.0%
TACAGCAGAGGAGGATATGG+AGG + chr2_1:73656418-73656437 Msa0223920:CDS 50.0%
ACATCCCAGATGACCCGTAA+AGG - chr2_1:73656447-73656466 None:intergenic 50.0%
! TACGGGTCATCTGGGATGTA+TGG + chr2_1:73656448-73656467 Msa0223920:CDS 50.0%
! TCATCTGGGATGTATGGAGG+AGG + chr2_1:73656454-73656473 Msa0223920:CDS 50.0%
! ATGGGAGTTGGTCCTTATGG+TGG + chr2_1:73656532-73656551 Msa0223920:CDS 50.0%
GGATCTTGCTCACCACCATA+AGG - chr2_1:73656547-73656566 None:intergenic 50.0%
! GGGGCGCCATATGGATTATT+GGG - chr2_1:73656568-73656587 None:intergenic 50.0%
!! AGGGGCGCCATATGGATTAT+TGG - chr2_1:73656569-73656588 None:intergenic 50.0%
TTGGATTTCTGTGATGCGCG+TGG + chr2_1:73656606-73656625 Msa0223920:CDS 50.0%
TCTTGCCTCACATTGCTCAC+AGG - chr2_1:73656893-73656912 None:intergenic 50.0%
!! AGAGAAGCAATGGTGGACCA+CGG - chr2_1:73657058-73657077 None:intergenic 50.0%
ACTCATTGACCAGAACACCC+AGG + chr2_1:73657230-73657249 Msa0223920:CDS 50.0%
AATGGAATGCCTGGGTGTTC+TGG - chr2_1:73657242-73657261 None:intergenic 50.0%
GCATGGCGGTCATGAACAAA+TGG - chr2_1:73657260-73657279 None:intergenic 50.0%
TGAAGGCCAAACCTGAAGCA+TGG - chr2_1:73657277-73657296 None:intergenic 50.0%
GAGCTAGAACGCATCAGAGT+TGG - chr2_1:73657517-73657536 None:intergenic 50.0%
TGTTGAATCCCACGAGCTAG+GGG + chr2_1:73657539-73657558 Msa0223920:intron 50.0%
!! GAATTGGTTCGCGGTTCTCA+TGG - chr2_1:73657915-73657934 None:intergenic 50.0%
AAAAGATGAACCAGTGGCGG+TGG + chr2_1:73657975-73657994 Msa0223920:intron 50.0%
CAATGTTAGGTCACGTGGAC+TGG - chr2_1:73658170-73658189 None:intergenic 50.0%
CAGTCCACGTGACCTAACAT+TGG + chr2_1:73658168-73658187 Msa0223920:intron 50.0%
ATACACAGAGTCGGTACGCT+CGG - chr2_1:73658370-73658389 None:intergenic 50.0%
CGTTAGGGGATACACAGAGT+CGG - chr2_1:73658379-73658398 None:intergenic 50.0%
CTGTGTATCCCCTAACGTAC+CGG + chr2_1:73658382-73658401 Msa0223920:intron 50.0%
ATCGCTCCGGCATGTTGTAT+GGG + chr2_1:73659185-73659204 Msa0223920:CDS 50.0%
TAGCTCCCCATACAACATGC+CGG - chr2_1:73659194-73659213 None:intergenic 50.0%
GATTTGTGTTGCGGTTGCTC+GGG + chr2_1:73659218-73659237 Msa0223920:CDS 50.0%
CCCAATAAGGTTAACCCACC+AGG + chr2_1:73659253-73659272 Msa0223920:CDS 50.0%
GTTAACCCACCAGGTCCAAA+TGG + chr2_1:73659262-73659281 Msa0223920:CDS 50.0%
GGATATCCATTTGGACCTGG+TGG - chr2_1:73659271-73659290 None:intergenic 50.0%
GCCTGATGGTTGTTGAGGGT+TGG - chr2_1:73655219-73655238 None:intergenic 55.0%
ACCCTCAACAACCATCAGGC+AGG + chr2_1:73655219-73655238 Msa0223920:five_prime_UTR 55.0%
!! CGTTCCCAAGGTTTTGGTGG+AGG - chr2_1:73655957-73655976 None:intergenic 55.0%
!! GCTCGTTCCCAAGGTTTTGG+TGG - chr2_1:73655960-73655979 None:intergenic 55.0%
! CCTGCTCGTTCCCAAGGTTT+TGG - chr2_1:73655963-73655982 None:intergenic 55.0%
CCAAAACCTTGGGAACGAGC+AGG + chr2_1:73655960-73655979 Msa0223920:five_prime_UTR 55.0%
GAAGAACCTGCTCGTTCCCA+AGG - chr2_1:73655969-73655988 None:intergenic 55.0%
! GATGGCGGTCTAAAAGGTGC+CGG - chr2_1:73655999-73656018 None:intergenic 55.0%
! GCACCTTTTAGACCGCCATC+AGG + chr2_1:73655999-73656018 Msa0223920:five_prime_UTR 55.0%
!! CCACCTGATGGCGGTCTAAA+AGG - chr2_1:73656005-73656024 None:intergenic 55.0%
! CCTTTTAGACCGCCATCAGG+TGG + chr2_1:73656002-73656021 Msa0223920:five_prime_UTR 55.0%
TCACTGGTGCTTCCACCTGA+TGG - chr2_1:73656017-73656036 None:intergenic 55.0%
GCTTCAGGGACTGCAAAACC+TGG + chr2_1:73656047-73656066 Msa0223920:five_prime_UTR 55.0%
GCGGTGGTAACAATTTCCCC+AGG - chr2_1:73656068-73656087 None:intergenic 55.0%
AGCTGCACTTCTATCAGCGG+TGG - chr2_1:73656084-73656103 None:intergenic 55.0%
AGGCCATGGGAGCAGAACTA+TGG + chr2_1:73656140-73656159 Msa0223920:five_prime_UTR 55.0%
! AGCTATGGAGGCGGAGCATT+AGG + chr2_1:73656170-73656189 Msa0223920:five_prime_UTR 55.0%
! TATGGAGGCGGAGCATTAGG+TGG + chr2_1:73656173-73656192 Msa0223920:five_prime_UTR 55.0%
!! TCTTCTTATGGTGGCGGGCT+AGG + chr2_1:73656352-73656371 Msa0223920:CDS 55.0%
GGGCTAGGAGGAGGAATGTA+TGG + chr2_1:73656367-73656386 Msa0223920:CDS 55.0%
AGCAGAGGAGGATATGGAGG+CGG + chr2_1:73656421-73656440 Msa0223920:CDS 55.0%
GGATATGGAGGCGGCCTTTA+CGG + chr2_1:73656430-73656449 Msa0223920:CDS 55.0%
GATATGGAGGCGGCCTTTAC+GGG + chr2_1:73656431-73656450 Msa0223920:CDS 55.0%
! GGGTCATCTGGGATGTATGG+AGG + chr2_1:73656451-73656470 Msa0223920:CDS 55.0%
! TCTGGGATGTATGGAGGAGG+TGG + chr2_1:73656457-73656476 Msa0223920:CDS 55.0%
GTCCAATGGGTGGAATGGGT+GGG + chr2_1:73656503-73656522 Msa0223920:CDS 55.0%
TACCCACCCATTCCACCCAT+TGG - chr2_1:73656508-73656527 None:intergenic 55.0%
ATGGGTGGAATGGGTGGGTA+TGG + chr2_1:73656508-73656527 Msa0223920:CDS 55.0%
TGGAATGGGTGGGTATGGCA+TGG + chr2_1:73656513-73656532 Msa0223920:CDS 55.0%
GGAATGGGTGGGTATGGCAT+GGG + chr2_1:73656514-73656533 Msa0223920:CDS 55.0%
! GGCATGGGAGTTGGTCCTTA+TGG + chr2_1:73656529-73656548 Msa0223920:CDS 55.0%
AAAATCCTGGCGGGGATGGA+GGG - chr2_1:73656588-73656607 None:intergenic 55.0%
ATCCAAAATCCTGGCGGGGA+TGG - chr2_1:73656592-73656611 None:intergenic 55.0%
GTTCATGACCGCCATGCTTC+AGG + chr2_1:73657263-73657282 Msa0223920:CDS 55.0%
! TGACCGCCATGCTTCAGGTT+TGG + chr2_1:73657268-73657287 Msa0223920:intron 55.0%
AGGCCAAACCTGAAGCATGG+CGG - chr2_1:73657274-73657293 None:intergenic 55.0%
ACTTGGTTCCCCTAGCTCGT+GGG - chr2_1:73657550-73657569 None:intergenic 55.0%
!! GAGTGAAGGTTGGTGGGACT+TGG - chr2_1:73657567-73657586 None:intergenic 55.0%
!! GGTACGGACGAATTGGTTCG+CGG - chr2_1:73657924-73657943 None:intergenic 55.0%
GCGAACCAATTCGTCCGTAC+CGG + chr2_1:73657923-73657942 Msa0223920:intron 55.0%
ACGAACCGGTACGGACGAAT+TGG - chr2_1:73657931-73657950 None:intergenic 55.0%
TGAAGCTTTACCACCGCCAC+TGG - chr2_1:73657988-73658007 None:intergenic 55.0%
!! AGGTCACGTGGACTGGACAT+TGG - chr2_1:73658163-73658182 None:intergenic 55.0%
TACACAGAGTCGGTACGCTC+GGG - chr2_1:73658369-73658388 None:intergenic 55.0%
! ATGGAACGGGTTCCCAGTGT+TGG - chr2_1:73659092-73659111 None:intergenic 55.0%
CTGCAGCTGTTTGATCGCTC+CGG + chr2_1:73659172-73659191 Msa0223920:intron 55.0%
GATCGCTCCGGCATGTTGTA+TGG + chr2_1:73659184-73659203 Msa0223920:CDS 55.0%
TCGCTCCGGCATGTTGTATG+GGG + chr2_1:73659186-73659205 Msa0223920:CDS 55.0%
GAACCACTTGGAGCAGCCTT+TGG - chr2_1:73659367-73659386 None:intergenic 55.0%
AGGCTGCTCCAAGTGGTTCT+TGG + chr2_1:73659368-73659387 Msa0223920:CDS 55.0%
GGCTGCTCCAAGTGGTTCTT+GGG + chr2_1:73659369-73659388 Msa0223920:CDS 55.0%
ATGTATGGGGAAACGACGCC+AGG + chr2_1:73659395-73659414 Msa0223920:CDS 55.0%
TGTATGGGGAAACGACGCCA+GGG + chr2_1:73659396-73659415 Msa0223920:CDS 55.0%
CTGGTGCTTCCACCTGATGG+CGG - chr2_1:73656014-73656033 None:intergenic 60.0%
! TTCTGCTCCCATGGCCTTGC+GGG - chr2_1:73656137-73656156 None:intergenic 60.0%
! GTTCTGCTCCCATGGCCTTG+CGG - chr2_1:73656138-73656157 None:intergenic 60.0%
!! TCTTATGGTGGCGGGCTAGG+AGG + chr2_1:73656355-73656374 Msa0223920:CDS 60.0%
GGAGGAGGAATGTATGGCGG+CGG + chr2_1:73656373-73656392 Msa0223920:CDS 60.0%
GAGGAATGTATGGCGGCGGT+GGG + chr2_1:73656377-73656396 Msa0223920:CDS 60.0%
TATGGCGGCGGTGGGATGTA+TGG + chr2_1:73656385-73656404 Msa0223920:CDS 60.0%
GCGGCCTTTACGGGTCATCT+GGG + chr2_1:73656440-73656459 Msa0223920:CDS 60.0%
! TAGTGGCCTTGGGGGTCCAA+TGG + chr2_1:73656489-73656508 Msa0223920:CDS 60.0%
! AGTGGCCTTGGGGGTCCAAT+GGG + chr2_1:73656490-73656509 Msa0223920:CDS 60.0%
TTCCACCCATTGGACCCCCA+AGG - chr2_1:73656498-73656517 None:intergenic 60.0%
TGGGGGTCCAATGGGTGGAA+TGG + chr2_1:73656498-73656517 Msa0223920:CDS 60.0%
GGGGGTCCAATGGGTGGAAT+GGG + chr2_1:73656499-73656518 Msa0223920:CDS 60.0%
GGTCCAATGGGTGGAATGGG+TGG + chr2_1:73656502-73656521 Msa0223920:CDS 60.0%
GGTGGGTATGGCATGGGAGT+TGG + chr2_1:73656520-73656539 Msa0223920:CDS 60.0%
AAATCCTGGCGGGGATGGAG+GGG - chr2_1:73656587-73656606 None:intergenic 60.0%
CAAAATCCTGGCGGGGATGG+AGG - chr2_1:73656589-73656608 None:intergenic 60.0%
! CTCCATCCCCGCCAGGATTT+TGG + chr2_1:73656587-73656606 Msa0223920:CDS 60.0%
! GACTTGGTTCCCCTAGCTCG+TGG - chr2_1:73657551-73657570 None:intergenic 60.0%
TGGTTCGCGGTTCTCATGGG+TGG - chr2_1:73657911-73657930 None:intergenic 60.0%
TTCGCGATTCGCTCGGTACG+CGG - chr2_1:73658447-73658466 None:intergenic 60.0%
TACCGAGCGAATCGCGAACC+TGG + chr2_1:73658449-73658468 Msa0223920:intron 60.0%
CACCAGGTTCGCGATTCGCT+CGG - chr2_1:73658454-73658473 None:intergenic 60.0%
GCACCAAAGGCTGCTCCAAG+TGG + chr2_1:73659361-73659380 Msa0223920:CDS 60.0%
GTATGGGGAAACGACGCCAG+GGG + chr2_1:73659397-73659416 Msa0223920:CDS 60.0%
TTGACTGGCGTCGTTTCCCC+TGG - chr2_1:73659416-73659435 None:intergenic 60.0%
TTGCCAGGCCTGTTCCCGCA+AGG + chr2_1:73656120-73656139 Msa0223920:five_prime_UTR 65.0%
GCCTGTTCCCGCAAGGCCAT+GGG + chr2_1:73656127-73656146 Msa0223920:five_prime_UTR 65.0%
! TCCCATGGCCTTGCGGGAAC+AGG - chr2_1:73656131-73656150 None:intergenic 65.0%
!! TATGGTGGCGGGCTAGGAGG+AGG + chr2_1:73656358-73656377 Msa0223920:CDS 65.0%
GGAGGAATGTATGGCGGCGG+TGG + chr2_1:73656376-73656395 Msa0223920:CDS 65.0%
GGCGGCCTTTACGGGTCATC+TGG + chr2_1:73656439-73656458 Msa0223920:CDS 65.0%
CGGTACGAACACGCGGTACG+CGG - chr2_1:73658427-73658446 None:intergenic 65.0%
CGGTACGCGGTACGAACACG+CGG - chr2_1:73658434-73658453 None:intergenic 65.0%
! TGGCCTTGCGGGAACAGGCC+TGG - chr2_1:73656126-73656145 None:intergenic 70.0%
GGCCTGTTCCCGCAAGGCCA+TGG + chr2_1:73656126-73656145 Msa0223920:five_prime_UTR 70.0%
GGCCTTGGGGGTCCAATGGG+TGG + chr2_1:73656493-73656512 Msa0223920:CDS 70.0%
!! GGGGATGGAGGGGCGCCATA+TGG - chr2_1:73656577-73656596 None:intergenic 70.0%
! GGCGCCCCTCCATCCCCGCC+AGG + chr2_1:73656580-73656599 Msa0223920:CDS 85.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 73654963 73659862 73654963 ID=Msa0223920;Name=Msa0223920
chr2_1 mRNA 73654963 73659862 73654963 ID=Msa0223920-mRNA-1;Parent=Msa0223920;Name=Msa0223920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=538|1|1|1|0.5|0.8|5|424|222
chr2_1 exon 73654963 73655240 73654963 ID=Msa0223920-mRNA-1:exon:21634;Parent=Msa0223920-mRNA-1
chr2_1 exon 73655949 73656194 73655949 ID=Msa0223920-mRNA-1:exon:21635;Parent=Msa0223920-mRNA-1
chr2_1 exon 73656299 73656627 73656299 ID=Msa0223920-mRNA-1:exon:21636;Parent=Msa0223920-mRNA-1
chr2_1 exon 73657192 73657284 73657192 ID=Msa0223920-mRNA-1:exon:21637;Parent=Msa0223920-mRNA-1
chr2_1 exon 73659178 73659862 73659178 ID=Msa0223920-mRNA-1:exon:21638;Parent=Msa0223920-mRNA-1
chr2_1 five_prime_UTR 73654963 73655240 73654963 ID=Msa0223920-mRNA-1:five_prime_utr;Parent=Msa0223920-mRNA-1
chr2_1 five_prime_UTR 73655949 73656194 73655949 ID=Msa0223920-mRNA-1:five_prime_utr;Parent=Msa0223920-mRNA-1
chr2_1 five_prime_UTR 73656299 73656312 73656299 ID=Msa0223920-mRNA-1:five_prime_utr;Parent=Msa0223920-mRNA-1
chr2_1 CDS 73656313 73656627 73656313 ID=Msa0223920-mRNA-1:cds;Parent=Msa0223920-mRNA-1
chr2_1 CDS 73657192 73657284 73657192 ID=Msa0223920-mRNA-1:cds;Parent=Msa0223920-mRNA-1
chr2_1 CDS 73659178 73659438 73659178 ID=Msa0223920-mRNA-1:cds;Parent=Msa0223920-mRNA-1
chr2_1 three_prime_UTR 73659439 73659862 73659439 ID=Msa0223920-mRNA-1:three_prime_utr;Parent=Msa0223920-mRNA-1
Gene Sequence

>Msa0223920

ATGAATTATAATTCTGGATATGGATCTGGGATGTATGGATCTTCTTATGGTGGCGGGCTAGGAGGAGGAATGTATGGCGGCGGTGGGATGTATGGTAACAGTATGTACAGCAGAGGAGGATATGGAGGCGGCCTTTACGGGTCATCTGGGATGTATGGAGGAGGTGGAATGTATAATAGTGGCCTTGGGGGTCCAATGGGTGGAATGGGTGGGTATGGCATGGGAGTTGGTCCTTATGGTGGTGAGCAAGATCCCAATAATCCATATGGCGCCCCTCCATCCCCGCCAGGATTTTGGATTTCTGTGATGCGCGTGATGCAAGGTGTGGTTAATTTTTTCGGTCGGATATCAATACTCATTGACCAGAACACCCAGGCATTCCATTTGTTCATGACCGCCATGCTTCAGCTGTTTGATCGCTCCGGCATGTTGTATGGGGAGCTAGCTAGATTTGTGTTGCGGTTGCTCGGGATCAAAACTAAGCCCAATAAGGTTAACCCACCAGGTCCAAATGGATATCCACATCAAGGTCCGAATGGATATCCACATCAAGGACAACACAATTCTTCTGGAAATATGAACTACATTGAGGCACCAAAGGCTGCTCCAAGTGGTTCTTGGGACAATGTATGGGGAAACGACGCCAGGGGAAACGACGCCAGTCAATGA
Protein sequence

>Msa0223920

MNYNSGYGSGMYGSSYGGGLGGGMYGGGGMYGNSMYSRGGYGGGLYGSSGMYGGGGMYNSGLGGPMGGMGGYGMGVGPYGGEQDPNNPYGAPPSPPGFWISVMRVMQGVVNFFGRISILIDQNTQAFHLFMTAMLQLFDRSGMLYGELARFVLRLLGIKTKPNKVNPPGPNGYPHQGPNGYPHQGQHNSSGNMNYIEAPKAAPSGSWDNVWGNDARGNDASQ*