Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173330 | XP_003591234.1 | 94.760 | 229 | 0 | 1 | 3 | 219 | 105 | 333 | 1.03e-149 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173330 | sp|Q9LZ98|AB20I_ARATH | 79.476 | 229 | 29 | 4 | 3 | 218 | 105 | 328 | 1.26e-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173330 | G7IAA4 | 94.760 | 229 | 0 | 1 | 3 | 219 | 105 | 333 | 4.90e-150 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0173330 | -0.820207 | 7.747542e-53 | -8.615850e-47 |
| Msa0072170 | Msa0173330 | 0.833491 | 5.173772e-56 | -8.615850e-47 |
| Msa0085720 | Msa0173330 | 0.806027 | 1.004205e-49 | -8.615850e-47 |
| Msa0090030 | Msa0173330 | 0.840711 | 7.374863e-58 | -8.615850e-47 |
| Msa0094010 | Msa0173330 | 0.817799 | 2.733783e-52 | -8.615850e-47 |
| Msa0112300 | Msa0173330 | -0.810013 | 1.423302e-50 | -8.615850e-47 |
| Msa0116430 | Msa0173330 | 0.862962 | 3.493966e-64 | -8.615850e-47 |
| Msa0120370 | Msa0173330 | -0.804202 | 2.418982e-49 | -8.615850e-47 |
| Msa0120540 | Msa0173330 | 0.843170 | 1.652244e-58 | -8.615850e-47 |
| Msa0131450 | Msa0173330 | 0.806931 | 6.471487e-50 | -8.615850e-47 |
| Msa0140170 | Msa0173330 | 0.821347 | 4.237451e-53 | -8.615850e-47 |
| Msa0140400 | Msa0173330 | 0.807308 | 5.385999e-50 | -8.615850e-47 |
| Msa0149810 | Msa0173330 | 0.800153 | 1.647244e-48 | -8.615850e-47 |
| Msa0173330 | Msa0175290 | -0.813395 | 2.616085e-51 | -8.615850e-47 |
| Msa0173330 | Msa0194720 | 0.816808 | 4.568922e-52 | -8.615850e-47 |
| Msa0173330 | Msa0198940 | 0.802949 | 4.400927e-49 | -8.615850e-47 |
| Msa0173330 | Msa0208810 | 0.841971 | 3.438067e-58 | -8.615850e-47 |
| Msa0173330 | Msa0212750 | -0.813946 | 1.977999e-51 | -8.615850e-47 |
| Msa0173330 | Msa0223290 | 0.807789 | 4.257552e-50 | -8.615850e-47 |
| Msa0173330 | Msa0227310 | -0.814781 | 1.293825e-51 | -8.615850e-47 |
| Msa0173330 | Msa0241740 | 0.806692 | 7.270700e-50 | -8.615850e-47 |
| Msa0173330 | Msa0252240 | 0.811455 | 6.941511e-51 | -8.615850e-47 |
| Msa0173330 | Msa0265160 | 0.805638 | 1.212051e-49 | -8.615850e-47 |
| Msa0173330 | Msa0266210 | 0.838586 | 2.632945e-57 | -8.615850e-47 |
| Msa0173330 | Msa0287670 | 0.843386 | 1.446317e-58 | -8.615850e-47 |
| Msa0173330 | Msa0288730 | 0.800023 | 1.750378e-48 | -8.615850e-47 |
| Msa0173330 | Msa0295000 | -0.834209 | 3.421841e-56 | -8.615850e-47 |
| Msa0173330 | Msa0302650 | 0.818249 | 2.163652e-52 | -8.615850e-47 |
| Msa0173330 | Msa0312310 | 0.806933 | 6.467519e-50 | -8.615850e-47 |
| Msa0173330 | Msa0362060 | 0.841267 | 5.271639e-58 | -8.615850e-47 |
| Msa0173330 | Msa0363100 | 0.818218 | 2.198004e-52 | -8.615850e-47 |
| Msa0173330 | Msa0363170 | 0.850197 | 1.984639e-60 | -8.615850e-47 |
| Msa0173330 | Msa0370310 | 0.808252 | 3.393073e-50 | -8.615850e-47 |
| Msa0173330 | Msa0377530 | 0.813043 | 3.124556e-51 | -8.615850e-47 |
| Msa0173330 | Msa0404700 | 0.848827 | 4.782831e-60 | -8.615850e-47 |
| Msa0173330 | Msa0416320 | 0.819193 | 1.320417e-52 | -8.615850e-47 |
| Msa0173330 | Msa0426810 | 0.836185 | 1.085323e-56 | -8.615850e-47 |
| Msa0173330 | Msa0462540 | 0.834967 | 2.206730e-56 | -8.615850e-47 |
| Msa0173330 | Msa0465920 | 0.814436 | 1.541825e-51 | -8.615850e-47 |
| Msa0173330 | Msa0471790 | 0.815073 | 1.114112e-51 | -8.615850e-47 |
| Msa0173330 | Msa0505060 | 0.814899 | 1.217635e-51 | -8.615850e-47 |
| Msa0173330 | Msa0519390 | 0.816745 | 4.719967e-52 | -8.615850e-47 |
| Msa0173330 | Msa0609970 | 0.828468 | 8.841170e-55 | -8.615850e-47 |
| Msa0173330 | Msa0614990 | 0.832116 | 1.135433e-55 | -8.615850e-47 |
| Msa0173330 | Msa0650620 | 0.846192 | 2.533865e-59 | -8.615850e-47 |
| Msa0173330 | Msa0693790 | 0.813036 | 3.136500e-51 | -8.615850e-47 |
| Msa0173330 | Msa0720370 | 0.805246 | 1.464298e-49 | -8.615850e-47 |
| Msa0173330 | Msa0799060 | 0.808666 | 2.769279e-50 | -8.615850e-47 |
| Msa0173330 | Msa0876860 | -0.816212 | 6.211849e-52 | -8.615850e-47 |
| Msa0173330 | Msa0924150 | -0.827505 | 1.507976e-54 | -8.615850e-47 |
| Msa0173330 | Msa0944730 | 0.817575 | 3.071363e-52 | -8.615850e-47 |
| Msa0173330 | Msa0982590 | 0.808939 | 2.420608e-50 | -8.615850e-47 |
| Msa0173330 | Msa1045450 | 0.807177 | 5.742579e-50 | -8.615850e-47 |
| Msa0173330 | Msa1172130 | -0.860774 | 1.633248e-63 | -8.615850e-47 |
| Msa0173330 | Msa1182640 | 0.881805 | 1.768685e-70 | -8.615850e-47 |
| Msa0173330 | Msa1183770 | 0.802152 | 6.425732e-49 | -8.615850e-47 |
| Msa0173330 | Msa1229850 | 0.853145 | 2.900298e-61 | -8.615850e-47 |
| Msa0173330 | Msa1236070 | -0.806575 | 7.696693e-50 | -8.615850e-47 |
| Msa0173330 | Msa1272520 | 0.849431 | 3.247383e-60 | -8.615850e-47 |
| Msa0173330 | Msa1298550 | -0.827289 | 1.698363e-54 | -8.615850e-47 |
| Msa0173330 | Msa1310660 | 0.879717 | 9.923071e-70 | -8.615850e-47 |
| Msa0173330 | Msa1330890 | -0.862189 | 6.044689e-64 | -8.615850e-47 |
| Msa0173330 | Msa1350690 | 0.840404 | 8.877639e-58 | -8.615850e-47 |
| Msa0173330 | Msa1360280 | 0.816286 | 5.979928e-52 | -8.615850e-47 |
| Msa0173330 | Msa1363700 | 0.843114 | 1.709392e-58 | -8.615850e-47 |
| Msa0173330 | Msa1365860 | 0.800299 | 1.538268e-48 | -8.615850e-47 |
| Msa0173330 | Msa1371090 | 0.823619 | 1.256351e-53 | -8.615850e-47 |
| Msa0173330 | Msa1383480 | 0.817574 | 3.073371e-52 | -8.615850e-47 |
| Msa0173330 | Msa1404720 | 0.824431 | 8.100095e-54 | -8.615850e-47 |
| Msa0173330 | Msa1415920 | 0.851192 | 1.041226e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173330 | MtrunA17_Chr1g0193051 | 94.760 | 229 | 0 | 1 | 3 | 219 | 105 | 333 | 9.45e-154 | 429 |
| Msa0173330 | MtrunA17_Chr1g0183671 | 52.096 | 167 | 66 | 3 | 3 | 156 | 105 | 270 | 1.29e-54 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173330 | AT5G02270.1 | 79.476 | 229 | 29 | 4 | 3 | 218 | 105 | 328 | 1.28e-111 | 323 |
| Msa0173330 | AT5G02270.2 | 71.373 | 255 | 29 | 5 | 3 | 218 | 105 | 354 | 8.82e-106 | 309 |
| Msa0173330 | AT1G03905.3 | 56.790 | 162 | 52 | 4 | 3 | 149 | 34 | 192 | 3.71e-55 | 176 |
| Msa0173330 | AT1G03905.2 | 56.790 | 162 | 52 | 4 | 3 | 149 | 34 | 192 | 3.71e-55 | 176 |
| Msa0173330 | AT1G03905.4 | 56.790 | 162 | 52 | 4 | 3 | 149 | 34 | 192 | 3.71e-55 | 176 |
| Msa0173330 | AT1G03905.1 | 56.790 | 162 | 52 | 4 | 3 | 149 | 98 | 256 | 1.23e-54 | 176 |
| Msa0173330 | AT5G44110.1 | 54.088 | 159 | 59 | 3 | 3 | 148 | 97 | 254 | 1.99e-54 | 176 |
| Msa0173330 | AT5G44110.4 | 54.464 | 112 | 38 | 2 | 3 | 102 | 34 | 144 | 1.56e-34 | 120 |
| Msa0173330 | AT5G44110.2 | 54.464 | 112 | 38 | 2 | 3 | 102 | 97 | 207 | 4.74e-34 | 121 |
| Msa0173330 | AT5G44110.3 | 65.574 | 61 | 20 | 1 | 3 | 63 | 97 | 156 | 6.02e-20 | 84.7 |
Find 56 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTTTGACTTTCTCTA+TGG | 0.218624 | 1_4:-58570819 | None:intergenic |
| CCTTTCCTAGGTTCTTCTTC+TGG | 0.235704 | 1_4:+58570516 | Msa0173330:intron |
| TCTGCCGAGAAAATGATATT+TGG | 0.245834 | 1_4:+58569505 | Msa0173330:CDS |
| ATTAGCTCTGCTCTTCTTGC+AGG | 0.255307 | 1_4:-58569544 | None:intergenic |
| TCAACTTGCTTATCAAATTC+AGG | 0.268450 | 1_4:-58571155 | None:intergenic |
| AATATACATACAATATTTGT+TGG | 0.342577 | 1_4:-58570667 | None:intergenic |
| GAATTTGATAAGCAAGTTGA+TGG | 0.381823 | 1_4:+58571158 | Msa0173330:CDS |
| AAGAAGAGCAGAGCTAATTA+AGG | 0.392285 | 1_4:+58569549 | Msa0173330:CDS |
| TGCAGAGAACAGTAGAAGTT+TGG | 0.392482 | 1_4:+58571072 | Msa0173330:intron |
| TATTAGACATCAATCTTTCA+TGG | 0.406448 | 1_4:+58570311 | Msa0173330:CDS |
| ATAGAAGACAAAGGAAAGAA+AGG | 0.411481 | 1_4:+58571117 | Msa0173330:CDS |
| TCAAAACTCGGTTTGAGCTT+AGG | 0.411975 | 1_4:-58571289 | None:intergenic |
| CACTCTTCTTCTTTGACCAT+CGG | 0.430083 | 1_4:-58570350 | None:intergenic |
| CCTTCTGAAGTTTCTAAGAA+AGG | 0.430504 | 1_4:+58570579 | Msa0173330:CDS |
| CGGTTACATTCCACCATTGC+CGG | 0.435159 | 1_4:+58571251 | Msa0173330:CDS |
| CCGGTTCGAGTTACTAATAA+TGG | 0.435246 | 1_4:+58571215 | Msa0173330:CDS |
| GCAGAAATGTCCATCTGTAT+TGG | 0.437756 | 1_4:-58569487 | None:intergenic |
| TATGCAACACATATATTTGA+CGG | 0.455846 | 1_4:+58570631 | Msa0173330:CDS |
| AACTAGCAAACTGTCACTAA+TGG | 0.457560 | 1_4:+58570838 | Msa0173330:CDS |
| ACTAATAATGGCTGGGCCGC+AGG | 0.461635 | 1_4:+58571227 | Msa0173330:CDS |
| GTTTCTTTGACTTTCTCTAT+GGG | 0.462744 | 1_4:-58570818 | None:intergenic |
| TTCGAGTTACTAATAATGGC+TGG | 0.463711 | 1_4:+58571219 | Msa0173330:CDS |
| AAAATGATATTTGGTGTGGC+TGG | 0.465667 | 1_4:+58569514 | Msa0173330:CDS |
| AGGGGATCCTGCACGAGCTC+CGG | 0.470810 | 1_4:+58571196 | Msa0173330:CDS |
| TATTTGACGGTCTTGAGGAT+TGG | 0.475920 | 1_4:+58570644 | Msa0173330:CDS |
| GTTGATGGAAGCCGTGTAGT+TGG | 0.483883 | 1_4:+58571173 | Msa0173330:CDS |
| ATGTGTTGCATATATAATAG+TGG | 0.491771 | 1_4:-58570620 | None:intergenic |
| CCATTATTAGTAACTCGAAC+CGG | 0.503384 | 1_4:-58571215 | None:intergenic |
| TATCAGGTTTATGTTGCTCA+TGG | 0.505115 | 1_4:+58570776 | Msa0173330:intron |
| AGGTTTATGTTGCTCATGGA+AGG | 0.510815 | 1_4:+58570780 | Msa0173330:intron |
| TTATGTTGCTCATGGAAGGC+TGG | 0.512155 | 1_4:+58570784 | Msa0173330:CDS |
| ACTCGAACCGGAGCTCGTGC+AGG | 0.533231 | 1_4:-58571203 | None:intergenic |
| AAGAAAGGAATGTGATGAGA+GGG | 0.539356 | 1_4:+58570594 | Msa0173330:CDS |
| AGGAAAGAAAGGAAGGCTGC+TGG | 0.552158 | 1_4:+58571128 | Msa0173330:CDS |
| AAATGATATTTGGTGTGGCT+GGG | 0.553247 | 1_4:+58569515 | Msa0173330:CDS |
| ACATATATTTGACGGTCTTG+AGG | 0.557218 | 1_4:+58570639 | Msa0173330:CDS |
| GATGGAAGCCGTGTAGTTGG+AGG | 0.557443 | 1_4:+58571176 | Msa0173330:CDS |
| CTTTGAAGTTCCAATACAGA+TGG | 0.561595 | 1_4:+58569477 | Msa0173330:CDS |
| AAGACAAAGGAAAGAAAGGA+AGG | 0.565520 | 1_4:+58571121 | Msa0173330:CDS |
| GAACAGTAGAAGTTTGGCTA+CGG | 0.570397 | 1_4:+58571078 | Msa0173330:CDS |
| ATGGAAGCCGTGTAGTTGGA+GGG | 0.572562 | 1_4:+58571177 | Msa0173330:CDS |
| AAACTCGGTTTGAGCTTAGG+AGG | 0.579078 | 1_4:-58571286 | None:intergenic |
| TCGAGTTACTAATAATGGCT+GGG | 0.593054 | 1_4:+58571220 | Msa0173330:CDS |
| CAGCTCTTGCTAGAACATCA+AGG | 0.597648 | 1_4:-58570555 | None:intergenic |
| CCTTTCTTAGAAACTTCAGA+AGG | 0.599066 | 1_4:-58570579 | None:intergenic |
| TAAGAAAGGAATGTGATGAG+AGG | 0.615451 | 1_4:+58570593 | Msa0173330:CDS |
| AGTAGAAGTTTGGCTACGGA+AGG | 0.617342 | 1_4:+58571082 | Msa0173330:CDS |
| ATAATGGCTGGGCCGCAGGT+CGG | 0.623795 | 1_4:+58571231 | Msa0173330:CDS |
| CTTGCTTATCAAATTCAGGA+AGG | 0.634035 | 1_4:-58571151 | None:intergenic |
| CAGGATCCCCTCCAACTACA+CGG | 0.662648 | 1_4:-58571184 | None:intergenic |
| TGGAAGCCGTGTAGTTGGAG+GGG | 0.669936 | 1_4:+58571178 | Msa0173330:CDS |
| GGTGGAATGTAACCGACCTG+CGG | 0.673773 | 1_4:-58571243 | None:intergenic |
| AGATTGCATAAAGTATCCGA+TGG | 0.675760 | 1_4:+58570334 | Msa0173330:CDS |
| CGAGAAAATGATATTTGGTG+TGG | 0.678669 | 1_4:+58569510 | Msa0173330:CDS |
| AGAAAGGAATGTGATGAGAG+GGG | 0.702733 | 1_4:+58570595 | Msa0173330:CDS |
| GAGATGAAGATAGAAGACAA+AGG | 0.719714 | 1_4:+58571108 | Msa0173330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATAAAGAAAATCTT+TGG | + | chr1_4:58570033-58570052 | Msa0173330:intron | 10.0% |
| !! | AAAATATAAAGAAAATCTTT+GGG | + | chr1_4:58570034-58570053 | Msa0173330:intron | 10.0% |
| !! | TAAAATATAAAGAAAATCTT+TGG | + | chr1_4:58570033-58570052 | Msa0173330:intron | 10.0% |
| !! | AAAATATAAAGAAAATCTTT+GGG | + | chr1_4:58570034-58570053 | Msa0173330:intron | 10.0% |
| !! | CAAAAATAAATTAATCCAAA+CGG | - | chr1_4:58568955-58568974 | None:intergenic | 15.0% |
| !!! | TTGGTTTGTTTTTTTTTTTT+TGG | + | chr1_4:58569416-58569435 | Msa0173330:intron | 15.0% |
| !!! | TGGTTTGTTTTTTTTTTTTT+GGG | + | chr1_4:58569417-58569436 | Msa0173330:intron | 15.0% |
| !! | AAATATAAAGAAAATCTTTG+GGG | + | chr1_4:58570035-58570054 | Msa0173330:intron | 15.0% |
| !! | AATATACATACAATATTTGT+TGG | - | chr1_4:58570670-58570689 | None:intergenic | 15.0% |
| !!! | TATAATATAACTTGTATTCA+AGG | - | chr1_4:58570945-58570964 | None:intergenic | 15.0% |
| !! | AAGTTATATTATATAACCTA+TGG | + | chr1_4:58570952-58570971 | Msa0173330:intron | 15.0% |
| !! | CAAAAATAAATTAATCCAAA+CGG | - | chr1_4:58568955-58568974 | None:intergenic | 15.0% |
| !!! | TTGGTTTGTTTTTTTTTTTT+TGG | + | chr1_4:58569416-58569435 | Msa0173330:intron | 15.0% |
| !!! | TGGTTTGTTTTTTTTTTTTT+GGG | + | chr1_4:58569417-58569436 | Msa0173330:intron | 15.0% |
| !! | AAATATAAAGAAAATCTTTG+GGG | + | chr1_4:58570035-58570054 | Msa0173330:intron | 15.0% |
| !! | AATATACATACAATATTTGT+TGG | - | chr1_4:58570670-58570689 | None:intergenic | 15.0% |
| !!! | TATAATATAACTTGTATTCA+AGG | - | chr1_4:58570945-58570964 | None:intergenic | 15.0% |
| !! | AAGTTATATTATATAACCTA+TGG | + | chr1_4:58570952-58570971 | Msa0173330:intron | 15.0% |
| !!! | AAATTGAAATTTGTAGGTTT+TGG | - | chr1_4:58569300-58569319 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTTTTTTTGGGA+TGG | + | chr1_4:58569421-58569440 | Msa0173330:intron | 20.0% |
| !!! | TGTTTTTTTTTTTTTGGGAT+GGG | + | chr1_4:58569422-58569441 | Msa0173330:intron | 20.0% |
| !! | ATGATAGAAGTAATTATTCA+TGG | - | chr1_4:58569709-58569728 | None:intergenic | 20.0% |
| !! | TATATGCTTGAATTTGATAT+TGG | + | chr1_4:58570102-58570121 | Msa0173330:intron | 20.0% |
| !! | TGTAATATCTAAACATGAAA+AGG | - | chr1_4:58570448-58570467 | None:intergenic | 20.0% |
| !!! | AAATTGAAATTTGTAGGTTT+TGG | - | chr1_4:58569300-58569319 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTTTTTTTGGGA+TGG | + | chr1_4:58569421-58569440 | Msa0173330:intron | 20.0% |
| !!! | TGTTTTTTTTTTTTTGGGAT+GGG | + | chr1_4:58569422-58569441 | Msa0173330:intron | 20.0% |
| !! | ATGATAGAAGTAATTATTCA+TGG | - | chr1_4:58569709-58569728 | None:intergenic | 20.0% |
| !! | TATATGCTTGAATTTGATAT+TGG | + | chr1_4:58570102-58570121 | Msa0173330:intron | 20.0% |
| !! | TGTAATATCTAAACATGAAA+AGG | - | chr1_4:58570448-58570467 | None:intergenic | 20.0% |
| ! | GATAGCAAATTGAAATTTGT+AGG | - | chr1_4:58569306-58569325 | None:intergenic | 25.0% |
| ! | CTCTGTTTAGTAAAAAATAG+CGG | - | chr1_4:58569340-58569359 | None:intergenic | 25.0% |
| ! | TTTCTATCAAATTGCTAATG+TGG | + | chr1_4:58569389-58569408 | Msa0173330:intron | 25.0% |
| ! | TTCTATCAAATTGCTAATGT+GGG | + | chr1_4:58569390-58569409 | Msa0173330:intron | 25.0% |
| ! | TTAGTCAAATACTCTTATTG+TGG | - | chr1_4:58569899-58569918 | None:intergenic | 25.0% |
| !! | TTGAATTTGATATTGGTTGA+TGG | + | chr1_4:58570109-58570128 | Msa0173330:intron | 25.0% |
| !! | AGTACGTAATGATAAAGTTT+TGG | - | chr1_4:58570168-58570187 | None:intergenic | 25.0% |
| ! | TGCATATATATAGTTGTCTT+TGG | + | chr1_4:58570246-58570265 | Msa0173330:intron | 25.0% |
| ! | TATTAGACATCAATCTTTCA+TGG | + | chr1_4:58570311-58570330 | Msa0173330:CDS | 25.0% |
| ! | AATATATGTCATGCCTTAAA+TGG | - | chr1_4:58570400-58570419 | None:intergenic | 25.0% |
| !!! | AGAGCAATTTTTTACTTGTA+AGG | + | chr1_4:58570484-58570503 | Msa0173330:intron | 25.0% |
| ! | ATGTGTTGCATATATAATAG+TGG | - | chr1_4:58570623-58570642 | None:intergenic | 25.0% |
| ! | TATGCAACACATATATTTGA+CGG | + | chr1_4:58570631-58570650 | Msa0173330:CDS | 25.0% |
| ! | ACACATATAATTGATTGAGA+AGG | - | chr1_4:58570876-58570895 | None:intergenic | 25.0% |
| ! | TATTATATAACCTATGGTTG+TGG | + | chr1_4:58570958-58570977 | Msa0173330:intron | 25.0% |
| ! | TTGAATTAATTGTGCCTAAT+TGG | + | chr1_4:58571040-58571059 | Msa0173330:intron | 25.0% |
| ! | GATAGCAAATTGAAATTTGT+AGG | - | chr1_4:58569306-58569325 | None:intergenic | 25.0% |
| ! | CTCTGTTTAGTAAAAAATAG+CGG | - | chr1_4:58569340-58569359 | None:intergenic | 25.0% |
| ! | TTTCTATCAAATTGCTAATG+TGG | + | chr1_4:58569389-58569408 | Msa0173330:intron | 25.0% |
| ! | TTCTATCAAATTGCTAATGT+GGG | + | chr1_4:58569390-58569409 | Msa0173330:intron | 25.0% |
| ! | TTAGTCAAATACTCTTATTG+TGG | - | chr1_4:58569899-58569918 | None:intergenic | 25.0% |
| !! | TTGAATTTGATATTGGTTGA+TGG | + | chr1_4:58570109-58570128 | Msa0173330:intron | 25.0% |
| !! | AGTACGTAATGATAAAGTTT+TGG | - | chr1_4:58570168-58570187 | None:intergenic | 25.0% |
| ! | TGCATATATATAGTTGTCTT+TGG | + | chr1_4:58570246-58570265 | Msa0173330:intron | 25.0% |
| ! | TATTAGACATCAATCTTTCA+TGG | + | chr1_4:58570311-58570330 | Msa0173330:CDS | 25.0% |
| ! | AATATATGTCATGCCTTAAA+TGG | - | chr1_4:58570400-58570419 | None:intergenic | 25.0% |
| !!! | AGAGCAATTTTTTACTTGTA+AGG | + | chr1_4:58570484-58570503 | Msa0173330:intron | 25.0% |
| ! | ATGTGTTGCATATATAATAG+TGG | - | chr1_4:58570623-58570642 | None:intergenic | 25.0% |
| ! | TATGCAACACATATATTTGA+CGG | + | chr1_4:58570631-58570650 | Msa0173330:CDS | 25.0% |
| ! | ACACATATAATTGATTGAGA+AGG | - | chr1_4:58570876-58570895 | None:intergenic | 25.0% |
| ! | TATTATATAACCTATGGTTG+TGG | + | chr1_4:58570958-58570977 | Msa0173330:intron | 25.0% |
| ! | TTGAATTAATTGTGCCTAAT+TGG | + | chr1_4:58571040-58571059 | Msa0173330:intron | 25.0% |
| !! | TCATTGATTTAGGCTATGTT+TGG | + | chr1_4:58568875-58568894 | Msa0173330:intron | 30.0% |
| GTATATTCATAAGCTTGTCA+AGG | + | chr1_4:58569016-58569035 | Msa0173330:intron | 30.0% | |
| !! | GTAGGTTTTGGTAAAATTAG+CGG | - | chr1_4:58569288-58569307 | None:intergenic | 30.0% |
| ! | CACACCAAATATCATTTTCT+CGG | - | chr1_4:58569512-58569531 | None:intergenic | 30.0% |
| !!! | TTTCCATTGCTATTTTGGTA+TGG | + | chr1_4:58569945-58569964 | Msa0173330:intron | 30.0% |
| TAACCATACCAAAATAGCAA+TGG | - | chr1_4:58569951-58569970 | None:intergenic | 30.0% | |
| ATATACAGAAATGAACGCAA+AGG | - | chr1_4:58569975-58569994 | None:intergenic | 30.0% | |
| ! | TATAAAGAAAATCTTTGGGG+TGG | + | chr1_4:58570038-58570057 | Msa0173330:intron | 30.0% |
| TAATGTTCACTTACAATGCA+TGG | + | chr1_4:58570195-58570214 | Msa0173330:intron | 30.0% | |
| ! | TTTTGTTCTGATGTTCAACT+TGG | + | chr1_4:58570284-58570303 | Msa0173330:intron | 30.0% |
| ! | AAGAAGAGTGCAAATTTGTA+TGG | + | chr1_4:58570363-58570382 | Msa0173330:intron | 30.0% |
| ! | AGAAGAGTGCAAATTTGTAT+GGG | + | chr1_4:58570364-58570383 | Msa0173330:intron | 30.0% |
| TTCAGAACTGAAATTACAGA+AGG | - | chr1_4:58570701-58570720 | None:intergenic | 30.0% | |
| ! | CATTTCAATGCTCTTTTATC+AGG | + | chr1_4:58570760-58570779 | Msa0173330:intron | 30.0% |
| ! | GTTTCTTTGACTTTCTCTAT+GGG | - | chr1_4:58570821-58570840 | None:intergenic | 30.0% |
| ! | AGTTTCTTTGACTTTCTCTA+TGG | - | chr1_4:58570822-58570841 | None:intergenic | 30.0% |
| AACAACTTAAATTGTAGACC+AGG | + | chr1_4:58570985-58571004 | Msa0173330:intron | 30.0% | |
| CTGCATATTCAAAACCAATT+AGG | - | chr1_4:58571057-58571076 | None:intergenic | 30.0% | |
| ATAGAAGACAAAGGAAAGAA+AGG | + | chr1_4:58571117-58571136 | Msa0173330:CDS | 30.0% | |
| ! | TCAACTTGCTTATCAAATTC+AGG | - | chr1_4:58571158-58571177 | None:intergenic | 30.0% |
| ! | GAATTTGATAAGCAAGTTGA+TGG | + | chr1_4:58571158-58571177 | Msa0173330:CDS | 30.0% |
| !! | TCATTGATTTAGGCTATGTT+TGG | + | chr1_4:58568875-58568894 | Msa0173330:intron | 30.0% |
| GTATATTCATAAGCTTGTCA+AGG | + | chr1_4:58569016-58569035 | Msa0173330:intron | 30.0% | |
| !! | GTAGGTTTTGGTAAAATTAG+CGG | - | chr1_4:58569288-58569307 | None:intergenic | 30.0% |
| ! | CACACCAAATATCATTTTCT+CGG | - | chr1_4:58569512-58569531 | None:intergenic | 30.0% |
| !!! | TTTCCATTGCTATTTTGGTA+TGG | + | chr1_4:58569945-58569964 | Msa0173330:intron | 30.0% |
| TAACCATACCAAAATAGCAA+TGG | - | chr1_4:58569951-58569970 | None:intergenic | 30.0% | |
| ATATACAGAAATGAACGCAA+AGG | - | chr1_4:58569975-58569994 | None:intergenic | 30.0% | |
| ! | TATAAAGAAAATCTTTGGGG+TGG | + | chr1_4:58570038-58570057 | Msa0173330:intron | 30.0% |
| TAATGTTCACTTACAATGCA+TGG | + | chr1_4:58570195-58570214 | Msa0173330:intron | 30.0% | |
| ! | TTTTGTTCTGATGTTCAACT+TGG | + | chr1_4:58570284-58570303 | Msa0173330:intron | 30.0% |
| ! | AAGAAGAGTGCAAATTTGTA+TGG | + | chr1_4:58570363-58570382 | Msa0173330:intron | 30.0% |
| ! | AGAAGAGTGCAAATTTGTAT+GGG | + | chr1_4:58570364-58570383 | Msa0173330:intron | 30.0% |
| TTCAGAACTGAAATTACAGA+AGG | - | chr1_4:58570701-58570720 | None:intergenic | 30.0% | |
| ! | CATTTCAATGCTCTTTTATC+AGG | + | chr1_4:58570760-58570779 | Msa0173330:intron | 30.0% |
| ! | GTTTCTTTGACTTTCTCTAT+GGG | - | chr1_4:58570821-58570840 | None:intergenic | 30.0% |
| ! | AGTTTCTTTGACTTTCTCTA+TGG | - | chr1_4:58570822-58570841 | None:intergenic | 30.0% |
| AACAACTTAAATTGTAGACC+AGG | + | chr1_4:58570985-58571004 | Msa0173330:intron | 30.0% | |
| CTGCATATTCAAAACCAATT+AGG | - | chr1_4:58571057-58571076 | None:intergenic | 30.0% | |
| ATAGAAGACAAAGGAAAGAA+AGG | + | chr1_4:58571117-58571136 | Msa0173330:CDS | 30.0% | |
| ! | TCAACTTGCTTATCAAATTC+AGG | - | chr1_4:58571158-58571177 | None:intergenic | 30.0% |
| ! | GAATTTGATAAGCAAGTTGA+TGG | + | chr1_4:58571158-58571177 | Msa0173330:CDS | 30.0% |
| ACCAACTATAAGCACGAAAA+TGG | - | chr1_4:58568906-58568925 | None:intergenic | 35.0% | |
| AAATTGCTAATGTGGGTGAT+TGG | + | chr1_4:58569397-58569416 | Msa0173330:intron | 35.0% | |
| !! | CTTTGAAGTTCCAATACAGA+TGG | + | chr1_4:58569477-58569496 | Msa0173330:CDS | 35.0% |
| TCTGCCGAGAAAATGATATT+TGG | + | chr1_4:58569505-58569524 | Msa0173330:CDS | 35.0% | |
| ! | CGAGAAAATGATATTTGGTG+TGG | + | chr1_4:58569510-58569529 | Msa0173330:CDS | 35.0% |
| !! | AAAATGATATTTGGTGTGGC+TGG | + | chr1_4:58569514-58569533 | Msa0173330:CDS | 35.0% |
| !! | AAATGATATTTGGTGTGGCT+GGG | + | chr1_4:58569515-58569534 | Msa0173330:CDS | 35.0% |
| AAGAAGAGCAGAGCTAATTA+AGG | + | chr1_4:58569549-58569568 | Msa0173330:CDS | 35.0% | |
| AAATTTCTTCATGTCAGACG+AGG | + | chr1_4:58569631-58569650 | Msa0173330:intron | 35.0% | |
| AATTAACAGTTTACTCGTCG+TGG | + | chr1_4:58569843-58569862 | Msa0173330:intron | 35.0% | |
| !!! | TCCTCTTTCCATTGCTATTT+TGG | + | chr1_4:58569940-58569959 | Msa0173330:intron | 35.0% |
| ACCAAAATAGCAATGGAAAG+AGG | - | chr1_4:58569944-58569963 | None:intergenic | 35.0% | |
| ! | AGATTGCATAAAGTATCCGA+TGG | + | chr1_4:58570334-58570353 | Msa0173330:CDS | 35.0% |
| CTGATGTGTTGTCTTCTTTA+TGG | + | chr1_4:58570422-58570441 | Msa0173330:intron | 35.0% | |
| CCTTTCTTAGAAACTTCAGA+AGG | - | chr1_4:58570582-58570601 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTTTCTAAGAA+AGG | + | chr1_4:58570579-58570598 | Msa0173330:CDS | 35.0% |
| TAAGAAAGGAATGTGATGAG+AGG | + | chr1_4:58570593-58570612 | Msa0173330:CDS | 35.0% | |
| AAGAAAGGAATGTGATGAGA+GGG | + | chr1_4:58570594-58570613 | Msa0173330:CDS | 35.0% | |
| ACATATATTTGACGGTCTTG+AGG | + | chr1_4:58570639-58570658 | Msa0173330:CDS | 35.0% | |
| !! | AAGAGCATTGAAATGACAGA+AGG | - | chr1_4:58570755-58570774 | None:intergenic | 35.0% |
| TATCAGGTTTATGTTGCTCA+TGG | + | chr1_4:58570776-58570795 | Msa0173330:intron | 35.0% | |
| AACTAGCAAACTGTCACTAA+TGG | + | chr1_4:58570838-58570857 | Msa0173330:CDS | 35.0% | |
| AAATTGTAAATTGCACAGCC+TGG | - | chr1_4:58571006-58571025 | None:intergenic | 35.0% | |
| GAGATGAAGATAGAAGACAA+AGG | + | chr1_4:58571108-58571127 | Msa0173330:CDS | 35.0% | |
| AAGACAAAGGAAAGAAAGGA+AGG | + | chr1_4:58571121-58571140 | Msa0173330:CDS | 35.0% | |
| CTTGCTTATCAAATTCAGGA+AGG | - | chr1_4:58571154-58571173 | None:intergenic | 35.0% | |
| CCATTATTAGTAACTCGAAC+CGG | - | chr1_4:58571218-58571237 | None:intergenic | 35.0% | |
| ! | TTCGAGTTACTAATAATGGC+TGG | + | chr1_4:58571219-58571238 | Msa0173330:CDS | 35.0% |
| TCGAGTTACTAATAATGGCT+GGG | + | chr1_4:58571220-58571239 | Msa0173330:CDS | 35.0% | |
| ACCAACTATAAGCACGAAAA+TGG | - | chr1_4:58568906-58568925 | None:intergenic | 35.0% | |
| AAATTGCTAATGTGGGTGAT+TGG | + | chr1_4:58569397-58569416 | Msa0173330:intron | 35.0% | |
| !! | CTTTGAAGTTCCAATACAGA+TGG | + | chr1_4:58569477-58569496 | Msa0173330:CDS | 35.0% |
| TCTGCCGAGAAAATGATATT+TGG | + | chr1_4:58569505-58569524 | Msa0173330:CDS | 35.0% | |
| ! | CGAGAAAATGATATTTGGTG+TGG | + | chr1_4:58569510-58569529 | Msa0173330:CDS | 35.0% |
| !! | AAAATGATATTTGGTGTGGC+TGG | + | chr1_4:58569514-58569533 | Msa0173330:CDS | 35.0% |
| !! | AAATGATATTTGGTGTGGCT+GGG | + | chr1_4:58569515-58569534 | Msa0173330:CDS | 35.0% |
| AAGAAGAGCAGAGCTAATTA+AGG | + | chr1_4:58569549-58569568 | Msa0173330:CDS | 35.0% | |
| AAATTTCTTCATGTCAGACG+AGG | + | chr1_4:58569631-58569650 | Msa0173330:intron | 35.0% | |
| AATTAACAGTTTACTCGTCG+TGG | + | chr1_4:58569843-58569862 | Msa0173330:intron | 35.0% | |
| !!! | TCCTCTTTCCATTGCTATTT+TGG | + | chr1_4:58569940-58569959 | Msa0173330:intron | 35.0% |
| ACCAAAATAGCAATGGAAAG+AGG | - | chr1_4:58569944-58569963 | None:intergenic | 35.0% | |
| ! | AGATTGCATAAAGTATCCGA+TGG | + | chr1_4:58570334-58570353 | Msa0173330:CDS | 35.0% |
| CTGATGTGTTGTCTTCTTTA+TGG | + | chr1_4:58570422-58570441 | Msa0173330:intron | 35.0% | |
| CCTTTCTTAGAAACTTCAGA+AGG | - | chr1_4:58570582-58570601 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTTTCTAAGAA+AGG | + | chr1_4:58570579-58570598 | Msa0173330:CDS | 35.0% |
| TAAGAAAGGAATGTGATGAG+AGG | + | chr1_4:58570593-58570612 | Msa0173330:CDS | 35.0% | |
| AAGAAAGGAATGTGATGAGA+GGG | + | chr1_4:58570594-58570613 | Msa0173330:CDS | 35.0% | |
| ACATATATTTGACGGTCTTG+AGG | + | chr1_4:58570639-58570658 | Msa0173330:CDS | 35.0% | |
| !! | AAGAGCATTGAAATGACAGA+AGG | - | chr1_4:58570755-58570774 | None:intergenic | 35.0% |
| TATCAGGTTTATGTTGCTCA+TGG | + | chr1_4:58570776-58570795 | Msa0173330:intron | 35.0% | |
| AACTAGCAAACTGTCACTAA+TGG | + | chr1_4:58570838-58570857 | Msa0173330:CDS | 35.0% | |
| AAATTGTAAATTGCACAGCC+TGG | - | chr1_4:58571006-58571025 | None:intergenic | 35.0% | |
| GAGATGAAGATAGAAGACAA+AGG | + | chr1_4:58571108-58571127 | Msa0173330:CDS | 35.0% | |
| AAGACAAAGGAAAGAAAGGA+AGG | + | chr1_4:58571121-58571140 | Msa0173330:CDS | 35.0% | |
| CTTGCTTATCAAATTCAGGA+AGG | - | chr1_4:58571154-58571173 | None:intergenic | 35.0% | |
| CCATTATTAGTAACTCGAAC+CGG | - | chr1_4:58571218-58571237 | None:intergenic | 35.0% | |
| ! | TTCGAGTTACTAATAATGGC+TGG | + | chr1_4:58571219-58571238 | Msa0173330:CDS | 35.0% |
| TCGAGTTACTAATAATGGCT+GGG | + | chr1_4:58571220-58571239 | Msa0173330:CDS | 35.0% | |
| !! | GCCATTTTCGTGCTTATAGT+TGG | + | chr1_4:58568902-58568921 | Msa0173330:intron | 40.0% |
| AAAATTGCTTCAAGCTCGTG+AGG | - | chr1_4:58569181-58569200 | None:intergenic | 40.0% | |
| !!! | AGAAGAGATGTTGCTTTTGC+TGG | + | chr1_4:58569454-58569473 | Msa0173330:CDS | 40.0% |
| GCAGAAATGTCCATCTGTAT+TGG | - | chr1_4:58569490-58569509 | None:intergenic | 40.0% | |
| TTAAGGTTAGAAGCTGTGCA+CGG | + | chr1_4:58569566-58569585 | Msa0173330:intron | 40.0% | |
| TGGAAAGAGGAAGATAGCTT+AGG | - | chr1_4:58569931-58569950 | None:intergenic | 40.0% | |
| ATATGAGCTGTACATGCATG+TGG | + | chr1_4:58569991-58570010 | Msa0173330:intron | 40.0% | |
| TTCACTTACAATGCATGGCT+AGG | + | chr1_4:58570200-58570219 | Msa0173330:intron | 40.0% | |
| CACTCTTCTTCTTTGACCAT+CGG | - | chr1_4:58570353-58570372 | None:intergenic | 40.0% | |
| GTCATGCCTTAAATGGTTTG+AGG | - | chr1_4:58570393-58570412 | None:intergenic | 40.0% | |
| AGAAAGGAATGTGATGAGAG+GGG | + | chr1_4:58570595-58570614 | Msa0173330:CDS | 40.0% | |
| TATTTGACGGTCTTGAGGAT+TGG | + | chr1_4:58570644-58570663 | Msa0173330:CDS | 40.0% | |
| AGGTTTATGTTGCTCATGGA+AGG | + | chr1_4:58570780-58570799 | Msa0173330:intron | 40.0% | |
| GTTGTTTACTCCACAACCAT+AGG | - | chr1_4:58570971-58570990 | None:intergenic | 40.0% | |
| TGCAGAGAACAGTAGAAGTT+TGG | + | chr1_4:58571072-58571091 | Msa0173330:intron | 40.0% | |
| GAACAGTAGAAGTTTGGCTA+CGG | + | chr1_4:58571078-58571097 | Msa0173330:CDS | 40.0% | |
| ! | CCGGTTCGAGTTACTAATAA+TGG | + | chr1_4:58571215-58571234 | Msa0173330:CDS | 40.0% |
| ! | TAGGAGGAAGTTTTCTTCAC+CGG | - | chr1_4:58571273-58571292 | None:intergenic | 40.0% |
| ! | TCAAAACTCGGTTTGAGCTT+AGG | - | chr1_4:58571292-58571311 | None:intergenic | 40.0% |
| ! | TAAGCTCAAACCGAGTTTTG+AGG | + | chr1_4:58571291-58571310 | Msa0173330:CDS | 40.0% |
| !! | AAGCTCAAACCGAGTTTTGA+GGG | + | chr1_4:58571292-58571311 | Msa0173330:CDS | 40.0% |
| !! | GCCATTTTCGTGCTTATAGT+TGG | + | chr1_4:58568902-58568921 | Msa0173330:intron | 40.0% |
| AAAATTGCTTCAAGCTCGTG+AGG | - | chr1_4:58569181-58569200 | None:intergenic | 40.0% | |
| !!! | AGAAGAGATGTTGCTTTTGC+TGG | + | chr1_4:58569454-58569473 | Msa0173330:CDS | 40.0% |
| GCAGAAATGTCCATCTGTAT+TGG | - | chr1_4:58569490-58569509 | None:intergenic | 40.0% | |
| TTAAGGTTAGAAGCTGTGCA+CGG | + | chr1_4:58569566-58569585 | Msa0173330:intron | 40.0% | |
| TGGAAAGAGGAAGATAGCTT+AGG | - | chr1_4:58569931-58569950 | None:intergenic | 40.0% | |
| ATATGAGCTGTACATGCATG+TGG | + | chr1_4:58569991-58570010 | Msa0173330:intron | 40.0% | |
| TTCACTTACAATGCATGGCT+AGG | + | chr1_4:58570200-58570219 | Msa0173330:intron | 40.0% | |
| CACTCTTCTTCTTTGACCAT+CGG | - | chr1_4:58570353-58570372 | None:intergenic | 40.0% | |
| GTCATGCCTTAAATGGTTTG+AGG | - | chr1_4:58570393-58570412 | None:intergenic | 40.0% | |
| AGAAAGGAATGTGATGAGAG+GGG | + | chr1_4:58570595-58570614 | Msa0173330:CDS | 40.0% | |
| TATTTGACGGTCTTGAGGAT+TGG | + | chr1_4:58570644-58570663 | Msa0173330:CDS | 40.0% | |
| AGGTTTATGTTGCTCATGGA+AGG | + | chr1_4:58570780-58570799 | Msa0173330:intron | 40.0% | |
| GTTGTTTACTCCACAACCAT+AGG | - | chr1_4:58570971-58570990 | None:intergenic | 40.0% | |
| TGCAGAGAACAGTAGAAGTT+TGG | + | chr1_4:58571072-58571091 | Msa0173330:intron | 40.0% | |
| GAACAGTAGAAGTTTGGCTA+CGG | + | chr1_4:58571078-58571097 | Msa0173330:CDS | 40.0% | |
| ! | CCGGTTCGAGTTACTAATAA+TGG | + | chr1_4:58571215-58571234 | Msa0173330:CDS | 40.0% |
| ! | TAGGAGGAAGTTTTCTTCAC+CGG | - | chr1_4:58571273-58571292 | None:intergenic | 40.0% |
| ! | TCAAAACTCGGTTTGAGCTT+AGG | - | chr1_4:58571292-58571311 | None:intergenic | 40.0% |
| ! | TAAGCTCAAACCGAGTTTTG+AGG | + | chr1_4:58571291-58571310 | Msa0173330:CDS | 40.0% |
| !! | AAGCTCAAACCGAGTTTTGA+GGG | + | chr1_4:58571292-58571311 | Msa0173330:CDS | 40.0% |
| TGATATGATCGTCAGCCGTT+TGG | + | chr1_4:58568937-58568956 | Msa0173330:intron | 45.0% | |
| ! | AGATCTGGGCTTGTTTGGAT+TGG | - | chr1_4:58569154-58569173 | None:intergenic | 45.0% |
| ! | GAAACAGATCTGGGCTTGTT+TGG | - | chr1_4:58569159-58569178 | None:intergenic | 45.0% |
| !!! | TTTTTTGGGATGGGACACAG+TGG | + | chr1_4:58569431-58569450 | Msa0173330:intron | 45.0% |
| !! | ATTAGCTCTGCTCTTCTTGC+AGG | - | chr1_4:58569547-58569566 | None:intergenic | 45.0% |
| TTCATGTCAGACGAGGTTAC+TGG | + | chr1_4:58569638-58569657 | Msa0173330:intron | 45.0% | |
| ACGAGGTTACTGGTGATTGT+AGG | + | chr1_4:58569648-58569667 | Msa0173330:intron | 45.0% | |
| !! | TGCATGGCTAGGTTCTGAAA+AGG | + | chr1_4:58570211-58570230 | Msa0173330:intron | 45.0% |
| !! | GCATGGCTAGGTTCTGAAAA+GGG | + | chr1_4:58570212-58570231 | Msa0173330:intron | 45.0% |
| !! | AGGTTCTGAAAAGGGTACAC+AGG | + | chr1_4:58570220-58570239 | Msa0173330:intron | 45.0% |
| GTTCTGATGTTCAACTTGGC+AGG | + | chr1_4:58570288-58570307 | Msa0173330:intron | 45.0% | |
| GGGTCTCCTCAAACCATTTA+AGG | + | chr1_4:58570384-58570403 | Msa0173330:intron | 45.0% | |
| AGGTTGCTCATTCCTTTCCT+AGG | + | chr1_4:58570504-58570523 | Msa0173330:intron | 45.0% | |
| CCAGAAGAAGAACCTAGGAA+AGG | - | chr1_4:58570519-58570538 | None:intergenic | 45.0% | |
| CCTTTCCTAGGTTCTTCTTC+TGG | + | chr1_4:58570516-58570535 | Msa0173330:intron | 45.0% | |
| CTCATCCAGAAGAAGAACCT+AGG | - | chr1_4:58570524-58570543 | None:intergenic | 45.0% | |
| CAGCTCTTGCTAGAACATCA+AGG | - | chr1_4:58570558-58570577 | None:intergenic | 45.0% | |
| TTATGTTGCTCATGGAAGGC+TGG | + | chr1_4:58570784-58570803 | Msa0173330:CDS | 45.0% | |
| AGTAGAAGTTTGGCTACGGA+AGG | + | chr1_4:58571082-58571101 | Msa0173330:CDS | 45.0% | |
| ! | GAAGTTTTCTTCACCGGCAA+TGG | - | chr1_4:58571267-58571286 | None:intergenic | 45.0% |
| ! | AAACTCGGTTTGAGCTTAGG+AGG | - | chr1_4:58571289-58571308 | None:intergenic | 45.0% |
| !!! | AGCTCAAACCGAGTTTTGAG+GGG | + | chr1_4:58571293-58571312 | Msa0173330:CDS | 45.0% |
| TGATATGATCGTCAGCCGTT+TGG | + | chr1_4:58568937-58568956 | Msa0173330:intron | 45.0% | |
| ! | AGATCTGGGCTTGTTTGGAT+TGG | - | chr1_4:58569154-58569173 | None:intergenic | 45.0% |
| ! | GAAACAGATCTGGGCTTGTT+TGG | - | chr1_4:58569159-58569178 | None:intergenic | 45.0% |
| !!! | TTTTTTGGGATGGGACACAG+TGG | + | chr1_4:58569431-58569450 | Msa0173330:intron | 45.0% |
| !! | ATTAGCTCTGCTCTTCTTGC+AGG | - | chr1_4:58569547-58569566 | None:intergenic | 45.0% |
| TTCATGTCAGACGAGGTTAC+TGG | + | chr1_4:58569638-58569657 | Msa0173330:intron | 45.0% | |
| ACGAGGTTACTGGTGATTGT+AGG | + | chr1_4:58569648-58569667 | Msa0173330:intron | 45.0% | |
| !! | TGCATGGCTAGGTTCTGAAA+AGG | + | chr1_4:58570211-58570230 | Msa0173330:intron | 45.0% |
| !! | GCATGGCTAGGTTCTGAAAA+GGG | + | chr1_4:58570212-58570231 | Msa0173330:intron | 45.0% |
| !! | AGGTTCTGAAAAGGGTACAC+AGG | + | chr1_4:58570220-58570239 | Msa0173330:intron | 45.0% |
| GTTCTGATGTTCAACTTGGC+AGG | + | chr1_4:58570288-58570307 | Msa0173330:intron | 45.0% | |
| GGGTCTCCTCAAACCATTTA+AGG | + | chr1_4:58570384-58570403 | Msa0173330:intron | 45.0% | |
| AGGTTGCTCATTCCTTTCCT+AGG | + | chr1_4:58570504-58570523 | Msa0173330:intron | 45.0% | |
| CCAGAAGAAGAACCTAGGAA+AGG | - | chr1_4:58570519-58570538 | None:intergenic | 45.0% | |
| CCTTTCCTAGGTTCTTCTTC+TGG | + | chr1_4:58570516-58570535 | Msa0173330:intron | 45.0% | |
| CTCATCCAGAAGAAGAACCT+AGG | - | chr1_4:58570524-58570543 | None:intergenic | 45.0% | |
| CAGCTCTTGCTAGAACATCA+AGG | - | chr1_4:58570558-58570577 | None:intergenic | 45.0% | |
| TTATGTTGCTCATGGAAGGC+TGG | + | chr1_4:58570784-58570803 | Msa0173330:CDS | 45.0% | |
| AGTAGAAGTTTGGCTACGGA+AGG | + | chr1_4:58571082-58571101 | Msa0173330:CDS | 45.0% | |
| ! | GAAGTTTTCTTCACCGGCAA+TGG | - | chr1_4:58571267-58571286 | None:intergenic | 45.0% |
| ! | AAACTCGGTTTGAGCTTAGG+AGG | - | chr1_4:58571289-58571308 | None:intergenic | 45.0% |
| !!! | AGCTCAAACCGAGTTTTGAG+GGG | + | chr1_4:58571293-58571312 | Msa0173330:CDS | 45.0% |
| !!! | TTTTTTAATTAAGATAATAA+GGG | - | chr1_4:58569240-58569259 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATTAAGATAATA+AGG | - | chr1_4:58569241-58569260 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTAAGATAATAA+GGG | - | chr1_4:58569240-58569259 | None:intergenic | 5.0% |
| !!! | TTTTTTTAATTAAGATAATA+AGG | - | chr1_4:58569241-58569260 | None:intergenic | 5.0% |
| GCTCGTGAGGAAACAGATCT+GGG | - | chr1_4:58569168-58569187 | None:intergenic | 50.0% | |
| AGCTCGTGAGGAAACAGATC+TGG | - | chr1_4:58569169-58569188 | None:intergenic | 50.0% | |
| TAATTATGCGCGCTCCTCGA+CGG | + | chr1_4:58570915-58570934 | Msa0173330:intron | 50.0% | |
| GTATTCAAGGTTACCCGTCG+AGG | - | chr1_4:58570932-58570951 | None:intergenic | 50.0% | |
| AGGAAAGAAAGGAAGGCTGC+TGG | + | chr1_4:58571128-58571147 | Msa0173330:CDS | 50.0% | |
| ! | GTTGATGGAAGCCGTGTAGT+TGG | + | chr1_4:58571173-58571192 | Msa0173330:CDS | 50.0% |
| ATGGAAGCCGTGTAGTTGGA+GGG | + | chr1_4:58571177-58571196 | Msa0173330:CDS | 50.0% | |
| CGGTTACATTCCACCATTGC+CGG | + | chr1_4:58571251-58571270 | Msa0173330:CDS | 50.0% | |
| ! | GTTTTCTTCACCGGCAATGG+TGG | - | chr1_4:58571264-58571283 | None:intergenic | 50.0% |
| !!! | GCTCAAACCGAGTTTTGAGG+GGG | + | chr1_4:58571294-58571313 | Msa0173330:CDS | 50.0% |
| GCTCGTGAGGAAACAGATCT+GGG | - | chr1_4:58569168-58569187 | None:intergenic | 50.0% | |
| AGCTCGTGAGGAAACAGATC+TGG | - | chr1_4:58569169-58569188 | None:intergenic | 50.0% | |
| TAATTATGCGCGCTCCTCGA+CGG | + | chr1_4:58570915-58570934 | Msa0173330:intron | 50.0% | |
| GTATTCAAGGTTACCCGTCG+AGG | - | chr1_4:58570932-58570951 | None:intergenic | 50.0% | |
| AGGAAAGAAAGGAAGGCTGC+TGG | + | chr1_4:58571128-58571147 | Msa0173330:CDS | 50.0% | |
| ! | GTTGATGGAAGCCGTGTAGT+TGG | + | chr1_4:58571173-58571192 | Msa0173330:CDS | 50.0% |
| ATGGAAGCCGTGTAGTTGGA+GGG | + | chr1_4:58571177-58571196 | Msa0173330:CDS | 50.0% | |
| CGGTTACATTCCACCATTGC+CGG | + | chr1_4:58571251-58571270 | Msa0173330:CDS | 50.0% | |
| ! | GTTTTCTTCACCGGCAATGG+TGG | - | chr1_4:58571264-58571283 | None:intergenic | 50.0% |
| !!! | GCTCAAACCGAGTTTTGAGG+GGG | + | chr1_4:58571294-58571313 | Msa0173330:CDS | 50.0% |
| AATTATGCGCGCTCCTCGAC+GGG | + | chr1_4:58570916-58570935 | Msa0173330:intron | 55.0% | |
| GATGGAAGCCGTGTAGTTGG+AGG | + | chr1_4:58571176-58571195 | Msa0173330:CDS | 55.0% | |
| TGGAAGCCGTGTAGTTGGAG+GGG | + | chr1_4:58571178-58571197 | Msa0173330:CDS | 55.0% | |
| CAGGATCCCCTCCAACTACA+CGG | - | chr1_4:58571187-58571206 | None:intergenic | 55.0% | |
| ACTAATAATGGCTGGGCCGC+AGG | + | chr1_4:58571227-58571246 | Msa0173330:CDS | 55.0% | |
| GGTGGAATGTAACCGACCTG+CGG | - | chr1_4:58571246-58571265 | None:intergenic | 55.0% | |
| AATTATGCGCGCTCCTCGAC+GGG | + | chr1_4:58570916-58570935 | Msa0173330:intron | 55.0% | |
| GATGGAAGCCGTGTAGTTGG+AGG | + | chr1_4:58571176-58571195 | Msa0173330:CDS | 55.0% | |
| TGGAAGCCGTGTAGTTGGAG+GGG | + | chr1_4:58571178-58571197 | Msa0173330:CDS | 55.0% | |
| CAGGATCCCCTCCAACTACA+CGG | - | chr1_4:58571187-58571206 | None:intergenic | 55.0% | |
| ACTAATAATGGCTGGGCCGC+AGG | + | chr1_4:58571227-58571246 | Msa0173330:CDS | 55.0% | |
| GGTGGAATGTAACCGACCTG+CGG | - | chr1_4:58571246-58571265 | None:intergenic | 55.0% | |
| ATAATGGCTGGGCCGCAGGT+CGG | + | chr1_4:58571231-58571250 | Msa0173330:CDS | 60.0% | |
| ATAATGGCTGGGCCGCAGGT+CGG | + | chr1_4:58571231-58571250 | Msa0173330:CDS | 60.0% | |
| AGGGGATCCTGCACGAGCTC+CGG | + | chr1_4:58571196-58571215 | Msa0173330:CDS | 65.0% | |
| ACTCGAACCGGAGCTCGTGC+AGG | - | chr1_4:58571206-58571225 | None:intergenic | 65.0% | |
| AGGGGATCCTGCACGAGCTC+CGG | + | chr1_4:58571196-58571215 | Msa0173330:CDS | 65.0% | |
| ACTCGAACCGGAGCTCGTGC+AGG | - | chr1_4:58571206-58571225 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58568868 | 58571319 | 58568868 | ID=Msa0173330;Name=Msa0173330 |
| chr1_4 | mRNA | 58568868 | 58571319 | 58568868 | ID=Msa0173330-mRNA-1;Parent=Msa0173330;Name=Msa0173330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.83|0.6|0.66|6|0|219 |
| chr1_4 | exon | 58568868 | 58568873 | 58568868 | ID=Msa0173330-mRNA-1:exon:18173;Parent=Msa0173330-mRNA-1 |
| chr1_4 | exon | 58569451 | 58569570 | 58569451 | ID=Msa0173330-mRNA-1:exon:18174;Parent=Msa0173330-mRNA-1 |
| chr1_4 | exon | 58570310 | 58570369 | 58570310 | ID=Msa0173330-mRNA-1:exon:18175;Parent=Msa0173330-mRNA-1 |
| chr1_4 | exon | 58570526 | 58570678 | 58570526 | ID=Msa0173330-mRNA-1:exon:18176;Parent=Msa0173330-mRNA-1 |
| chr1_4 | exon | 58570782 | 58570859 | 58570782 | ID=Msa0173330-mRNA-1:exon:18177;Parent=Msa0173330-mRNA-1 |
| chr1_4 | exon | 58571077 | 58571319 | 58571077 | ID=Msa0173330-mRNA-1:exon:18178;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58568868 | 58568873 | 58568868 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58569451 | 58569570 | 58569451 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58570310 | 58570369 | 58570310 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58570526 | 58570678 | 58570526 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58570782 | 58570859 | 58570782 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| chr1_4 | CDS | 58571077 | 58571319 | 58571077 | ID=Msa0173330-mRNA-1:cds;Parent=Msa0173330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
