Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172130 | sp|Q9FYL8|NFD2_ARATH | 57.047 | 149 | 64 | 0 | 30 | 178 | 42 | 190 | 4.66e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172130 | G7JNT6 | 97.191 | 178 | 5 | 0 | 1 | 178 | 1 | 178 | 2.50e-121 | 349 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1172130 | 0.829432 | 5.165616e-55 | -8.615850e-47 |
| Msa0006880 | Msa1172130 | -0.822824 | 1.926125e-53 | -8.615850e-47 |
| Msa0036370 | Msa1172130 | -0.843238 | 1.584492e-58 | -8.615850e-47 |
| Msa0043730 | Msa1172130 | -0.820349 | 7.190866e-53 | -8.615850e-47 |
| Msa0055150 | Msa1172130 | -0.810801 | 9.623404e-51 | -8.615850e-47 |
| Msa0072170 | Msa1172130 | -0.848170 | 7.269396e-60 | -8.615850e-47 |
| Msa0082830 | Msa1172130 | 0.801292 | 9.647041e-49 | -8.615850e-47 |
| Msa0085720 | Msa1172130 | -0.812262 | 4.630745e-51 | -8.615850e-47 |
| Msa0090030 | Msa1172130 | -0.874935 | 4.577587e-68 | -8.615850e-47 |
| Msa0090390 | Msa1172130 | -0.817562 | 3.091345e-52 | -8.615850e-47 |
| Msa0092170 | Msa1172130 | -0.830721 | 2.503711e-55 | -8.615850e-47 |
| Msa0099510 | Msa1172130 | -0.820793 | 5.685537e-53 | -8.615850e-47 |
| Msa0112300 | Msa1172130 | 0.849147 | 3.896083e-60 | -8.615850e-47 |
| Msa0116430 | Msa1172130 | -0.811161 | 8.040984e-51 | -8.615850e-47 |
| Msa0119320 | Msa1172130 | -0.824861 | 6.415977e-54 | -8.615850e-47 |
| Msa0120540 | Msa1172130 | -0.849882 | 2.431424e-60 | -8.615850e-47 |
| Msa0607290 | Msa1172130 | 0.804513 | 2.083381e-49 | -8.615850e-47 |
| Msa0608910 | Msa1172130 | -0.805298 | 1.428153e-49 | -8.615850e-47 |
| Msa0614990 | Msa1172130 | -0.810525 | 1.103717e-50 | -8.615850e-47 |
| Msa0618200 | Msa1172130 | 0.810646 | 1.039516e-50 | -8.615850e-47 |
| Msa0624550 | Msa1172130 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0628290 | Msa1172130 | -0.817390 | 3.381202e-52 | -8.615850e-47 |
| Msa0630950 | Msa1172130 | -0.835854 | 1.316411e-56 | -8.615850e-47 |
| Msa0649410 | Msa1172130 | -0.827297 | 1.691095e-54 | -8.615850e-47 |
| Msa0649450 | Msa1172130 | -0.820962 | 5.198393e-53 | -8.615850e-47 |
| Msa0653320 | Msa1172130 | 0.828150 | 1.055130e-54 | -8.615850e-47 |
| Msa0669190 | Msa1172130 | -0.818093 | 2.346313e-52 | -8.615850e-47 |
| Msa0679550 | Msa1172130 | -0.803815 | 2.911752e-49 | -8.615850e-47 |
| Msa0679810 | Msa1172130 | -0.808014 | 3.812392e-50 | -8.615850e-47 |
| Msa0693790 | Msa1172130 | -0.820255 | 7.553458e-53 | -8.615850e-47 |
| Msa0715150 | Msa1172130 | -0.806969 | 6.353749e-50 | -8.615850e-47 |
| Msa0716420 | Msa1172130 | 0.834684 | 2.600047e-56 | -8.615850e-47 |
| Msa0720370 | Msa1172130 | -0.820541 | 6.494071e-53 | -8.615850e-47 |
| Msa0790170 | Msa1172130 | 0.810268 | 1.254340e-50 | -8.615850e-47 |
| Msa0791820 | Msa1172130 | -0.809547 | 1.793048e-50 | -8.615850e-47 |
| Msa0792090 | Msa1172130 | -0.825132 | 5.537705e-54 | -8.615850e-47 |
| Msa0799010 | Msa1172130 | 0.842682 | 2.226956e-58 | -8.615850e-47 |
| Msa0799060 | Msa1172130 | -0.808699 | 2.723854e-50 | -8.615850e-47 |
| Msa0820530 | Msa1172130 | 0.834904 | 2.288278e-56 | -8.615850e-47 |
| Msa0124550 | Msa1172130 | -0.813896 | 2.028992e-51 | -8.615850e-47 |
| Msa0130520 | Msa1172130 | -0.807228 | 5.601508e-50 | -8.615850e-47 |
| Msa0131450 | Msa1172130 | -0.814045 | 1.881518e-51 | -8.615850e-47 |
| Msa0137870 | Msa1172130 | -0.803927 | 2.759653e-49 | -8.615850e-47 |
| Msa0140400 | Msa1172130 | -0.819599 | 1.067055e-52 | -8.615850e-47 |
| Msa0140520 | Msa1172130 | 0.807374 | 5.216040e-50 | -8.615850e-47 |
| Msa0163560 | Msa1172130 | -0.809105 | 2.230511e-50 | -8.615850e-47 |
| Msa0171980 | Msa1172130 | -0.805416 | 1.348857e-49 | -8.615850e-47 |
| Msa0173330 | Msa1172130 | -0.860774 | 1.633248e-63 | -8.615850e-47 |
| Msa0175200 | Msa1172130 | -0.809156 | 2.175138e-50 | -8.615850e-47 |
| Msa0175290 | Msa1172130 | 0.850953 | 1.216157e-60 | -8.615850e-47 |
| Msa0176330 | Msa1172130 | -0.802420 | 5.657741e-49 | -8.615850e-47 |
| Msa0177270 | Msa1172130 | -0.812394 | 4.334802e-51 | -8.615850e-47 |
| Msa0194720 | Msa1172130 | -0.822709 | 2.049143e-53 | -8.615850e-47 |
| Msa0208810 | Msa1172130 | -0.807670 | 4.513680e-50 | -8.615850e-47 |
| Msa0212750 | Msa1172130 | 0.861440 | 1.024784e-63 | -8.615850e-47 |
| Msa0220080 | Msa1172130 | -0.820305 | 7.356154e-53 | -8.615850e-47 |
| Msa0223920 | Msa1172130 | -0.852766 | 3.722327e-61 | -8.615850e-47 |
| Msa0227310 | Msa1172130 | 0.844137 | 9.108224e-59 | -8.615850e-47 |
| Msa0229360 | Msa1172130 | -0.866529 | 2.667542e-65 | -8.615850e-47 |
| Msa0377530 | Msa1172130 | -0.816811 | 4.562437e-52 | -8.615850e-47 |
| Msa0381700 | Msa1172130 | -0.808940 | 2.418819e-50 | -8.615850e-47 |
| Msa0383350 | Msa1172130 | -0.800071 | 1.711404e-48 | -8.615850e-47 |
| Msa0387910 | Msa1172130 | -0.807996 | 3.847508e-50 | -8.615850e-47 |
| Msa0388030 | Msa1172130 | 0.810127 | 1.345323e-50 | -8.615850e-47 |
| Msa0403190 | Msa1172130 | -0.801983 | 6.959411e-49 | -8.615850e-47 |
| Msa0419640 | Msa1172130 | 0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0426810 | Msa1172130 | -0.828613 | 8.155941e-55 | -8.615850e-47 |
| Msa0436190 | Msa1172130 | -0.838091 | 3.534060e-57 | -8.615850e-47 |
| Msa0436200 | Msa1172130 | -0.813396 | 2.614107e-51 | -8.615850e-47 |
| Msa0462540 | Msa1172130 | -0.803802 | 2.930246e-49 | -8.615850e-47 |
| Msa0465920 | Msa1172130 | -0.820349 | 7.190622e-53 | -8.615850e-47 |
| Msa0465960 | Msa1172130 | -0.825836 | 3.772585e-54 | -8.615850e-47 |
| Msa0993240 | Msa1172130 | -0.851927 | 6.451574e-61 | -8.615850e-47 |
| Msa1002600 | Msa1172130 | 0.844811 | 5.999130e-59 | -8.615850e-47 |
| Msa1010460 | Msa1172130 | -0.836667 | 8.180167e-57 | -8.615850e-47 |
| Msa1033520 | Msa1172130 | -0.808273 | 3.358664e-50 | -8.615850e-47 |
| Msa1036740 | Msa1172130 | -0.809201 | 2.127015e-50 | -8.615850e-47 |
| Msa1036910 | Msa1172130 | -0.836676 | 8.137951e-57 | -8.615850e-47 |
| Msa1045450 | Msa1172130 | -0.815906 | 7.271112e-52 | -8.615850e-47 |
| Msa1048750 | Msa1172130 | 0.807294 | 5.422017e-50 | -8.615850e-47 |
| Msa1063700 | Msa1172130 | -0.811842 | 5.719939e-51 | -8.615850e-47 |
| Msa1073400 | Msa1172130 | -0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa1079620 | Msa1172130 | -0.838035 | 3.652014e-57 | -8.615850e-47 |
| Msa1084500 | Msa1172130 | 0.807756 | 4.325815e-50 | -8.615850e-47 |
| Msa1088290 | Msa1172130 | -0.802312 | 5.955964e-49 | -8.615850e-47 |
| Msa1089740 | Msa1172130 | 0.812270 | 4.612325e-51 | -8.615850e-47 |
| Msa1094540 | Msa1172130 | 0.802942 | 4.416258e-49 | -8.615850e-47 |
| Msa1098720 | Msa1172130 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
| Msa1100520 | Msa1172130 | 0.804277 | 2.334051e-49 | -8.615850e-47 |
| Msa0241740 | Msa1172130 | -0.808371 | 3.200522e-50 | -8.615850e-47 |
| Msa0252240 | Msa1172130 | -0.810756 | 9.841807e-51 | -8.615850e-47 |
| Msa0265160 | Msa1172130 | -0.876755 | 1.085274e-68 | -8.615850e-47 |
| Msa0266210 | Msa1172130 | -0.823496 | 1.342404e-53 | -8.615850e-47 |
| Msa0287670 | Msa1172130 | -0.827850 | 1.245895e-54 | -8.615850e-47 |
| Msa0295000 | Msa1172130 | 0.812560 | 3.986915e-51 | -8.615850e-47 |
| Msa0296350 | Msa1172130 | -0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0296980 | Msa1172130 | 0.831029 | 2.104386e-55 | -8.615850e-47 |
| Msa0303160 | Msa1172130 | -0.870476 | 1.417728e-66 | -8.615850e-47 |
| Msa0304840 | Msa1172130 | -0.824976 | 6.028596e-54 | -8.615850e-47 |
| Msa0335320 | Msa1172130 | 0.812888 | 3.380393e-51 | -8.615850e-47 |
| Msa0341230 | Msa1172130 | -0.808092 | 3.671167e-50 | -8.615850e-47 |
| Msa1113880 | Msa1172130 | -0.801394 | 9.194007e-49 | -8.615850e-47 |
| Msa1125790 | Msa1172130 | 0.837937 | 3.870754e-57 | -8.615850e-47 |
| Msa1126120 | Msa1172130 | 0.815860 | 7.445836e-52 | -8.615850e-47 |
| Msa1136790 | Msa1172130 | -0.815190 | 1.049695e-51 | -8.615850e-47 |
| Msa1160360 | Msa1172130 | -0.808651 | 2.789583e-50 | -8.615850e-47 |
| Msa1164020 | Msa1172130 | -0.845462 | 4.000519e-59 | -8.615850e-47 |
| Msa1172110 | Msa1172130 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa1172130 | Msa1174310 | -0.804471 | 2.126656e-49 | -8.615850e-47 |
| Msa1172130 | Msa1176360 | -0.802305 | 5.976624e-49 | -8.615850e-47 |
| Msa1172130 | Msa1176980 | -0.813228 | 2.847027e-51 | -8.615850e-47 |
| Msa1172130 | Msa1181170 | 0.801617 | 8.275905e-49 | -8.615850e-47 |
| Msa1172130 | Msa1182640 | -0.810833 | 9.467667e-51 | -8.615850e-47 |
| Msa1172130 | Msa1183770 | -0.812244 | 4.674040e-51 | -8.615850e-47 |
| Msa1172130 | Msa1198880 | -0.827972 | 1.164135e-54 | -8.615850e-47 |
| Msa1172130 | Msa1205850 | -0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa1172130 | Msa1207460 | 0.800928 | 1.145054e-48 | -8.615850e-47 |
| Msa1172130 | Msa1207730 | -0.802672 | 5.019448e-49 | -8.615850e-47 |
| Msa1172130 | Msa1229850 | -0.805619 | 1.223023e-49 | -8.615850e-47 |
| Msa1172130 | Msa1233950 | -0.827622 | 1.413169e-54 | -8.615850e-47 |
| Msa1172130 | Msa1236070 | 0.830560 | 2.741341e-55 | -8.615850e-47 |
| Msa1172130 | Msa1247590 | 0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa1172130 | Msa1253810 | -0.801545 | 8.561920e-49 | -8.615850e-47 |
| Msa1172130 | Msa1267260 | -0.809029 | 2.315967e-50 | -8.615850e-47 |
| Msa1172130 | Msa1267840 | -0.802716 | 4.915999e-49 | -8.615850e-47 |
| Msa1172130 | Msa1272520 | -0.821386 | 4.150770e-53 | -8.615850e-47 |
| Msa1172130 | Msa1280620 | -0.820861 | 5.484105e-53 | -8.615850e-47 |
| Msa1172130 | Msa1294960 | -0.807725 | 4.393779e-50 | -8.615850e-47 |
| Msa1172130 | Msa1296300 | -0.834603 | 2.724544e-56 | -8.615850e-47 |
| Msa1172130 | Msa1298550 | 0.981956 | 7.220422e-154 | -8.615850e-47 |
| Msa1172130 | Msa1310660 | -0.834937 | 2.245226e-56 | -8.615850e-47 |
| Msa1172130 | Msa1330890 | 0.981347 | 2.274100e-152 | -8.615850e-47 |
| Msa1172130 | Msa1331280 | -0.801479 | 8.829922e-49 | -8.615850e-47 |
| Msa1172130 | Msa1340830 | -0.810469 | 1.134819e-50 | -8.615850e-47 |
| Msa1172130 | Msa1350690 | -0.825872 | 3.698504e-54 | -8.615850e-47 |
| Msa1172130 | Msa1352540 | 0.802772 | 4.788209e-49 | -8.615850e-47 |
| Msa1172130 | Msa1363700 | -0.872857 | 2.304474e-67 | -8.615850e-47 |
| Msa1172130 | Msa1364060 | -0.837852 | 4.068952e-57 | -8.615850e-47 |
| Msa1172130 | Msa1365860 | -0.814667 | 1.370851e-51 | -8.615850e-47 |
| Msa1172130 | Msa1371090 | -0.849826 | 2.519724e-60 | -8.615850e-47 |
| Msa1172130 | Msa1371240 | -0.818516 | 1.881914e-52 | -8.615850e-47 |
| Msa1172130 | Msa1383350 | -0.817011 | 4.113788e-52 | -8.615850e-47 |
| Msa1172130 | Msa1393800 | -0.811802 | 5.835003e-51 | -8.615850e-47 |
| Msa1172130 | Msa1396940 | -0.802549 | 5.322415e-49 | -8.615850e-47 |
| Msa1172130 | Msa1398170 | -0.811768 | 5.935291e-51 | -8.615850e-47 |
| Msa1172130 | Msa1422840 | -0.809371 | 1.955973e-50 | -8.615850e-47 |
| Msa1172130 | Msa1422910 | -0.812297 | 4.551415e-51 | -8.615850e-47 |
| Msa1172130 | Msa1426920 | -0.814340 | 1.619693e-51 | -8.615850e-47 |
| Msa1172130 | Msa1438450 | -0.834065 | 3.716711e-56 | -8.615850e-47 |
| Msa1172130 | Msa1443610 | -0.828837 | 7.201212e-55 | -8.615850e-47 |
| Msa1172130 | Msa1445400 | 0.803576 | 3.263180e-49 | -8.615850e-47 |
| Msa1172130 | Msa1449350 | 0.801738 | 7.816467e-49 | -8.615850e-47 |
| Msa1172130 | Msa1459760 | 0.801489 | 8.788079e-49 | -8.615850e-47 |
| Msa0505060 | Msa1172130 | -0.827153 | 1.830599e-54 | -8.615850e-47 |
| Msa0506940 | Msa1172130 | -0.809962 | 1.460117e-50 | -8.615850e-47 |
| Msa0513440 | Msa1172130 | -0.802221 | 6.217541e-49 | -8.615850e-47 |
| Msa0517490 | Msa1172130 | -0.803369 | 3.601914e-49 | -8.615850e-47 |
| Msa0524590 | Msa1172130 | -0.813686 | 2.257412e-51 | -8.615850e-47 |
| Msa0524600 | Msa1172130 | -0.836160 | 1.101299e-56 | -8.615850e-47 |
| Msa0533960 | Msa1172130 | 0.821515 | 3.875992e-53 | -8.615850e-47 |
| Msa0534410 | Msa1172130 | -0.859105 | 5.207391e-63 | -8.615850e-47 |
| Msa0537770 | Msa1172130 | -0.803988 | 2.680708e-49 | -8.615850e-47 |
| Msa0545290 | Msa1172130 | -0.810915 | 9.092285e-51 | -8.615850e-47 |
| Msa0550570 | Msa1172130 | -0.808134 | 3.595547e-50 | -8.615850e-47 |
| Msa0555400 | Msa1172130 | -0.813602 | 2.356037e-51 | -8.615850e-47 |
| Msa0557950 | Msa1172130 | 0.814718 | 1.336080e-51 | -8.615850e-47 |
| Msa0573040 | Msa1172130 | -0.810697 | 1.013135e-50 | -8.615850e-47 |
| Msa0579370 | Msa1172130 | -0.800655 | 1.301760e-48 | -8.615850e-47 |
| Msa0582280 | Msa1172130 | -0.828506 | 8.656346e-55 | -8.615850e-47 |
| Msa0585620 | Msa1172130 | 0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa0590650 | Msa1172130 | -0.832160 | 1.107505e-55 | -8.615850e-47 |
| Msa0600890 | Msa1172130 | -0.817032 | 4.069285e-52 | -8.615850e-47 |
| Msa0602370 | Msa1172130 | -0.800954 | 1.130896e-48 | -8.615850e-47 |
| Msa0879860 | Msa1172130 | -0.820433 | 6.877440e-53 | -8.615850e-47 |
| Msa0924150 | Msa1172130 | 0.839957 | 1.161063e-57 | -8.615850e-47 |
| Msa0925840 | Msa1172130 | -0.802994 | 4.306473e-49 | -8.615850e-47 |
| Msa0929960 | Msa1172130 | 0.815738 | 7.927812e-52 | -8.615850e-47 |
| Msa0943270 | Msa1172130 | -0.805836 | 1.101312e-49 | -8.615850e-47 |
| Msa0944730 | Msa1172130 | -0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0945100 | Msa1172130 | -0.836952 | 6.922119e-57 | -8.615850e-47 |
| Msa0945120 | Msa1172130 | -0.826931 | 2.069204e-54 | -8.615850e-47 |
| Msa0963090 | Msa1172130 | 0.812299 | 4.545656e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172130 | MtrunA17_Chr4g0059241 | 97.191 | 178 | 5 | 0 | 1 | 178 | 1 | 178 | 4.82e-125 | 349 |
| Msa1172130 | MtrunA17_Chr4g0040671 | 94.949 | 99 | 5 | 0 | 1 | 99 | 1 | 99 | 1.38e-63 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172130 | AT1G24450.1 | 57.047 | 149 | 64 | 0 | 30 | 178 | 42 | 190 | 4.73e-57 | 177 |
Find 70 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATTCACCTTGTTATT+TGG | 0.076005 | 8_1:+2003208 | Msa1172130:five_prime_UTR |
| GGGCAAACCCTAGTTGTTTC+TGG | 0.221287 | 8_1:-2003518 | None:intergenic |
| ACCAATTCACCTTGTTATTT+GGG | 0.247352 | 8_1:+2003209 | Msa1172130:five_prime_UTR |
| CAAGTTCACAGACAAGTAAA+AGG | 0.271671 | 8_1:+2003238 | Msa1172130:five_prime_UTR |
| TAACAAGGTGAATTGGTTAT+AGG | 0.279800 | 8_1:-2003203 | None:intergenic |
| ACTGTTCATGGTCGTGATCT+TGG | 0.284490 | 8_1:+2004019 | Msa1172130:CDS |
| TAATTAACTTAGGGTATGTT+TGG | 0.308800 | 8_1:+2004158 | Msa1172130:three_prime_UTR |
| GGTGCTATTTCTCTTGATAC+TGG | 0.322054 | 8_1:+2003965 | Msa1172130:CDS |
| CTGTTCATGGTCGTGATCTT+GGG | 0.329301 | 8_1:+2004020 | Msa1172130:CDS |
| CAAGCGACGGTTCAACTCTT+TGG | 0.330495 | 8_1:-2003807 | None:intergenic |
| TGCCGTTGATGCAATGCGTT+TGG | 0.351005 | 8_1:+2003859 | Msa1172130:CDS |
| TCCCCATGCTACCATCGTTC+AGG | 0.352766 | 8_1:+2003368 | Msa1172130:CDS |
| AACAAGGTGAATTGGTTATA+GGG | 0.357540 | 8_1:-2003202 | None:intergenic |
| ATGAGTCGACATTGGAGATT+AGG | 0.358387 | 8_1:-2003832 | None:intergenic |
| TTCTCTTGATACTGGTAGTT+CGG | 0.366585 | 8_1:+2003973 | Msa1172130:CDS |
| TTAGTTAATCTAATTAACTT+AGG | 0.370936 | 8_1:+2004148 | Msa1172130:three_prime_UTR |
| CCCCAAATAACAAGGTGAAT+TGG | 0.371013 | 8_1:-2003210 | None:intergenic |
| TCTTCCACTGCTGTGGTTTG+TGG | 0.372837 | 8_1:+2003923 | Msa1172130:CDS |
| GTTTCGAGGGCGGATGAAAA+TGG | 0.383610 | 8_1:-2003492 | None:intergenic |
| CACAGCAGTGGAAGAAGAAT+TGG | 0.384003 | 8_1:-2003915 | None:intergenic |
| GAAAGCTTTGTTGTTCTCTT+CGG | 0.417815 | 8_1:-2003711 | None:intergenic |
| GTGAATTGGTTATAGGGAAA+TGG | 0.428756 | 8_1:-2003196 | None:intergenic |
| TGAGTCGACATTGGAGATTA+GGG | 0.444608 | 8_1:-2003831 | None:intergenic |
| CAATTCTTCTTCCACTGCTG+TGG | 0.459397 | 8_1:+2003916 | Msa1172130:CDS |
| TAGTTAATCTAATTAACTTA+GGG | 0.460003 | 8_1:+2004149 | Msa1172130:three_prime_UTR |
| GCCGTTGATGCAATGCGTTT+GGG | 0.462426 | 8_1:+2003860 | Msa1172130:CDS |
| GTTGTTTCTGGAGGGTTTCG+AGG | 0.471552 | 8_1:-2003506 | None:intergenic |
| AAGTTCACAGACAAGTAAAA+GGG | 0.478906 | 8_1:+2003239 | Msa1172130:five_prime_UTR |
| ACCCAAACGCATTGCATCAA+CGG | 0.482026 | 8_1:-2003861 | None:intergenic |
| AGTGGAAGAAGAATTGGTCT+TGG | 0.487457 | 8_1:-2003909 | None:intergenic |
| GTGGAAGAAGAATTGGTCTT+GGG | 0.501015 | 8_1:-2003908 | None:intergenic |
| CAAACCCTAGTTGTTTCTGG+AGG | 0.510081 | 8_1:-2003515 | None:intergenic |
| TTGTTTCTGGAGGGTTTCGA+GGG | 0.515270 | 8_1:-2003505 | None:intergenic |
| GAAACCCTCCAGAAACAACT+AGG | 0.522143 | 8_1:+2003510 | Msa1172130:CDS |
| TACTGGTAGTTCGGAGTCTG+CGG | 0.528726 | 8_1:+2003982 | Msa1172130:CDS |
| AACCTGAACGATGGTAGCAT+GGG | 0.530303 | 8_1:-2003370 | None:intergenic |
| AAACCCTAGTTGTTTCTGGA+GGG | 0.539563 | 8_1:-2003514 | None:intergenic |
| ACCCCTTCAAACAGTCTCAC+AGG | 0.540513 | 8_1:-2004206 | None:intergenic |
| AAACCTGAACGATGGTAGCA+TGG | 0.544111 | 8_1:-2003371 | None:intergenic |
| TACCTGTGAGACTGTTTGAA+GGG | 0.550478 | 8_1:+2004204 | Msa1172130:three_prime_UTR |
| GTACCTGTGAGACTGTTTGA+AGG | 0.554837 | 8_1:+2004203 | Msa1172130:three_prime_UTR |
| CTCTTCGGAGAAAGAAGCGT+GGG | 0.560654 | 8_1:-2003696 | None:intergenic |
| TTTCTGGAGGGTTTCGAGGG+CGG | 0.561747 | 8_1:-2003502 | None:intergenic |
| TCTTCAAAATGAAACAAACA+TGG | 0.566640 | 8_1:-2004083 | None:intergenic |
| GCGACGGTTCAACTCTTTGG+CGG | 0.570405 | 8_1:-2003804 | None:intergenic |
| CCAATTCACCTTGTTATTTG+GGG | 0.571549 | 8_1:+2003210 | Msa1172130:five_prime_UTR |
| AAGGATCGCAATGAGGAAGA+TGG | 0.572481 | 8_1:-2003346 | None:intergenic |
| TACGCTGCTATGTGAAATGT+AGG | 0.575316 | 8_1:+2004046 | Msa1172130:exon |
| ACTGGTAGTTCGGAGTCTGC+GGG | 0.579104 | 8_1:+2003983 | Msa1172130:CDS |
| TGTTCATGGTCGTGATCTTG+GGG | 0.587592 | 8_1:+2004021 | Msa1172130:CDS |
| GGCACAAGATGAGTCGACAT+TGG | 0.593448 | 8_1:-2003840 | None:intergenic |
| AGCACCACAAACCACAGCAG+TGG | 0.604051 | 8_1:-2003927 | None:intergenic |
| GAAGATGGTGAAGACGATGA+AGG | 0.605415 | 8_1:-2003331 | None:intergenic |
| ACCTGTGAGACTGTTTGAAG+GGG | 0.609777 | 8_1:+2004205 | Msa1172130:three_prime_UTR |
| GAACGATGGTAGCATGGGGA+AGG | 0.610380 | 8_1:-2003365 | None:intergenic |
| AAACAAACATGGGTACTGAA+AGG | 0.611119 | 8_1:-2004072 | None:intergenic |
| GCGTTTGGGTTTGCACAAGG+TGG | 0.620407 | 8_1:+2003874 | Msa1172130:CDS |
| GGTTATAGGGAAATGGAAGG+AGG | 0.628587 | 8_1:-2003189 | None:intergenic |
| TTGGTTATCCCCAAATAACA+AGG | 0.629002 | 8_1:-2003218 | None:intergenic |
| AATGCGTTTGGGTTTGCACA+AGG | 0.636231 | 8_1:+2003871 | Msa1172130:CDS |
| AAACCCTCCAGAAACAACTA+GGG | 0.642154 | 8_1:+2003511 | Msa1172130:CDS |
| ATTGGTTATAGGGAAATGGA+AGG | 0.645859 | 8_1:-2003192 | None:intergenic |
| CATGGGGAAGGATCGCAATG+AGG | 0.653551 | 8_1:-2003353 | None:intergenic |
| GAAGACGATGAAGGTACGAG+TGG | 0.655609 | 8_1:-2003322 | None:intergenic |
| CTTCAAAATGAAACAAACAT+GGG | 0.663181 | 8_1:-2004082 | None:intergenic |
| AGTTCACAGACAAGTAAAAG+GGG | 0.666189 | 8_1:+2003240 | Msa1172130:five_prime_UTR |
| TGGAGATTAGGGACAAGCGA+CGG | 0.678870 | 8_1:-2003820 | None:intergenic |
| ACCTGAACGATGGTAGCATG+GGG | 0.683989 | 8_1:-2003369 | None:intergenic |
| GGAAAAGGAAACCTGAACGA+TGG | 0.688820 | 8_1:-2003379 | None:intergenic |
| TCTCTTCGGAGAAAGAAGCG+TGG | 0.707050 | 8_1:-2003697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGACCAAATT+CGG | + | chr8_1:2003593-2003612 | Msa1172130:intron | 15.0% |
| !! | TTAGTTAATCTAATTAACTT+AGG | + | chr8_1:2004148-2004167 | Msa1172130:three_prime_UTR | 15.0% |
| !! | TAGTTAATCTAATTAACTTA+GGG | + | chr8_1:2004149-2004168 | Msa1172130:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTTTGACCAAATT+CGG | + | chr8_1:2003593-2003612 | Msa1172130:intron | 15.0% |
| !! | TTAGTTAATCTAATTAACTT+AGG | + | chr8_1:2004148-2004167 | Msa1172130:three_prime_UTR | 15.0% |
| !! | TAGTTAATCTAATTAACTTA+GGG | + | chr8_1:2004149-2004168 | Msa1172130:three_prime_UTR | 15.0% |
| !!! | ATGAAAACTGTTTCTATTAA+TGG | - | chr8_1:2003440-2003459 | None:intergenic | 20.0% |
| !! | TAGAATAAAATGAAAAGAGA+GGG | - | chr8_1:2003563-2003582 | None:intergenic | 20.0% |
| !! | ATAGAATAAAATGAAAAGAG+AGG | - | chr8_1:2003564-2003583 | None:intergenic | 20.0% |
| !! | TTAACAAATTAAACCGAATT+TGG | - | chr8_1:2003609-2003628 | None:intergenic | 20.0% |
| !! | ATATTCTTCTTTATAGAAAG+AGG | - | chr8_1:2003160-2003179 | None:intergenic | 20.0% |
| !!! | ATGAAAACTGTTTCTATTAA+TGG | - | chr8_1:2003440-2003459 | None:intergenic | 20.0% |
| !! | TAGAATAAAATGAAAAGAGA+GGG | - | chr8_1:2003563-2003582 | None:intergenic | 20.0% |
| !! | ATAGAATAAAATGAAAAGAG+AGG | - | chr8_1:2003564-2003583 | None:intergenic | 20.0% |
| !! | TTAACAAATTAAACCGAATT+TGG | - | chr8_1:2003609-2003628 | None:intergenic | 20.0% |
| !!! | TTAATGGATTGTTTCGATTT+TGG | - | chr8_1:2003424-2003443 | None:intergenic | 25.0% |
| ! | CTTCAAAATGAAACAAACAT+GGG | - | chr8_1:2004085-2004104 | None:intergenic | 25.0% |
| ! | TCTTCAAAATGAAACAAACA+TGG | - | chr8_1:2004086-2004105 | None:intergenic | 25.0% |
| ! | TAATTAACTTAGGGTATGTT+TGG | + | chr8_1:2004158-2004177 | Msa1172130:three_prime_UTR | 25.0% |
| !!! | TTAATGGATTGTTTCGATTT+TGG | - | chr8_1:2003424-2003443 | None:intergenic | 25.0% |
| ! | CTTCAAAATGAAACAAACAT+GGG | - | chr8_1:2004085-2004104 | None:intergenic | 25.0% |
| ! | TCTTCAAAATGAAACAAACA+TGG | - | chr8_1:2004086-2004105 | None:intergenic | 25.0% |
| ! | TAATTAACTTAGGGTATGTT+TGG | + | chr8_1:2004158-2004177 | Msa1172130:three_prime_UTR | 25.0% |
| AACAAGGTGAATTGGTTATA+GGG | - | chr8_1:2003205-2003224 | None:intergenic | 30.0% | |
| TAACAAGGTGAATTGGTTAT+AGG | - | chr8_1:2003206-2003225 | None:intergenic | 30.0% | |
| !! | AACCAATTCACCTTGTTATT+TGG | + | chr8_1:2003208-2003227 | Msa1172130:five_prime_UTR | 30.0% |
| !! | ACCAATTCACCTTGTTATTT+GGG | + | chr8_1:2003209-2003228 | Msa1172130:five_prime_UTR | 30.0% |
| AAGTTCACAGACAAGTAAAA+GGG | + | chr8_1:2003239-2003258 | Msa1172130:five_prime_UTR | 30.0% | |
| AAATAAGAGAGAAAGGGAAA+AGG | - | chr8_1:2003397-2003416 | None:intergenic | 30.0% | |
| GGAGAAAAATAAGAGAGAAA+GGG | - | chr8_1:2003403-2003422 | None:intergenic | 30.0% | |
| TGGAGAAAAATAAGAGAGAA+AGG | - | chr8_1:2003404-2003423 | None:intergenic | 30.0% | |
| TTCATTAATCTTGTACTTGC+AGG | + | chr8_1:2003455-2003474 | Msa1172130:intron | 30.0% | |
| TCATTAATCTTGTACTTGCA+GGG | + | chr8_1:2003456-2003475 | Msa1172130:intron | 30.0% | |
| ATGTGTATTACATGATGATC+AGG | + | chr8_1:2003633-2003652 | Msa1172130:intron | 30.0% | |
| ! | AACAAAGCTTTCAGCATTTT+AGG | + | chr8_1:2003722-2003741 | Msa1172130:CDS | 30.0% |
| ! | AATGTTTTCTTGACTGTTCA+TGG | + | chr8_1:2004007-2004026 | Msa1172130:CDS | 30.0% |
| AACAAGGTGAATTGGTTATA+GGG | - | chr8_1:2003205-2003224 | None:intergenic | 30.0% | |
| TAACAAGGTGAATTGGTTAT+AGG | - | chr8_1:2003206-2003225 | None:intergenic | 30.0% | |
| !! | AACCAATTCACCTTGTTATT+TGG | + | chr8_1:2003208-2003227 | Msa1172130:five_prime_UTR | 30.0% |
| !! | ACCAATTCACCTTGTTATTT+GGG | + | chr8_1:2003209-2003228 | Msa1172130:five_prime_UTR | 30.0% |
| AAGTTCACAGACAAGTAAAA+GGG | + | chr8_1:2003239-2003258 | Msa1172130:five_prime_UTR | 30.0% | |
| AAATAAGAGAGAAAGGGAAA+AGG | - | chr8_1:2003397-2003416 | None:intergenic | 30.0% | |
| GGAGAAAAATAAGAGAGAAA+GGG | - | chr8_1:2003403-2003422 | None:intergenic | 30.0% | |
| TGGAGAAAAATAAGAGAGAA+AGG | - | chr8_1:2003404-2003423 | None:intergenic | 30.0% | |
| TTCATTAATCTTGTACTTGC+AGG | + | chr8_1:2003455-2003474 | Msa1172130:intron | 30.0% | |
| TCATTAATCTTGTACTTGCA+GGG | + | chr8_1:2003456-2003475 | Msa1172130:intron | 30.0% | |
| ATGTGTATTACATGATGATC+AGG | + | chr8_1:2003633-2003652 | Msa1172130:intron | 30.0% | |
| ! | AACAAAGCTTTCAGCATTTT+AGG | + | chr8_1:2003722-2003741 | Msa1172130:CDS | 30.0% |
| ! | AATGTTTTCTTGACTGTTCA+TGG | + | chr8_1:2004007-2004026 | Msa1172130:CDS | 30.0% |
| ATTGGTTATAGGGAAATGGA+AGG | - | chr8_1:2003195-2003214 | None:intergenic | 35.0% | |
| GTGAATTGGTTATAGGGAAA+TGG | - | chr8_1:2003199-2003218 | None:intergenic | 35.0% | |
| !! | CCAATTCACCTTGTTATTTG+GGG | + | chr8_1:2003210-2003229 | Msa1172130:five_prime_UTR | 35.0% |
| TTGGTTATCCCCAAATAACA+AGG | - | chr8_1:2003221-2003240 | None:intergenic | 35.0% | |
| ! | CTTTTACTTGTCTGTGAACT+TGG | - | chr8_1:2003240-2003259 | None:intergenic | 35.0% |
| CAAGTTCACAGACAAGTAAA+AGG | + | chr8_1:2003238-2003257 | Msa1172130:five_prime_UTR | 35.0% | |
| AGTTCACAGACAAGTAAAAG+GGG | + | chr8_1:2003240-2003259 | Msa1172130:five_prime_UTR | 35.0% | |
| GTTTCTGAATAAAAGGACAG+GGG | - | chr8_1:2003541-2003560 | None:intergenic | 35.0% | |
| GGTTTCTGAATAAAAGGACA+GGG | - | chr8_1:2003542-2003561 | None:intergenic | 35.0% | |
| AGAGAGGGTTTCTGAATAAA+AGG | - | chr8_1:2003548-2003567 | None:intergenic | 35.0% | |
| !! | GAAAGCTTTGTTGTTCTCTT+CGG | - | chr8_1:2003714-2003733 | None:intergenic | 35.0% |
| ! | GGTGCTTTTCGATCAATTTT+TGG | + | chr8_1:2003944-2003963 | Msa1172130:CDS | 35.0% |
| TTCTCTTGATACTGGTAGTT+CGG | + | chr8_1:2003973-2003992 | Msa1172130:CDS | 35.0% | |
| !! | AAACAAACATGGGTACTGAA+AGG | - | chr8_1:2004075-2004094 | None:intergenic | 35.0% |
| ATTGGTTATAGGGAAATGGA+AGG | - | chr8_1:2003195-2003214 | None:intergenic | 35.0% | |
| GTGAATTGGTTATAGGGAAA+TGG | - | chr8_1:2003199-2003218 | None:intergenic | 35.0% | |
| !! | CCAATTCACCTTGTTATTTG+GGG | + | chr8_1:2003210-2003229 | Msa1172130:five_prime_UTR | 35.0% |
| TTGGTTATCCCCAAATAACA+AGG | - | chr8_1:2003221-2003240 | None:intergenic | 35.0% | |
| ! | CTTTTACTTGTCTGTGAACT+TGG | - | chr8_1:2003240-2003259 | None:intergenic | 35.0% |
| CAAGTTCACAGACAAGTAAA+AGG | + | chr8_1:2003238-2003257 | Msa1172130:five_prime_UTR | 35.0% | |
| AGTTCACAGACAAGTAAAAG+GGG | + | chr8_1:2003240-2003259 | Msa1172130:five_prime_UTR | 35.0% | |
| GTTTCTGAATAAAAGGACAG+GGG | - | chr8_1:2003541-2003560 | None:intergenic | 35.0% | |
| GGTTTCTGAATAAAAGGACA+GGG | - | chr8_1:2003542-2003561 | None:intergenic | 35.0% | |
| AGAGAGGGTTTCTGAATAAA+AGG | - | chr8_1:2003548-2003567 | None:intergenic | 35.0% | |
| !! | GAAAGCTTTGTTGTTCTCTT+CGG | - | chr8_1:2003714-2003733 | None:intergenic | 35.0% |
| ! | GGTGCTTTTCGATCAATTTT+TGG | + | chr8_1:2003944-2003963 | Msa1172130:CDS | 35.0% |
| TTCTCTTGATACTGGTAGTT+CGG | + | chr8_1:2003973-2003992 | Msa1172130:CDS | 35.0% | |
| !! | AAACAAACATGGGTACTGAA+AGG | - | chr8_1:2004075-2004094 | None:intergenic | 35.0% |
| CCCCAAATAACAAGGTGAAT+TGG | - | chr8_1:2003213-2003232 | None:intergenic | 40.0% | |
| ! | GGATTGCATTTTGAACGGAA+CGG | - | chr8_1:2003304-2003323 | None:intergenic | 40.0% |
| !!! | CGAGTGGATTGCATTTTGAA+CGG | - | chr8_1:2003309-2003328 | None:intergenic | 40.0% |
| AAACCCTCCAGAAACAACTA+GGG | + | chr8_1:2003511-2003530 | Msa1172130:CDS | 40.0% | |
| !! | AAACCCTAGTTGTTTCTGGA+GGG | - | chr8_1:2003517-2003536 | None:intergenic | 40.0% |
| GGGTTTCTGAATAAAAGGAC+AGG | - | chr8_1:2003543-2003562 | None:intergenic | 40.0% | |
| TGAGTCGACATTGGAGATTA+GGG | - | chr8_1:2003834-2003853 | None:intergenic | 40.0% | |
| ATGAGTCGACATTGGAGATT+AGG | - | chr8_1:2003835-2003854 | None:intergenic | 40.0% | |
| !! | GTGGAAGAAGAATTGGTCTT+GGG | - | chr8_1:2003911-2003930 | None:intergenic | 40.0% |
| ! | AGTGGAAGAAGAATTGGTCT+TGG | - | chr8_1:2003912-2003931 | None:intergenic | 40.0% |
| !! | GGTGCTATTTCTCTTGATAC+TGG | + | chr8_1:2003965-2003984 | Msa1172130:CDS | 40.0% |
| TACGCTGCTATGTGAAATGT+AGG | + | chr8_1:2004046-2004065 | Msa1172130:exon | 40.0% | |
| TACCTGTGAGACTGTTTGAA+GGG | + | chr8_1:2004204-2004223 | Msa1172130:three_prime_UTR | 40.0% | |
| CCCCAAATAACAAGGTGAAT+TGG | - | chr8_1:2003213-2003232 | None:intergenic | 40.0% | |
| ! | GGATTGCATTTTGAACGGAA+CGG | - | chr8_1:2003304-2003323 | None:intergenic | 40.0% |
| !!! | CGAGTGGATTGCATTTTGAA+CGG | - | chr8_1:2003309-2003328 | None:intergenic | 40.0% |
| AAACCCTCCAGAAACAACTA+GGG | + | chr8_1:2003511-2003530 | Msa1172130:CDS | 40.0% | |
| !! | AAACCCTAGTTGTTTCTGGA+GGG | - | chr8_1:2003517-2003536 | None:intergenic | 40.0% |
| GGGTTTCTGAATAAAAGGAC+AGG | - | chr8_1:2003543-2003562 | None:intergenic | 40.0% | |
| TGAGTCGACATTGGAGATTA+GGG | - | chr8_1:2003834-2003853 | None:intergenic | 40.0% | |
| ATGAGTCGACATTGGAGATT+AGG | - | chr8_1:2003835-2003854 | None:intergenic | 40.0% | |
| !! | GTGGAAGAAGAATTGGTCTT+GGG | - | chr8_1:2003911-2003930 | None:intergenic | 40.0% |
| ! | AGTGGAAGAAGAATTGGTCT+TGG | - | chr8_1:2003912-2003931 | None:intergenic | 40.0% |
| !! | GGTGCTATTTCTCTTGATAC+TGG | + | chr8_1:2003965-2003984 | Msa1172130:CDS | 40.0% |
| TACGCTGCTATGTGAAATGT+AGG | + | chr8_1:2004046-2004065 | Msa1172130:exon | 40.0% | |
| TACCTGTGAGACTGTTTGAA+GGG | + | chr8_1:2004204-2004223 | Msa1172130:three_prime_UTR | 40.0% | |
| GGTTATAGGGAAATGGAAGG+AGG | - | chr8_1:2003192-2003211 | None:intergenic | 45.0% | |
| ! | GCATTTTGAACGGAACGGAA+CGG | - | chr8_1:2003299-2003318 | None:intergenic | 45.0% |
| GAAGATGGTGAAGACGATGA+AGG | - | chr8_1:2003334-2003353 | None:intergenic | 45.0% | |
| AAGGATCGCAATGAGGAAGA+TGG | - | chr8_1:2003349-2003368 | None:intergenic | 45.0% | |
| AACCTGAACGATGGTAGCAT+GGG | - | chr8_1:2003373-2003392 | None:intergenic | 45.0% | |
| AAACCTGAACGATGGTAGCA+TGG | - | chr8_1:2003374-2003393 | None:intergenic | 45.0% | |
| GGAAAAGGAAACCTGAACGA+TGG | - | chr8_1:2003382-2003401 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGGAGGGTTTCGA+GGG | - | chr8_1:2003508-2003527 | None:intergenic | 45.0% |
| GAAACCCTCCAGAAACAACT+AGG | + | chr8_1:2003510-2003529 | Msa1172130:CDS | 45.0% | |
| !! | CAAACCCTAGTTGTTTCTGG+AGG | - | chr8_1:2003518-2003537 | None:intergenic | 45.0% |
| ACCCAAACGCATTGCATCAA+CGG | - | chr8_1:2003864-2003883 | None:intergenic | 45.0% | |
| ! | AATGCGTTTGGGTTTGCACA+AGG | + | chr8_1:2003871-2003890 | Msa1172130:CDS | 45.0% |
| CACAGCAGTGGAAGAAGAAT+TGG | - | chr8_1:2003918-2003937 | None:intergenic | 45.0% | |
| CAATTCTTCTTCCACTGCTG+TGG | + | chr8_1:2003916-2003935 | Msa1172130:CDS | 45.0% | |
| ACTGTTCATGGTCGTGATCT+TGG | + | chr8_1:2004019-2004038 | Msa1172130:CDS | 45.0% | |
| CTGTTCATGGTCGTGATCTT+GGG | + | chr8_1:2004020-2004039 | Msa1172130:CDS | 45.0% | |
| TGTTCATGGTCGTGATCTTG+GGG | + | chr8_1:2004021-2004040 | Msa1172130:CDS | 45.0% | |
| GTACCTGTGAGACTGTTTGA+AGG | + | chr8_1:2004203-2004222 | Msa1172130:three_prime_UTR | 45.0% | |
| ACCTGTGAGACTGTTTGAAG+GGG | + | chr8_1:2004205-2004224 | Msa1172130:three_prime_UTR | 45.0% | |
| GGTTATAGGGAAATGGAAGG+AGG | - | chr8_1:2003192-2003211 | None:intergenic | 45.0% | |
| ! | GCATTTTGAACGGAACGGAA+CGG | - | chr8_1:2003299-2003318 | None:intergenic | 45.0% |
| GAAGATGGTGAAGACGATGA+AGG | - | chr8_1:2003334-2003353 | None:intergenic | 45.0% | |
| AAGGATCGCAATGAGGAAGA+TGG | - | chr8_1:2003349-2003368 | None:intergenic | 45.0% | |
| AACCTGAACGATGGTAGCAT+GGG | - | chr8_1:2003373-2003392 | None:intergenic | 45.0% | |
| AAACCTGAACGATGGTAGCA+TGG | - | chr8_1:2003374-2003393 | None:intergenic | 45.0% | |
| GGAAAAGGAAACCTGAACGA+TGG | - | chr8_1:2003382-2003401 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGGAGGGTTTCGA+GGG | - | chr8_1:2003508-2003527 | None:intergenic | 45.0% |
| GAAACCCTCCAGAAACAACT+AGG | + | chr8_1:2003510-2003529 | Msa1172130:CDS | 45.0% | |
| !! | CAAACCCTAGTTGTTTCTGG+AGG | - | chr8_1:2003518-2003537 | None:intergenic | 45.0% |
| ACCCAAACGCATTGCATCAA+CGG | - | chr8_1:2003864-2003883 | None:intergenic | 45.0% | |
| ! | AATGCGTTTGGGTTTGCACA+AGG | + | chr8_1:2003871-2003890 | Msa1172130:CDS | 45.0% |
| CACAGCAGTGGAAGAAGAAT+TGG | - | chr8_1:2003918-2003937 | None:intergenic | 45.0% | |
| CAATTCTTCTTCCACTGCTG+TGG | + | chr8_1:2003916-2003935 | Msa1172130:CDS | 45.0% | |
| ACTGTTCATGGTCGTGATCT+TGG | + | chr8_1:2004019-2004038 | Msa1172130:CDS | 45.0% | |
| CTGTTCATGGTCGTGATCTT+GGG | + | chr8_1:2004020-2004039 | Msa1172130:CDS | 45.0% | |
| TGTTCATGGTCGTGATCTTG+GGG | + | chr8_1:2004021-2004040 | Msa1172130:CDS | 45.0% | |
| GTACCTGTGAGACTGTTTGA+AGG | + | chr8_1:2004203-2004222 | Msa1172130:three_prime_UTR | 45.0% | |
| ACCTGTGAGACTGTTTGAAG+GGG | + | chr8_1:2004205-2004224 | Msa1172130:three_prime_UTR | 45.0% | |
| ! | GAAGACGATGAAGGTACGAG+TGG | - | chr8_1:2003325-2003344 | None:intergenic | 50.0% |
| ACCTGAACGATGGTAGCATG+GGG | - | chr8_1:2003372-2003391 | None:intergenic | 50.0% | |
| GTTTCGAGGGCGGATGAAAA+TGG | - | chr8_1:2003495-2003514 | None:intergenic | 50.0% | |
| !! | GTTGTTTCTGGAGGGTTTCG+AGG | - | chr8_1:2003509-2003528 | None:intergenic | 50.0% |
| ! | GGGCAAACCCTAGTTGTTTC+TGG | - | chr8_1:2003521-2003540 | None:intergenic | 50.0% |
| ! | CTCTTCGGAGAAAGAAGCGT+GGG | - | chr8_1:2003699-2003718 | None:intergenic | 50.0% |
| TCTCTTCGGAGAAAGAAGCG+TGG | - | chr8_1:2003700-2003719 | None:intergenic | 50.0% | |
| CAAGCGACGGTTCAACTCTT+TGG | - | chr8_1:2003810-2003829 | None:intergenic | 50.0% | |
| TGGAGATTAGGGACAAGCGA+CGG | - | chr8_1:2003823-2003842 | None:intergenic | 50.0% | |
| GGCACAAGATGAGTCGACAT+TGG | - | chr8_1:2003843-2003862 | None:intergenic | 50.0% | |
| TGCCGTTGATGCAATGCGTT+TGG | + | chr8_1:2003859-2003878 | Msa1172130:CDS | 50.0% | |
| GCCGTTGATGCAATGCGTTT+GGG | + | chr8_1:2003860-2003879 | Msa1172130:CDS | 50.0% | |
| TCTTCCACTGCTGTGGTTTG+TGG | + | chr8_1:2003923-2003942 | Msa1172130:CDS | 50.0% | |
| TACTGGTAGTTCGGAGTCTG+CGG | + | chr8_1:2003982-2004001 | Msa1172130:CDS | 50.0% | |
| ACCCCTTCAAACAGTCTCAC+AGG | - | chr8_1:2004209-2004228 | None:intergenic | 50.0% | |
| ! | GAAGACGATGAAGGTACGAG+TGG | - | chr8_1:2003325-2003344 | None:intergenic | 50.0% |
| ACCTGAACGATGGTAGCATG+GGG | - | chr8_1:2003372-2003391 | None:intergenic | 50.0% | |
| GTTTCGAGGGCGGATGAAAA+TGG | - | chr8_1:2003495-2003514 | None:intergenic | 50.0% | |
| !! | GTTGTTTCTGGAGGGTTTCG+AGG | - | chr8_1:2003509-2003528 | None:intergenic | 50.0% |
| ! | GGGCAAACCCTAGTTGTTTC+TGG | - | chr8_1:2003521-2003540 | None:intergenic | 50.0% |
| ! | CTCTTCGGAGAAAGAAGCGT+GGG | - | chr8_1:2003699-2003718 | None:intergenic | 50.0% |
| TCTCTTCGGAGAAAGAAGCG+TGG | - | chr8_1:2003700-2003719 | None:intergenic | 50.0% | |
| CAAGCGACGGTTCAACTCTT+TGG | - | chr8_1:2003810-2003829 | None:intergenic | 50.0% | |
| TGGAGATTAGGGACAAGCGA+CGG | - | chr8_1:2003823-2003842 | None:intergenic | 50.0% | |
| GGCACAAGATGAGTCGACAT+TGG | - | chr8_1:2003843-2003862 | None:intergenic | 50.0% | |
| TGCCGTTGATGCAATGCGTT+TGG | + | chr8_1:2003859-2003878 | Msa1172130:CDS | 50.0% | |
| GCCGTTGATGCAATGCGTTT+GGG | + | chr8_1:2003860-2003879 | Msa1172130:CDS | 50.0% | |
| TCTTCCACTGCTGTGGTTTG+TGG | + | chr8_1:2003923-2003942 | Msa1172130:CDS | 50.0% | |
| TACTGGTAGTTCGGAGTCTG+CGG | + | chr8_1:2003982-2004001 | Msa1172130:CDS | 50.0% | |
| ACCCCTTCAAACAGTCTCAC+AGG | - | chr8_1:2004209-2004228 | None:intergenic | 50.0% | |
| CATGGGGAAGGATCGCAATG+AGG | - | chr8_1:2003356-2003375 | None:intergenic | 55.0% | |
| GAACGATGGTAGCATGGGGA+AGG | - | chr8_1:2003368-2003387 | None:intergenic | 55.0% | |
| TCCCCATGCTACCATCGTTC+AGG | + | chr8_1:2003368-2003387 | Msa1172130:CDS | 55.0% | |
| ! | TTTCTGGAGGGTTTCGAGGG+CGG | - | chr8_1:2003505-2003524 | None:intergenic | 55.0% |
| GCGACGGTTCAACTCTTTGG+CGG | - | chr8_1:2003807-2003826 | None:intergenic | 55.0% | |
| ! | GCGTTTGGGTTTGCACAAGG+TGG | + | chr8_1:2003874-2003893 | Msa1172130:CDS | 55.0% |
| AGCACCACAAACCACAGCAG+TGG | - | chr8_1:2003930-2003949 | None:intergenic | 55.0% | |
| ACTGGTAGTTCGGAGTCTGC+GGG | + | chr8_1:2003983-2004002 | Msa1172130:CDS | 55.0% | |
| CATGGGGAAGGATCGCAATG+AGG | - | chr8_1:2003356-2003375 | None:intergenic | 55.0% | |
| GAACGATGGTAGCATGGGGA+AGG | - | chr8_1:2003368-2003387 | None:intergenic | 55.0% | |
| TCCCCATGCTACCATCGTTC+AGG | + | chr8_1:2003368-2003387 | Msa1172130:CDS | 55.0% | |
| ! | TTTCTGGAGGGTTTCGAGGG+CGG | - | chr8_1:2003505-2003524 | None:intergenic | 55.0% |
| GCGACGGTTCAACTCTTTGG+CGG | - | chr8_1:2003807-2003826 | None:intergenic | 55.0% | |
| ! | GCGTTTGGGTTTGCACAAGG+TGG | + | chr8_1:2003874-2003893 | Msa1172130:CDS | 55.0% |
| AGCACCACAAACCACAGCAG+TGG | - | chr8_1:2003930-2003949 | None:intergenic | 55.0% | |
| ACTGGTAGTTCGGAGTCTGC+GGG | + | chr8_1:2003983-2004002 | Msa1172130:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 2003158 | 2004470 | 2003158 | ID=Msa1172130;Name=Msa1172130 |
| chr8_1 | mRNA | 2003158 | 2004470 | 2003158 | ID=Msa1172130-mRNA-1;Parent=Msa1172130;Name=Msa1172130-mRNA-1;_AED=0.04;_eAED=0.04;_QI=157|1|1|1|1|1|3|410|178 |
| chr8_1 | exon | 2003158 | 2003389 | 2003158 | ID=Msa1172130-mRNA-1:exon:754;Parent=Msa1172130-mRNA-1 |
| chr8_1 | exon | 2003477 | 2003532 | 2003477 | ID=Msa1172130-mRNA-1:exon:755;Parent=Msa1172130-mRNA-1 |
| chr8_1 | exon | 2003655 | 2004470 | 2003655 | ID=Msa1172130-mRNA-1:exon:756;Parent=Msa1172130-mRNA-1 |
| chr8_1 | five_prime_UTR | 2003158 | 2003314 | 2003158 | ID=Msa1172130-mRNA-1:five_prime_utr;Parent=Msa1172130-mRNA-1 |
| chr8_1 | CDS | 2003315 | 2003389 | 2003315 | ID=Msa1172130-mRNA-1:cds;Parent=Msa1172130-mRNA-1 |
| chr8_1 | CDS | 2003477 | 2003532 | 2003477 | ID=Msa1172130-mRNA-1:cds;Parent=Msa1172130-mRNA-1 |
| chr8_1 | CDS | 2003655 | 2004060 | 2003655 | ID=Msa1172130-mRNA-1:cds;Parent=Msa1172130-mRNA-1 |
| chr8_1 | three_prime_UTR | 2004061 | 2004470 | 2004061 | ID=Msa1172130-mRNA-1:three_prime_utr;Parent=Msa1172130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
