AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117500 MtrunA17_Chr1g0174271 73.303 442 47 8 2 435 4 382 0.0 600
Msa0117500 MtrunA17_Chr7g0258181 54.348 230 76 3 197 423 112 315 1.85e-70 225
Msa0117500 MtrunA17_Chr4g0032951 49.793 241 100 8 200 428 201 432 7.53e-65 214
Msa0117500 MtrunA17_Chr2g0329041 50.213 235 101 6 201 428 183 408 9.03e-64 211
Msa0117500 MtrunA17_Chr3g0087771 44.878 205 100 4 229 428 203 399 7.36e-44 158
Msa0117500 MtrunA17_Chr8g0351881 41.841 239 120 5 193 423 161 388 5.34e-39 144
Msa0117500 MtrunA17_Chr4g0014771 69.663 89 25 1 335 423 104 190 3.47e-37 134
Msa0117500 MtrunA17_Chr1g0213791 62.617 107 37 2 318 423 233 337 4.62e-36 135
Msa0117500 MtrunA17_Chr4g0074161 59.420 69 27 1 350 418 205 272 1.51e-17 84.3
Msa0117500 MtrunA17_Chr1g0190731 53.333 75 34 1 344 418 186 259 1.93e-16 80.5
Msa0117500 MtrunA17_Chr1g0152131 53.425 73 34 0 349 421 258 330 2.58e-16 80.5
Msa0117500 MtrunA17_Chr3g0131771 56.716 67 29 0 351 417 147 213 1.58e-15 77.4
Msa0117500 MtrunA17_Chr5g0421111 53.521 71 33 0 351 421 365 435 3.97e-15 77.4
Msa0117500 MtrunA17_Chr3g0144641 55.072 69 31 0 351 419 191 259 5.15e-15 76.6
Msa0117500 MtrunA17_Chr7g0234761 53.623 69 32 0 351 419 317 385 9.46e-15 76.3
Msa0117500 MtrunA17_Chr8g0365941 53.623 69 32 0 351 419 305 373 1.18e-14 75.9
Msa0117500 MtrunA17_Chr8g0339091 53.731 67 31 0 351 417 291 357 2.10e-14 75.1
Msa0117500 MtrunA17_Chr4g0035101 50.000 76 36 1 344 419 138 211 2.66e-14 73.9
Msa0117500 MtrunA17_Chr8g0385911 52.174 69 33 0 351 419 145 213 3.87e-14 73.2
Msa0117500 MtrunA17_Chr8g0363921 50.746 67 33 0 351 417 151 217 1.91e-13 70.5
Msa0117500 MtrunA17_Chr5g0415291 49.254 67 34 0 351 417 112 178 2.48e-12 66.6
Msa0117500 MtrunA17_Chr7g0258161 45.070 71 39 0 349 419 171 241 7.35e-12 66.2
Msa0117500 MtrunA17_Chr1g0152651 54.545 66 29 1 350 415 273 337 9.57e-12 66.2
Msa0117500 MtrunA17_Chr3g0134741 54.545 66 29 1 350 415 228 292 1.34e-11 65.5
Msa0117500 MtrunA17_Chr1g0174161 43.662 71 40 0 349 419 158 228 2.29e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117500 AT2G42280.1 52.381 252 95 4 182 428 125 356 2.02e-71 229
Msa0117500 AT2G42280.1 35.758 165 78 4 1 147 1 155 4.10e-15 77.0
Msa0117500 AT2G42280.3 51.695 236 89 4 182 412 125 340 1.22e-62 207
Msa0117500 AT2G42280.3 35.758 165 78 4 1 147 1 155 3.29e-15 77.0
Msa0117500 AT1G51140.1 32.644 435 203 16 6 423 15 376 2.67e-44 159
Msa0117500 AT1G05805.1 39.506 243 113 9 185 423 143 355 1.73e-38 143
Msa0117500 AT1G35460.1 68.966 87 25 1 337 423 169 253 3.03e-38 139
Msa0117500 AT2G43140.1 62.857 105 38 1 320 423 102 206 2.55e-37 135
Msa0117500 AT2G43140.2 60.909 110 42 1 320 428 199 308 8.56e-37 137
Msa0117500 AT4G09180.1 65.909 88 28 1 337 424 172 257 1.38e-34 130
Msa0117500 AT2G42280.2 42.708 192 85 4 182 368 125 296 2.21e-31 122
Msa0117500 AT2G42280.2 35.758 165 78 4 1 147 1 155 4.33e-15 76.3
Msa0117500 AT1G35460.2 79.245 53 9 1 337 389 169 219 4.82e-23 97.4
Msa0117500 AT2G24260.2 60.870 69 26 1 350 418 34 101 1.93e-18 84.7
Msa0117500 AT2G24260.1 60.870 69 26 1 350 418 137 204 8.14e-18 84.7
Msa0117500 AT4G30980.1 59.420 69 27 1 350 418 129 196 1.91e-17 83.2
Msa0117500 AT4G30980.2 57.333 75 30 2 344 418 172 244 3.79e-17 82.8
Msa0117500 AT5G58010.1 55.072 69 30 1 350 418 98 165 1.58e-16 80.1
Msa0117500 AT4G34530.1 56.522 69 30 0 351 419 172 240 6.12e-16 79.0
Msa0117500 AT1G10120.2 54.930 71 32 0 351 421 206 276 1.65e-15 78.2
Msa0117500 AT1G10120.1 54.930 71 32 0 351 421 206 276 1.65e-15 78.2
Msa0117500 AT5G50915.3 56.716 67 29 0 351 417 136 202 2.14e-15 76.6
Msa0117500 AT5G50915.4 56.716 67 29 0 351 417 136 202 2.14e-15 76.6
Msa0117500 AT5G50915.1 56.716 67 29 0 351 417 136 202 2.67e-15 76.6
Msa0117500 AT5G50915.2 56.716 67 29 0 351 417 136 202 2.67e-15 76.6
Msa0117500 AT1G68920.3 52.113 71 34 0 351 421 302 372 6.82e-15 77.0
Msa0117500 AT1G68920.1 52.113 71 34 0 351 421 303 373 7.34e-15 77.0
Msa0117500 AT1G68920.4 52.113 71 34 0 351 421 303 373 7.34e-15 77.0
Msa0117500 AT1G68920.2 52.113 71 34 0 351 421 303 373 7.34e-15 77.0
Msa0117500 AT1G25330.1 45.055 91 48 2 342 431 96 185 9.45e-15 73.6
Msa0117500 AT1G26260.5 55.224 67 30 0 351 417 201 267 2.79e-14 74.3
Msa0117500 AT3G07340.2 53.731 67 31 0 351 417 258 324 3.06e-14 74.7
Msa0117500 AT1G26260.3 55.224 67 30 0 351 417 172 238 3.31e-14 73.9
Msa0117500 AT3G07340.1 53.731 67 31 0 351 417 258 324 3.35e-14 74.7
Msa0117500 AT1G26260.4 55.224 67 30 0 351 417 223 289 3.40e-14 74.3
Msa0117500 AT1G26260.1 55.224 67 30 0 351 417 223 289 3.40e-14 74.3
Msa0117500 AT1G26260.6 55.224 67 30 0 351 417 223 289 3.40e-14 74.3
Msa0117500 AT1G26260.2 55.224 67 30 0 351 417 223 289 3.40e-14 74.3
Msa0117500 AT5G48560.1 47.368 76 40 0 351 426 301 376 4.53e-14 74.3
Msa0117500 AT5G48560.2 47.368 76 40 0 351 426 301 376 4.82e-14 74.3
Msa0117500 AT3G23690.1 50.725 69 34 0 351 419 191 259 2.78e-13 71.2
Msa0117500 AT1G59640.1 50.746 67 33 0 351 417 136 202 4.44e-13 69.7
Msa0117500 AT2G42300.4 46.053 76 40 1 345 419 178 253 6.09e-13 69.3
Msa0117500 AT2G42300.1 46.053 76 40 1 345 419 178 253 6.28e-13 70.1
Msa0117500 AT1G18400.2 47.826 69 36 0 349 417 143 211 7.39e-13 68.6
Msa0117500 AT1G73830.2 49.254 67 34 0 351 417 147 213 9.35e-13 68.6
Msa0117500 AT1G73830.1 49.254 67 34 0 351 417 147 213 9.83e-13 68.6
Msa0117500 AT1G18400.1 47.826 69 36 0 349 417 143 211 1.09e-12 68.2
Msa0117500 AT2G18300.1 47.826 69 36 0 351 419 185 253 1.25e-12 68.9
Msa0117500 AT2G18300.2 47.826 69 36 0 351 419 185 253 1.28e-12 68.9
Msa0117500 AT4G36540.1 45.455 77 40 1 341 417 133 207 1.39e-12 68.6
Msa0117500 AT4G36540.2 45.455 77 40 1 341 417 133 207 1.53e-12 68.6
Msa0117500 AT1G59640.2 50.746 67 33 0 351 417 136 202 1.92e-12 68.6
Msa0117500 AT2G18300.3 47.826 69 36 0 351 419 185 253 1.96e-12 68.9
Msa0117500 AT3G57800.2 46.479 71 38 0 349 419 202 272 1.99e-12 68.9
Msa0117500 AT1G27740.1 52.857 70 32 1 346 415 162 230 9.61e-12 65.5
Msa0117500 AT2G14760.1 54.545 66 29 1 350 415 236 300 1.29e-11 65.9
Msa0117500 AT4G33880.1 54.545 66 29 1 350 415 265 329 1.41e-11 66.2
Msa0117500 AT5G62610.2 46.269 67 36 0 351 417 153 219 2.31e-11 64.7
Msa0117500 AT5G62610.1 46.269 67 36 0 351 417 153 219 2.31e-11 64.7

Find 121 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGATAATAATAATATTTC+TGG 0.136535 1_3:+38448595 Msa0117500:CDS
ACATCACATGATAAGAATTT+TGG 0.193728 1_3:+38448754 Msa0117500:CDS
TCTGCTATGGATGGTTCTTT+TGG 0.221242 1_3:+38448700 Msa0117500:CDS
GGAAACTATGCCACGGTAAA+TGG 0.245415 1_3:+38450128 Msa0117500:CDS
TACAGTAACATTATTTATAA+TGG 0.246127 1_3:+38448399 Msa0117500:exon
GACCTACATGCTTTGAATTC+AGG 0.246604 1_3:-38451707 None:intergenic
CAGAACCAATCCAATTCTTC+TGG 0.250255 1_3:+38448442 Msa0117500:CDS
TTAAGAGTAAAACATTTATT+AGG 0.250342 1_3:-38451832 None:intergenic
AAAGATAGGGATAAATAAAA+AGG 0.251395 1_3:-38448150 None:intergenic
TGTTCTAAGGAAATGAATTC+TGG 0.257572 1_3:+38448625 Msa0117500:CDS
TCCAACATTTCCTTTCAAAA+TGG 0.262412 1_3:+38448820 Msa0117500:CDS
CTGGATTCCCCTATAGTTCT+TGG 0.264196 1_3:+38450327 Msa0117500:CDS
TTCTGGTTCATCTTGTTCTA+AGG 0.264253 1_3:+38448612 Msa0117500:CDS
CCAATATAGATTAATACTAT+TGG 0.266205 1_3:-38451789 None:intergenic
TGAAAGGGACAAGGAAAGAT+AGG 0.311528 1_3:-38448164 None:intergenic
CCAATAGTATTAATCTATAT+TGG 0.322787 1_3:+38451789 Msa0117500:three_prime_UTR
ATTTGTACCTTATCCATGTT+TGG 0.331656 1_3:-38450908 None:intergenic
TTTGGATTGGTTGGTTCATT+GGG 0.337311 1_3:+38448718 Msa0117500:CDS
AGTATCGTTCCAAGAACTAT+AGG 0.348915 1_3:-38450336 None:intergenic
TCAAGAAATGCTTCTTCCTT+GGG 0.356423 1_3:+38450209 Msa0117500:CDS
ACGAAGCAACCCAGAAGAAT+TGG 0.359803 1_3:-38448452 None:intergenic
TTCAAGAAATGCTTCTTCCT+TGG 0.367694 1_3:+38450208 Msa0117500:CDS
CCGTTGCTACCTCCGTCATC+AGG 0.377114 1_3:-38450284 None:intergenic
GCTCCTTCCAAGGACGTTCC+CGG 0.380905 1_3:-38449009 None:intergenic
ACTCATCAGCGTGGAGGGCT+TGG 0.396464 1_3:+38450515 Msa0117500:intron
GTTTGCTCGTTTATCACTTA+GGG 0.399495 1_3:-38451565 None:intergenic
GTATCGTTCCAAGAACTATA+GGG 0.399539 1_3:-38450335 None:intergenic
AAGGAAATGAATTCTGGTTA+TGG 0.401146 1_3:+38448631 Msa0117500:CDS
TGAGCCCAAGCAACTTGGTT+TGG 0.405304 1_3:+38449042 Msa0117500:CDS
ACCTACATGCTTTGAATTCA+GGG 0.417455 1_3:-38451706 None:intergenic
ATTGGTTGGTTCATTGGGAA+TGG 0.419938 1_3:+38448723 Msa0117500:CDS
ATAGTTTCCAACGCCTTTCA+TGG 0.421587 1_3:-38450114 None:intergenic
TGGTTCAAATCTTCTTAGAC+AGG 0.423641 1_3:+38448774 Msa0117500:CDS
ATGAATTCTGGTTATGGTGC+TGG 0.434475 1_3:+38448637 Msa0117500:CDS
TGGCCAAGCGTTGTTCCCAC+TGG 0.434491 1_3:+38448967 Msa0117500:CDS
GTATTCCCCGGGAACGTCCT+TGG 0.436340 1_3:+38449002 Msa0117500:CDS
CTCCTTCCAAGGACGTTCCC+GGG 0.439117 1_3:-38449008 None:intergenic
GCTTCTAGTTCTGCTATGGA+TGG 0.439803 1_3:+38448691 Msa0117500:CDS
CAAGAGAACAAAACAAAAGT+AGG 0.444303 1_3:-38448273 None:intergenic
AACGGTGATTCTACTCACTA+TGG 0.453244 1_3:+38450302 Msa0117500:CDS
AGTTTGCTCGTTTATCACTT+AGG 0.455813 1_3:-38451566 None:intergenic
TTCCCAGTGGGAACAACGCT+TGG 0.461024 1_3:-38448970 None:intergenic
TTCTGCTTCTAGTTCTGCTA+TGG 0.461461 1_3:+38448687 Msa0117500:CDS
GTGCGTAGAGGCATGCGCAC+TGG 0.462431 1_3:+38448947 Msa0117500:intron
GATTCTACTCACTATGGCTC+TGG 0.464368 1_3:+38450308 Msa0117500:CDS
AGTACAAGTTCGTGGTTCTC+TGG 0.465344 1_3:+38449737 Msa0117500:CDS
ACCCTCTCGGCAATGCTTCG+AGG 0.468775 1_3:-38450674 None:intergenic
AAAGTTTCTTTAGATTAAAG+TGG 0.471862 1_3:+38451743 Msa0117500:three_prime_UTR
GCCACTGAGCCCAAGCAACT+TGG 0.472170 1_3:+38449037 Msa0117500:CDS
CCAAACCAAACCAAGTTGCT+TGG 0.472419 1_3:-38449047 None:intergenic
AAGGAAGAAGCATTTCTTGA+AGG 0.479751 1_3:-38450206 None:intergenic
TCCTCGAAGCATTGCCGAGA+GGG 0.481258 1_3:+38450673 Msa0117500:CDS
TGTAAAATTCGAGCGAAAAG+AGG 0.493630 1_3:+38450638 Msa0117500:CDS
GCTTGTTCCAAACATGGATA+AGG 0.495622 1_3:+38450901 Msa0117500:CDS
TCACCAGAAGAAGGAAAAGA+AGG 0.496661 1_3:-38448514 None:intergenic
CAGAGAGAGATCAAAGTGAA+AGG 0.499422 1_3:-38448180 None:intergenic
AGAACCAATCCAATTCTTCT+GGG 0.502541 1_3:+38448443 Msa0117500:CDS
AGAGAGAGATCAAAGTGAAA+GGG 0.505286 1_3:-38448179 None:intergenic
CAAACCAAACCAAGTTGCTT+GGG 0.506840 1_3:-38449046 None:intergenic
AGGAAGAAGCATTTCTTGAA+GGG 0.507126 1_3:-38450205 None:intergenic
ATGTTGGAGAAAAGACCAGC+AGG 0.517169 1_3:-38448805 None:intergenic
ATCTCAGTGGTTTGAAAAGA+GGG 0.517303 1_3:+38450375 Msa0117500:CDS
ATCATCTCAGATGACGTGTT+CGG 0.518952 1_3:-38450575 None:intergenic
TTCAGCTTAGGAACAAAGCA+GGG 0.521484 1_3:-38448321 None:intergenic
TTTCAGCTTAGGAACAAAGC+AGG 0.524207 1_3:-38448322 None:intergenic
AATCTCAGTGGTTTGAAAAG+AGG 0.526692 1_3:+38450374 Msa0117500:CDS
CCACCTCATTATCCTAGACA+TGG 0.529372 1_3:+38448664 Msa0117500:CDS
AGGTAACCTGAGTGTTCAAT+CGG 0.530212 1_3:-38450181 None:intergenic
TTATTAGAATCACCAGAAGA+AGG 0.532913 1_3:-38448523 None:intergenic
AGAAGCATTTCTTGAAGGGA+AGG 0.535438 1_3:-38450201 None:intergenic
AACTAATACATCAGACATGT+TGG 0.535882 1_3:+38451046 Msa0117500:CDS
GAAAGGGACAAGGAAAGATA+GGG 0.536386 1_3:-38448163 None:intergenic
AGACAGGGTAGTTCCCCTGC+TGG 0.543236 1_3:+38448790 Msa0117500:CDS
GCAACCCAGAAGAATTGGAT+TGG 0.543641 1_3:-38448447 None:intergenic
AAGAAGAGAAGAGGTGGCTA+TGG 0.548362 1_3:-38448231 None:intergenic
GCAAGAGCTTGTTCCAAACA+TGG 0.548846 1_3:+38450895 Msa0117500:CDS
GGCCAAGCGTTGTTCCCACT+GGG 0.553114 1_3:+38448968 Msa0117500:CDS
TACATCAGACATGTTGGACT+TGG 0.558173 1_3:+38451052 Msa0117500:CDS
GAATCGAACTCGGTATTCCC+CGG 0.558333 1_3:+38448990 Msa0117500:CDS
CTAAGATCAGTGAAAGAATG+AGG 0.559063 1_3:+38450867 Msa0117500:CDS
TTCCCACTGGGAATCGAACT+CGG 0.563385 1_3:+38448980 Msa0117500:CDS
CGCAATTCAAAGAAGAGAAG+AGG 0.564503 1_3:-38448240 None:intergenic
CGTTGCTACCTCCGTCATCA+GGG 0.572371 1_3:-38450283 None:intergenic
CTAGAAGCAGAACCATGTCT+AGG 0.577677 1_3:-38448676 None:intergenic
GAGCAAACTGCAAATGTATG+AGG 0.578835 1_3:+38451580 Msa0117500:CDS
TCCCCGGGAACGTCCTTGGA+AGG 0.580649 1_3:+38449006 Msa0117500:CDS
ACCAAGTTGCTTGGGCTCAG+TGG 0.586686 1_3:-38449038 None:intergenic
TTCGCAAAAGTACTGAGAGT+TGG 0.587857 1_3:+38449708 Msa0117500:CDS
GTTGCTTGGGCTCAGTGGCA+AGG 0.590030 1_3:-38449033 None:intergenic
GTGGCAAGGAGCTCCTTCCA+AGG 0.591784 1_3:-38449019 None:intergenic
GGTATGCGAGTACAAGTTCG+TGG 0.592023 1_3:+38449729 Msa0117500:CDS
AATCGAACTCGGTATTCCCC+GGG 0.593437 1_3:+38448991 Msa0117500:CDS
GAACCATGTCTAGGATAATG+AGG 0.594617 1_3:-38448667 None:intergenic
GTCATCTGAGATGATTGCTA+TGG 0.594714 1_3:+38450583 Msa0117500:CDS
AGATCAAAGTGAAAGGGACA+AGG 0.595140 1_3:-38448173 None:intergenic
TAAACAAAATCATACCCTCT+CGG 0.600646 1_3:-38450687 None:intergenic
GCCACGGTAAATGGTAGTAA+CGG 0.609242 1_3:+38450137 Msa0117500:CDS
CCTGATGACGGAGGTAGCAA+CGG 0.614696 1_3:+38450284 Msa0117500:CDS
TATCGTTCCAAGAACTATAG+GGG 0.622302 1_3:-38450334 None:intergenic
TCCTTCCAAGGACGTTCCCG+GGG 0.622327 1_3:-38449007 None:intergenic
GGTTCAAATCTTCTTAGACA+GGG 0.631058 1_3:+38448775 Msa0117500:CDS
GCCGTTACTACCATTTACCG+TGG 0.637465 1_3:-38450138 None:intergenic
GAAGCAACTAGCCCTGATGA+CGG 0.637823 1_3:+38450272 Msa0117500:CDS
TATCTCTGAAATAGATAGCG+AGG 0.637851 1_3:+38450244 Msa0117500:CDS
GTGTTCAATCGGTTAATAGA+CGG 0.638059 1_3:-38450170 None:intergenic
TGTTGGAGAAAAGACCAGCA+GGG 0.641864 1_3:-38448804 None:intergenic
GATATGTGACAATATTCCCA+AGG 0.645646 1_3:-38450225 None:intergenic
TACCGAGTTCGATTCCCAGT+GGG 0.652274 1_3:-38448982 None:intergenic
AATTCAAAGAAGAGAAGAGG+TGG 0.659106 1_3:-38448237 None:intergenic
ACCCTGAATTCAAAGCATGT+AGG 0.668934 1_3:+38451705 Msa0117500:three_prime_UTR
TATTAACCGATTGAACACTC+AGG 0.669123 1_3:+38450175 Msa0117500:CDS
TCAGCTTAGGAACAAAGCAG+GGG 0.671703 1_3:-38448320 None:intergenic
CTAATCCGGCTAGTGCGTAG+AGG 0.675720 1_3:+38448935 Msa0117500:intron
GTTGGAGAAAAGACCAGCAG+GGG 0.676212 1_3:-38448803 None:intergenic
AGGCGTTGGAAACTATGCCA+CGG 0.680755 1_3:+38450121 Msa0117500:CDS
ATCCTCGAAGCATTGCCGAG+AGG 0.702830 1_3:+38450672 Msa0117500:CDS
CAAATGTATGAGGATGCAGA+AGG 0.707448 1_3:+38451590 Msa0117500:CDS
GCAACTAGCCCTGATGACGG+AGG 0.713476 1_3:+38450275 Msa0117500:CDS
CCATGTCTAGGATAATGAGG+TGG 0.720480 1_3:-38448664 None:intergenic
TCATTCACAGAAAATCTCAG+TGG 0.729969 1_3:+38450362 Msa0117500:CDS
ATACCGAGTTCGATTCCCAG+TGG 0.745051 1_3:-38448983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTAATTAA+TGG + chr1_3:38450973-38450992 Msa0117500:intron 0.0%
!! AAAAAAAAAAATGATTATGA+TGG + chr1_3:38449399-38449418 Msa0117500:intron 10.0%
!!! AAGTTATATTTTTCATTAAT+AGG + chr1_3:38449571-38449590 Msa0117500:intron 10.0%
!! TACAGTAACATTATTTATAA+TGG + chr1_3:38448399-38448418 Msa0117500:exon 15.0%
!!! ATAAAGTTACTAAACATTTT+TGG + chr1_3:38448542-38448561 Msa0117500:CDS 15.0%
!!! TAAAGTTACTAAACATTTTT+GGG + chr1_3:38448543-38448562 Msa0117500:CDS 15.0%
!! AACGATAATAATAATATTTC+TGG + chr1_3:38448595-38448614 Msa0117500:CDS 15.0%
!!! TATGTTTTATGTTGTTATTT+TGG + chr1_3:38448846-38448865 Msa0117500:intron 15.0%
!! ATTTATTGAATGAATCTAAA+AGG - chr1_3:38449841-38449860 None:intergenic 15.0%
!! TATATACAATTCATTCTTAA+TGG + chr1_3:38450053-38450072 Msa0117500:intron 15.0%
!! ATTTATGAAATTATAACCAT+CGG - chr1_3:38451463-38451482 None:intergenic 15.0%
!!! TATATTGGTAATTTTGTATA+GGG + chr1_3:38451804-38451823 Msa0117500:three_prime_UTR 15.0%
!! TTAAGAGTAAAACATTTATT+AGG - chr1_3:38451835-38451854 None:intergenic 15.0%
!! AAGATAGGGATAAATAAAAA+GGG - chr1_3:38448152-38448171 None:intergenic 20.0%
!! AAAGATAGGGATAAATAAAA+AGG - chr1_3:38448153-38448172 None:intergenic 20.0%
!! TTACTGTAAAAAGATGAAAA+GGG - chr1_3:38448387-38448406 None:intergenic 20.0%
!!! AAACATATTACCATTTTGAA+AGG - chr1_3:38448833-38448852 None:intergenic 20.0%
!!! TTTATGTTGTTATTTTGGTT+TGG + chr1_3:38448851-38448870 Msa0117500:intron 20.0%
!! TATGAGTAATGATATTAATG+AGG + chr1_3:38449150-38449169 Msa0117500:intron 20.0%
!!! TATGAATGATTTTTTGTTGT+AGG + chr1_3:38449218-38449237 Msa0117500:intron 20.0%
!!! ATGAATGATTTTTTGTTGTA+GGG + chr1_3:38449219-38449238 Msa0117500:intron 20.0%
!!! TTAATGTTGTTTTAGTTTTC+TGG + chr1_3:38449258-38449277 Msa0117500:intron 20.0%
!! GAATTTAATGATTCAATTTG+TGG + chr1_3:38449454-38449473 Msa0117500:intron 20.0%
!!! TTTTCATTAATAGGATATGA+AGG + chr1_3:38449580-38449599 Msa0117500:intron 20.0%
!! TTTCATTAATAGGATATGAA+GGG + chr1_3:38449581-38449600 Msa0117500:intron 20.0%
!!! AAAAATGTTTTCTGATATTC+AGG + chr1_3:38450412-38450431 Msa0117500:CDS 20.0%
!! AAATCTTCAAAAACAATTCA+AGG + chr1_3:38451091-38451110 Msa0117500:CDS 20.0%
!! ATATATAAGGAGAGATAATT+TGG + chr1_3:38451117-38451136 Msa0117500:intron 20.0%
!! TTGCTAATTCATAAAAGTTA+TGG - chr1_3:38451218-38451237 None:intergenic 20.0%
!! TAATAGCTAAACTTAATTCA+GGG + chr1_3:38451427-38451446 Msa0117500:intron 20.0%
!! AAAGTTTCTTTAGATTAAAG+TGG + chr1_3:38451743-38451762 Msa0117500:three_prime_UTR 20.0%
!! CCAATATAGATTAATACTAT+TGG - chr1_3:38451792-38451811 None:intergenic 20.0%
!! CCAATAGTATTAATCTATAT+TGG + chr1_3:38451789-38451808 Msa0117500:three_prime_UTR 20.0%
!!! CTATATTGGTAATTTTGTAT+AGG + chr1_3:38451803-38451822 Msa0117500:three_prime_UTR 20.0%
!!! ATATTGGTAATTTTGTATAG+GGG + chr1_3:38451805-38451824 Msa0117500:three_prime_UTR 20.0%
! ATTCAAAAAAGTTTCAGCTT+AGG - chr1_3:38448336-38448355 None:intergenic 25.0%
!! TTCTCTGTTTTCACATATAA+TGG + chr1_3:38448358-38448377 Msa0117500:five_prime_UTR 25.0%
! GTTACTGTAAAAAGATGAAA+AGG - chr1_3:38448388-38448407 None:intergenic 25.0%
!! ACATCACATGATAAGAATTT+TGG + chr1_3:38448754-38448773 Msa0117500:CDS 25.0%
! TTTGGTTATTTATAGTTGCA+GGG + chr1_3:38449065-38449084 Msa0117500:intron 25.0%
! ATTAATGAGGATATGTGTAT+TGG + chr1_3:38449163-38449182 Msa0117500:intron 25.0%
!! TAATGAGAATATTGCTACTT+TGG + chr1_3:38449315-38449334 Msa0117500:intron 25.0%
! AATTGTGGTATGTATGAAAA+TGG + chr1_3:38449374-38449393 Msa0117500:intron 25.0%
! TTCATTAATAGGATATGAAG+GGG + chr1_3:38449582-38449601 Msa0117500:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr1_3:38449923-38449942 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_3:38449849-38449868 Msa0117500:intron 25.0%
! CATTTAATAGATGATGTATG+TGG - chr1_3:38449888-38449907 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr1_3:38449923-38449942 Msa0117500:intron 25.0%
!! CTGAAAAATCTGAAATGTTA+TGG + chr1_3:38449973-38449992 Msa0117500:intron 25.0%
! TCATTCTTAATGGTTATTGA+TGG + chr1_3:38450063-38450082 Msa0117500:intron 25.0%
! AGAAGCTTGAAAAAACTAAT+TGG - chr1_3:38450723-38450742 None:intergenic 25.0%
!! TTGAAGAAGTAACTATTTTC+AGG + chr1_3:38450835-38450854 Msa0117500:intron 25.0%
!!! ACATCAATTTTGTTTGACTT+TGG + chr1_3:38450936-38450955 Msa0117500:intron 25.0%
!! TGTTTGACTTTGGAAAATAT+TGG + chr1_3:38450946-38450965 Msa0117500:intron 25.0%
! ATTAATGGTATAGTTGTGTT+TGG + chr1_3:38450992-38451011 Msa0117500:intron 25.0%
! CAATTCAAGGTACATATATA+AGG + chr1_3:38451104-38451123 Msa0117500:intron 25.0%
!! AATTAGCAATAATGATGATG+TGG + chr1_3:38451229-38451248 Msa0117500:intron 25.0%
! TTATGCACTAGTAAAATCTT+AGG + chr1_3:38451313-38451332 Msa0117500:intron 25.0%
! CTAATAGCTAAACTTAATTC+AGG + chr1_3:38451426-38451445 Msa0117500:intron 25.0%
! TCAATCACTATGATGATAAA+GGG - chr1_3:38451500-38451519 None:intergenic 25.0%
! ATCAATCACTATGATGATAA+AGG - chr1_3:38451501-38451520 None:intergenic 25.0%
! TCATAGTGATTGATATTAAC+TGG + chr1_3:38451507-38451526 Msa0117500:intron 25.0%
!! TCTAAAGAAACTTTTTGTTG+TGG - chr1_3:38451737-38451756 None:intergenic 25.0%
!!! TATTGGTAATTTTGTATAGG+GGG + chr1_3:38451806-38451825 Msa0117500:three_prime_UTR 25.0%
!! TTTTGAAAAGAGTGAAAGAG+AGG - chr1_3:38448093-38448112 None:intergenic 30.0%
CAAGAGAACAAAACAAAAGT+AGG - chr1_3:38448276-38448295 None:intergenic 30.0%
!!! AGATTTTGAAACAGTGAACT+AGG - chr1_3:38448490-38448509 None:intergenic 30.0%
TTATTAGAATCACCAGAAGA+AGG - chr1_3:38448526-38448545 None:intergenic 30.0%
!! GTTACTAAACATTTTTGGGA+TGG + chr1_3:38448547-38448566 Msa0117500:CDS 30.0%
!! TGTTCTAAGGAAATGAATTC+TGG + chr1_3:38448625-38448644 Msa0117500:CDS 30.0%
! AAGGAAATGAATTCTGGTTA+TGG + chr1_3:38448631-38448650 Msa0117500:CDS 30.0%
TCCAACATTTCCTTTCAAAA+TGG + chr1_3:38448820-38448839 Msa0117500:CDS 30.0%
!! ACCATTTTGAAAGGAAATGT+TGG - chr1_3:38448824-38448843 None:intergenic 30.0%
!!! TTTATTTTTGGCTTTCGCAT+TGG + chr1_3:38448887-38448906 Msa0117500:intron 30.0%
GTTTGGTTATTTATAGTTGC+AGG + chr1_3:38449064-38449083 Msa0117500:intron 30.0%
ATGGTGACATGTACAATTTA+TGG + chr1_3:38449418-38449437 Msa0117500:intron 30.0%
AGATTCACTCAATTCAAACT+AGG - chr1_3:38449520-38449539 None:intergenic 30.0%
!!! GGTAGAAAGTAGTTTTTTTG+TGG + chr1_3:38449548-38449567 Msa0117500:intron 30.0%
! AAGGGAAATAAAAGCATAAG+TGG - chr1_3:38449635-38449654 None:intergenic 30.0%
AATTCACAAAAGCTCATGTA+GGG - chr1_3:38449665-38449684 None:intergenic 30.0%
! ATTTTACAAGGAACAGAATC+TGG - chr1_3:38450626-38450645 None:intergenic 30.0%
TAAACAAAATCATACCCTCT+CGG - chr1_3:38450690-38450709 None:intergenic 30.0%
ATTTGTACCTTATCCATGTT+TGG - chr1_3:38450911-38450930 None:intergenic 30.0%
TTGACATTTCTTCATGTTCT+TGG + chr1_3:38451018-38451037 Msa0117500:intron 30.0%
AACTAATACATCAGACATGT+TGG + chr1_3:38451046-38451065 Msa0117500:CDS 30.0%
!! AAGGAGAGATAATTTGGTTT+TGG + chr1_3:38451123-38451142 Msa0117500:intron 30.0%
AATTTCCGTTTCACTTGTAA+GGG - chr1_3:38451160-38451179 None:intergenic 30.0%
AAATTTCCGTTTCACTTGTA+AGG - chr1_3:38451161-38451180 None:intergenic 30.0%
GATCGATAGTTACAATTTCA+GGG - chr1_3:38451187-38451206 None:intergenic 30.0%
TGATCGATAGTTACAATTTC+AGG - chr1_3:38451188-38451207 None:intergenic 30.0%
TCATTTCATTCTTATAGACG+TGG - chr1_3:38451281-38451300 None:intergenic 30.0%
TAGCAACTGAGTTAAGTTAA+CGG - chr1_3:38451349-38451368 None:intergenic 30.0%
ACTGCAAGTAATAGAAAAAG+GGG - chr1_3:38451545-38451564 None:intergenic 30.0%
GACTGCAAGTAATAGAAAAA+GGG - chr1_3:38451546-38451565 None:intergenic 30.0%
AGAGAGAGATCAAAGTGAAA+GGG - chr1_3:38448182-38448201 None:intergenic 35.0%
AATTCAAAGAAGAGAAGAGG+TGG - chr1_3:38448240-38448259 None:intergenic 35.0%
AGAACCAATCCAATTCTTCT+GGG + chr1_3:38448443-38448462 Msa0117500:CDS 35.0%
!! TTCTGGTTCATCTTGTTCTA+AGG + chr1_3:38448612-38448631 Msa0117500:CDS 35.0%
! TATGGATGGTTCTTTTGGAT+TGG + chr1_3:38448705-38448724 Msa0117500:CDS 35.0%
!!! TTTTGGATTGGTTGGTTCAT+TGG + chr1_3:38448717-38448736 Msa0117500:CDS 35.0%
!! TTTGGATTGGTTGGTTCATT+GGG + chr1_3:38448718-38448737 Msa0117500:CDS 35.0%
TGGTTCAAATCTTCTTAGAC+AGG + chr1_3:38448774-38448793 Msa0117500:CDS 35.0%
GGTTCAAATCTTCTTAGACA+GGG + chr1_3:38448775-38448794 Msa0117500:CDS 35.0%
!! TTTGTTGTAGGGTGTTCTTT+TGG + chr1_3:38449230-38449249 Msa0117500:intron 35.0%
GTTAATTGCAATCACCTACA+AGG + chr1_3:38449346-38449365 Msa0117500:intron 35.0%
ATTGAGTGAATCTCAGCTTT+AGG + chr1_3:38449527-38449546 Msa0117500:intron 35.0%
TAATAGGATATGAAGGGGAT+TGG + chr1_3:38449587-38449606 Msa0117500:intron 35.0%
CAATTCACAAAAGCTCATGT+AGG - chr1_3:38449666-38449685 None:intergenic 35.0%
TTGTGAATTGTTCGCGAATT+AGG + chr1_3:38449676-38449695 Msa0117500:intron 35.0%
! TACAGTTTTTATACTTCCGC+CGG + chr1_3:38449792-38449811 Msa0117500:intron 35.0%
ATGTATGTGGTCTACATTGT+AGG + chr1_3:38449862-38449881 Msa0117500:intron 35.0%
TAATACAAATGTACTCCCTC+CGG - chr1_3:38449945-38449964 None:intergenic 35.0%
! TGGTAATGTTCATTAGTTGC+AGG + chr1_3:38450083-38450102 Msa0117500:intron 35.0%
GGTAATGTTCATTAGTTGCA+GGG + chr1_3:38450084-38450103 Msa0117500:intron 35.0%
GTGTTCAATCGGTTAATAGA+CGG - chr1_3:38450173-38450192 None:intergenic 35.0%
TATTAACCGATTGAACACTC+AGG + chr1_3:38450175-38450194 Msa0117500:CDS 35.0%
!! AGGAAGAAGCATTTCTTGAA+GGG - chr1_3:38450208-38450227 None:intergenic 35.0%
!! AAGGAAGAAGCATTTCTTGA+AGG - chr1_3:38450209-38450228 None:intergenic 35.0%
TTCAAGAAATGCTTCTTCCT+TGG + chr1_3:38450208-38450227 Msa0117500:CDS 35.0%
TCAAGAAATGCTTCTTCCTT+GGG + chr1_3:38450209-38450228 Msa0117500:CDS 35.0%
GATATGTGACAATATTCCCA+AGG - chr1_3:38450228-38450247 None:intergenic 35.0%
!! TATCTCTGAAATAGATAGCG+AGG + chr1_3:38450244-38450263 Msa0117500:CDS 35.0%
TATCGTTCCAAGAACTATAG+GGG - chr1_3:38450337-38450356 None:intergenic 35.0%
GTATCGTTCCAAGAACTATA+GGG - chr1_3:38450338-38450357 None:intergenic 35.0%
AGTATCGTTCCAAGAACTAT+AGG - chr1_3:38450339-38450358 None:intergenic 35.0%
TCATTCACAGAAAATCTCAG+TGG + chr1_3:38450362-38450381 Msa0117500:CDS 35.0%
AATCTCAGTGGTTTGAAAAG+AGG + chr1_3:38450374-38450393 Msa0117500:CDS 35.0%
ATCTCAGTGGTTTGAAAAGA+GGG + chr1_3:38450375-38450394 Msa0117500:CDS 35.0%
TCTGATATTCAGGTATGTGT+AGG + chr1_3:38450422-38450441 Msa0117500:intron 35.0%
! GAAGCTCACTTCACTTATTT+TGG + chr1_3:38450444-38450463 Msa0117500:intron 35.0%
!!! ATTTGTTTTACTCATCAGCG+TGG + chr1_3:38450506-38450525 Msa0117500:intron 35.0%
! CTTTTCGCTCGAATTTTACA+AGG - chr1_3:38450638-38450657 None:intergenic 35.0%
TGTAAAATTCGAGCGAAAAG+AGG + chr1_3:38450638-38450657 Msa0117500:CDS 35.0%
CTAAGATCAGTGAAAGAATG+AGG + chr1_3:38450867-38450886 Msa0117500:CDS 35.0%
AATGGTATAGTTGTGTTTGG+AGG + chr1_3:38450995-38451014 Msa0117500:intron 35.0%
! TGATGATGTGGAATTTCATG+TGG + chr1_3:38451241-38451260 Msa0117500:intron 35.0%
AGCAACTGAGTTAAGTTAAC+GGG - chr1_3:38451348-38451367 None:intergenic 35.0%
GGACTGCAAGTAATAGAAAA+AGG - chr1_3:38451547-38451566 None:intergenic 35.0%
GTTTGCTCGTTTATCACTTA+GGG - chr1_3:38451568-38451587 None:intergenic 35.0%
! AGTTTGCTCGTTTATCACTT+AGG - chr1_3:38451569-38451588 None:intergenic 35.0%
! ACCTACATGCTTTGAATTCA+GGG - chr1_3:38451709-38451728 None:intergenic 35.0%
!! AGAAACTTTTTGTTGTGGTG+AGG - chr1_3:38451732-38451751 None:intergenic 35.0%
GAAAGGGACAAGGAAAGATA+GGG - chr1_3:38448166-38448185 None:intergenic 40.0%
TGAAAGGGACAAGGAAAGAT+AGG - chr1_3:38448167-38448186 None:intergenic 40.0%
AGATCAAAGTGAAAGGGACA+AGG - chr1_3:38448176-38448195 None:intergenic 40.0%
CAGAGAGAGATCAAAGTGAA+AGG - chr1_3:38448183-38448202 None:intergenic 40.0%
CGCAATTCAAAGAAGAGAAG+AGG - chr1_3:38448243-38448262 None:intergenic 40.0%
TTCAGCTTAGGAACAAAGCA+GGG - chr1_3:38448324-38448343 None:intergenic 40.0%
TTTCAGCTTAGGAACAAAGC+AGG - chr1_3:38448325-38448344 None:intergenic 40.0%
CAGAACCAATCCAATTCTTC+TGG + chr1_3:38448442-38448461 Msa0117500:CDS 40.0%
! ACACCTTCTTTTCCTTCTTC+TGG + chr1_3:38448511-38448530 Msa0117500:CDS 40.0%
TCACCAGAAGAAGGAAAAGA+AGG - chr1_3:38448517-38448536 None:intergenic 40.0%
! ATGAATTCTGGTTATGGTGC+TGG + chr1_3:38448637-38448656 Msa0117500:CDS 40.0%
! GAACCATGTCTAGGATAATG+AGG - chr1_3:38448670-38448689 None:intergenic 40.0%
!! TTCTGCTTCTAGTTCTGCTA+TGG + chr1_3:38448687-38448706 Msa0117500:CDS 40.0%
! TCTGCTATGGATGGTTCTTT+TGG + chr1_3:38448700-38448719 Msa0117500:CDS 40.0%
!!! GATGGTTCTTTTGGATTGGT+TGG + chr1_3:38448709-38448728 Msa0117500:CDS 40.0%
! ATTGGTTGGTTCATTGGGAA+TGG + chr1_3:38448723-38448742 Msa0117500:CDS 40.0%
CAAACCAAACCAAGTTGCTT+GGG - chr1_3:38449049-38449068 None:intergenic 40.0%
!! ATAGTTGCAGGGTGTTCTTT+TGG + chr1_3:38449076-38449095 Msa0117500:intron 40.0%
ACCTACAAGGCTAGAAATTG+TGG + chr1_3:38449359-38449378 Msa0117500:intron 40.0%
!! ACCACAATTTCTAGCCTTGT+AGG - chr1_3:38449363-38449382 None:intergenic 40.0%
CTCATGTAGGGTGACAAAAA+GGG - chr1_3:38449653-38449672 None:intergenic 40.0%
! CTCTCAGTACTTTTGCGAAT+TGG - chr1_3:38449707-38449726 None:intergenic 40.0%
!! TTCGCAAAAGTACTGAGAGT+TGG + chr1_3:38449708-38449727 Msa0117500:CDS 40.0%
TTGCTTATAATAGTGACCGG+CGG - chr1_3:38449926-38449945 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_3:38449926-38449945 Msa0117500:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_3:38449927-38449946 Msa0117500:intron 40.0%
TAACAACCTAAGATGCAGGT+GGG - chr1_3:38450017-38450036 None:intergenic 40.0%
TTAACAACCTAAGATGCAGG+TGG - chr1_3:38450018-38450037 None:intergenic 40.0%
GTCTTAACAACCTAAGATGC+AGG - chr1_3:38450021-38450040 None:intergenic 40.0%
ATAGTTTCCAACGCCTTTCA+TGG - chr1_3:38450117-38450136 None:intergenic 40.0%
AGGTAACCTGAGTGTTCAAT+CGG - chr1_3:38450184-38450203 None:intergenic 40.0%
!! AGAAGCATTTCTTGAAGGGA+AGG - chr1_3:38450204-38450223 None:intergenic 40.0%
AACGGTGATTCTACTCACTA+TGG + chr1_3:38450302-38450321 Msa0117500:CDS 40.0%
ATCATCTCAGATGACGTGTT+CGG - chr1_3:38450578-38450597 None:intergenic 40.0%
! GTCATCTGAGATGATTGCTA+TGG + chr1_3:38450583-38450602 Msa0117500:CDS 40.0%
GCTTGTTCCAAACATGGATA+AGG + chr1_3:38450901-38450920 Msa0117500:CDS 40.0%
TACATCAGACATGTTGGACT+TGG + chr1_3:38451052-38451071 Msa0117500:CDS 40.0%
GCAACTGAGTTAAGTTAACG+GGG - chr1_3:38451347-38451366 None:intergenic 40.0%
TTAACTCAGTTGCTATGACG+TGG + chr1_3:38451354-38451373 Msa0117500:intron 40.0%
! TCAGGGATGAATTTTACCGA+TGG + chr1_3:38451444-38451463 Msa0117500:intron 40.0%
GAGCAAACTGCAAATGTATG+AGG + chr1_3:38451580-38451599 Msa0117500:CDS 40.0%
CAAATGTATGAGGATGCAGA+AGG + chr1_3:38451590-38451609 Msa0117500:CDS 40.0%
ACCCTGAATTCAAAGCATGT+AGG + chr1_3:38451705-38451724 Msa0117500:three_prime_UTR 40.0%
! GACCTACATGCTTTGAATTC+AGG - chr1_3:38451710-38451729 None:intergenic 40.0%
AAGAAGAGAAGAGGTGGCTA+TGG - chr1_3:38448234-38448253 None:intergenic 45.0%
TCAGCTTAGGAACAAAGCAG+GGG - chr1_3:38448323-38448342 None:intergenic 45.0%
GCAACCCAGAAGAATTGGAT+TGG - chr1_3:38448450-38448469 None:intergenic 45.0%
ACGAAGCAACCCAGAAGAAT+TGG - chr1_3:38448455-38448474 None:intergenic 45.0%
! CCATGTCTAGGATAATGAGG+TGG - chr1_3:38448667-38448686 None:intergenic 45.0%
CCACCTCATTATCCTAGACA+TGG + chr1_3:38448664-38448683 Msa0117500:CDS 45.0%
CTAGAAGCAGAACCATGTCT+AGG - chr1_3:38448679-38448698 None:intergenic 45.0%
!! GCTTCTAGTTCTGCTATGGA+TGG + chr1_3:38448691-38448710 Msa0117500:CDS 45.0%
TGTTGGAGAAAAGACCAGCA+GGG - chr1_3:38448807-38448826 None:intergenic 45.0%
ATGTTGGAGAAAAGACCAGC+AGG - chr1_3:38448808-38448827 None:intergenic 45.0%
ATTAGTCGCCTACCATTGGT+GGG - chr1_3:38448920-38448939 None:intergenic 45.0%
CCAAACCAAACCAAGTTGCT+TGG - chr1_3:38449050-38449069 None:intergenic 45.0%
!! CCAAGCAACTTGGTTTGGTT+TGG + chr1_3:38449047-38449066 Msa0117500:intron 45.0%
GCTCATGTAGGGTGACAAAA+AGG - chr1_3:38449654-38449673 None:intergenic 45.0%
AGTACAAGTTCGTGGTTCTC+TGG + chr1_3:38449737-38449756 Msa0117500:CDS 45.0%
TGATATCCCACCTGCATCTT+AGG + chr1_3:38450008-38450027 Msa0117500:intron 45.0%
!! TTTTCTGCCATGAAAGGCGT+TGG + chr1_3:38450107-38450126 Msa0117500:CDS 45.0%
GGAAACTATGCCACGGTAAA+TGG + chr1_3:38450128-38450147 Msa0117500:CDS 45.0%
GCCACGGTAAATGGTAGTAA+CGG + chr1_3:38450137-38450156 Msa0117500:CDS 45.0%
GATTCTACTCACTATGGCTC+TGG + chr1_3:38450308-38450327 Msa0117500:CDS 45.0%
CTGGATTCCCCTATAGTTCT+TGG + chr1_3:38450327-38450346 Msa0117500:CDS 45.0%
! TGTTTTACTCATCAGCGTGG+AGG + chr1_3:38450509-38450528 Msa0117500:intron 45.0%
! GTTTTACTCATCAGCGTGGA+GGG + chr1_3:38450510-38450529 Msa0117500:intron 45.0%
! GCAAGAGCTTGTTCCAAACA+TGG + chr1_3:38450895-38450914 Msa0117500:CDS 45.0%
TCCCACCCTTACAAGTGAAA+CGG + chr1_3:38451152-38451171 Msa0117500:intron 45.0%
TCCGTTTCACTTGTAAGGGT+GGG - chr1_3:38451156-38451175 None:intergenic 45.0%
TTCCGTTTCACTTGTAAGGG+TGG - chr1_3:38451157-38451176 None:intergenic 45.0%
TTATAGACGTGGCAGTGTTG+TGG - chr1_3:38451270-38451289 None:intergenic 45.0%
!!! TATTTATTTTACTTTATTTT+TGG + chr1_3:38448875-38448894 Msa0117500:intron 5.0%
GTTGGAGAAAAGACCAGCAG+GGG - chr1_3:38448806-38448825 None:intergenic 50.0%
! ATTGGTTTCCGACCCACCAA+TGG + chr1_3:38448905-38448924 Msa0117500:intron 50.0%
! GATTAGTCGCCTACCATTGG+TGG - chr1_3:38448921-38448940 None:intergenic 50.0%
CCAATGGTAGGCGACTAATC+CGG + chr1_3:38448921-38448940 Msa0117500:intron 50.0%
TTCCCACTGGGAATCGAACT+CGG + chr1_3:38448980-38448999 Msa0117500:CDS 50.0%
TACCGAGTTCGATTCCCAGT+GGG - chr1_3:38448985-38449004 None:intergenic 50.0%
ATACCGAGTTCGATTCCCAG+TGG - chr1_3:38448986-38449005 None:intergenic 50.0%
GAATCGAACTCGGTATTCCC+CGG + chr1_3:38448990-38449009 Msa0117500:CDS 50.0%
AATCGAACTCGGTATTCCCC+GGG + chr1_3:38448991-38449010 Msa0117500:CDS 50.0%
TGAGCCCAAGCAACTTGGTT+TGG + chr1_3:38449042-38449061 Msa0117500:CDS 50.0%
GGTATGCGAGTACAAGTTCG+TGG + chr1_3:38449729-38449748 Msa0117500:CDS 50.0%
TCGTGGTTCTCTGGTGAATG+CGG + chr1_3:38449746-38449765 Msa0117500:intron 50.0%
! GCAGGGTTTTCTGCCATGAA+AGG + chr1_3:38450101-38450120 Msa0117500:intron 50.0%
!! AGGCGTTGGAAACTATGCCA+CGG + chr1_3:38450121-38450140 Msa0117500:CDS 50.0%
GCCGTTACTACCATTTACCG+TGG - chr1_3:38450141-38450160 None:intergenic 50.0%
GAAGCAACTAGCCCTGATGA+CGG + chr1_3:38450272-38450291 Msa0117500:CDS 50.0%
GTTTCCGACCCACCAATGGT+AGG + chr1_3:38448909-38448928 Msa0117500:intron 55.0%
!! CCGGATTAGTCGCCTACCAT+TGG - chr1_3:38448924-38448943 None:intergenic 55.0%
CTAATCCGGCTAGTGCGTAG+AGG + chr1_3:38448935-38448954 Msa0117500:intron 55.0%
TTCCCAGTGGGAACAACGCT+TGG - chr1_3:38448973-38448992 None:intergenic 55.0%
ACCAAGTTGCTTGGGCTCAG+TGG - chr1_3:38449041-38449060 None:intergenic 55.0%
CGTTGCTACCTCCGTCATCA+GGG - chr1_3:38450286-38450305 None:intergenic 55.0%
!! CCTGATGACGGAGGTAGCAA+CGG + chr1_3:38450284-38450303 Msa0117500:CDS 55.0%
!! ATCCTCGAAGCATTGCCGAG+AGG + chr1_3:38450672-38450691 Msa0117500:CDS 55.0%
!! TCCTCGAAGCATTGCCGAGA+GGG + chr1_3:38450673-38450692 Msa0117500:CDS 55.0%
AGACAGGGTAGTTCCCCTGC+TGG + chr1_3:38448790-38448809 Msa0117500:CDS 60.0%
! GTCGCCTACCATTGGTGGGT+CGG - chr1_3:38448916-38448935 None:intergenic 60.0%
GCATGCCTCTACGCACTAGC+CGG - chr1_3:38448943-38448962 None:intergenic 60.0%
! TGGCCAAGCGTTGTTCCCAC+TGG + chr1_3:38448967-38448986 Msa0117500:CDS 60.0%
! GGCCAAGCGTTGTTCCCACT+GGG + chr1_3:38448968-38448987 Msa0117500:CDS 60.0%
GTATTCCCCGGGAACGTCCT+TGG + chr1_3:38449002-38449021 Msa0117500:CDS 60.0%
TCCTTCCAAGGACGTTCCCG+GGG - chr1_3:38449010-38449029 None:intergenic 60.0%
CTCCTTCCAAGGACGTTCCC+GGG - chr1_3:38449011-38449030 None:intergenic 60.0%
GCTCCTTCCAAGGACGTTCC+CGG - chr1_3:38449012-38449031 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG - chr1_3:38449022-38449041 None:intergenic 60.0%
GTTGCTTGGGCTCAGTGGCA+AGG - chr1_3:38449036-38449055 None:intergenic 60.0%
GCCACTGAGCCCAAGCAACT+TGG + chr1_3:38449037-38449056 Msa0117500:CDS 60.0%
!! GCAACTAGCCCTGATGACGG+AGG + chr1_3:38450275-38450294 Msa0117500:CDS 60.0%
CCGTTGCTACCTCCGTCATC+AGG - chr1_3:38450287-38450306 None:intergenic 60.0%
ACTCATCAGCGTGGAGGGCT+TGG + chr1_3:38450515-38450534 Msa0117500:intron 60.0%
ACCCTCTCGGCAATGCTTCG+AGG - chr1_3:38450677-38450696 None:intergenic 60.0%
! GTGCGTAGAGGCATGCGCAC+TGG + chr1_3:38448947-38448966 Msa0117500:intron 65.0%
TCCCCGGGAACGTCCTTGGA+AGG + chr1_3:38449006-38449025 Msa0117500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 38448052 38451908 38448052 ID=Msa0117500;Name=Msa0117500
chr1_3 mRNA 38448052 38451908 38448052 ID=Msa0117500-mRNA-1;Parent=Msa0117500;Name=Msa0117500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=366|0.57|0.75|0.75|1|1|8|273|435
chr1_3 exon 38448052 38448841 38448052 ID=Msa0117500-mRNA-1:exon:12012;Parent=Msa0117500-mRNA-1
chr1_3 exon 38448948 38449063 38448948 ID=Msa0117500-mRNA-1:exon:12013;Parent=Msa0117500-mRNA-1
chr1_3 exon 38449698 38449758 38449698 ID=Msa0117500-mRNA-1:exon:12014;Parent=Msa0117500-mRNA-1
chr1_3 exon 38450105 38450433 38450105 ID=Msa0117500-mRNA-1:exon:12015;Parent=Msa0117500-mRNA-1
chr1_3 exon 38450524 38450694 38450524 ID=Msa0117500-mRNA-1:exon:12016;Parent=Msa0117500-mRNA-1
chr1_3 exon 38450857 38450922 38450857 ID=Msa0117500-mRNA-1:exon:12017;Parent=Msa0117500-mRNA-1
chr1_3 exon 38451044 38451112 38451044 ID=Msa0117500-mRNA-1:exon:12018;Parent=Msa0117500-mRNA-1
chr1_3 exon 38451564 38451908 38451564 ID=Msa0117500-mRNA-1:exon:12019;Parent=Msa0117500-mRNA-1
chr1_3 five_prime_UTR 38448052 38448417 38448052 ID=Msa0117500-mRNA-1:five_prime_utr;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38448418 38448841 38448418 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38448948 38449063 38448948 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38449698 38449758 38449698 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38450105 38450433 38450105 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38450524 38450694 38450524 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38450857 38450922 38450857 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38451044 38451112 38451044 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 CDS 38451564 38451635 38451564 ID=Msa0117500-mRNA-1:cds;Parent=Msa0117500-mRNA-1
chr1_3 three_prime_UTR 38451636 38451908 38451636 ID=Msa0117500-mRNA-1:three_prime_utr;Parent=Msa0117500-mRNA-1
Gene Sequence

>Msa0117500

ATGGATTCTAATACTCATCAACAACAGAACCAATCCAATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTGTTTCAAAATCTCACACCTTCTTTTCCTTCTTCTGGTGATTCTAATAAAGTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATAATAATATTTCTGGTTCATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGCTGGTTTGCCACCTCATTATCCTAGACATGGTTCTGCTTCTAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATCACATGATAAGAATTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGTGCGTAGAGGCATGCGCACTGGCCAAGCGTTGTTCCCACTGGGAATCGAACTCGGTATTCCCCGGGAACGTCCTTGGAAGGAGCTCCTTGCCACTGAGCCCAAGCAACTTGGTTTGGACGAACCAATTCGCAAAAGTACTGAGAGTTGGTATGCGAGTACAAGTTCGTGGTTCTCTGGGTTTTCTGCCATGAAAGGCGTTGGAAACTATGCCACGGTAAATGGTAGTAACGGCGAACTTAGTCCGTCTATTAACCGATTGAACACTCAGGTTACCTTCCCTTCAAGAAATGCTTCTTCCTTGGGAATATTGTCACATATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAACGGTGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGATACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCAGTAACGAAAAAATGTTTTCTGATATTCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCGAACACGTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAATACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGATAAACGAGCAAACTGCAAATGTATGAGGATGCAGAAGGCAGATACAAATCAAATTACTTGA
Protein sequence

>Msa0117500

MDSNTHQQQNQSNSSGLLRFRSAPSSLFQNLTPSFPSSGDSNKVTKHFWDGSESERFVSNDNNNISGSSCSKEMNSGYGAGLPPHYPRHGSASSSAMDGSFGLVGSLGMDQETSHDKNFGSNLLRQGSSPAGLFSNISFQNVRRGMRTGQALFPLGIELGIPRERPWKELLATEPKQLGLDEPIRKSTESWYASTSSWFSGFSAMKGVGNYATVNGSNGELSPSINRLNTQVTFPSRNASSLGILSHISEIDSEDIEATSPDDGGSNGDSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDIQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQKADTNQIT*