AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1421980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421980 MtrunA17_Chr1g0174271 73.077 442 48 8 2 435 4 382 0.0 597
Msa1421980 MtrunA17_Chr7g0258181 53.913 230 77 3 197 423 112 315 3.30e-69 222
Msa1421980 MtrunA17_Chr4g0032951 49.793 241 100 8 200 428 201 432 6.77e-65 214
Msa1421980 MtrunA17_Chr2g0329041 50.213 235 101 6 201 428 183 408 1.00e-63 211
Msa1421980 MtrunA17_Chr3g0087771 44.878 205 100 4 229 428 203 399 8.33e-44 158
Msa1421980 MtrunA17_Chr8g0351881 41.423 239 121 5 193 423 161 388 7.13e-38 141
Msa1421980 MtrunA17_Chr4g0014771 69.663 89 25 1 335 423 104 190 3.55e-37 134
Msa1421980 MtrunA17_Chr1g0213791 62.617 107 37 2 318 423 233 337 4.72e-36 135
Msa1421980 MtrunA17_Chr4g0074161 59.420 69 27 1 350 418 205 272 1.52e-17 84.3
Msa1421980 MtrunA17_Chr1g0190731 53.333 75 34 1 344 418 186 259 1.90e-16 80.5
Msa1421980 MtrunA17_Chr1g0152131 53.425 73 34 0 349 421 258 330 2.49e-16 80.5
Msa1421980 MtrunA17_Chr3g0131771 56.716 67 29 0 351 417 147 213 1.61e-15 77.4
Msa1421980 MtrunA17_Chr5g0421111 53.521 71 33 0 351 421 365 435 3.97e-15 77.4
Msa1421980 MtrunA17_Chr3g0144641 55.072 69 31 0 351 419 191 259 4.75e-15 76.6
Msa1421980 MtrunA17_Chr7g0234761 53.623 69 32 0 351 419 317 385 9.13e-15 76.3
Msa1421980 MtrunA17_Chr8g0365941 53.623 69 32 0 351 419 305 373 1.13e-14 75.9
Msa1421980 MtrunA17_Chr8g0339091 53.731 67 31 0 351 417 291 357 2.14e-14 75.1
Msa1421980 MtrunA17_Chr4g0035101 50.000 76 36 1 344 419 138 211 2.61e-14 73.9
Msa1421980 MtrunA17_Chr8g0385911 52.174 69 33 0 351 419 145 213 3.60e-14 73.2
Msa1421980 MtrunA17_Chr8g0363921 50.746 67 33 0 351 417 151 217 1.98e-13 70.5
Msa1421980 MtrunA17_Chr5g0415291 49.254 67 34 0 351 417 112 178 2.39e-12 66.6
Msa1421980 MtrunA17_Chr7g0258161 45.070 71 39 0 349 419 171 241 6.96e-12 66.6
Msa1421980 MtrunA17_Chr1g0152651 54.545 66 29 1 350 415 273 337 9.49e-12 66.2
Msa1421980 MtrunA17_Chr3g0134741 54.545 66 29 1 350 415 228 292 1.38e-11 65.5
Msa1421980 MtrunA17_Chr1g0174161 43.662 71 40 0 349 419 158 228 2.19e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1421980 AT2G42280.1 52.778 252 94 4 182 428 125 356 2.11e-72 232
Msa1421980 AT2G42280.1 35.758 165 78 4 1 147 1 155 4.30e-15 76.6
Msa1421980 AT2G42280.3 52.119 236 88 4 182 412 125 340 1.39e-63 209
Msa1421980 AT2G42280.3 35.758 165 78 4 1 147 1 155 3.60e-15 77.0
Msa1421980 AT1G51140.1 32.644 435 203 16 6 423 15 376 3.25e-44 159
Msa1421980 AT1G35460.1 68.966 87 25 1 337 423 169 253 3.22e-38 139
Msa1421980 AT1G05805.1 39.095 243 114 9 185 423 143 355 2.24e-37 140
Msa1421980 AT2G43140.1 62.857 105 38 1 320 423 102 206 2.61e-37 135
Msa1421980 AT2G43140.2 60.909 110 42 1 320 428 199 308 8.30e-37 137
Msa1421980 AT4G09180.1 65.909 88 28 1 337 424 172 257 1.44e-34 129
Msa1421980 AT2G42280.2 43.229 192 84 4 182 368 125 296 2.12e-32 125
Msa1421980 AT2G42280.2 35.758 165 78 4 1 147 1 155 4.45e-15 75.9
Msa1421980 AT1G35460.2 79.245 53 9 1 337 389 169 219 5.01e-23 97.4
Msa1421980 AT2G24260.2 60.870 69 26 1 350 418 34 101 2.03e-18 84.7
Msa1421980 AT2G24260.1 60.870 69 26 1 350 418 137 204 8.53e-18 84.7
Msa1421980 AT4G30980.1 59.420 69 27 1 350 418 129 196 1.93e-17 83.2
Msa1421980 AT4G30980.2 57.333 75 30 2 344 418 172 244 3.72e-17 82.8
Msa1421980 AT5G58010.1 55.072 69 30 1 350 418 98 165 1.54e-16 80.5
Msa1421980 AT4G34530.1 56.522 69 30 0 351 419 172 240 6.06e-16 79.0
Msa1421980 AT1G10120.2 54.930 71 32 0 351 421 206 276 1.53e-15 78.2
Msa1421980 AT1G10120.1 54.930 71 32 0 351 421 206 276 1.53e-15 78.2
Msa1421980 AT5G50915.3 56.716 67 29 0 351 417 136 202 2.06e-15 76.6
Msa1421980 AT5G50915.4 56.716 67 29 0 351 417 136 202 2.06e-15 76.6
Msa1421980 AT5G50915.1 56.716 67 29 0 351 417 136 202 2.62e-15 76.6
Msa1421980 AT5G50915.2 56.716 67 29 0 351 417 136 202 2.62e-15 76.6
Msa1421980 AT1G68920.3 52.113 71 34 0 351 421 302 372 6.58e-15 77.0
Msa1421980 AT1G68920.1 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa1421980 AT1G68920.4 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa1421980 AT1G68920.2 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa1421980 AT1G25330.1 45.055 91 48 2 342 431 96 185 9.36e-15 73.6
Msa1421980 AT1G26260.5 55.224 67 30 0 351 417 201 267 2.71e-14 74.3
Msa1421980 AT3G07340.2 53.731 67 31 0 351 417 258 324 2.92e-14 74.7
Msa1421980 AT1G26260.4 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa1421980 AT1G26260.1 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa1421980 AT1G26260.6 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa1421980 AT1G26260.2 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa1421980 AT3G07340.1 53.731 67 31 0 351 417 258 324 3.32e-14 74.7
Msa1421980 AT1G26260.3 55.224 67 30 0 351 417 172 238 3.37e-14 73.9
Msa1421980 AT5G48560.1 47.368 76 40 0 351 426 301 376 4.37e-14 74.3
Msa1421980 AT5G48560.2 47.368 76 40 0 351 426 301 376 4.74e-14 74.3
Msa1421980 AT3G23690.1 50.725 69 34 0 351 419 191 259 2.78e-13 71.2
Msa1421980 AT1G59640.1 50.746 67 33 0 351 417 136 202 4.57e-13 69.7
Msa1421980 AT2G42300.4 46.053 76 40 1 345 419 178 253 6.09e-13 69.3
Msa1421980 AT2G42300.1 46.053 76 40 1 345 419 178 253 6.51e-13 69.7
Msa1421980 AT1G18400.2 47.826 69 36 0 349 417 143 211 7.05e-13 68.6
Msa1421980 AT1G73830.2 49.254 67 34 0 351 417 147 213 8.93e-13 68.6
Msa1421980 AT1G18400.1 47.826 69 36 0 349 417 143 211 9.89e-13 68.6
Msa1421980 AT1G73830.1 49.254 67 34 0 351 417 147 213 9.93e-13 68.6
Msa1421980 AT2G18300.2 47.826 69 36 0 351 419 185 253 1.26e-12 68.9
Msa1421980 AT2G18300.1 47.826 69 36 0 351 419 185 253 1.26e-12 68.9
Msa1421980 AT4G36540.2 45.455 77 40 1 341 417 133 207 1.38e-12 68.6
Msa1421980 AT4G36540.1 45.455 77 40 1 341 417 133 207 1.39e-12 68.6
Msa1421980 AT1G59640.2 50.746 67 33 0 351 417 136 202 1.82e-12 68.6
Msa1421980 AT2G18300.3 47.826 69 36 0 351 419 185 253 1.86e-12 68.9
Msa1421980 AT3G57800.2 46.479 71 38 0 349 419 202 272 1.88e-12 68.9
Msa1421980 AT1G27740.1 52.857 70 32 1 346 415 162 230 8.92e-12 65.5
Msa1421980 AT2G14760.1 54.545 66 29 1 350 415 236 300 1.21e-11 66.2
Msa1421980 AT4G33880.1 54.545 66 29 1 350 415 265 329 1.37e-11 66.2
Msa1421980 AT5G62610.2 46.269 67 36 0 351 417 153 219 2.19e-11 64.7
Msa1421980 AT5G62610.1 46.269 67 36 0 351 417 153 219 2.19e-11 64.7

Find 120 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGATAATAATAATATTTC+TGG 0.136535 tig0025319:+44068 Msa1421980:CDS
ACATCACATGATAAGAATTT+TGG 0.193728 tig0025319:+44227 Msa1421980:CDS
TCTGCTATGGATGGTTCTTT+TGG 0.221242 tig0025319:+44173 Msa1421980:CDS
GGAAACTATGCCACGGTAAA+TGG 0.245415 tig0025319:+45601 Msa1421980:CDS
TACAGTAACATTATTTATAA+TGG 0.246127 tig0025319:+43872 Msa1421980:exon
GACCTACATGCTTTGAATTC+AGG 0.246604 tig0025319:-47180 None:intergenic
CAGAACCAATCCAATTCTTC+TGG 0.250255 tig0025319:+43915 Msa1421980:CDS
TTAAGAGTAAAACATTTATT+AGG 0.250342 tig0025319:-47305 None:intergenic
AAAGATAGGGATAAATAAAA+AGG 0.251395 tig0025319:-43623 None:intergenic
TGTTCTAAGGAAATGAATTC+TGG 0.257572 tig0025319:+44098 Msa1421980:CDS
TCCAACATTTCCTTTCAAAA+TGG 0.262412 tig0025319:+44293 Msa1421980:CDS
CTGGATTCCCCTATAGTTCT+TGG 0.264196 tig0025319:+45800 Msa1421980:CDS
TTCTGGTTCATCTTGTTCTA+AGG 0.264253 tig0025319:+44085 Msa1421980:CDS
CCAATATAGATTAATACTAT+TGG 0.266205 tig0025319:-47262 None:intergenic
TGAAAGGGACAAGGAAAGAT+AGG 0.311528 tig0025319:-43637 None:intergenic
CCAATAGTATTAATCTATAT+TGG 0.322787 tig0025319:+47262 Msa1421980:three_prime_UTR
ATTTGTACCTTATCCATGTT+TGG 0.331656 tig0025319:-46381 None:intergenic
TTTGGATTGGTTGGTTCATT+GGG 0.337311 tig0025319:+44191 Msa1421980:CDS
AGTATCGTTCCAAGAACTAT+AGG 0.348915 tig0025319:-45809 None:intergenic
TCAAGAAATGCTTCTTCCTT+GGG 0.356423 tig0025319:+45682 Msa1421980:CDS
ACGAAGCAACCCAGAAGAAT+TGG 0.359803 tig0025319:-43925 None:intergenic
TTCAAGAAATGCTTCTTCCT+TGG 0.367694 tig0025319:+45681 Msa1421980:CDS
CCGTTGCTACCTCCGTCATC+AGG 0.377114 tig0025319:-45757 None:intergenic
GCTCCTTCCAAGGACGTTCC+CGG 0.380905 tig0025319:-44482 None:intergenic
ACTCATCAGCGTGGAGGGCT+TGG 0.396464 tig0025319:+45988 Msa1421980:intron
GTTTGCTCGTTTATCACTTA+GGG 0.399495 tig0025319:-47038 None:intergenic
GTATCGTTCCAAGAACTATA+GGG 0.399539 tig0025319:-45808 None:intergenic
AAGGAAATGAATTCTGGTTA+TGG 0.401146 tig0025319:+44104 Msa1421980:CDS
TGAGCCCAAGCAACTTGGTT+TGG 0.405304 tig0025319:+44515 Msa1421980:CDS
ACCTACATGCTTTGAATTCA+GGG 0.417455 tig0025319:-47179 None:intergenic
ATTGGTTGGTTCATTGGGAA+TGG 0.419938 tig0025319:+44196 Msa1421980:CDS
ATAGTTTCCAACGCCTTTCA+TGG 0.421587 tig0025319:-45587 None:intergenic
TGGTTCAAATCTTCTTAGAC+AGG 0.423641 tig0025319:+44247 Msa1421980:CDS
ATGAATTCTGGTTATGGTGC+TGG 0.434475 tig0025319:+44110 Msa1421980:CDS
TGGCCAAGCGTTGTTCCCAC+TGG 0.434491 tig0025319:+44440 Msa1421980:CDS
GTATTCCCCGGGAACGTCCT+TGG 0.436340 tig0025319:+44475 Msa1421980:CDS
CTCCTTCCAAGGACGTTCCC+GGG 0.439117 tig0025319:-44481 None:intergenic
GCTTCTAGTTCTGCTATGGA+TGG 0.439803 tig0025319:+44164 Msa1421980:CDS
CAAGAGAACAAAACAAAAGT+AGG 0.444303 tig0025319:-43746 None:intergenic
AACGGTGATTCTACTCACTA+TGG 0.453244 tig0025319:+45775 Msa1421980:CDS
AGTTTGCTCGTTTATCACTT+AGG 0.455813 tig0025319:-47039 None:intergenic
TTCCCAGTGGGAACAACGCT+TGG 0.461024 tig0025319:-44443 None:intergenic
TTCTGCTTCTAGTTCTGCTA+TGG 0.461461 tig0025319:+44160 Msa1421980:CDS
GTGCGTAGAGGCATGCGCAC+TGG 0.462431 tig0025319:+44420 Msa1421980:intron
GATTCTACTCACTATGGCTC+TGG 0.464368 tig0025319:+45781 Msa1421980:CDS
AGTACAAGTTCGTGGTTCTC+TGG 0.465344 tig0025319:+45210 Msa1421980:CDS
ACCCTCTCGGCAATGCTTCG+AGG 0.468775 tig0025319:-46147 None:intergenic
AAAGTTTCTTTAGATTAAAG+TGG 0.471862 tig0025319:+47216 Msa1421980:three_prime_UTR
GCCACTGAGCCCAAGCAACT+TGG 0.472170 tig0025319:+44510 Msa1421980:CDS
CCAAACCAAACCAAGTTGCT+TGG 0.472419 tig0025319:-44520 None:intergenic
AAGGAAGAAGCATTTCTTGA+AGG 0.479751 tig0025319:-45679 None:intergenic
TCCTCGAAGCATTGCCGAGA+GGG 0.481258 tig0025319:+46146 Msa1421980:CDS
TGTAAAATTCGAGCGAAAAG+AGG 0.493630 tig0025319:+46111 Msa1421980:CDS
GCTTGTTCCAAACATGGATA+AGG 0.495622 tig0025319:+46374 Msa1421980:CDS
TCACCAGAAGAAGGAAAAGA+AGG 0.496661 tig0025319:-43987 None:intergenic
CAGAGAGAGATCAAAGTGAA+AGG 0.499422 tig0025319:-43653 None:intergenic
AGAACCAATCCAATTCTTCT+GGG 0.502541 tig0025319:+43916 Msa1421980:CDS
AGAGAGAGATCAAAGTGAAA+GGG 0.505286 tig0025319:-43652 None:intergenic
CAAACCAAACCAAGTTGCTT+GGG 0.506840 tig0025319:-44519 None:intergenic
AGGAAGAAGCATTTCTTGAA+GGG 0.507126 tig0025319:-45678 None:intergenic
ATGTTGGAGAAAAGACCAGC+AGG 0.517169 tig0025319:-44278 None:intergenic
ATCTCAGTGGTTTGAAAAGA+GGG 0.517303 tig0025319:+45848 Msa1421980:CDS
ATCATCTCAGATGACGTGTT+CGG 0.518952 tig0025319:-46048 None:intergenic
TTCAGCTTAGGAACAAAGCA+GGG 0.521484 tig0025319:-43794 None:intergenic
TTTCAGCTTAGGAACAAAGC+AGG 0.524207 tig0025319:-43795 None:intergenic
AATCTCAGTGGTTTGAAAAG+AGG 0.526692 tig0025319:+45847 Msa1421980:CDS
CCACCTCATTATCCTAGACA+TGG 0.529372 tig0025319:+44137 Msa1421980:CDS
AGGTAACCTGAGTGTTCAAT+CGG 0.530212 tig0025319:-45654 None:intergenic
TTATTAGAATCACCAGAAGA+AGG 0.532913 tig0025319:-43996 None:intergenic
AGAAGCATTTCTTGAAGGGA+AGG 0.535438 tig0025319:-45674 None:intergenic
AACTAATACATCAGACATGT+TGG 0.535882 tig0025319:+46519 Msa1421980:CDS
GAAAGGGACAAGGAAAGATA+GGG 0.536386 tig0025319:-43636 None:intergenic
AGACAGGGTAGTTCCCCTGC+TGG 0.543236 tig0025319:+44263 Msa1421980:CDS
GCAACCCAGAAGAATTGGAT+TGG 0.543641 tig0025319:-43920 None:intergenic
AAGAAGAGAAGAGGTGGCTA+TGG 0.548362 tig0025319:-43704 None:intergenic
GCAAGAGCTTGTTCCAAACA+TGG 0.548846 tig0025319:+46368 Msa1421980:CDS
GGCCAAGCGTTGTTCCCACT+GGG 0.553114 tig0025319:+44441 Msa1421980:CDS
TACATCAGACATGTTGGACT+TGG 0.558173 tig0025319:+46525 Msa1421980:CDS
GAATCGAACTCGGTATTCCC+CGG 0.558333 tig0025319:+44463 Msa1421980:CDS
CTAAGATCAGTGAAAGAATG+AGG 0.559063 tig0025319:+46340 Msa1421980:CDS
TTCCCACTGGGAATCGAACT+CGG 0.563385 tig0025319:+44453 Msa1421980:CDS
CGCAATTCAAAGAAGAGAAG+AGG 0.564503 tig0025319:-43713 None:intergenic
CGTTGCTACCTCCGTCATCA+GGG 0.572371 tig0025319:-45756 None:intergenic
CTAGAAGCAGAACCATGTCT+AGG 0.577677 tig0025319:-44149 None:intergenic
GAGCAAACTGCAAATGTATG+AGG 0.578835 tig0025319:+47053 Msa1421980:CDS
TCCCCGGGAACGTCCTTGGA+AGG 0.580649 tig0025319:+44479 Msa1421980:CDS
ACCAAGTTGCTTGGGCTCAG+TGG 0.586686 tig0025319:-44511 None:intergenic
TTCGCAAAAGTACTGAGAGT+TGG 0.587857 tig0025319:+45181 Msa1421980:CDS
GTTGCTTGGGCTCAGTGGCA+AGG 0.590030 tig0025319:-44506 None:intergenic
GTGGCAAGGAGCTCCTTCCA+AGG 0.591784 tig0025319:-44492 None:intergenic
GGTATGCGAGTACAAGTTCG+TGG 0.592023 tig0025319:+45202 Msa1421980:CDS
AATCGAACTCGGTATTCCCC+GGG 0.593437 tig0025319:+44464 Msa1421980:CDS
GAACCATGTCTAGGATAATG+AGG 0.594617 tig0025319:-44140 None:intergenic
GTCATCTGAGATGATTGCTA+TGG 0.594714 tig0025319:+46056 Msa1421980:CDS
AGATCAAAGTGAAAGGGACA+AGG 0.595140 tig0025319:-43646 None:intergenic
TAAACAAAATCATACCCTCT+CGG 0.600646 tig0025319:-46160 None:intergenic
CCTGATGACGGAGGTAGCAA+CGG 0.614696 tig0025319:+45757 Msa1421980:CDS
TATCGTTCCAAGAACTATAG+GGG 0.622302 tig0025319:-45807 None:intergenic
TCCTTCCAAGGACGTTCCCG+GGG 0.622327 tig0025319:-44480 None:intergenic
GGTTCAAATCTTCTTAGACA+GGG 0.631058 tig0025319:+44248 Msa1421980:CDS
GAAGCAACTAGCCCTGATGA+CGG 0.637823 tig0025319:+45745 Msa1421980:CDS
TATCTCTGAAATAGATAGCG+AGG 0.637851 tig0025319:+45717 Msa1421980:CDS
GTGTTCAATCGGTTAATAGA+CGG 0.638059 tig0025319:-45643 None:intergenic
TGTTGGAGAAAAGACCAGCA+GGG 0.641864 tig0025319:-44277 None:intergenic
GTCGTTACTACCATTTACCG+TGG 0.643365 tig0025319:-45611 None:intergenic
GATATGTGACAATATTCCCA+AGG 0.645646 tig0025319:-45698 None:intergenic
TACCGAGTTCGATTCCCAGT+GGG 0.652274 tig0025319:-44455 None:intergenic
AATTCAAAGAAGAGAAGAGG+TGG 0.659106 tig0025319:-43710 None:intergenic
ACCCTGAATTCAAAGCATGT+AGG 0.668934 tig0025319:+47178 Msa1421980:three_prime_UTR
TATTAACCGATTGAACACTC+AGG 0.669123 tig0025319:+45648 Msa1421980:CDS
TCAGCTTAGGAACAAAGCAG+GGG 0.671703 tig0025319:-43793 None:intergenic
CTAATCCGGCTAGTGCGTAG+AGG 0.675720 tig0025319:+44408 Msa1421980:intron
GTTGGAGAAAAGACCAGCAG+GGG 0.676212 tig0025319:-44276 None:intergenic
AGGCGTTGGAAACTATGCCA+CGG 0.680755 tig0025319:+45594 Msa1421980:CDS
ATCCTCGAAGCATTGCCGAG+AGG 0.702830 tig0025319:+46145 Msa1421980:CDS
CAAATGTATGAGGATGCAGA+AGG 0.707448 tig0025319:+47063 Msa1421980:CDS
GCAACTAGCCCTGATGACGG+AGG 0.713476 tig0025319:+45748 Msa1421980:CDS
CCATGTCTAGGATAATGAGG+TGG 0.720480 tig0025319:-44137 None:intergenic
TCATTCACAGAAAATCTCAG+TGG 0.729969 tig0025319:+45835 Msa1421980:CDS
ATACCGAGTTCGATTCCCAG+TGG 0.745051 tig0025319:-44456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTAATTAA+TGG + tig0025319:46446-46465 Msa1421980:intron 0.0%
!! AAAAAAAAAAATGATTATGA+TGG + tig0025319:44872-44891 Msa1421980:intron 10.0%
!!! AAGTTATATTTTTCATTAAT+AGG + tig0025319:45044-45063 Msa1421980:intron 10.0%
!! TACAGTAACATTATTTATAA+TGG + tig0025319:43872-43891 Msa1421980:exon 15.0%
!!! ATAAAGTTACTAAACATTTT+TGG + tig0025319:44015-44034 Msa1421980:CDS 15.0%
!!! TAAAGTTACTAAACATTTTT+GGG + tig0025319:44016-44035 Msa1421980:CDS 15.0%
!! AACGATAATAATAATATTTC+TGG + tig0025319:44068-44087 Msa1421980:CDS 15.0%
!!! TATGTTTTATGTTGTTATTT+TGG + tig0025319:44319-44338 Msa1421980:intron 15.0%
!! ATTTATTGAATGAATCTAAA+AGG - tig0025319:45314-45333 None:intergenic 15.0%
!! TATATACAATTCATTCTTAA+TGG + tig0025319:45526-45545 Msa1421980:intron 15.0%
!! ATTTATGAAATTATAACCAT+CGG - tig0025319:46936-46955 None:intergenic 15.0%
!!! TATATTGGTAATTTTGTATA+GGG + tig0025319:47277-47296 Msa1421980:three_prime_UTR 15.0%
!! TTAAGAGTAAAACATTTATT+AGG - tig0025319:47308-47327 None:intergenic 15.0%
!!! TTTTCAAAAGCAAATCTAAA+AGG + tig0025319:43395-43414 Msa1421980:five_prime_UTR 20.0%
!!! TTCTTATTTGTCAAAAACAA+TGG - tig0025319:43509-43528 None:intergenic 20.0%
!! AAGATAGGGATAAATAAAAA+GGG - tig0025319:43625-43644 None:intergenic 20.0%
!! AAAGATAGGGATAAATAAAA+AGG - tig0025319:43626-43645 None:intergenic 20.0%
!! TTACTGTAAAAAGATGAAAA+GGG - tig0025319:43860-43879 None:intergenic 20.0%
!!! AAACATATTACCATTTTGAA+AGG - tig0025319:44306-44325 None:intergenic 20.0%
!!! TTTATGTTGTTATTTTGGTT+TGG + tig0025319:44324-44343 Msa1421980:intron 20.0%
!! TATGAGTAATGATATTAATG+AGG + tig0025319:44623-44642 Msa1421980:intron 20.0%
!!! TATGAATGATTTTTTGTTGT+AGG + tig0025319:44691-44710 Msa1421980:intron 20.0%
!!! ATGAATGATTTTTTGTTGTA+GGG + tig0025319:44692-44711 Msa1421980:intron 20.0%
!!! TTAATGTTGTTTTAGTTTTC+TGG + tig0025319:44731-44750 Msa1421980:intron 20.0%
!! GAATTTAATGATTCAATTTG+TGG + tig0025319:44927-44946 Msa1421980:intron 20.0%
!!! TTTTCATTAATAGGATATGA+AGG + tig0025319:45053-45072 Msa1421980:intron 20.0%
!! TTTCATTAATAGGATATGAA+GGG + tig0025319:45054-45073 Msa1421980:intron 20.0%
!!! AAAAATGTTTTCTGATATTC+AGG + tig0025319:45885-45904 Msa1421980:CDS 20.0%
!! AAATCTTCAAAAACAATTCA+AGG + tig0025319:46564-46583 Msa1421980:CDS 20.0%
!! TTGCTAATTCATAAAAGTTA+TGG - tig0025319:46691-46710 None:intergenic 20.0%
!! TAATAGCTAAACTTAATTCA+GGG + tig0025319:46900-46919 Msa1421980:intron 20.0%
!! AAAGTTTCTTTAGATTAAAG+TGG + tig0025319:47216-47235 Msa1421980:three_prime_UTR 20.0%
!! CCAATATAGATTAATACTAT+TGG - tig0025319:47265-47284 None:intergenic 20.0%
!! CCAATAGTATTAATCTATAT+TGG + tig0025319:47262-47281 Msa1421980:three_prime_UTR 20.0%
!!! CTATATTGGTAATTTTGTAT+AGG + tig0025319:47276-47295 Msa1421980:three_prime_UTR 20.0%
!!! ATATTGGTAATTTTGTATAG+GGG + tig0025319:47278-47297 Msa1421980:three_prime_UTR 20.0%
! AATAAGAAGTGAGAAAAACA+AGG + tig0025319:43521-43540 Msa1421980:intron 25.0%
! ATTCAAAAAAGTTTCAGCTT+AGG - tig0025319:43809-43828 None:intergenic 25.0%
!! TTCTCTGTTTTCACATATAA+TGG + tig0025319:43831-43850 Msa1421980:five_prime_UTR 25.0%
! GTTACTGTAAAAAGATGAAA+AGG - tig0025319:43861-43880 None:intergenic 25.0%
!! ACATCACATGATAAGAATTT+TGG + tig0025319:44227-44246 Msa1421980:CDS 25.0%
! TTTGGTTATTTATAGTTGCA+GGG + tig0025319:44538-44557 Msa1421980:intron 25.0%
! ATTAATGAGGATATGTGTAT+TGG + tig0025319:44636-44655 Msa1421980:intron 25.0%
!! TAATGAGAATATTGCTACTT+TGG + tig0025319:44788-44807 Msa1421980:intron 25.0%
! AATTGTGGTATGTATGAAAA+TGG + tig0025319:44847-44866 Msa1421980:intron 25.0%
! TTCATTAATAGGATATGAAG+GGG + tig0025319:45055-45074 Msa1421980:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - tig0025319:45396-45415 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + tig0025319:45322-45341 Msa1421980:intron 25.0%
! CATTTAATAGATGATGTATG+TGG - tig0025319:45361-45380 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + tig0025319:45396-45415 Msa1421980:intron 25.0%
!! CTGAAAAATCTGAAATGTTA+TGG + tig0025319:45446-45465 Msa1421980:intron 25.0%
! TCATTCTTAATGGTTATTGA+TGG + tig0025319:45536-45555 Msa1421980:intron 25.0%
! AGAAGCTTGAAAAAACTAAT+TGG - tig0025319:46196-46215 None:intergenic 25.0%
!! TTGAAGAAGTAACTATTTTC+AGG + tig0025319:46308-46327 Msa1421980:intron 25.0%
!!! ACATCAATTTTGTTTGACTT+TGG + tig0025319:46409-46428 Msa1421980:intron 25.0%
!! TGTTTGACTTTGGAAAATAT+TGG + tig0025319:46419-46438 Msa1421980:intron 25.0%
! ATTAATGGTATAGTTGTGTT+TGG + tig0025319:46465-46484 Msa1421980:intron 25.0%
! CAATTCAAGGTACATATATA+AGG + tig0025319:46577-46596 Msa1421980:intron 25.0%
! ATATATAAGGCGAGATAATT+TGG + tig0025319:46590-46609 Msa1421980:intron 25.0%
!! AATTAGCAATAATGATGATG+TGG + tig0025319:46702-46721 Msa1421980:intron 25.0%
! TTATGCACTAGTAAAATCTT+AGG + tig0025319:46786-46805 Msa1421980:intron 25.0%
! CTAATAGCTAAACTTAATTC+AGG + tig0025319:46899-46918 Msa1421980:intron 25.0%
! TCAATCACTATGATGATAAA+GGG - tig0025319:46973-46992 None:intergenic 25.0%
! ATCAATCACTATGATGATAA+AGG - tig0025319:46974-46993 None:intergenic 25.0%
! TCATAGTGATTGATATTAAC+TGG + tig0025319:46980-46999 Msa1421980:intron 25.0%
!! TCTAAAGAAACTTTTTGTTG+TGG - tig0025319:47210-47229 None:intergenic 25.0%
!!! TATTGGTAATTTTGTATAGG+GGG + tig0025319:47279-47298 Msa1421980:three_prime_UTR 25.0%
!! TTTTGAAAAGAGTGAAAGAG+AGG - tig0025319:43384-43403 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - tig0025319:43496-43515 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + tig0025319:43547-43566 Msa1421980:intron 30.0%
CAAGAGAACAAAACAAAAGT+AGG - tig0025319:43749-43768 None:intergenic 30.0%
!!! AGATTTTGAAACAGTGAACT+AGG - tig0025319:43963-43982 None:intergenic 30.0%
TTATTAGAATCACCAGAAGA+AGG - tig0025319:43999-44018 None:intergenic 30.0%
!! GTTACTAAACATTTTTGGGA+TGG + tig0025319:44020-44039 Msa1421980:CDS 30.0%
!! TGTTCTAAGGAAATGAATTC+TGG + tig0025319:44098-44117 Msa1421980:CDS 30.0%
! AAGGAAATGAATTCTGGTTA+TGG + tig0025319:44104-44123 Msa1421980:CDS 30.0%
TCCAACATTTCCTTTCAAAA+TGG + tig0025319:44293-44312 Msa1421980:CDS 30.0%
!! ACCATTTTGAAAGGAAATGT+TGG - tig0025319:44297-44316 None:intergenic 30.0%
!!! TTTATTTTTGGCTTTCGCAT+TGG + tig0025319:44360-44379 Msa1421980:intron 30.0%
GTTTGGTTATTTATAGTTGC+AGG + tig0025319:44537-44556 Msa1421980:intron 30.0%
ATGGTGACATGTACAATTTA+TGG + tig0025319:44891-44910 Msa1421980:intron 30.0%
AGATTCACTCAATTCAAACT+AGG - tig0025319:44993-45012 None:intergenic 30.0%
!!! GGTAGAAAGTAGTTTTTTTG+TGG + tig0025319:45021-45040 Msa1421980:intron 30.0%
! AAGGGAAATAAAAGCATAAG+TGG - tig0025319:45108-45127 None:intergenic 30.0%
AATTCACAAAAGCTCATGTA+GGG - tig0025319:45138-45157 None:intergenic 30.0%
! TACAGTTTTTATACTTCCTC+CGG + tig0025319:45265-45284 Msa1421980:intron 30.0%
! ATTTTACAAGGAACAGAATC+TGG - tig0025319:46099-46118 None:intergenic 30.0%
TAAACAAAATCATACCCTCT+CGG - tig0025319:46163-46182 None:intergenic 30.0%
ATTTGTACCTTATCCATGTT+TGG - tig0025319:46384-46403 None:intergenic 30.0%
TTGACATTTCTTCATGTTCT+TGG + tig0025319:46491-46510 Msa1421980:intron 30.0%
AACTAATACATCAGACATGT+TGG + tig0025319:46519-46538 Msa1421980:CDS 30.0%
AATTTCCGTTTCACTTGTAA+GGG - tig0025319:46633-46652 None:intergenic 30.0%
AAATTTCCGTTTCACTTGTA+AGG - tig0025319:46634-46653 None:intergenic 30.0%
GATCGATAGTTACAATTTCA+GGG - tig0025319:46660-46679 None:intergenic 30.0%
TGATCGATAGTTACAATTTC+AGG - tig0025319:46661-46680 None:intergenic 30.0%
TAGCAACTGAGTTAAGTTAA+CGG - tig0025319:46822-46841 None:intergenic 30.0%
ACTGCAAGTAATAGAAAAAG+GGG - tig0025319:47018-47037 None:intergenic 30.0%
GACTGCAAGTAATAGAAAAA+GGG - tig0025319:47019-47038 None:intergenic 30.0%
AGAGAGAGATCAAAGTGAAA+GGG - tig0025319:43655-43674 None:intergenic 35.0%
AATTCAAAGAAGAGAAGAGG+TGG - tig0025319:43713-43732 None:intergenic 35.0%
AGAACCAATCCAATTCTTCT+GGG + tig0025319:43916-43935 Msa1421980:CDS 35.0%
!! TTCTGGTTCATCTTGTTCTA+AGG + tig0025319:44085-44104 Msa1421980:CDS 35.0%
! TATGGATGGTTCTTTTGGAT+TGG + tig0025319:44178-44197 Msa1421980:CDS 35.0%
!!! TTTTGGATTGGTTGGTTCAT+TGG + tig0025319:44190-44209 Msa1421980:CDS 35.0%
!! TTTGGATTGGTTGGTTCATT+GGG + tig0025319:44191-44210 Msa1421980:CDS 35.0%
TGGTTCAAATCTTCTTAGAC+AGG + tig0025319:44247-44266 Msa1421980:CDS 35.0%
GGTTCAAATCTTCTTAGACA+GGG + tig0025319:44248-44267 Msa1421980:CDS 35.0%
!! TTTGTTGTAGGGTGTTCTTT+TGG + tig0025319:44703-44722 Msa1421980:intron 35.0%
GTTAATTGCAATCACCTACA+AGG + tig0025319:44819-44838 Msa1421980:intron 35.0%
ATTGAGTGAATCTCAGCTTT+AGG + tig0025319:45000-45019 Msa1421980:intron 35.0%
TAATAGGATATGAAGGGGAT+TGG + tig0025319:45060-45079 Msa1421980:intron 35.0%
CAATTCACAAAAGCTCATGT+AGG - tig0025319:45139-45158 None:intergenic 35.0%
TTGTGAATTGTTCGCGAATT+AGG + tig0025319:45149-45168 Msa1421980:intron 35.0%
ATGTATGTGGTCTACATTGT+AGG + tig0025319:45335-45354 Msa1421980:intron 35.0%
TAATACAAATGTACTCCCTC+CGG - tig0025319:45418-45437 None:intergenic 35.0%
! TGGTAATGTTCATTAGTTGC+AGG + tig0025319:45556-45575 Msa1421980:intron 35.0%
GGTAATGTTCATTAGTTGCA+GGG + tig0025319:45557-45576 Msa1421980:intron 35.0%
GTGTTCAATCGGTTAATAGA+CGG - tig0025319:45646-45665 None:intergenic 35.0%
TATTAACCGATTGAACACTC+AGG + tig0025319:45648-45667 Msa1421980:CDS 35.0%
!! AGGAAGAAGCATTTCTTGAA+GGG - tig0025319:45681-45700 None:intergenic 35.0%
!! AAGGAAGAAGCATTTCTTGA+AGG - tig0025319:45682-45701 None:intergenic 35.0%
TTCAAGAAATGCTTCTTCCT+TGG + tig0025319:45681-45700 Msa1421980:CDS 35.0%
TCAAGAAATGCTTCTTCCTT+GGG + tig0025319:45682-45701 Msa1421980:CDS 35.0%
GATATGTGACAATATTCCCA+AGG - tig0025319:45701-45720 None:intergenic 35.0%
!! TATCTCTGAAATAGATAGCG+AGG + tig0025319:45717-45736 Msa1421980:CDS 35.0%
TATCGTTCCAAGAACTATAG+GGG - tig0025319:45810-45829 None:intergenic 35.0%
GTATCGTTCCAAGAACTATA+GGG - tig0025319:45811-45830 None:intergenic 35.0%
AGTATCGTTCCAAGAACTAT+AGG - tig0025319:45812-45831 None:intergenic 35.0%
TCATTCACAGAAAATCTCAG+TGG + tig0025319:45835-45854 Msa1421980:CDS 35.0%
AATCTCAGTGGTTTGAAAAG+AGG + tig0025319:45847-45866 Msa1421980:CDS 35.0%
ATCTCAGTGGTTTGAAAAGA+GGG + tig0025319:45848-45867 Msa1421980:CDS 35.0%
TCTGATATTCAGGTATGTGT+AGG + tig0025319:45895-45914 Msa1421980:intron 35.0%
! GAAGCTCACTTCACTTATTT+TGG + tig0025319:45917-45936 Msa1421980:intron 35.0%
!!! ATTTGTTTTACTCATCAGCG+TGG + tig0025319:45979-45998 Msa1421980:intron 35.0%
! CTTTTCGCTCGAATTTTACA+AGG - tig0025319:46111-46130 None:intergenic 35.0%
TGTAAAATTCGAGCGAAAAG+AGG + tig0025319:46111-46130 Msa1421980:CDS 35.0%
CTAAGATCAGTGAAAGAATG+AGG + tig0025319:46340-46359 Msa1421980:CDS 35.0%
AATGGTATAGTTGTGTTTGG+AGG + tig0025319:46468-46487 Msa1421980:intron 35.0%
!! AAGGCGAGATAATTTGGTTT+TGG + tig0025319:46596-46615 Msa1421980:intron 35.0%
! TGATGATGTGGAATTTCATG+TGG + tig0025319:46714-46733 Msa1421980:intron 35.0%
TCATTTCATTCTTAGAGACG+TGG - tig0025319:46754-46773 None:intergenic 35.0%
AGCAACTGAGTTAAGTTAAC+GGG - tig0025319:46821-46840 None:intergenic 35.0%
GGACTGCAAGTAATAGAAAA+AGG - tig0025319:47020-47039 None:intergenic 35.0%
GTTTGCTCGTTTATCACTTA+GGG - tig0025319:47041-47060 None:intergenic 35.0%
! AGTTTGCTCGTTTATCACTT+AGG - tig0025319:47042-47061 None:intergenic 35.0%
! ACCTACATGCTTTGAATTCA+GGG - tig0025319:47182-47201 None:intergenic 35.0%
!! AGAAACTTTTTGTTGTGGTG+AGG - tig0025319:47205-47224 None:intergenic 35.0%
GAGAGAGAGTTGTCAAAAAG+TGG - tig0025319:43440-43459 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - tig0025319:43486-43505 None:intergenic 40.0%
GAAAGGGACAAGGAAAGATA+GGG - tig0025319:43639-43658 None:intergenic 40.0%
TGAAAGGGACAAGGAAAGAT+AGG - tig0025319:43640-43659 None:intergenic 40.0%
AGATCAAAGTGAAAGGGACA+AGG - tig0025319:43649-43668 None:intergenic 40.0%
CAGAGAGAGATCAAAGTGAA+AGG - tig0025319:43656-43675 None:intergenic 40.0%
CGCAATTCAAAGAAGAGAAG+AGG - tig0025319:43716-43735 None:intergenic 40.0%
TTCAGCTTAGGAACAAAGCA+GGG - tig0025319:43797-43816 None:intergenic 40.0%
TTTCAGCTTAGGAACAAAGC+AGG - tig0025319:43798-43817 None:intergenic 40.0%
CAGAACCAATCCAATTCTTC+TGG + tig0025319:43915-43934 Msa1421980:CDS 40.0%
! ACACCTTCTTTTCCTTCTTC+TGG + tig0025319:43984-44003 Msa1421980:CDS 40.0%
TCACCAGAAGAAGGAAAAGA+AGG - tig0025319:43990-44009 None:intergenic 40.0%
! ATGAATTCTGGTTATGGTGC+TGG + tig0025319:44110-44129 Msa1421980:CDS 40.0%
! GAACCATGTCTAGGATAATG+AGG - tig0025319:44143-44162 None:intergenic 40.0%
!! TTCTGCTTCTAGTTCTGCTA+TGG + tig0025319:44160-44179 Msa1421980:CDS 40.0%
! TCTGCTATGGATGGTTCTTT+TGG + tig0025319:44173-44192 Msa1421980:CDS 40.0%
!!! GATGGTTCTTTTGGATTGGT+TGG + tig0025319:44182-44201 Msa1421980:CDS 40.0%
! ATTGGTTGGTTCATTGGGAA+TGG + tig0025319:44196-44215 Msa1421980:CDS 40.0%
CAAACCAAACCAAGTTGCTT+GGG - tig0025319:44522-44541 None:intergenic 40.0%
!! ATAGTTGCAGGGTGTTCTTT+TGG + tig0025319:44549-44568 Msa1421980:intron 40.0%
ACCTACAAGGCTAGAAATTG+TGG + tig0025319:44832-44851 Msa1421980:intron 40.0%
!! ACCACAATTTCTAGCCTTGT+AGG - tig0025319:44836-44855 None:intergenic 40.0%
CTCATGTAGGGTGACAAAAA+GGG - tig0025319:45126-45145 None:intergenic 40.0%
! CTCTCAGTACTTTTGCGAAT+TGG - tig0025319:45180-45199 None:intergenic 40.0%
!! TTCGCAAAAGTACTGAGAGT+TGG + tig0025319:45181-45200 Msa1421980:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG - tig0025319:45399-45418 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + tig0025319:45399-45418 Msa1421980:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + tig0025319:45400-45419 Msa1421980:intron 40.0%
TAACAACCTAAGATGCAGGT+GGG - tig0025319:45490-45509 None:intergenic 40.0%
TTAACAACCTAAGATGCAGG+TGG - tig0025319:45491-45510 None:intergenic 40.0%
GTCTTAACAACCTAAGATGC+AGG - tig0025319:45494-45513 None:intergenic 40.0%
ATAGTTTCCAACGCCTTTCA+TGG - tig0025319:45590-45609 None:intergenic 40.0%
AGGTAACCTGAGTGTTCAAT+CGG - tig0025319:45657-45676 None:intergenic 40.0%
!! AGAAGCATTTCTTGAAGGGA+AGG - tig0025319:45677-45696 None:intergenic 40.0%
AACGGTGATTCTACTCACTA+TGG + tig0025319:45775-45794 Msa1421980:CDS 40.0%
ATCATCTCAGATGACGTGTT+CGG - tig0025319:46051-46070 None:intergenic 40.0%
! GTCATCTGAGATGATTGCTA+TGG + tig0025319:46056-46075 Msa1421980:CDS 40.0%
GCTTGTTCCAAACATGGATA+AGG + tig0025319:46374-46393 Msa1421980:CDS 40.0%
TACATCAGACATGTTGGACT+TGG + tig0025319:46525-46544 Msa1421980:CDS 40.0%
GCAACTGAGTTAAGTTAACG+GGG - tig0025319:46820-46839 None:intergenic 40.0%
TTAACTCAGTTGCTATGACG+TGG + tig0025319:46827-46846 Msa1421980:intron 40.0%
! TCAGGGATGAATTTTACCGA+TGG + tig0025319:46917-46936 Msa1421980:intron 40.0%
GAGCAAACTGCAAATGTATG+AGG + tig0025319:47053-47072 Msa1421980:CDS 40.0%
CAAATGTATGAGGATGCAGA+AGG + tig0025319:47063-47082 Msa1421980:CDS 40.0%
ACCCTGAATTCAAAGCATGT+AGG + tig0025319:47178-47197 Msa1421980:three_prime_UTR 40.0%
! GACCTACATGCTTTGAATTC+AGG - tig0025319:47183-47202 None:intergenic 40.0%
AAGAAGAGAAGAGGTGGCTA+TGG - tig0025319:43707-43726 None:intergenic 45.0%
TCAGCTTAGGAACAAAGCAG+GGG - tig0025319:43796-43815 None:intergenic 45.0%
GCAACCCAGAAGAATTGGAT+TGG - tig0025319:43923-43942 None:intergenic 45.0%
ACGAAGCAACCCAGAAGAAT+TGG - tig0025319:43928-43947 None:intergenic 45.0%
! CCATGTCTAGGATAATGAGG+TGG - tig0025319:44140-44159 None:intergenic 45.0%
CCACCTCATTATCCTAGACA+TGG + tig0025319:44137-44156 Msa1421980:CDS 45.0%
CTAGAAGCAGAACCATGTCT+AGG - tig0025319:44152-44171 None:intergenic 45.0%
!! GCTTCTAGTTCTGCTATGGA+TGG + tig0025319:44164-44183 Msa1421980:CDS 45.0%
TGTTGGAGAAAAGACCAGCA+GGG - tig0025319:44280-44299 None:intergenic 45.0%
ATGTTGGAGAAAAGACCAGC+AGG - tig0025319:44281-44300 None:intergenic 45.0%
ATTAGTCGCCTACCATTGGT+GGG - tig0025319:44393-44412 None:intergenic 45.0%
CCAAACCAAACCAAGTTGCT+TGG - tig0025319:44523-44542 None:intergenic 45.0%
!! CCAAGCAACTTGGTTTGGTT+TGG + tig0025319:44520-44539 Msa1421980:intron 45.0%
GCTCATGTAGGGTGACAAAA+AGG - tig0025319:45127-45146 None:intergenic 45.0%
AGTACAAGTTCGTGGTTCTC+TGG + tig0025319:45210-45229 Msa1421980:CDS 45.0%
TGATATCCCACCTGCATCTT+AGG + tig0025319:45481-45500 Msa1421980:intron 45.0%
!! TTTTCTGCCATGAAAGGCGT+TGG + tig0025319:45580-45599 Msa1421980:CDS 45.0%
GGAAACTATGCCACGGTAAA+TGG + tig0025319:45601-45620 Msa1421980:CDS 45.0%
GTCGTTACTACCATTTACCG+TGG - tig0025319:45614-45633 None:intergenic 45.0%
GATTCTACTCACTATGGCTC+TGG + tig0025319:45781-45800 Msa1421980:CDS 45.0%
CTGGATTCCCCTATAGTTCT+TGG + tig0025319:45800-45819 Msa1421980:CDS 45.0%
! TGTTTTACTCATCAGCGTGG+AGG + tig0025319:45982-46001 Msa1421980:intron 45.0%
! GTTTTACTCATCAGCGTGGA+GGG + tig0025319:45983-46002 Msa1421980:intron 45.0%
! GCAAGAGCTTGTTCCAAACA+TGG + tig0025319:46368-46387 Msa1421980:CDS 45.0%
TCCCACCCTTACAAGTGAAA+CGG + tig0025319:46625-46644 Msa1421980:intron 45.0%
TCCGTTTCACTTGTAAGGGT+GGG - tig0025319:46629-46648 None:intergenic 45.0%
TTCCGTTTCACTTGTAAGGG+TGG - tig0025319:46630-46649 None:intergenic 45.0%
!!! TATTTATTTTACTTTATTTT+TGG + tig0025319:44348-44367 Msa1421980:intron 5.0%
GTTGGAGAAAAGACCAGCAG+GGG - tig0025319:44279-44298 None:intergenic 50.0%
! ATTGGTTTCCGACCCACCAA+TGG + tig0025319:44378-44397 Msa1421980:intron 50.0%
! GATTAGTCGCCTACCATTGG+TGG - tig0025319:44394-44413 None:intergenic 50.0%
CCAATGGTAGGCGACTAATC+CGG + tig0025319:44394-44413 Msa1421980:intron 50.0%
TTCCCACTGGGAATCGAACT+CGG + tig0025319:44453-44472 Msa1421980:CDS 50.0%
TACCGAGTTCGATTCCCAGT+GGG - tig0025319:44458-44477 None:intergenic 50.0%
ATACCGAGTTCGATTCCCAG+TGG - tig0025319:44459-44478 None:intergenic 50.0%
GAATCGAACTCGGTATTCCC+CGG + tig0025319:44463-44482 Msa1421980:CDS 50.0%
AATCGAACTCGGTATTCCCC+GGG + tig0025319:44464-44483 Msa1421980:CDS 50.0%
TGAGCCCAAGCAACTTGGTT+TGG + tig0025319:44515-44534 Msa1421980:CDS 50.0%
GGTATGCGAGTACAAGTTCG+TGG + tig0025319:45202-45221 Msa1421980:CDS 50.0%
TCGTGGTTCTCTGGTGAATG+CGG + tig0025319:45219-45238 Msa1421980:intron 50.0%
! GCAGGGTTTTCTGCCATGAA+AGG + tig0025319:45574-45593 Msa1421980:intron 50.0%
!! AGGCGTTGGAAACTATGCCA+CGG + tig0025319:45594-45613 Msa1421980:CDS 50.0%
GAAGCAACTAGCCCTGATGA+CGG + tig0025319:45745-45764 Msa1421980:CDS 50.0%
TTAGAGACGTGGCAGTGTTG+TGG - tig0025319:46743-46762 None:intergenic 50.0%
GTTTCCGACCCACCAATGGT+AGG + tig0025319:44382-44401 Msa1421980:intron 55.0%
!! CCGGATTAGTCGCCTACCAT+TGG - tig0025319:44397-44416 None:intergenic 55.0%
CTAATCCGGCTAGTGCGTAG+AGG + tig0025319:44408-44427 Msa1421980:intron 55.0%
TTCCCAGTGGGAACAACGCT+TGG - tig0025319:44446-44465 None:intergenic 55.0%
ACCAAGTTGCTTGGGCTCAG+TGG - tig0025319:44514-44533 None:intergenic 55.0%
CGTTGCTACCTCCGTCATCA+GGG - tig0025319:45759-45778 None:intergenic 55.0%
!! CCTGATGACGGAGGTAGCAA+CGG + tig0025319:45757-45776 Msa1421980:CDS 55.0%
!! ATCCTCGAAGCATTGCCGAG+AGG + tig0025319:46145-46164 Msa1421980:CDS 55.0%
!! TCCTCGAAGCATTGCCGAGA+GGG + tig0025319:46146-46165 Msa1421980:CDS 55.0%
AGACAGGGTAGTTCCCCTGC+TGG + tig0025319:44263-44282 Msa1421980:CDS 60.0%
! GTCGCCTACCATTGGTGGGT+CGG - tig0025319:44389-44408 None:intergenic 60.0%
GCATGCCTCTACGCACTAGC+CGG - tig0025319:44416-44435 None:intergenic 60.0%
! TGGCCAAGCGTTGTTCCCAC+TGG + tig0025319:44440-44459 Msa1421980:CDS 60.0%
! GGCCAAGCGTTGTTCCCACT+GGG + tig0025319:44441-44460 Msa1421980:CDS 60.0%
GTATTCCCCGGGAACGTCCT+TGG + tig0025319:44475-44494 Msa1421980:CDS 60.0%
TCCTTCCAAGGACGTTCCCG+GGG - tig0025319:44483-44502 None:intergenic 60.0%
CTCCTTCCAAGGACGTTCCC+GGG - tig0025319:44484-44503 None:intergenic 60.0%
GCTCCTTCCAAGGACGTTCC+CGG - tig0025319:44485-44504 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG - tig0025319:44495-44514 None:intergenic 60.0%
GTTGCTTGGGCTCAGTGGCA+AGG - tig0025319:44509-44528 None:intergenic 60.0%
GCCACTGAGCCCAAGCAACT+TGG + tig0025319:44510-44529 Msa1421980:CDS 60.0%
!! GCAACTAGCCCTGATGACGG+AGG + tig0025319:45748-45767 Msa1421980:CDS 60.0%
CCGTTGCTACCTCCGTCATC+AGG - tig0025319:45760-45779 None:intergenic 60.0%
ACTCATCAGCGTGGAGGGCT+TGG + tig0025319:45988-46007 Msa1421980:intron 60.0%
ACCCTCTCGGCAATGCTTCG+AGG - tig0025319:46150-46169 None:intergenic 60.0%
! GTGCGTAGAGGCATGCGCAC+TGG + tig0025319:44420-44439 Msa1421980:intron 65.0%
TCCCCGGGAACGTCCTTGGA+AGG + tig0025319:44479-44498 Msa1421980:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0025319 gene 43345 47381 43345 ID=Msa1421980;Name=Msa1421980
tig0025319 mRNA 43345 47381 43345 ID=Msa1421980-mRNA-1;Parent=Msa1421980;Name=Msa1421980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=364|0.62|0.77|0.77|0.87|0.77|9|273|435
tig0025319 exon 43345 43416 43345 ID=Msa1421980-mRNA-1:exon:2371;Parent=Msa1421980-mRNA-1
tig0025319 exon 43599 44314 43599 ID=Msa1421980-mRNA-1:exon:2372;Parent=Msa1421980-mRNA-1
tig0025319 exon 44421 44536 44421 ID=Msa1421980-mRNA-1:exon:2373;Parent=Msa1421980-mRNA-1
tig0025319 exon 45171 45231 45171 ID=Msa1421980-mRNA-1:exon:2374;Parent=Msa1421980-mRNA-1
tig0025319 exon 45578 45906 45578 ID=Msa1421980-mRNA-1:exon:2375;Parent=Msa1421980-mRNA-1
tig0025319 exon 45997 46167 45997 ID=Msa1421980-mRNA-1:exon:2376;Parent=Msa1421980-mRNA-1
tig0025319 exon 46330 46395 46330 ID=Msa1421980-mRNA-1:exon:2377;Parent=Msa1421980-mRNA-1
tig0025319 exon 46517 46585 46517 ID=Msa1421980-mRNA-1:exon:2378;Parent=Msa1421980-mRNA-1
tig0025319 exon 47037 47381 47037 ID=Msa1421980-mRNA-1:exon:2379;Parent=Msa1421980-mRNA-1
tig0025319 five_prime_UTR 43345 43416 43345 ID=Msa1421980-mRNA-1:five_prime_utr;Parent=Msa1421980-mRNA-1
tig0025319 five_prime_UTR 43599 43890 43599 ID=Msa1421980-mRNA-1:five_prime_utr;Parent=Msa1421980-mRNA-1
tig0025319 CDS 43891 44314 43891 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 44421 44536 44421 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 45171 45231 45171 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 45578 45906 45578 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 45997 46167 45997 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 46330 46395 46330 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 46517 46585 46517 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 CDS 47037 47108 47037 ID=Msa1421980-mRNA-1:cds;Parent=Msa1421980-mRNA-1
tig0025319 three_prime_UTR 47109 47381 47109 ID=Msa1421980-mRNA-1:three_prime_utr;Parent=Msa1421980-mRNA-1
Gene Sequence

>Msa1421980

ATGGATTCTAATACTCATCAACAACAGAACCAATCCAATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTGTTTCAAAATCTCACACCTTCTTTTCCTTCTTCTGGTGATTCTAATAAAGTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATAATAATATTTCTGGTTCATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGCTGGTTTGCCACCTCATTATCCTAGACATGGTTCTGCTTCTAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATCACATGATAAGAATTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGTGCGTAGAGGCATGCGCACTGGCCAAGCGTTGTTCCCACTGGGAATCGAACTCGGTATTCCCCGGGAACGTCCTTGGAAGGAGCTCCTTGCCACTGAGCCCAAGCAACTTGGTTTGGACGAACCAATTCGCAAAAGTACTGAGAGTTGGTATGCGAGTACAAGTTCGTGGTTCTCTGGGTTTTCTGCCATGAAAGGCGTTGGAAACTATGCCACGGTAAATGGTAGTAACGACGAACTTAGTCCGTCTATTAACCGATTGAACACTCAGGTTACCTTCCCTTCAAGAAATGCTTCTTCCTTGGGAATATTGTCACATATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAACGGTGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGATACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCAGTAACGAAAAAATGTTTTCTGATATTCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCGAACACGTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAATACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGATAAACGAGCAAACTGCAAATGTATGAGGATGCAGAAGGCAGATACAAATCAAATTACTTGA
Protein sequence

>Msa1421980

MDSNTHQQQNQSNSSGLLRFRSAPSSLFQNLTPSFPSSGDSNKVTKHFWDGSESERFVSNDNNNISGSSCSKEMNSGYGAGLPPHYPRHGSASSSAMDGSFGLVGSLGMDQETSHDKNFGSNLLRQGSSPAGLFSNISFQNVRRGMRTGQALFPLGIELGIPRERPWKELLATEPKQLGLDEPIRKSTESWYASTSSWFSGFSAMKGVGNYATVNGSNDELSPSINRLNTQVTFPSRNASSLGILSHISEIDSEDIEATSPDDGGSNGDSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDIQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQKADTNQIT*