AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117510 MtrunA17_Chr1g0174271 73.077 442 48 8 2 435 4 382 0.0 597
Msa0117510 MtrunA17_Chr7g0258181 53.913 230 77 3 197 423 112 315 3.30e-69 222
Msa0117510 MtrunA17_Chr4g0032951 49.793 241 100 8 200 428 201 432 6.77e-65 214
Msa0117510 MtrunA17_Chr2g0329041 50.213 235 101 6 201 428 183 408 1.00e-63 211
Msa0117510 MtrunA17_Chr3g0087771 44.878 205 100 4 229 428 203 399 8.33e-44 158
Msa0117510 MtrunA17_Chr8g0351881 41.423 239 121 5 193 423 161 388 7.13e-38 141
Msa0117510 MtrunA17_Chr4g0014771 69.663 89 25 1 335 423 104 190 3.55e-37 134
Msa0117510 MtrunA17_Chr1g0213791 62.617 107 37 2 318 423 233 337 4.72e-36 135
Msa0117510 MtrunA17_Chr4g0074161 59.420 69 27 1 350 418 205 272 1.52e-17 84.3
Msa0117510 MtrunA17_Chr1g0190731 53.333 75 34 1 344 418 186 259 1.90e-16 80.5
Msa0117510 MtrunA17_Chr1g0152131 53.425 73 34 0 349 421 258 330 2.49e-16 80.5
Msa0117510 MtrunA17_Chr3g0131771 56.716 67 29 0 351 417 147 213 1.61e-15 77.4
Msa0117510 MtrunA17_Chr5g0421111 53.521 71 33 0 351 421 365 435 3.97e-15 77.4
Msa0117510 MtrunA17_Chr3g0144641 55.072 69 31 0 351 419 191 259 4.75e-15 76.6
Msa0117510 MtrunA17_Chr7g0234761 53.623 69 32 0 351 419 317 385 9.13e-15 76.3
Msa0117510 MtrunA17_Chr8g0365941 53.623 69 32 0 351 419 305 373 1.13e-14 75.9
Msa0117510 MtrunA17_Chr8g0339091 53.731 67 31 0 351 417 291 357 2.14e-14 75.1
Msa0117510 MtrunA17_Chr4g0035101 50.000 76 36 1 344 419 138 211 2.61e-14 73.9
Msa0117510 MtrunA17_Chr8g0385911 52.174 69 33 0 351 419 145 213 3.60e-14 73.2
Msa0117510 MtrunA17_Chr8g0363921 50.746 67 33 0 351 417 151 217 1.98e-13 70.5
Msa0117510 MtrunA17_Chr5g0415291 49.254 67 34 0 351 417 112 178 2.39e-12 66.6
Msa0117510 MtrunA17_Chr7g0258161 45.070 71 39 0 349 419 171 241 6.96e-12 66.6
Msa0117510 MtrunA17_Chr1g0152651 54.545 66 29 1 350 415 273 337 9.49e-12 66.2
Msa0117510 MtrunA17_Chr3g0134741 54.545 66 29 1 350 415 228 292 1.38e-11 65.5
Msa0117510 MtrunA17_Chr1g0174161 43.662 71 40 0 349 419 158 228 2.19e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117510 AT2G42280.1 52.778 252 94 4 182 428 125 356 2.11e-72 232
Msa0117510 AT2G42280.1 35.758 165 78 4 1 147 1 155 4.30e-15 76.6
Msa0117510 AT2G42280.3 52.119 236 88 4 182 412 125 340 1.39e-63 209
Msa0117510 AT2G42280.3 35.758 165 78 4 1 147 1 155 3.60e-15 77.0
Msa0117510 AT1G51140.1 32.644 435 203 16 6 423 15 376 3.25e-44 159
Msa0117510 AT1G35460.1 68.966 87 25 1 337 423 169 253 3.22e-38 139
Msa0117510 AT1G05805.1 39.095 243 114 9 185 423 143 355 2.24e-37 140
Msa0117510 AT2G43140.1 62.857 105 38 1 320 423 102 206 2.61e-37 135
Msa0117510 AT2G43140.2 60.909 110 42 1 320 428 199 308 8.30e-37 137
Msa0117510 AT4G09180.1 65.909 88 28 1 337 424 172 257 1.44e-34 129
Msa0117510 AT2G42280.2 43.229 192 84 4 182 368 125 296 2.12e-32 125
Msa0117510 AT2G42280.2 35.758 165 78 4 1 147 1 155 4.45e-15 75.9
Msa0117510 AT1G35460.2 79.245 53 9 1 337 389 169 219 5.01e-23 97.4
Msa0117510 AT2G24260.2 60.870 69 26 1 350 418 34 101 2.03e-18 84.7
Msa0117510 AT2G24260.1 60.870 69 26 1 350 418 137 204 8.53e-18 84.7
Msa0117510 AT4G30980.1 59.420 69 27 1 350 418 129 196 1.93e-17 83.2
Msa0117510 AT4G30980.2 57.333 75 30 2 344 418 172 244 3.72e-17 82.8
Msa0117510 AT5G58010.1 55.072 69 30 1 350 418 98 165 1.54e-16 80.5
Msa0117510 AT4G34530.1 56.522 69 30 0 351 419 172 240 6.06e-16 79.0
Msa0117510 AT1G10120.2 54.930 71 32 0 351 421 206 276 1.53e-15 78.2
Msa0117510 AT1G10120.1 54.930 71 32 0 351 421 206 276 1.53e-15 78.2
Msa0117510 AT5G50915.3 56.716 67 29 0 351 417 136 202 2.06e-15 76.6
Msa0117510 AT5G50915.4 56.716 67 29 0 351 417 136 202 2.06e-15 76.6
Msa0117510 AT5G50915.1 56.716 67 29 0 351 417 136 202 2.62e-15 76.6
Msa0117510 AT5G50915.2 56.716 67 29 0 351 417 136 202 2.62e-15 76.6
Msa0117510 AT1G68920.3 52.113 71 34 0 351 421 302 372 6.58e-15 77.0
Msa0117510 AT1G68920.1 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa0117510 AT1G68920.4 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa0117510 AT1G68920.2 52.113 71 34 0 351 421 303 373 7.15e-15 77.0
Msa0117510 AT1G25330.1 45.055 91 48 2 342 431 96 185 9.36e-15 73.6
Msa0117510 AT1G26260.5 55.224 67 30 0 351 417 201 267 2.71e-14 74.3
Msa0117510 AT3G07340.2 53.731 67 31 0 351 417 258 324 2.92e-14 74.7
Msa0117510 AT1G26260.4 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa0117510 AT1G26260.1 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa0117510 AT1G26260.6 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa0117510 AT1G26260.2 55.224 67 30 0 351 417 223 289 3.19e-14 74.3
Msa0117510 AT3G07340.1 53.731 67 31 0 351 417 258 324 3.32e-14 74.7
Msa0117510 AT1G26260.3 55.224 67 30 0 351 417 172 238 3.37e-14 73.9
Msa0117510 AT5G48560.1 47.368 76 40 0 351 426 301 376 4.37e-14 74.3
Msa0117510 AT5G48560.2 47.368 76 40 0 351 426 301 376 4.74e-14 74.3
Msa0117510 AT3G23690.1 50.725 69 34 0 351 419 191 259 2.78e-13 71.2
Msa0117510 AT1G59640.1 50.746 67 33 0 351 417 136 202 4.57e-13 69.7
Msa0117510 AT2G42300.4 46.053 76 40 1 345 419 178 253 6.09e-13 69.3
Msa0117510 AT2G42300.1 46.053 76 40 1 345 419 178 253 6.51e-13 69.7
Msa0117510 AT1G18400.2 47.826 69 36 0 349 417 143 211 7.05e-13 68.6
Msa0117510 AT1G73830.2 49.254 67 34 0 351 417 147 213 8.93e-13 68.6
Msa0117510 AT1G18400.1 47.826 69 36 0 349 417 143 211 9.89e-13 68.6
Msa0117510 AT1G73830.1 49.254 67 34 0 351 417 147 213 9.93e-13 68.6
Msa0117510 AT2G18300.2 47.826 69 36 0 351 419 185 253 1.26e-12 68.9
Msa0117510 AT2G18300.1 47.826 69 36 0 351 419 185 253 1.26e-12 68.9
Msa0117510 AT4G36540.2 45.455 77 40 1 341 417 133 207 1.38e-12 68.6
Msa0117510 AT4G36540.1 45.455 77 40 1 341 417 133 207 1.39e-12 68.6
Msa0117510 AT1G59640.2 50.746 67 33 0 351 417 136 202 1.82e-12 68.6
Msa0117510 AT2G18300.3 47.826 69 36 0 351 419 185 253 1.86e-12 68.9
Msa0117510 AT3G57800.2 46.479 71 38 0 349 419 202 272 1.88e-12 68.9
Msa0117510 AT1G27740.1 52.857 70 32 1 346 415 162 230 8.92e-12 65.5
Msa0117510 AT2G14760.1 54.545 66 29 1 350 415 236 300 1.21e-11 66.2
Msa0117510 AT4G33880.1 54.545 66 29 1 350 415 265 329 1.37e-11 66.2
Msa0117510 AT5G62610.2 46.269 67 36 0 351 417 153 219 2.19e-11 64.7
Msa0117510 AT5G62610.1 46.269 67 36 0 351 417 153 219 2.19e-11 64.7

Find 120 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGATAATAATAATATTTC+TGG 0.136535 1_3:+38469289 Msa0117510:CDS
ACATCACATGATAAGAATTT+TGG 0.193728 1_3:+38469448 Msa0117510:CDS
TCTGCTATGGATGGTTCTTT+TGG 0.221242 1_3:+38469394 Msa0117510:CDS
GGAAACTATGCCACGGTAAA+TGG 0.245415 1_3:+38470821 Msa0117510:CDS
TACAGTAACATTATTTATAA+TGG 0.246127 1_3:+38469093 Msa0117510:exon
GACCTACATGCTTTGAATTC+AGG 0.246604 1_3:-38472400 None:intergenic
CAGAACCAATCCAATTCTTC+TGG 0.250255 1_3:+38469136 Msa0117510:CDS
TTAAGAGTAAAACATTTATT+AGG 0.250342 1_3:-38472525 None:intergenic
AAAGATAGGGATAAATAAAA+AGG 0.251395 1_3:-38468844 None:intergenic
TGTTCTAAGGAAATGAATTC+TGG 0.257572 1_3:+38469319 Msa0117510:CDS
TCCAACATTTCCTTTCAAAA+TGG 0.262412 1_3:+38469514 Msa0117510:CDS
CTGGATTCCCCTATAGTTCT+TGG 0.264196 1_3:+38471020 Msa0117510:CDS
TTCTGGTTCATCTTGTTCTA+AGG 0.264253 1_3:+38469306 Msa0117510:CDS
CCAATATAGATTAATACTAT+TGG 0.266205 1_3:-38472482 None:intergenic
TGAAAGGGACAAGGAAAGAT+AGG 0.311528 1_3:-38468858 None:intergenic
CCAATAGTATTAATCTATAT+TGG 0.322787 1_3:+38472482 Msa0117510:three_prime_UTR
ATTTGTACCTTATCCATGTT+TGG 0.331656 1_3:-38471601 None:intergenic
TTTGGATTGGTTGGTTCATT+GGG 0.337311 1_3:+38469412 Msa0117510:CDS
AGTATCGTTCCAAGAACTAT+AGG 0.348915 1_3:-38471029 None:intergenic
TCAAGAAATGCTTCTTCCTT+GGG 0.356423 1_3:+38470902 Msa0117510:CDS
ACGAAGCAACCCAGAAGAAT+TGG 0.359803 1_3:-38469146 None:intergenic
TTCAAGAAATGCTTCTTCCT+TGG 0.367694 1_3:+38470901 Msa0117510:CDS
CCGTTGCTACCTCCGTCATC+AGG 0.377114 1_3:-38470977 None:intergenic
GCTCCTTCCAAGGACGTTCC+CGG 0.380905 1_3:-38469703 None:intergenic
ACTCATCAGCGTGGAGGGCT+TGG 0.396464 1_3:+38471208 Msa0117510:intron
GTTTGCTCGTTTATCACTTA+GGG 0.399495 1_3:-38472258 None:intergenic
GTATCGTTCCAAGAACTATA+GGG 0.399539 1_3:-38471028 None:intergenic
AAGGAAATGAATTCTGGTTA+TGG 0.401146 1_3:+38469325 Msa0117510:CDS
TGAGCCCAAGCAACTTGGTT+TGG 0.405304 1_3:+38469736 Msa0117510:CDS
ACCTACATGCTTTGAATTCA+GGG 0.417455 1_3:-38472399 None:intergenic
ATTGGTTGGTTCATTGGGAA+TGG 0.419938 1_3:+38469417 Msa0117510:CDS
ATAGTTTCCAACGCCTTTCA+TGG 0.421587 1_3:-38470807 None:intergenic
TGGTTCAAATCTTCTTAGAC+AGG 0.423641 1_3:+38469468 Msa0117510:CDS
ATGAATTCTGGTTATGGTGC+TGG 0.434475 1_3:+38469331 Msa0117510:CDS
TGGCCAAGCGTTGTTCCCAC+TGG 0.434491 1_3:+38469661 Msa0117510:CDS
GTATTCCCCGGGAACGTCCT+TGG 0.436340 1_3:+38469696 Msa0117510:CDS
CTCCTTCCAAGGACGTTCCC+GGG 0.439117 1_3:-38469702 None:intergenic
GCTTCTAGTTCTGCTATGGA+TGG 0.439803 1_3:+38469385 Msa0117510:CDS
CAAGAGAACAAAACAAAAGT+AGG 0.444303 1_3:-38468967 None:intergenic
AACGGTGATTCTACTCACTA+TGG 0.453244 1_3:+38470995 Msa0117510:CDS
AGTTTGCTCGTTTATCACTT+AGG 0.455813 1_3:-38472259 None:intergenic
TTCCCAGTGGGAACAACGCT+TGG 0.461024 1_3:-38469664 None:intergenic
TTCTGCTTCTAGTTCTGCTA+TGG 0.461461 1_3:+38469381 Msa0117510:CDS
GTGCGTAGAGGCATGCGCAC+TGG 0.462431 1_3:+38469641 Msa0117510:intron
GATTCTACTCACTATGGCTC+TGG 0.464368 1_3:+38471001 Msa0117510:CDS
AGTACAAGTTCGTGGTTCTC+TGG 0.465344 1_3:+38470430 Msa0117510:CDS
ACCCTCTCGGCAATGCTTCG+AGG 0.468775 1_3:-38471367 None:intergenic
AAAGTTTCTTTAGATTAAAG+TGG 0.471862 1_3:+38472436 Msa0117510:three_prime_UTR
GCCACTGAGCCCAAGCAACT+TGG 0.472170 1_3:+38469731 Msa0117510:CDS
CCAAACCAAACCAAGTTGCT+TGG 0.472419 1_3:-38469741 None:intergenic
AAGGAAGAAGCATTTCTTGA+AGG 0.479751 1_3:-38470899 None:intergenic
TCCTCGAAGCATTGCCGAGA+GGG 0.481258 1_3:+38471366 Msa0117510:CDS
TGTAAAATTCGAGCGAAAAG+AGG 0.493630 1_3:+38471331 Msa0117510:CDS
GCTTGTTCCAAACATGGATA+AGG 0.495622 1_3:+38471594 Msa0117510:CDS
TCACCAGAAGAAGGAAAAGA+AGG 0.496661 1_3:-38469208 None:intergenic
CAGAGAGAGATCAAAGTGAA+AGG 0.499422 1_3:-38468874 None:intergenic
AGAACCAATCCAATTCTTCT+GGG 0.502541 1_3:+38469137 Msa0117510:CDS
AGAGAGAGATCAAAGTGAAA+GGG 0.505286 1_3:-38468873 None:intergenic
CAAACCAAACCAAGTTGCTT+GGG 0.506840 1_3:-38469740 None:intergenic
AGGAAGAAGCATTTCTTGAA+GGG 0.507126 1_3:-38470898 None:intergenic
ATGTTGGAGAAAAGACCAGC+AGG 0.517169 1_3:-38469499 None:intergenic
ATCTCAGTGGTTTGAAAAGA+GGG 0.517303 1_3:+38471068 Msa0117510:CDS
ATCATCTCAGATGACGTGTT+CGG 0.518952 1_3:-38471268 None:intergenic
TTCAGCTTAGGAACAAAGCA+GGG 0.521484 1_3:-38469015 None:intergenic
TTTCAGCTTAGGAACAAAGC+AGG 0.524207 1_3:-38469016 None:intergenic
AATCTCAGTGGTTTGAAAAG+AGG 0.526692 1_3:+38471067 Msa0117510:CDS
CCACCTCATTATCCTAGACA+TGG 0.529372 1_3:+38469358 Msa0117510:CDS
AGGTAACCTGAGTGTTCAAT+CGG 0.530212 1_3:-38470874 None:intergenic
TTATTAGAATCACCAGAAGA+AGG 0.532913 1_3:-38469217 None:intergenic
AGAAGCATTTCTTGAAGGGA+AGG 0.535438 1_3:-38470894 None:intergenic
AACTAATACATCAGACATGT+TGG 0.535882 1_3:+38471739 Msa0117510:CDS
GAAAGGGACAAGGAAAGATA+GGG 0.536386 1_3:-38468857 None:intergenic
AGACAGGGTAGTTCCCCTGC+TGG 0.543236 1_3:+38469484 Msa0117510:CDS
GCAACCCAGAAGAATTGGAT+TGG 0.543641 1_3:-38469141 None:intergenic
AAGAAGAGAAGAGGTGGCTA+TGG 0.548362 1_3:-38468925 None:intergenic
GCAAGAGCTTGTTCCAAACA+TGG 0.548846 1_3:+38471588 Msa0117510:CDS
GGCCAAGCGTTGTTCCCACT+GGG 0.553114 1_3:+38469662 Msa0117510:CDS
TACATCAGACATGTTGGACT+TGG 0.558173 1_3:+38471745 Msa0117510:CDS
GAATCGAACTCGGTATTCCC+CGG 0.558333 1_3:+38469684 Msa0117510:CDS
CTAAGATCAGTGAAAGAATG+AGG 0.559063 1_3:+38471560 Msa0117510:CDS
TTCCCACTGGGAATCGAACT+CGG 0.563385 1_3:+38469674 Msa0117510:CDS
CGCAATTCAAAGAAGAGAAG+AGG 0.564503 1_3:-38468934 None:intergenic
CGTTGCTACCTCCGTCATCA+GGG 0.572371 1_3:-38470976 None:intergenic
CTAGAAGCAGAACCATGTCT+AGG 0.577677 1_3:-38469370 None:intergenic
GAGCAAACTGCAAATGTATG+AGG 0.578835 1_3:+38472273 Msa0117510:CDS
TCCCCGGGAACGTCCTTGGA+AGG 0.580649 1_3:+38469700 Msa0117510:CDS
ACCAAGTTGCTTGGGCTCAG+TGG 0.586686 1_3:-38469732 None:intergenic
TTCGCAAAAGTACTGAGAGT+TGG 0.587857 1_3:+38470401 Msa0117510:CDS
GTTGCTTGGGCTCAGTGGCA+AGG 0.590030 1_3:-38469727 None:intergenic
GTGGCAAGGAGCTCCTTCCA+AGG 0.591784 1_3:-38469713 None:intergenic
GGTATGCGAGTACAAGTTCG+TGG 0.592023 1_3:+38470422 Msa0117510:CDS
AATCGAACTCGGTATTCCCC+GGG 0.593437 1_3:+38469685 Msa0117510:CDS
GAACCATGTCTAGGATAATG+AGG 0.594617 1_3:-38469361 None:intergenic
GTCATCTGAGATGATTGCTA+TGG 0.594714 1_3:+38471276 Msa0117510:CDS
AGATCAAAGTGAAAGGGACA+AGG 0.595140 1_3:-38468867 None:intergenic
TAAACAAAATCATACCCTCT+CGG 0.600646 1_3:-38471380 None:intergenic
CCTGATGACGGAGGTAGCAA+CGG 0.614696 1_3:+38470977 Msa0117510:CDS
TATCGTTCCAAGAACTATAG+GGG 0.622302 1_3:-38471027 None:intergenic
TCCTTCCAAGGACGTTCCCG+GGG 0.622327 1_3:-38469701 None:intergenic
GGTTCAAATCTTCTTAGACA+GGG 0.631058 1_3:+38469469 Msa0117510:CDS
GAAGCAACTAGCCCTGATGA+CGG 0.637823 1_3:+38470965 Msa0117510:CDS
TATCTCTGAAATAGATAGCG+AGG 0.637851 1_3:+38470937 Msa0117510:CDS
GTGTTCAATCGGTTAATAGA+CGG 0.638059 1_3:-38470863 None:intergenic
TGTTGGAGAAAAGACCAGCA+GGG 0.641864 1_3:-38469498 None:intergenic
GTCGTTACTACCATTTACCG+TGG 0.643365 1_3:-38470831 None:intergenic
GATATGTGACAATATTCCCA+AGG 0.645646 1_3:-38470918 None:intergenic
TACCGAGTTCGATTCCCAGT+GGG 0.652274 1_3:-38469676 None:intergenic
AATTCAAAGAAGAGAAGAGG+TGG 0.659106 1_3:-38468931 None:intergenic
ACCCTGAATTCAAAGCATGT+AGG 0.668934 1_3:+38472398 Msa0117510:three_prime_UTR
TATTAACCGATTGAACACTC+AGG 0.669123 1_3:+38470868 Msa0117510:CDS
TCAGCTTAGGAACAAAGCAG+GGG 0.671703 1_3:-38469014 None:intergenic
CTAATCCGGCTAGTGCGTAG+AGG 0.675720 1_3:+38469629 Msa0117510:intron
GTTGGAGAAAAGACCAGCAG+GGG 0.676212 1_3:-38469497 None:intergenic
AGGCGTTGGAAACTATGCCA+CGG 0.680755 1_3:+38470814 Msa0117510:CDS
ATCCTCGAAGCATTGCCGAG+AGG 0.702830 1_3:+38471365 Msa0117510:CDS
CAAATGTATGAGGATGCAGA+AGG 0.707448 1_3:+38472283 Msa0117510:CDS
GCAACTAGCCCTGATGACGG+AGG 0.713476 1_3:+38470968 Msa0117510:CDS
CCATGTCTAGGATAATGAGG+TGG 0.720480 1_3:-38469358 None:intergenic
TCATTCACAGAAAATCTCAG+TGG 0.729969 1_3:+38471055 Msa0117510:CDS
ATACCGAGTTCGATTCCCAG+TGG 0.745051 1_3:-38469677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTAATTAA+TGG + chr1_3:38471666-38471685 Msa0117510:intron 0.0%
!! AAAAAAAAAAATGATTATGA+TGG + chr1_3:38470092-38470111 Msa0117510:intron 10.0%
!!! AAGTTATATTTTTCATTAAT+AGG + chr1_3:38470264-38470283 Msa0117510:intron 10.0%
!! TACAGTAACATTATTTATAA+TGG + chr1_3:38469093-38469112 Msa0117510:exon 15.0%
!!! ATAAAGTTACTAAACATTTT+TGG + chr1_3:38469236-38469255 Msa0117510:CDS 15.0%
!!! TAAAGTTACTAAACATTTTT+GGG + chr1_3:38469237-38469256 Msa0117510:CDS 15.0%
!! AACGATAATAATAATATTTC+TGG + chr1_3:38469289-38469308 Msa0117510:CDS 15.0%
!!! TATGTTTTATGTTGTTATTT+TGG + chr1_3:38469540-38469559 Msa0117510:intron 15.0%
!! ATTTATTGAATGAATCTAAA+AGG - chr1_3:38470534-38470553 None:intergenic 15.0%
!! TATATACAATTCATTCTTAA+TGG + chr1_3:38470746-38470765 Msa0117510:intron 15.0%
!! ATTTATGAAATTATAACCAT+CGG - chr1_3:38472156-38472175 None:intergenic 15.0%
!!! TATATTGGTAATTTTGTATA+GGG + chr1_3:38472497-38472516 Msa0117510:three_prime_UTR 15.0%
!! TTAAGAGTAAAACATTTATT+AGG - chr1_3:38472528-38472547 None:intergenic 15.0%
!!! TTTTCAAAAGCAAATCTAAA+AGG + chr1_3:38468618-38468637 Msa0117510:five_prime_UTR 20.0%
!!! TTCTTATTTGTCAAAAACAA+TGG - chr1_3:38468730-38468749 None:intergenic 20.0%
!! AAGATAGGGATAAATAAAAA+GGG - chr1_3:38468846-38468865 None:intergenic 20.0%
!! AAAGATAGGGATAAATAAAA+AGG - chr1_3:38468847-38468866 None:intergenic 20.0%
!! TTACTGTAAAAAGATGAAAA+GGG - chr1_3:38469081-38469100 None:intergenic 20.0%
!!! AAACATATTACCATTTTGAA+AGG - chr1_3:38469527-38469546 None:intergenic 20.0%
!!! TTTATGTTGTTATTTTGGTT+TGG + chr1_3:38469545-38469564 Msa0117510:intron 20.0%
!! TATGAGTAATGATATTAATG+AGG + chr1_3:38469844-38469863 Msa0117510:intron 20.0%
!!! TATGAATGATTTTTTGTTGT+AGG + chr1_3:38469912-38469931 Msa0117510:intron 20.0%
!!! ATGAATGATTTTTTGTTGTA+GGG + chr1_3:38469913-38469932 Msa0117510:intron 20.0%
!!! TTAATGTTGTTTTAGTTTTC+TGG + chr1_3:38469952-38469971 Msa0117510:intron 20.0%
!! GAATTTAATGATTCAATTTG+TGG + chr1_3:38470147-38470166 Msa0117510:intron 20.0%
!!! TTTTCATTAATAGGATATGA+AGG + chr1_3:38470273-38470292 Msa0117510:intron 20.0%
!! TTTCATTAATAGGATATGAA+GGG + chr1_3:38470274-38470293 Msa0117510:intron 20.0%
!!! AAAAATGTTTTCTGATATTC+AGG + chr1_3:38471105-38471124 Msa0117510:CDS 20.0%
!! AAATCTTCAAAAACAATTCA+AGG + chr1_3:38471784-38471803 Msa0117510:CDS 20.0%
!! TTGCTAATTCATAAAAGTTA+TGG - chr1_3:38471911-38471930 None:intergenic 20.0%
!! TAATAGCTAAACTTAATTCA+GGG + chr1_3:38472120-38472139 Msa0117510:intron 20.0%
!! AAAGTTTCTTTAGATTAAAG+TGG + chr1_3:38472436-38472455 Msa0117510:three_prime_UTR 20.0%
!! CCAATATAGATTAATACTAT+TGG - chr1_3:38472485-38472504 None:intergenic 20.0%
!! CCAATAGTATTAATCTATAT+TGG + chr1_3:38472482-38472501 Msa0117510:three_prime_UTR 20.0%
!!! CTATATTGGTAATTTTGTAT+AGG + chr1_3:38472496-38472515 Msa0117510:three_prime_UTR 20.0%
!!! ATATTGGTAATTTTGTATAG+GGG + chr1_3:38472498-38472517 Msa0117510:three_prime_UTR 20.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr1_3:38468742-38468761 Msa0117510:intron 25.0%
! ATTCAAAAAAGTTTCAGCTT+AGG - chr1_3:38469030-38469049 None:intergenic 25.0%
!! TTCTCTGTTTTCACATATAA+TGG + chr1_3:38469052-38469071 Msa0117510:five_prime_UTR 25.0%
! GTTACTGTAAAAAGATGAAA+AGG - chr1_3:38469082-38469101 None:intergenic 25.0%
!! ACATCACATGATAAGAATTT+TGG + chr1_3:38469448-38469467 Msa0117510:CDS 25.0%
! TTTGGTTATTTATAGTTGCA+GGG + chr1_3:38469759-38469778 Msa0117510:intron 25.0%
! ATTAATGAGGATATGTGTAT+TGG + chr1_3:38469857-38469876 Msa0117510:intron 25.0%
!! TAATGAGAATATTGCTACTT+TGG + chr1_3:38470009-38470028 Msa0117510:intron 25.0%
! AATTGTGGTATGTATGAAAA+TGG + chr1_3:38470068-38470087 Msa0117510:intron 25.0%
! TTCATTAATAGGATATGAAG+GGG + chr1_3:38470275-38470294 Msa0117510:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr1_3:38470616-38470635 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_3:38470542-38470561 Msa0117510:intron 25.0%
! CATTTAATAGATGATGTATG+TGG - chr1_3:38470581-38470600 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr1_3:38470616-38470635 Msa0117510:intron 25.0%
!! CTGAAAAATCTGAAATGTTA+TGG + chr1_3:38470666-38470685 Msa0117510:intron 25.0%
! TCATTCTTAATGGTTATTGA+TGG + chr1_3:38470756-38470775 Msa0117510:intron 25.0%
! AGAAGCTTGAAAAAACTAAT+TGG - chr1_3:38471416-38471435 None:intergenic 25.0%
!! TTGAAGAAGTAACTATTTTC+AGG + chr1_3:38471528-38471547 Msa0117510:intron 25.0%
!!! ACATCAATTTTGTTTGACTT+TGG + chr1_3:38471629-38471648 Msa0117510:intron 25.0%
!! TGTTTGACTTTGGAAAATAT+TGG + chr1_3:38471639-38471658 Msa0117510:intron 25.0%
! ATTAATGGTATAGTTGTGTT+TGG + chr1_3:38471685-38471704 Msa0117510:intron 25.0%
! CAATTCAAGGTACATATATA+AGG + chr1_3:38471797-38471816 Msa0117510:intron 25.0%
! ATATATAAGGCGAGATAATT+TGG + chr1_3:38471810-38471829 Msa0117510:intron 25.0%
!! AATTAGCAATAATGATGATG+TGG + chr1_3:38471922-38471941 Msa0117510:intron 25.0%
! TTATGCACTAGTAAAATCTT+AGG + chr1_3:38472006-38472025 Msa0117510:intron 25.0%
! CTAATAGCTAAACTTAATTC+AGG + chr1_3:38472119-38472138 Msa0117510:intron 25.0%
! TCAATCACTATGATGATAAA+GGG - chr1_3:38472193-38472212 None:intergenic 25.0%
! ATCAATCACTATGATGATAA+AGG - chr1_3:38472194-38472213 None:intergenic 25.0%
! TCATAGTGATTGATATTAAC+TGG + chr1_3:38472200-38472219 Msa0117510:intron 25.0%
!! TCTAAAGAAACTTTTTGTTG+TGG - chr1_3:38472430-38472449 None:intergenic 25.0%
!!! TATTGGTAATTTTGTATAGG+GGG + chr1_3:38472499-38472518 Msa0117510:three_prime_UTR 25.0%
!! TTTTGAAAAGAGTGAAAGAG+AGG - chr1_3:38468607-38468626 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr1_3:38468717-38468736 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr1_3:38468768-38468787 Msa0117510:intron 30.0%
CAAGAGAACAAAACAAAAGT+AGG - chr1_3:38468970-38468989 None:intergenic 30.0%
!!! AGATTTTGAAACAGTGAACT+AGG - chr1_3:38469184-38469203 None:intergenic 30.0%
TTATTAGAATCACCAGAAGA+AGG - chr1_3:38469220-38469239 None:intergenic 30.0%
!! GTTACTAAACATTTTTGGGA+TGG + chr1_3:38469241-38469260 Msa0117510:CDS 30.0%
!! TGTTCTAAGGAAATGAATTC+TGG + chr1_3:38469319-38469338 Msa0117510:CDS 30.0%
! AAGGAAATGAATTCTGGTTA+TGG + chr1_3:38469325-38469344 Msa0117510:CDS 30.0%
TCCAACATTTCCTTTCAAAA+TGG + chr1_3:38469514-38469533 Msa0117510:CDS 30.0%
!! ACCATTTTGAAAGGAAATGT+TGG - chr1_3:38469518-38469537 None:intergenic 30.0%
!!! TTTATTTTTGGCTTTCGCAT+TGG + chr1_3:38469581-38469600 Msa0117510:intron 30.0%
GTTTGGTTATTTATAGTTGC+AGG + chr1_3:38469758-38469777 Msa0117510:intron 30.0%
ATGGTGACATGTACAATTTA+TGG + chr1_3:38470111-38470130 Msa0117510:intron 30.0%
AGATTCACTCAATTCAAACT+AGG - chr1_3:38470213-38470232 None:intergenic 30.0%
!!! GGTAGAAAGTAGTTTTTTTG+TGG + chr1_3:38470241-38470260 Msa0117510:intron 30.0%
! AAGGGAAATAAAAGCATAAG+TGG - chr1_3:38470328-38470347 None:intergenic 30.0%
AATTCACAAAAGCTCATGTA+GGG - chr1_3:38470358-38470377 None:intergenic 30.0%
! TACAGTTTTTATACTTCCTC+CGG + chr1_3:38470485-38470504 Msa0117510:intron 30.0%
! ATTTTACAAGGAACAGAATC+TGG - chr1_3:38471319-38471338 None:intergenic 30.0%
TAAACAAAATCATACCCTCT+CGG - chr1_3:38471383-38471402 None:intergenic 30.0%
ATTTGTACCTTATCCATGTT+TGG - chr1_3:38471604-38471623 None:intergenic 30.0%
TTGACATTTCTTCATGTTCT+TGG + chr1_3:38471711-38471730 Msa0117510:intron 30.0%
AACTAATACATCAGACATGT+TGG + chr1_3:38471739-38471758 Msa0117510:CDS 30.0%
AATTTCCGTTTCACTTGTAA+GGG - chr1_3:38471853-38471872 None:intergenic 30.0%
AAATTTCCGTTTCACTTGTA+AGG - chr1_3:38471854-38471873 None:intergenic 30.0%
GATCGATAGTTACAATTTCA+GGG - chr1_3:38471880-38471899 None:intergenic 30.0%
TGATCGATAGTTACAATTTC+AGG - chr1_3:38471881-38471900 None:intergenic 30.0%
TAGCAACTGAGTTAAGTTAA+CGG - chr1_3:38472042-38472061 None:intergenic 30.0%
ACTGCAAGTAATAGAAAAAG+GGG - chr1_3:38472238-38472257 None:intergenic 30.0%
GACTGCAAGTAATAGAAAAA+GGG - chr1_3:38472239-38472258 None:intergenic 30.0%
AGAGAGAGATCAAAGTGAAA+GGG - chr1_3:38468876-38468895 None:intergenic 35.0%
AATTCAAAGAAGAGAAGAGG+TGG - chr1_3:38468934-38468953 None:intergenic 35.0%
AGAACCAATCCAATTCTTCT+GGG + chr1_3:38469137-38469156 Msa0117510:CDS 35.0%
!! TTCTGGTTCATCTTGTTCTA+AGG + chr1_3:38469306-38469325 Msa0117510:CDS 35.0%
! TATGGATGGTTCTTTTGGAT+TGG + chr1_3:38469399-38469418 Msa0117510:CDS 35.0%
!!! TTTTGGATTGGTTGGTTCAT+TGG + chr1_3:38469411-38469430 Msa0117510:CDS 35.0%
!! TTTGGATTGGTTGGTTCATT+GGG + chr1_3:38469412-38469431 Msa0117510:CDS 35.0%
TGGTTCAAATCTTCTTAGAC+AGG + chr1_3:38469468-38469487 Msa0117510:CDS 35.0%
GGTTCAAATCTTCTTAGACA+GGG + chr1_3:38469469-38469488 Msa0117510:CDS 35.0%
!! TTTGTTGTAGGGTGTTCTTT+TGG + chr1_3:38469924-38469943 Msa0117510:intron 35.0%
GTTAATTGCAATCACCTACA+AGG + chr1_3:38470040-38470059 Msa0117510:intron 35.0%
ATTGAGTGAATCTCAGCTTT+AGG + chr1_3:38470220-38470239 Msa0117510:intron 35.0%
TAATAGGATATGAAGGGGAT+TGG + chr1_3:38470280-38470299 Msa0117510:intron 35.0%
CAATTCACAAAAGCTCATGT+AGG - chr1_3:38470359-38470378 None:intergenic 35.0%
TTGTGAATTGTTCGCGAATT+AGG + chr1_3:38470369-38470388 Msa0117510:intron 35.0%
ATGTATGTGGTCTACATTGT+AGG + chr1_3:38470555-38470574 Msa0117510:intron 35.0%
TAATACAAATGTACTCCCTC+CGG - chr1_3:38470638-38470657 None:intergenic 35.0%
! TGGTAATGTTCATTAGTTGC+AGG + chr1_3:38470776-38470795 Msa0117510:intron 35.0%
GGTAATGTTCATTAGTTGCA+GGG + chr1_3:38470777-38470796 Msa0117510:intron 35.0%
GTGTTCAATCGGTTAATAGA+CGG - chr1_3:38470866-38470885 None:intergenic 35.0%
TATTAACCGATTGAACACTC+AGG + chr1_3:38470868-38470887 Msa0117510:CDS 35.0%
!! AGGAAGAAGCATTTCTTGAA+GGG - chr1_3:38470901-38470920 None:intergenic 35.0%
!! AAGGAAGAAGCATTTCTTGA+AGG - chr1_3:38470902-38470921 None:intergenic 35.0%
TTCAAGAAATGCTTCTTCCT+TGG + chr1_3:38470901-38470920 Msa0117510:CDS 35.0%
TCAAGAAATGCTTCTTCCTT+GGG + chr1_3:38470902-38470921 Msa0117510:CDS 35.0%
GATATGTGACAATATTCCCA+AGG - chr1_3:38470921-38470940 None:intergenic 35.0%
!! TATCTCTGAAATAGATAGCG+AGG + chr1_3:38470937-38470956 Msa0117510:CDS 35.0%
TATCGTTCCAAGAACTATAG+GGG - chr1_3:38471030-38471049 None:intergenic 35.0%
GTATCGTTCCAAGAACTATA+GGG - chr1_3:38471031-38471050 None:intergenic 35.0%
AGTATCGTTCCAAGAACTAT+AGG - chr1_3:38471032-38471051 None:intergenic 35.0%
TCATTCACAGAAAATCTCAG+TGG + chr1_3:38471055-38471074 Msa0117510:CDS 35.0%
AATCTCAGTGGTTTGAAAAG+AGG + chr1_3:38471067-38471086 Msa0117510:CDS 35.0%
ATCTCAGTGGTTTGAAAAGA+GGG + chr1_3:38471068-38471087 Msa0117510:CDS 35.0%
TCTGATATTCAGGTATGTGT+AGG + chr1_3:38471115-38471134 Msa0117510:intron 35.0%
! GAAGCTCACTTCACTTATTT+TGG + chr1_3:38471137-38471156 Msa0117510:intron 35.0%
!!! ATTTGTTTTACTCATCAGCG+TGG + chr1_3:38471199-38471218 Msa0117510:intron 35.0%
! CTTTTCGCTCGAATTTTACA+AGG - chr1_3:38471331-38471350 None:intergenic 35.0%
TGTAAAATTCGAGCGAAAAG+AGG + chr1_3:38471331-38471350 Msa0117510:CDS 35.0%
CTAAGATCAGTGAAAGAATG+AGG + chr1_3:38471560-38471579 Msa0117510:CDS 35.0%
AATGGTATAGTTGTGTTTGG+AGG + chr1_3:38471688-38471707 Msa0117510:intron 35.0%
!! AAGGCGAGATAATTTGGTTT+TGG + chr1_3:38471816-38471835 Msa0117510:intron 35.0%
! TGATGATGTGGAATTTCATG+TGG + chr1_3:38471934-38471953 Msa0117510:intron 35.0%
TCATTTCATTCTTAGAGACG+TGG - chr1_3:38471974-38471993 None:intergenic 35.0%
AGCAACTGAGTTAAGTTAAC+GGG - chr1_3:38472041-38472060 None:intergenic 35.0%
GGACTGCAAGTAATAGAAAA+AGG - chr1_3:38472240-38472259 None:intergenic 35.0%
GTTTGCTCGTTTATCACTTA+GGG - chr1_3:38472261-38472280 None:intergenic 35.0%
! AGTTTGCTCGTTTATCACTT+AGG - chr1_3:38472262-38472281 None:intergenic 35.0%
! ACCTACATGCTTTGAATTCA+GGG - chr1_3:38472402-38472421 None:intergenic 35.0%
!! AGAAACTTTTTGTTGTGGTG+AGG - chr1_3:38472425-38472444 None:intergenic 35.0%
GAGAGAGAGTTGTCAAAAAG+TGG - chr1_3:38468663-38468682 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr1_3:38468707-38468726 None:intergenic 40.0%
GAAAGGGACAAGGAAAGATA+GGG - chr1_3:38468860-38468879 None:intergenic 40.0%
TGAAAGGGACAAGGAAAGAT+AGG - chr1_3:38468861-38468880 None:intergenic 40.0%
AGATCAAAGTGAAAGGGACA+AGG - chr1_3:38468870-38468889 None:intergenic 40.0%
CAGAGAGAGATCAAAGTGAA+AGG - chr1_3:38468877-38468896 None:intergenic 40.0%
CGCAATTCAAAGAAGAGAAG+AGG - chr1_3:38468937-38468956 None:intergenic 40.0%
TTCAGCTTAGGAACAAAGCA+GGG - chr1_3:38469018-38469037 None:intergenic 40.0%
TTTCAGCTTAGGAACAAAGC+AGG - chr1_3:38469019-38469038 None:intergenic 40.0%
CAGAACCAATCCAATTCTTC+TGG + chr1_3:38469136-38469155 Msa0117510:CDS 40.0%
! ACACCTTCTTTTCCTTCTTC+TGG + chr1_3:38469205-38469224 Msa0117510:CDS 40.0%
TCACCAGAAGAAGGAAAAGA+AGG - chr1_3:38469211-38469230 None:intergenic 40.0%
! ATGAATTCTGGTTATGGTGC+TGG + chr1_3:38469331-38469350 Msa0117510:CDS 40.0%
! GAACCATGTCTAGGATAATG+AGG - chr1_3:38469364-38469383 None:intergenic 40.0%
!! TTCTGCTTCTAGTTCTGCTA+TGG + chr1_3:38469381-38469400 Msa0117510:CDS 40.0%
! TCTGCTATGGATGGTTCTTT+TGG + chr1_3:38469394-38469413 Msa0117510:CDS 40.0%
!!! GATGGTTCTTTTGGATTGGT+TGG + chr1_3:38469403-38469422 Msa0117510:CDS 40.0%
! ATTGGTTGGTTCATTGGGAA+TGG + chr1_3:38469417-38469436 Msa0117510:CDS 40.0%
CAAACCAAACCAAGTTGCTT+GGG - chr1_3:38469743-38469762 None:intergenic 40.0%
!! ATAGTTGCAGGGTGTTCTTT+TGG + chr1_3:38469770-38469789 Msa0117510:intron 40.0%
ACCTACAAGGCTAGAAATTG+TGG + chr1_3:38470053-38470072 Msa0117510:intron 40.0%
!! ACCACAATTTCTAGCCTTGT+AGG - chr1_3:38470057-38470076 None:intergenic 40.0%
CTCATGTAGGGTGACAAAAA+GGG - chr1_3:38470346-38470365 None:intergenic 40.0%
! CTCTCAGTACTTTTGCGAAT+TGG - chr1_3:38470400-38470419 None:intergenic 40.0%
!! TTCGCAAAAGTACTGAGAGT+TGG + chr1_3:38470401-38470420 Msa0117510:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1_3:38470619-38470638 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_3:38470619-38470638 Msa0117510:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_3:38470620-38470639 Msa0117510:intron 40.0%
TAACAACCTAAGATGCAGGT+GGG - chr1_3:38470710-38470729 None:intergenic 40.0%
TTAACAACCTAAGATGCAGG+TGG - chr1_3:38470711-38470730 None:intergenic 40.0%
GTCTTAACAACCTAAGATGC+AGG - chr1_3:38470714-38470733 None:intergenic 40.0%
ATAGTTTCCAACGCCTTTCA+TGG - chr1_3:38470810-38470829 None:intergenic 40.0%
AGGTAACCTGAGTGTTCAAT+CGG - chr1_3:38470877-38470896 None:intergenic 40.0%
!! AGAAGCATTTCTTGAAGGGA+AGG - chr1_3:38470897-38470916 None:intergenic 40.0%
AACGGTGATTCTACTCACTA+TGG + chr1_3:38470995-38471014 Msa0117510:CDS 40.0%
ATCATCTCAGATGACGTGTT+CGG - chr1_3:38471271-38471290 None:intergenic 40.0%
! GTCATCTGAGATGATTGCTA+TGG + chr1_3:38471276-38471295 Msa0117510:CDS 40.0%
GCTTGTTCCAAACATGGATA+AGG + chr1_3:38471594-38471613 Msa0117510:CDS 40.0%
TACATCAGACATGTTGGACT+TGG + chr1_3:38471745-38471764 Msa0117510:CDS 40.0%
GCAACTGAGTTAAGTTAACG+GGG - chr1_3:38472040-38472059 None:intergenic 40.0%
TTAACTCAGTTGCTATGACG+TGG + chr1_3:38472047-38472066 Msa0117510:intron 40.0%
! TCAGGGATGAATTTTACCGA+TGG + chr1_3:38472137-38472156 Msa0117510:intron 40.0%
GAGCAAACTGCAAATGTATG+AGG + chr1_3:38472273-38472292 Msa0117510:CDS 40.0%
CAAATGTATGAGGATGCAGA+AGG + chr1_3:38472283-38472302 Msa0117510:CDS 40.0%
ACCCTGAATTCAAAGCATGT+AGG + chr1_3:38472398-38472417 Msa0117510:three_prime_UTR 40.0%
! GACCTACATGCTTTGAATTC+AGG - chr1_3:38472403-38472422 None:intergenic 40.0%
AAGAAGAGAAGAGGTGGCTA+TGG - chr1_3:38468928-38468947 None:intergenic 45.0%
TCAGCTTAGGAACAAAGCAG+GGG - chr1_3:38469017-38469036 None:intergenic 45.0%
GCAACCCAGAAGAATTGGAT+TGG - chr1_3:38469144-38469163 None:intergenic 45.0%
ACGAAGCAACCCAGAAGAAT+TGG - chr1_3:38469149-38469168 None:intergenic 45.0%
! CCATGTCTAGGATAATGAGG+TGG - chr1_3:38469361-38469380 None:intergenic 45.0%
CCACCTCATTATCCTAGACA+TGG + chr1_3:38469358-38469377 Msa0117510:CDS 45.0%
CTAGAAGCAGAACCATGTCT+AGG - chr1_3:38469373-38469392 None:intergenic 45.0%
!! GCTTCTAGTTCTGCTATGGA+TGG + chr1_3:38469385-38469404 Msa0117510:CDS 45.0%
TGTTGGAGAAAAGACCAGCA+GGG - chr1_3:38469501-38469520 None:intergenic 45.0%
ATGTTGGAGAAAAGACCAGC+AGG - chr1_3:38469502-38469521 None:intergenic 45.0%
ATTAGTCGCCTACCATTGGT+GGG - chr1_3:38469614-38469633 None:intergenic 45.0%
CCAAACCAAACCAAGTTGCT+TGG - chr1_3:38469744-38469763 None:intergenic 45.0%
!! CCAAGCAACTTGGTTTGGTT+TGG + chr1_3:38469741-38469760 Msa0117510:intron 45.0%
GCTCATGTAGGGTGACAAAA+AGG - chr1_3:38470347-38470366 None:intergenic 45.0%
AGTACAAGTTCGTGGTTCTC+TGG + chr1_3:38470430-38470449 Msa0117510:CDS 45.0%
TGATATCCCACCTGCATCTT+AGG + chr1_3:38470701-38470720 Msa0117510:intron 45.0%
!! TTTTCTGCCATGAAAGGCGT+TGG + chr1_3:38470800-38470819 Msa0117510:CDS 45.0%
GGAAACTATGCCACGGTAAA+TGG + chr1_3:38470821-38470840 Msa0117510:CDS 45.0%
GTCGTTACTACCATTTACCG+TGG - chr1_3:38470834-38470853 None:intergenic 45.0%
GATTCTACTCACTATGGCTC+TGG + chr1_3:38471001-38471020 Msa0117510:CDS 45.0%
CTGGATTCCCCTATAGTTCT+TGG + chr1_3:38471020-38471039 Msa0117510:CDS 45.0%
! TGTTTTACTCATCAGCGTGG+AGG + chr1_3:38471202-38471221 Msa0117510:intron 45.0%
! GTTTTACTCATCAGCGTGGA+GGG + chr1_3:38471203-38471222 Msa0117510:intron 45.0%
! GCAAGAGCTTGTTCCAAACA+TGG + chr1_3:38471588-38471607 Msa0117510:CDS 45.0%
TCCCACCCTTACAAGTGAAA+CGG + chr1_3:38471845-38471864 Msa0117510:intron 45.0%
TCCGTTTCACTTGTAAGGGT+GGG - chr1_3:38471849-38471868 None:intergenic 45.0%
TTCCGTTTCACTTGTAAGGG+TGG - chr1_3:38471850-38471869 None:intergenic 45.0%
!!! TATTTATTTTACTTTATTTT+TGG + chr1_3:38469569-38469588 Msa0117510:intron 5.0%
GTTGGAGAAAAGACCAGCAG+GGG - chr1_3:38469500-38469519 None:intergenic 50.0%
! ATTGGTTTCCGACCCACCAA+TGG + chr1_3:38469599-38469618 Msa0117510:intron 50.0%
! GATTAGTCGCCTACCATTGG+TGG - chr1_3:38469615-38469634 None:intergenic 50.0%
CCAATGGTAGGCGACTAATC+CGG + chr1_3:38469615-38469634 Msa0117510:intron 50.0%
TTCCCACTGGGAATCGAACT+CGG + chr1_3:38469674-38469693 Msa0117510:CDS 50.0%
TACCGAGTTCGATTCCCAGT+GGG - chr1_3:38469679-38469698 None:intergenic 50.0%
ATACCGAGTTCGATTCCCAG+TGG - chr1_3:38469680-38469699 None:intergenic 50.0%
GAATCGAACTCGGTATTCCC+CGG + chr1_3:38469684-38469703 Msa0117510:CDS 50.0%
AATCGAACTCGGTATTCCCC+GGG + chr1_3:38469685-38469704 Msa0117510:CDS 50.0%
TGAGCCCAAGCAACTTGGTT+TGG + chr1_3:38469736-38469755 Msa0117510:CDS 50.0%
GGTATGCGAGTACAAGTTCG+TGG + chr1_3:38470422-38470441 Msa0117510:CDS 50.0%
TCGTGGTTCTCTGGTGAATG+CGG + chr1_3:38470439-38470458 Msa0117510:intron 50.0%
! GCAGGGTTTTCTGCCATGAA+AGG + chr1_3:38470794-38470813 Msa0117510:intron 50.0%
!! AGGCGTTGGAAACTATGCCA+CGG + chr1_3:38470814-38470833 Msa0117510:CDS 50.0%
GAAGCAACTAGCCCTGATGA+CGG + chr1_3:38470965-38470984 Msa0117510:CDS 50.0%
TTAGAGACGTGGCAGTGTTG+TGG - chr1_3:38471963-38471982 None:intergenic 50.0%
GTTTCCGACCCACCAATGGT+AGG + chr1_3:38469603-38469622 Msa0117510:intron 55.0%
!! CCGGATTAGTCGCCTACCAT+TGG - chr1_3:38469618-38469637 None:intergenic 55.0%
CTAATCCGGCTAGTGCGTAG+AGG + chr1_3:38469629-38469648 Msa0117510:intron 55.0%
TTCCCAGTGGGAACAACGCT+TGG - chr1_3:38469667-38469686 None:intergenic 55.0%
ACCAAGTTGCTTGGGCTCAG+TGG - chr1_3:38469735-38469754 None:intergenic 55.0%
CGTTGCTACCTCCGTCATCA+GGG - chr1_3:38470979-38470998 None:intergenic 55.0%
!! CCTGATGACGGAGGTAGCAA+CGG + chr1_3:38470977-38470996 Msa0117510:CDS 55.0%
!! ATCCTCGAAGCATTGCCGAG+AGG + chr1_3:38471365-38471384 Msa0117510:CDS 55.0%
!! TCCTCGAAGCATTGCCGAGA+GGG + chr1_3:38471366-38471385 Msa0117510:CDS 55.0%
AGACAGGGTAGTTCCCCTGC+TGG + chr1_3:38469484-38469503 Msa0117510:CDS 60.0%
! GTCGCCTACCATTGGTGGGT+CGG - chr1_3:38469610-38469629 None:intergenic 60.0%
GCATGCCTCTACGCACTAGC+CGG - chr1_3:38469637-38469656 None:intergenic 60.0%
! TGGCCAAGCGTTGTTCCCAC+TGG + chr1_3:38469661-38469680 Msa0117510:CDS 60.0%
! GGCCAAGCGTTGTTCCCACT+GGG + chr1_3:38469662-38469681 Msa0117510:CDS 60.0%
GTATTCCCCGGGAACGTCCT+TGG + chr1_3:38469696-38469715 Msa0117510:CDS 60.0%
TCCTTCCAAGGACGTTCCCG+GGG - chr1_3:38469704-38469723 None:intergenic 60.0%
CTCCTTCCAAGGACGTTCCC+GGG - chr1_3:38469705-38469724 None:intergenic 60.0%
GCTCCTTCCAAGGACGTTCC+CGG - chr1_3:38469706-38469725 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG - chr1_3:38469716-38469735 None:intergenic 60.0%
GTTGCTTGGGCTCAGTGGCA+AGG - chr1_3:38469730-38469749 None:intergenic 60.0%
GCCACTGAGCCCAAGCAACT+TGG + chr1_3:38469731-38469750 Msa0117510:CDS 60.0%
!! GCAACTAGCCCTGATGACGG+AGG + chr1_3:38470968-38470987 Msa0117510:CDS 60.0%
CCGTTGCTACCTCCGTCATC+AGG - chr1_3:38470980-38470999 None:intergenic 60.0%
ACTCATCAGCGTGGAGGGCT+TGG + chr1_3:38471208-38471227 Msa0117510:intron 60.0%
ACCCTCTCGGCAATGCTTCG+AGG - chr1_3:38471370-38471389 None:intergenic 60.0%
! GTGCGTAGAGGCATGCGCAC+TGG + chr1_3:38469641-38469660 Msa0117510:intron 65.0%
TCCCCGGGAACGTCCTTGGA+AGG + chr1_3:38469700-38469719 Msa0117510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 38468568 38472601 38468568 ID=Msa0117510;Name=Msa0117510
chr1_3 mRNA 38468568 38472601 38468568 ID=Msa0117510-mRNA-1;Parent=Msa0117510;Name=Msa0117510-mRNA-1;_AED=0.16;_eAED=0.16;_QI=364|0.62|0.77|0.77|0.87|0.77|9|273|435
chr1_3 exon 38468568 38468639 38468568 ID=Msa0117510-mRNA-1:exon:12020;Parent=Msa0117510-mRNA-1
chr1_3 exon 38468820 38469535 38468820 ID=Msa0117510-mRNA-1:exon:12021;Parent=Msa0117510-mRNA-1
chr1_3 exon 38469642 38469757 38469642 ID=Msa0117510-mRNA-1:exon:12022;Parent=Msa0117510-mRNA-1
chr1_3 exon 38470391 38470451 38470391 ID=Msa0117510-mRNA-1:exon:12023;Parent=Msa0117510-mRNA-1
chr1_3 exon 38470798 38471126 38470798 ID=Msa0117510-mRNA-1:exon:12024;Parent=Msa0117510-mRNA-1
chr1_3 exon 38471217 38471387 38471217 ID=Msa0117510-mRNA-1:exon:12025;Parent=Msa0117510-mRNA-1
chr1_3 exon 38471550 38471615 38471550 ID=Msa0117510-mRNA-1:exon:12026;Parent=Msa0117510-mRNA-1
chr1_3 exon 38471737 38471805 38471737 ID=Msa0117510-mRNA-1:exon:12027;Parent=Msa0117510-mRNA-1
chr1_3 exon 38472257 38472601 38472257 ID=Msa0117510-mRNA-1:exon:12028;Parent=Msa0117510-mRNA-1
chr1_3 five_prime_UTR 38468568 38468639 38468568 ID=Msa0117510-mRNA-1:five_prime_utr;Parent=Msa0117510-mRNA-1
chr1_3 five_prime_UTR 38468820 38469111 38468820 ID=Msa0117510-mRNA-1:five_prime_utr;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38469112 38469535 38469112 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38469642 38469757 38469642 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38470391 38470451 38470391 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38470798 38471126 38470798 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38471217 38471387 38471217 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38471550 38471615 38471550 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38471737 38471805 38471737 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 CDS 38472257 38472328 38472257 ID=Msa0117510-mRNA-1:cds;Parent=Msa0117510-mRNA-1
chr1_3 three_prime_UTR 38472329 38472601 38472329 ID=Msa0117510-mRNA-1:three_prime_utr;Parent=Msa0117510-mRNA-1
Gene Sequence

>Msa0117510

ATGGATTCTAATACTCATCAACAACAGAACCAATCCAATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTGTTTCAAAATCTCACACCTTCTTTTCCTTCTTCTGGTGATTCTAATAAAGTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTTGTGAGTAACGATAATAATAATATTTCTGGTTCATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGCTGGTTTGCCACCTCATTATCCTAGACATGGTTCTGCTTCTAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATCACATGATAAGAATTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGTGCGTAGAGGCATGCGCACTGGCCAAGCGTTGTTCCCACTGGGAATCGAACTCGGTATTCCCCGGGAACGTCCTTGGAAGGAGCTCCTTGCCACTGAGCCCAAGCAACTTGGTTTGGACGAACCAATTCGCAAAAGTACTGAGAGTTGGTATGCGAGTACAAGTTCGTGGTTCTCTGGGTTTTCTGCCATGAAAGGCGTTGGAAACTATGCCACGGTAAATGGTAGTAACGACGAACTTAGTCCGTCTATTAACCGATTGAACACTCAGGTTACCTTCCCTTCAAGAAATGCTTCTTCCTTGGGAATATTGTCACATATCTCTGAAATAGATAGCGAGGATATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAACGGTGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGATACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGCAGTAACGAAAAAATGTTTTCTGATATTCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCGAACACGTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAATACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGATAAACGAGCAAACTGCAAATGTATGAGGATGCAGAAGGCAGATACAAATCAAATTACTTGA
Protein sequence

>Msa0117510

MDSNTHQQQNQSNSSGLLRFRSAPSSLFQNLTPSFPSSGDSNKVTKHFWDGSESERFVSNDNNNISGSSCSKEMNSGYGAGLPPHYPRHGSASSSAMDGSFGLVGSLGMDQETSHDKNFGSNLLRQGSSPAGLFSNISFQNVRRGMRTGQALFPLGIELGIPRERPWKELLATEPKQLGLDEPIRKSTESWYASTSSWFSGFSAMKGVGNYATVNGSNDELSPSINRLNTQVTFPSRNASSLGILSHISEIDSEDIEATSPDDGGSNGDSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDIQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQKADTNQIT*