Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117900 | XP_013470158.1 | 86.528 | 193 | 2 | 1 | 1 | 169 | 1 | 193 | 5.62e-114 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117900 | A0A072VR88 | 86.528 | 193 | 2 | 1 | 1 | 169 | 1 | 193 | 2.68e-114 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117900 | Msa0182410 | 0.889599 | 2.096000e-73 | -8.615850e-47 |
| Msa0117900 | Msa1385010 | 0.801682 | 8.024774e-49 | -8.615850e-47 |
| Msa0117900 | Msa1404460 | 0.884801 | 1.405401e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117900 | MtrunA17_Chr1g0209281 | 86.528 | 193 | 2 | 1 | 1 | 169 | 1 | 193 | 5.17e-118 | 331 |
| Msa0117900 | MtrunA17_Chr1g0209321 | 42.328 | 189 | 80 | 4 | 1 | 167 | 1 | 182 | 1.72e-41 | 137 |
| Msa0117900 | MtrunA17_Chr5g0423771 | 37.278 | 169 | 82 | 1 | 9 | 153 | 12 | 180 | 1.08e-34 | 120 |
| Msa0117900 | MtrunA17_Chr2g0318011 | 43.293 | 164 | 69 | 1 | 7 | 146 | 6 | 169 | 2.88e-34 | 119 |
| Msa0117900 | MtrunA17_Chr4g0047771 | 39.645 | 169 | 76 | 3 | 1 | 145 | 1 | 167 | 2.31e-33 | 116 |
| Msa0117900 | MtrunA17_Chr1g0209301 | 65.882 | 85 | 28 | 1 | 82 | 165 | 21 | 105 | 4.51e-33 | 113 |
| Msa0117900 | MtrunA17_Chr1g0209311 | 53.086 | 81 | 36 | 1 | 1 | 81 | 1 | 79 | 2.31e-24 | 90.9 |
| Msa0117900 | MtrunA17_Chr1g0209291 | 43.434 | 99 | 51 | 2 | 1 | 99 | 1 | 94 | 1.83e-18 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117900 | AT1G68220.1 | 56.410 | 195 | 58 | 2 | 1 | 168 | 1 | 195 | 4.75e-71 | 213 |
| Msa0117900 | AT1G52910.1 | 41.714 | 175 | 76 | 3 | 1 | 150 | 1 | 174 | 8.82e-38 | 128 |
| Msa0117900 | AT3G15480.1 | 42.373 | 177 | 72 | 4 | 1 | 152 | 1 | 172 | 2.78e-36 | 124 |
| Msa0117900 | AT4G27435.1 | 42.038 | 157 | 67 | 1 | 10 | 142 | 9 | 165 | 6.74e-36 | 123 |
| Msa0117900 | AT1G13380.1 | 39.877 | 163 | 71 | 2 | 4 | 142 | 7 | 166 | 4.90e-31 | 111 |
| Msa0117900 | AT1G61065.1 | 37.725 | 167 | 77 | 3 | 17 | 159 | 16 | 179 | 7.97e-30 | 107 |
Find 45 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGCTGACACTGGTTTC+TGG | 0.168217 | 1_3:+40002774 | Msa0117900:CDS |
| CCAATCCAATGCCTTCATTT+TGG | 0.194665 | 1_3:-40002805 | None:intergenic |
| CGCAAAGGTGTGTTTGCTGC+TGG | 0.268553 | 1_3:+40002695 | Msa0117900:CDS |
| CTTCAGGGCTTATCAGATTC+AGG | 0.297517 | 1_3:-40002845 | None:intergenic |
| CTTGACCTTGTTCTCTATGT+TGG | 0.382330 | 1_3:+40002724 | Msa0117900:CDS |
| TACAGACACAGCCATGATTT+CGG | 0.392499 | 1_3:-40000887 | None:intergenic |
| GCAGAGGCGTGCTTGTTAGC+AGG | 0.394015 | 1_3:+40002599 | Msa0117900:intron |
| GCAAAGGTGTGTTTGCTGCT+GGG | 0.415418 | 1_3:+40002696 | Msa0117900:CDS |
| CAAGGCTGACACTGGTTTCT+GGG | 0.415808 | 1_3:+40002775 | Msa0117900:CDS |
| AACAAGCAATACAGAGTAAA+GGG | 0.418039 | 1_3:+40000835 | Msa0117900:five_prime_UTR |
| AATATCTTCAATTCAATGTC+TGG | 0.429834 | 1_3:-40000785 | None:intergenic |
| GAACAGTTTGACTGAGAAGC+AGG | 0.443123 | 1_3:-40001158 | None:intergenic |
| CAAATTGAACACCGAAATCA+TGG | 0.450311 | 1_3:+40000876 | Msa0117900:exon |
| CAAAGGTGTGTTTGCTGCTG+GGG | 0.452357 | 1_3:+40002697 | Msa0117900:CDS |
| GTTCTGTCATCGTACTCATC+AGG | 0.481402 | 1_3:-40001078 | None:intergenic |
| AGATGTCTTTGCTGTGGTAA+AGG | 0.489539 | 1_3:+40001195 | Msa0117900:CDS |
| AAACAAGCAATACAGAGTAA+AGG | 0.496962 | 1_3:+40000834 | Msa0117900:five_prime_UTR |
| GCTTGTTAGCAGGCTCTGCT+AGG | 0.513926 | 1_3:+40002609 | Msa0117900:CDS |
| AAGCACCAAAATGAAGGCAT+TGG | 0.516097 | 1_3:+40002800 | Msa0117900:CDS |
| TGGGAGAAGCACCAAAATGA+AGG | 0.543939 | 1_3:+40002794 | Msa0117900:CDS |
| ACCGACGCTTCCACCGTCTA+CGG | 0.546032 | 1_3:+40001117 | Msa0117900:CDS |
| CCAAAATGAAGGCATTGGAT+TGG | 0.547050 | 1_3:+40002805 | Msa0117900:CDS |
| CCCTCGGTACTTTGTGTGGT+AGG | 0.550996 | 1_3:-40002636 | None:intergenic |
| CCAGAAACCAGTGTCAGCCT+TGG | 0.551041 | 1_3:-40002774 | None:intergenic |
| ACCGTAGACGGTGGAAGCGT+CGG | 0.553614 | 1_3:-40001118 | None:intergenic |
| AATTCCCTCGGTACTTTGTG+TGG | 0.559584 | 1_3:-40002640 | None:intergenic |
| GCACACGCCAAGGCTGACAC+TGG | 0.573418 | 1_3:+40002767 | Msa0117900:CDS |
| CTGAATCTGATAAGCCCTGA+AGG | 0.582169 | 1_3:+40002846 | Msa0117900:CDS |
| GTACTATTGGGCACACGCCA+AGG | 0.584073 | 1_3:+40002757 | Msa0117900:CDS |
| GAAAGCAGCAACACCGTAGA+CGG | 0.587627 | 1_3:-40001130 | None:intergenic |
| CGCTGAACGACGTCGTAGTG+AGG | 0.588172 | 1_3:+40000966 | Msa0117900:CDS |
| GTACTCATCAGGAACCACTT+TGG | 0.600621 | 1_3:-40001067 | None:intergenic |
| AGAAGCCAACATAGAGAACA+AGG | 0.611678 | 1_3:-40002729 | None:intergenic |
| GTCACTAGATGTCTTTGCTG+TGG | 0.617569 | 1_3:+40001189 | Msa0117900:CDS |
| GTAGACGGTGGAAGCGTCGG+TGG | 0.622507 | 1_3:-40001115 | None:intergenic |
| CGTGTGTCACAAAATTCCCT+CGG | 0.630799 | 1_3:-40002652 | None:intergenic |
| CAACATAGAGAACAAGGTCA+AGG | 0.636116 | 1_3:-40002723 | None:intergenic |
| AGAGATGAAGAGAAATGATG+AGG | 0.636675 | 1_3:-40000921 | None:intergenic |
| TCTTGCGCTACACTTCGCAA+AGG | 0.645552 | 1_3:+40002680 | Msa0117900:CDS |
| GGATTGGCCACACACAATCA+CGG | 0.646265 | 1_3:+40002821 | Msa0117900:CDS |
| TTCAGGACCGTGATTGTGTG+TGG | 0.660100 | 1_3:-40002828 | None:intergenic |
| AGCAGCAACACCGTAGACGG+TGG | 0.660373 | 1_3:-40001127 | None:intergenic |
| GCCTACCACACAAAGTACCG+AGG | 0.682833 | 1_3:+40002635 | Msa0117900:CDS |
| CCTACCACACAAAGTACCGA+GGG | 0.685131 | 1_3:+40002636 | Msa0117900:CDS |
| ACAGCAAAGACATCTAGTGA+CGG | 0.697347 | 1_3:-40001187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATGTATTTACAAAAAAAA+GGG | - | chr1_3:40001320-40001339 | None:intergenic | 15.0% |
| !! | TTCATGTATTTACAAAAAAA+AGG | - | chr1_3:40001321-40001340 | None:intergenic | 15.0% |
| !! | AAGCAAAAAATAAATATGAT+GGG | - | chr1_3:40002274-40002293 | None:intergenic | 15.0% |
| !! | AAAGCAAAAAATAAATATGA+TGG | - | chr1_3:40002275-40002294 | None:intergenic | 15.0% |
| !! | TCATGTATTTACAAAAAAAA+GGG | - | chr1_3:40001320-40001339 | None:intergenic | 15.0% |
| !! | TTCATGTATTTACAAAAAAA+AGG | - | chr1_3:40001321-40001340 | None:intergenic | 15.0% |
| !! | AAGCAAAAAATAAATATGAT+GGG | - | chr1_3:40002274-40002293 | None:intergenic | 15.0% |
| !! | AAAGCAAAAAATAAATATGA+TGG | - | chr1_3:40002275-40002294 | None:intergenic | 15.0% |
| !!! | TTAGTGTTGAAATTAAAGAA+AGG | - | chr1_3:40001002-40001021 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGGGGTTTTTTAA+GGG | - | chr1_3:40001308-40001327 | None:intergenic | 20.0% |
| !! | CATGTATTTACAAAAAAAAG+GGG | - | chr1_3:40001319-40001338 | None:intergenic | 20.0% |
| !! | AAAATTAATTGTGTTGAATG+TGG | + | chr1_3:40001422-40001441 | Msa0117900:intron | 20.0% |
| !! | CTAAGTAATAATACAAAAGA+AGG | - | chr1_3:40002335-40002354 | None:intergenic | 20.0% |
| !! | CTTATACATATAAACACAAA+AGG | - | chr1_3:40002407-40002426 | None:intergenic | 20.0% |
| !!! | TTAGTGTTGAAATTAAAGAA+AGG | - | chr1_3:40001002-40001021 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGGGGTTTTTTAA+GGG | - | chr1_3:40001308-40001327 | None:intergenic | 20.0% |
| !! | CATGTATTTACAAAAAAAAG+GGG | - | chr1_3:40001319-40001338 | None:intergenic | 20.0% |
| !! | AAAATTAATTGTGTTGAATG+TGG | + | chr1_3:40001422-40001441 | Msa0117900:intron | 20.0% |
| !! | CTAAGTAATAATACAAAAGA+AGG | - | chr1_3:40002335-40002354 | None:intergenic | 20.0% |
| !! | CTTATACATATAAACACAAA+AGG | - | chr1_3:40002407-40002426 | None:intergenic | 20.0% |
| ! | AATATCTTCAATTCAATGTC+TGG | - | chr1_3:40000788-40000807 | None:intergenic | 25.0% |
| !! | AATCTGATTAATCTCTTTTC+AGG | + | chr1_3:40001044-40001063 | Msa0117900:intron | 25.0% |
| ! | AAATAAAAAGCTGTGAAGAT+TGG | - | chr1_3:40001283-40001302 | None:intergenic | 25.0% |
| !!! | AAAAAAAGGGGTTTTTTAAG+GGG | - | chr1_3:40001307-40001326 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAGGGGTTTTTTA+AGG | - | chr1_3:40001309-40001328 | None:intergenic | 25.0% |
| ! | GTGGTAATTTGATAAAAGTT+TGG | + | chr1_3:40001441-40001460 | Msa0117900:intron | 25.0% |
| ! | TCATGGTCTCAAATTATTAA+TGG | - | chr1_3:40001787-40001806 | None:intergenic | 25.0% |
| ! | TGATCATGTGAAAGAAAATA+GGG | - | chr1_3:40002141-40002160 | None:intergenic | 25.0% |
| ! | ATGATCATGTGAAAGAAAAT+AGG | - | chr1_3:40002142-40002161 | None:intergenic | 25.0% |
| ! | TCTCATAATGTTACAAAAAG+AGG | - | chr1_3:40002170-40002189 | None:intergenic | 25.0% |
| ! | TTTCACTAATTAGTAGAACT+AGG | + | chr1_3:40002207-40002226 | Msa0117900:intron | 25.0% |
| ! | TTCACTAATTAGTAGAACTA+GGG | + | chr1_3:40002208-40002227 | Msa0117900:intron | 25.0% |
| !!! | TAGACTTCTATATGTTTTTG+AGG | + | chr1_3:40002294-40002313 | Msa0117900:intron | 25.0% |
| ! | TTAGTTTACTAGTGATTTAG+TGG | + | chr1_3:40002351-40002370 | Msa0117900:intron | 25.0% |
| ! | AATCATCATTATTTCACTTC+AGG | - | chr1_3:40002538-40002557 | None:intergenic | 25.0% |
| ! | ATTATTGTTGCTGTAAAATC+AGG | + | chr1_3:40002561-40002580 | Msa0117900:intron | 25.0% |
| ! | AATATCTTCAATTCAATGTC+TGG | - | chr1_3:40000788-40000807 | None:intergenic | 25.0% |
| !! | AATCTGATTAATCTCTTTTC+AGG | + | chr1_3:40001044-40001063 | Msa0117900:intron | 25.0% |
| ! | AAATAAAAAGCTGTGAAGAT+TGG | - | chr1_3:40001283-40001302 | None:intergenic | 25.0% |
| !!! | AAAAAAAGGGGTTTTTTAAG+GGG | - | chr1_3:40001307-40001326 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAGGGGTTTTTTA+AGG | - | chr1_3:40001309-40001328 | None:intergenic | 25.0% |
| ! | GTGGTAATTTGATAAAAGTT+TGG | + | chr1_3:40001441-40001460 | Msa0117900:intron | 25.0% |
| ! | TCATGGTCTCAAATTATTAA+TGG | - | chr1_3:40001787-40001806 | None:intergenic | 25.0% |
| ! | TGATCATGTGAAAGAAAATA+GGG | - | chr1_3:40002141-40002160 | None:intergenic | 25.0% |
| ! | ATGATCATGTGAAAGAAAAT+AGG | - | chr1_3:40002142-40002161 | None:intergenic | 25.0% |
| ! | TCTCATAATGTTACAAAAAG+AGG | - | chr1_3:40002170-40002189 | None:intergenic | 25.0% |
| ! | TTTCACTAATTAGTAGAACT+AGG | + | chr1_3:40002207-40002226 | Msa0117900:intron | 25.0% |
| ! | TTCACTAATTAGTAGAACTA+GGG | + | chr1_3:40002208-40002227 | Msa0117900:intron | 25.0% |
| !!! | TAGACTTCTATATGTTTTTG+AGG | + | chr1_3:40002294-40002313 | Msa0117900:intron | 25.0% |
| ! | TTAGTTTACTAGTGATTTAG+TGG | + | chr1_3:40002351-40002370 | Msa0117900:intron | 25.0% |
| ! | AATCATCATTATTTCACTTC+AGG | - | chr1_3:40002538-40002557 | None:intergenic | 25.0% |
| ! | ATTATTGTTGCTGTAAAATC+AGG | + | chr1_3:40002561-40002580 | Msa0117900:intron | 25.0% |
| AAACAAGCAATACAGAGTAA+AGG | + | chr1_3:40000834-40000853 | Msa0117900:five_prime_UTR | 30.0% | |
| AACAAGCAATACAGAGTAAA+GGG | + | chr1_3:40000835-40000854 | Msa0117900:five_prime_UTR | 30.0% | |
| !! | TTAGCTTTCGTTTTTGCTAT+AGG | + | chr1_3:40000943-40000962 | Msa0117900:CDS | 30.0% |
| GAAGTCTTTGTACATGAATT+CGG | + | chr1_3:40001514-40001533 | Msa0117900:intron | 30.0% | |
| ATGCTGAGCTTGAAAAAATA+TGG | - | chr1_3:40001619-40001638 | None:intergenic | 30.0% | |
| AATTATTAATGGTGTCTACG+TGG | - | chr1_3:40001776-40001795 | None:intergenic | 30.0% | |
| TTTATTGATGTATGGAACCA+TGG | - | chr1_3:40001919-40001938 | None:intergenic | 30.0% | |
| !! | ATCTTGGCTTTATTGATGTA+TGG | - | chr1_3:40001927-40001946 | None:intergenic | 30.0% |
| GATCATGTGAAAGAAAATAG+GGG | - | chr1_3:40002140-40002159 | None:intergenic | 30.0% | |
| TAATTAGTGAAAGATCCTGA+GGG | - | chr1_3:40002199-40002218 | None:intergenic | 30.0% | |
| !! | CTATATGTTTTTGAGGATGA+AGG | + | chr1_3:40002301-40002320 | Msa0117900:intron | 30.0% |
| TCGAGATTCTATGTAAGATT+GGG | - | chr1_3:40002500-40002519 | None:intergenic | 30.0% | |
| ! | TGGCTTCTATTTTGTACTAT+TGG | + | chr1_3:40002744-40002763 | Msa0117900:CDS | 30.0% |
| ! | GGCTTCTATTTTGTACTATT+GGG | + | chr1_3:40002745-40002764 | Msa0117900:CDS | 30.0% |
| AAACAAGCAATACAGAGTAA+AGG | + | chr1_3:40000834-40000853 | Msa0117900:five_prime_UTR | 30.0% | |
| AACAAGCAATACAGAGTAAA+GGG | + | chr1_3:40000835-40000854 | Msa0117900:five_prime_UTR | 30.0% | |
| !! | TTAGCTTTCGTTTTTGCTAT+AGG | + | chr1_3:40000943-40000962 | Msa0117900:CDS | 30.0% |
| GAAGTCTTTGTACATGAATT+CGG | + | chr1_3:40001514-40001533 | Msa0117900:intron | 30.0% | |
| ATGCTGAGCTTGAAAAAATA+TGG | - | chr1_3:40001619-40001638 | None:intergenic | 30.0% | |
| AATTATTAATGGTGTCTACG+TGG | - | chr1_3:40001776-40001795 | None:intergenic | 30.0% | |
| TTTATTGATGTATGGAACCA+TGG | - | chr1_3:40001919-40001938 | None:intergenic | 30.0% | |
| !! | ATCTTGGCTTTATTGATGTA+TGG | - | chr1_3:40001927-40001946 | None:intergenic | 30.0% |
| GATCATGTGAAAGAAAATAG+GGG | - | chr1_3:40002140-40002159 | None:intergenic | 30.0% | |
| TAATTAGTGAAAGATCCTGA+GGG | - | chr1_3:40002199-40002218 | None:intergenic | 30.0% | |
| !! | CTATATGTTTTTGAGGATGA+AGG | + | chr1_3:40002301-40002320 | Msa0117900:intron | 30.0% |
| TCGAGATTCTATGTAAGATT+GGG | - | chr1_3:40002500-40002519 | None:intergenic | 30.0% | |
| ! | TGGCTTCTATTTTGTACTAT+TGG | + | chr1_3:40002744-40002763 | Msa0117900:CDS | 30.0% |
| ! | GGCTTCTATTTTGTACTATT+GGG | + | chr1_3:40002745-40002764 | Msa0117900:CDS | 30.0% |
| CAAATTGAACACCGAAATCA+TGG | + | chr1_3:40000876-40000895 | Msa0117900:exon | 35.0% | |
| AGAGATGAAGAGAAATGATG+AGG | - | chr1_3:40000924-40000943 | None:intergenic | 35.0% | |
| TCATCTTCTTCATTCTCTCA+TGG | + | chr1_3:40001250-40001269 | Msa0117900:intron | 35.0% | |
| CATTTATGTAGTTGGGACAT+TGG | - | chr1_3:40001714-40001733 | None:intergenic | 35.0% | |
| ! | CGTAAGTGTTGTATATGTGT+TGG | + | chr1_3:40001817-40001836 | Msa0117900:intron | 35.0% |
| ATGTGAAAGAAAATAGGGGA+AGG | - | chr1_3:40002136-40002155 | None:intergenic | 35.0% | |
| AATTAGTGAAAGATCCTGAG+GGG | - | chr1_3:40002198-40002217 | None:intergenic | 35.0% | |
| CTAATTAGTGAAAGATCCTG+AGG | - | chr1_3:40002200-40002219 | None:intergenic | 35.0% | |
| ! | TAGTAGAACTAGGGTTTTTC+CGG | + | chr1_3:40002217-40002236 | Msa0117900:intron | 35.0% |
| AACTGTAAGATCCTACAGAA+GGG | - | chr1_3:40002440-40002459 | None:intergenic | 35.0% | |
| ATTCTATGTAAGATTGGGAG+GGG | - | chr1_3:40002495-40002514 | None:intergenic | 35.0% | |
| GATTCTATGTAAGATTGGGA+GGG | - | chr1_3:40002496-40002515 | None:intergenic | 35.0% | |
| AGATTCTATGTAAGATTGGG+AGG | - | chr1_3:40002497-40002516 | None:intergenic | 35.0% | |
| CTCGAGATTCTATGTAAGAT+TGG | - | chr1_3:40002501-40002520 | None:intergenic | 35.0% | |
| !!! | TAAAATCAGGACCGGTTTTT+TGG | + | chr1_3:40002574-40002593 | Msa0117900:intron | 35.0% |
| CAAATTGAACACCGAAATCA+TGG | + | chr1_3:40000876-40000895 | Msa0117900:exon | 35.0% | |
| AGAGATGAAGAGAAATGATG+AGG | - | chr1_3:40000924-40000943 | None:intergenic | 35.0% | |
| TCATCTTCTTCATTCTCTCA+TGG | + | chr1_3:40001250-40001269 | Msa0117900:intron | 35.0% | |
| CATTTATGTAGTTGGGACAT+TGG | - | chr1_3:40001714-40001733 | None:intergenic | 35.0% | |
| ! | CGTAAGTGTTGTATATGTGT+TGG | + | chr1_3:40001817-40001836 | Msa0117900:intron | 35.0% |
| ATGTGAAAGAAAATAGGGGA+AGG | - | chr1_3:40002136-40002155 | None:intergenic | 35.0% | |
| AATTAGTGAAAGATCCTGAG+GGG | - | chr1_3:40002198-40002217 | None:intergenic | 35.0% | |
| CTAATTAGTGAAAGATCCTG+AGG | - | chr1_3:40002200-40002219 | None:intergenic | 35.0% | |
| ! | TAGTAGAACTAGGGTTTTTC+CGG | + | chr1_3:40002217-40002236 | Msa0117900:intron | 35.0% |
| AACTGTAAGATCCTACAGAA+GGG | - | chr1_3:40002440-40002459 | None:intergenic | 35.0% | |
| ATTCTATGTAAGATTGGGAG+GGG | - | chr1_3:40002495-40002514 | None:intergenic | 35.0% | |
| GATTCTATGTAAGATTGGGA+GGG | - | chr1_3:40002496-40002515 | None:intergenic | 35.0% | |
| AGATTCTATGTAAGATTGGG+AGG | - | chr1_3:40002497-40002516 | None:intergenic | 35.0% | |
| CTCGAGATTCTATGTAAGAT+TGG | - | chr1_3:40002501-40002520 | None:intergenic | 35.0% | |
| !!! | TAAAATCAGGACCGGTTTTT+TGG | + | chr1_3:40002574-40002593 | Msa0117900:intron | 35.0% |
| TACAGACACAGCCATGATTT+CGG | - | chr1_3:40000890-40000909 | None:intergenic | 40.0% | |
| !! | AATCTCTTTTCAGGCCAAAG+TGG | + | chr1_3:40001053-40001072 | Msa0117900:intron | 40.0% |
| ACAGCAAAGACATCTAGTGA+CGG | - | chr1_3:40001190-40001209 | None:intergenic | 40.0% | |
| ! | AGATGTCTTTGCTGTGGTAA+AGG | + | chr1_3:40001195-40001214 | Msa0117900:CDS | 40.0% |
| AACATCCAATGACATGTCGA+CGG | - | chr1_3:40001578-40001597 | None:intergenic | 40.0% | |
| TTATGTAGTTGGGACATTGG+TGG | - | chr1_3:40001711-40001730 | None:intergenic | 40.0% | |
| TGTCCCAACTACATAAATGC+AGG | + | chr1_3:40001715-40001734 | Msa0117900:intron | 40.0% | |
| GTCCCAACTACATAAATGCA+GGG | + | chr1_3:40001716-40001735 | Msa0117900:intron | 40.0% | |
| TCCCAACTACATAAATGCAG+GGG | + | chr1_3:40001717-40001736 | Msa0117900:intron | 40.0% | |
| TCCCCTGCATTTATGTAGTT+GGG | - | chr1_3:40001721-40001740 | None:intergenic | 40.0% | |
| ATCCCCTGCATTTATGTAGT+TGG | - | chr1_3:40001722-40001741 | None:intergenic | 40.0% | |
| ! | TTTGAGACCATGAAAGTGAG+AGG | + | chr1_3:40001794-40001813 | Msa0117900:intron | 40.0% |
| GTGTTGGACACAAATATGTG+TGG | + | chr1_3:40001833-40001852 | Msa0117900:intron | 40.0% | |
| GATCTTGAATACACTGCTTC+AGG | - | chr1_3:40001871-40001890 | None:intergenic | 40.0% | |
| ATCAATAAAGCCAAGATCGC+TGG | + | chr1_3:40001930-40001949 | Msa0117900:intron | 40.0% | |
| !! | TTGCAAGATCGCTTTTGCAA+CGG | + | chr1_3:40001999-40002018 | Msa0117900:intron | 40.0% |
| TGAATGGGAAAAGAGAGCTT+GGG | + | chr1_3:40002240-40002259 | Msa0117900:intron | 40.0% | |
| !! | AATAAATATGATGGGCCTCG+TGG | - | chr1_3:40002266-40002285 | None:intergenic | 40.0% |
| CAACTGTAAGATCCTACAGA+AGG | - | chr1_3:40002441-40002460 | None:intergenic | 40.0% | |
| GGTTGAAAGATCATAAGTCG+AGG | - | chr1_3:40002473-40002492 | None:intergenic | 40.0% | |
| TTCTATGTAAGATTGGGAGG+GGG | - | chr1_3:40002494-40002513 | None:intergenic | 40.0% | |
| TGTTGCTGTAAAATCAGGAC+CGG | + | chr1_3:40002566-40002585 | Msa0117900:intron | 40.0% | |
| CAACATAGAGAACAAGGTCA+AGG | - | chr1_3:40002726-40002745 | None:intergenic | 40.0% | |
| CTTGACCTTGTTCTCTATGT+TGG | + | chr1_3:40002724-40002743 | Msa0117900:CDS | 40.0% | |
| AGAAGCCAACATAGAGAACA+AGG | - | chr1_3:40002732-40002751 | None:intergenic | 40.0% | |
| ! | AAGCACCAAAATGAAGGCAT+TGG | + | chr1_3:40002800-40002819 | Msa0117900:CDS | 40.0% |
| ! | CCAATCCAATGCCTTCATTT+TGG | - | chr1_3:40002808-40002827 | None:intergenic | 40.0% |
| !! | CCAAAATGAAGGCATTGGAT+TGG | + | chr1_3:40002805-40002824 | Msa0117900:CDS | 40.0% |
| TACAGACACAGCCATGATTT+CGG | - | chr1_3:40000890-40000909 | None:intergenic | 40.0% | |
| !! | AATCTCTTTTCAGGCCAAAG+TGG | + | chr1_3:40001053-40001072 | Msa0117900:intron | 40.0% |
| ACAGCAAAGACATCTAGTGA+CGG | - | chr1_3:40001190-40001209 | None:intergenic | 40.0% | |
| ! | AGATGTCTTTGCTGTGGTAA+AGG | + | chr1_3:40001195-40001214 | Msa0117900:CDS | 40.0% |
| AACATCCAATGACATGTCGA+CGG | - | chr1_3:40001578-40001597 | None:intergenic | 40.0% | |
| TTATGTAGTTGGGACATTGG+TGG | - | chr1_3:40001711-40001730 | None:intergenic | 40.0% | |
| TGTCCCAACTACATAAATGC+AGG | + | chr1_3:40001715-40001734 | Msa0117900:intron | 40.0% | |
| GTCCCAACTACATAAATGCA+GGG | + | chr1_3:40001716-40001735 | Msa0117900:intron | 40.0% | |
| TCCCAACTACATAAATGCAG+GGG | + | chr1_3:40001717-40001736 | Msa0117900:intron | 40.0% | |
| TCCCCTGCATTTATGTAGTT+GGG | - | chr1_3:40001721-40001740 | None:intergenic | 40.0% | |
| ATCCCCTGCATTTATGTAGT+TGG | - | chr1_3:40001722-40001741 | None:intergenic | 40.0% | |
| ! | TTTGAGACCATGAAAGTGAG+AGG | + | chr1_3:40001794-40001813 | Msa0117900:intron | 40.0% |
| GTGTTGGACACAAATATGTG+TGG | + | chr1_3:40001833-40001852 | Msa0117900:intron | 40.0% | |
| GATCTTGAATACACTGCTTC+AGG | - | chr1_3:40001871-40001890 | None:intergenic | 40.0% | |
| ATCAATAAAGCCAAGATCGC+TGG | + | chr1_3:40001930-40001949 | Msa0117900:intron | 40.0% | |
| !! | TTGCAAGATCGCTTTTGCAA+CGG | + | chr1_3:40001999-40002018 | Msa0117900:intron | 40.0% |
| TGAATGGGAAAAGAGAGCTT+GGG | + | chr1_3:40002240-40002259 | Msa0117900:intron | 40.0% | |
| !! | AATAAATATGATGGGCCTCG+TGG | - | chr1_3:40002266-40002285 | None:intergenic | 40.0% |
| CAACTGTAAGATCCTACAGA+AGG | - | chr1_3:40002441-40002460 | None:intergenic | 40.0% | |
| GGTTGAAAGATCATAAGTCG+AGG | - | chr1_3:40002473-40002492 | None:intergenic | 40.0% | |
| TTCTATGTAAGATTGGGAGG+GGG | - | chr1_3:40002494-40002513 | None:intergenic | 40.0% | |
| TGTTGCTGTAAAATCAGGAC+CGG | + | chr1_3:40002566-40002585 | Msa0117900:intron | 40.0% | |
| CAACATAGAGAACAAGGTCA+AGG | - | chr1_3:40002726-40002745 | None:intergenic | 40.0% | |
| CTTGACCTTGTTCTCTATGT+TGG | + | chr1_3:40002724-40002743 | Msa0117900:CDS | 40.0% | |
| AGAAGCCAACATAGAGAACA+AGG | - | chr1_3:40002732-40002751 | None:intergenic | 40.0% | |
| ! | AAGCACCAAAATGAAGGCAT+TGG | + | chr1_3:40002800-40002819 | Msa0117900:CDS | 40.0% |
| ! | CCAATCCAATGCCTTCATTT+TGG | - | chr1_3:40002808-40002827 | None:intergenic | 40.0% |
| !! | CCAAAATGAAGGCATTGGAT+TGG | + | chr1_3:40002805-40002824 | Msa0117900:CDS | 40.0% |
| GTACTCATCAGGAACCACTT+TGG | - | chr1_3:40001070-40001089 | None:intergenic | 45.0% | |
| GTTCTGTCATCGTACTCATC+AGG | - | chr1_3:40001081-40001100 | None:intergenic | 45.0% | |
| GAACAGTTTGACTGAGAAGC+AGG | - | chr1_3:40001161-40001180 | None:intergenic | 45.0% | |
| GTCACTAGATGTCTTTGCTG+TGG | + | chr1_3:40001189-40001208 | Msa0117900:CDS | 45.0% | |
| TGTGGTAAAGGTCTCATCTC+TGG | + | chr1_3:40001207-40001226 | Msa0117900:intron | 45.0% | |
| ACATCCAATGACATGTCGAC+GGG | - | chr1_3:40001577-40001596 | None:intergenic | 45.0% | |
| GATTACGTGCAACCGAAATC+GGG | - | chr1_3:40001754-40001773 | None:intergenic | 45.0% | |
| GGATTACGTGCAACCGAAAT+CGG | - | chr1_3:40001755-40001774 | None:intergenic | 45.0% | |
| ACTTACGCCTCTCACTTTCA+TGG | - | chr1_3:40001804-40001823 | None:intergenic | 45.0% | |
| GTGTATTCAAGATCGTGAGC+TGG | + | chr1_3:40001877-40001896 | Msa0117900:intron | 45.0% | |
| AATAAAGCCAAGATCGCTGG+AGG | + | chr1_3:40001933-40001952 | Msa0117900:intron | 45.0% | |
| !! | TGCAAGATCGCTTTTGCAAC+GGG | + | chr1_3:40002000-40002019 | Msa0117900:intron | 45.0% |
| ATATGAACGCCATCACAGAG+AGG | - | chr1_3:40002043-40002062 | None:intergenic | 45.0% | |
| TGTGAGAACTGCGTCAGAAT+GGG | - | chr1_3:40002077-40002096 | None:intergenic | 45.0% | |
| ATGTGAGAACTGCGTCAGAA+TGG | - | chr1_3:40002078-40002097 | None:intergenic | 45.0% | |
| AAAATAGGGGAAGGCAGAGA+AGG | - | chr1_3:40002127-40002146 | None:intergenic | 45.0% | |
| ATTATGAGAGTTGACCCCTC+AGG | + | chr1_3:40002181-40002200 | Msa0117900:intron | 45.0% | |
| ! | ACTAGGGTTTTTCCGGTGAA+TGG | + | chr1_3:40002224-40002243 | Msa0117900:intron | 45.0% |
| ! | CTAGGGTTTTTCCGGTGAAT+GGG | + | chr1_3:40002225-40002244 | Msa0117900:intron | 45.0% |
| ! | AGCTCTCTTTTCCCATTCAC+CGG | - | chr1_3:40002239-40002258 | None:intergenic | 45.0% |
| GTGAATGGGAAAAGAGAGCT+TGG | + | chr1_3:40002239-40002258 | Msa0117900:intron | 45.0% | |
| ! | GCACAATTTTGCCCTTCTGT+AGG | + | chr1_3:40002426-40002445 | Msa0117900:intron | 45.0% |
| AATTCCCTCGGTACTTTGTG+TGG | - | chr1_3:40002643-40002662 | None:intergenic | 45.0% | |
| CGTGTGTCACAAAATTCCCT+CGG | - | chr1_3:40002655-40002674 | None:intergenic | 45.0% | |
| !! | TGGGAGAAGCACCAAAATGA+AGG | + | chr1_3:40002794-40002813 | Msa0117900:CDS | 45.0% |
| GTACTCATCAGGAACCACTT+TGG | - | chr1_3:40001070-40001089 | None:intergenic | 45.0% | |
| GTTCTGTCATCGTACTCATC+AGG | - | chr1_3:40001081-40001100 | None:intergenic | 45.0% | |
| GAACAGTTTGACTGAGAAGC+AGG | - | chr1_3:40001161-40001180 | None:intergenic | 45.0% | |
| GTCACTAGATGTCTTTGCTG+TGG | + | chr1_3:40001189-40001208 | Msa0117900:CDS | 45.0% | |
| TGTGGTAAAGGTCTCATCTC+TGG | + | chr1_3:40001207-40001226 | Msa0117900:intron | 45.0% | |
| ACATCCAATGACATGTCGAC+GGG | - | chr1_3:40001577-40001596 | None:intergenic | 45.0% | |
| GATTACGTGCAACCGAAATC+GGG | - | chr1_3:40001754-40001773 | None:intergenic | 45.0% | |
| GGATTACGTGCAACCGAAAT+CGG | - | chr1_3:40001755-40001774 | None:intergenic | 45.0% | |
| ACTTACGCCTCTCACTTTCA+TGG | - | chr1_3:40001804-40001823 | None:intergenic | 45.0% | |
| GTGTATTCAAGATCGTGAGC+TGG | + | chr1_3:40001877-40001896 | Msa0117900:intron | 45.0% | |
| AATAAAGCCAAGATCGCTGG+AGG | + | chr1_3:40001933-40001952 | Msa0117900:intron | 45.0% | |
| !! | TGCAAGATCGCTTTTGCAAC+GGG | + | chr1_3:40002000-40002019 | Msa0117900:intron | 45.0% |
| ATATGAACGCCATCACAGAG+AGG | - | chr1_3:40002043-40002062 | None:intergenic | 45.0% | |
| TGTGAGAACTGCGTCAGAAT+GGG | - | chr1_3:40002077-40002096 | None:intergenic | 45.0% | |
| ATGTGAGAACTGCGTCAGAA+TGG | - | chr1_3:40002078-40002097 | None:intergenic | 45.0% | |
| AAAATAGGGGAAGGCAGAGA+AGG | - | chr1_3:40002127-40002146 | None:intergenic | 45.0% | |
| ATTATGAGAGTTGACCCCTC+AGG | + | chr1_3:40002181-40002200 | Msa0117900:intron | 45.0% | |
| ! | ACTAGGGTTTTTCCGGTGAA+TGG | + | chr1_3:40002224-40002243 | Msa0117900:intron | 45.0% |
| ! | CTAGGGTTTTTCCGGTGAAT+GGG | + | chr1_3:40002225-40002244 | Msa0117900:intron | 45.0% |
| ! | AGCTCTCTTTTCCCATTCAC+CGG | - | chr1_3:40002239-40002258 | None:intergenic | 45.0% |
| GTGAATGGGAAAAGAGAGCT+TGG | + | chr1_3:40002239-40002258 | Msa0117900:intron | 45.0% | |
| ! | GCACAATTTTGCCCTTCTGT+AGG | + | chr1_3:40002426-40002445 | Msa0117900:intron | 45.0% |
| AATTCCCTCGGTACTTTGTG+TGG | - | chr1_3:40002643-40002662 | None:intergenic | 45.0% | |
| CGTGTGTCACAAAATTCCCT+CGG | - | chr1_3:40002655-40002674 | None:intergenic | 45.0% | |
| !! | TGGGAGAAGCACCAAAATGA+AGG | + | chr1_3:40002794-40002813 | Msa0117900:CDS | 45.0% |
| GAAAGCAGCAACACCGTAGA+CGG | - | chr1_3:40001133-40001152 | None:intergenic | 50.0% | |
| GAAGAAGATGACAGCGCAAG+TGG | - | chr1_3:40001241-40001260 | None:intergenic | 50.0% | |
| CATCCAATGACATGTCGACG+GGG | - | chr1_3:40001576-40001595 | None:intergenic | 50.0% | |
| ! | GATTGCCGATTGCCCGATTT+CGG | + | chr1_3:40001739-40001758 | Msa0117900:intron | 50.0% |
| TGCAACCGAAATCGGGCAAT+CGG | - | chr1_3:40001747-40001766 | None:intergenic | 50.0% | |
| ! | AAGATCGTGAGCTGGCTCAT+AGG | + | chr1_3:40001885-40001904 | Msa0117900:intron | 50.0% |
| GATGTATGGAACCATGGCCA+TGG | - | chr1_3:40001913-40001932 | None:intergenic | 50.0% | |
| !! | TGGTCGAACTCTGGAGTTTG+AGG | + | chr1_3:40001971-40001990 | Msa0117900:intron | 50.0% |
| !! | TCGAACTCTGGAGTTTGAGG+TGG | + | chr1_3:40001974-40001993 | Msa0117900:intron | 50.0% |
| !! | GCTTTTGCAACGGGCTTTCA+CGG | + | chr1_3:40002009-40002028 | Msa0117900:intron | 50.0% |
| AGAAGGAGAGCAGATCGCAA+GGG | - | chr1_3:40002110-40002129 | None:intergenic | 50.0% | |
| !! | CCTACCACACAAAGTACCGA+GGG | + | chr1_3:40002636-40002655 | Msa0117900:CDS | 50.0% |
| TCTTGCGCTACACTTCGCAA+AGG | + | chr1_3:40002680-40002699 | Msa0117900:CDS | 50.0% | |
| ! | GCAAAGGTGTGTTTGCTGCT+GGG | + | chr1_3:40002696-40002715 | Msa0117900:CDS | 50.0% |
| ! | CAAAGGTGTGTTTGCTGCTG+GGG | + | chr1_3:40002697-40002716 | Msa0117900:CDS | 50.0% |
| !! | CAAGGCTGACACTGGTTTCT+GGG | + | chr1_3:40002775-40002794 | Msa0117900:CDS | 50.0% |
| !! | GGATTGGCCACACACAATCA+CGG | + | chr1_3:40002821-40002840 | Msa0117900:CDS | 50.0% |
| TTCAGGACCGTGATTGTGTG+TGG | - | chr1_3:40002831-40002850 | None:intergenic | 50.0% | |
| GAAAGCAGCAACACCGTAGA+CGG | - | chr1_3:40001133-40001152 | None:intergenic | 50.0% | |
| GAAGAAGATGACAGCGCAAG+TGG | - | chr1_3:40001241-40001260 | None:intergenic | 50.0% | |
| CATCCAATGACATGTCGACG+GGG | - | chr1_3:40001576-40001595 | None:intergenic | 50.0% | |
| ! | GATTGCCGATTGCCCGATTT+CGG | + | chr1_3:40001739-40001758 | Msa0117900:intron | 50.0% |
| TGCAACCGAAATCGGGCAAT+CGG | - | chr1_3:40001747-40001766 | None:intergenic | 50.0% | |
| ! | AAGATCGTGAGCTGGCTCAT+AGG | + | chr1_3:40001885-40001904 | Msa0117900:intron | 50.0% |
| GATGTATGGAACCATGGCCA+TGG | - | chr1_3:40001913-40001932 | None:intergenic | 50.0% | |
| !! | TGGTCGAACTCTGGAGTTTG+AGG | + | chr1_3:40001971-40001990 | Msa0117900:intron | 50.0% |
| !! | TCGAACTCTGGAGTTTGAGG+TGG | + | chr1_3:40001974-40001993 | Msa0117900:intron | 50.0% |
| !! | GCTTTTGCAACGGGCTTTCA+CGG | + | chr1_3:40002009-40002028 | Msa0117900:intron | 50.0% |
| AGAAGGAGAGCAGATCGCAA+GGG | - | chr1_3:40002110-40002129 | None:intergenic | 50.0% | |
| !! | CCTACCACACAAAGTACCGA+GGG | + | chr1_3:40002636-40002655 | Msa0117900:CDS | 50.0% |
| TCTTGCGCTACACTTCGCAA+AGG | + | chr1_3:40002680-40002699 | Msa0117900:CDS | 50.0% | |
| ! | GCAAAGGTGTGTTTGCTGCT+GGG | + | chr1_3:40002696-40002715 | Msa0117900:CDS | 50.0% |
| ! | CAAAGGTGTGTTTGCTGCTG+GGG | + | chr1_3:40002697-40002716 | Msa0117900:CDS | 50.0% |
| !! | CAAGGCTGACACTGGTTTCT+GGG | + | chr1_3:40002775-40002794 | Msa0117900:CDS | 50.0% |
| !! | GGATTGGCCACACACAATCA+CGG | + | chr1_3:40002821-40002840 | Msa0117900:CDS | 50.0% |
| TTCAGGACCGTGATTGTGTG+TGG | - | chr1_3:40002831-40002850 | None:intergenic | 50.0% | |
| TCGGATTGCTTTCCCGCAGT+TGG | + | chr1_3:40001533-40001552 | Msa0117900:intron | 55.0% | |
| TGAGGGTCAACTGCCAACTG+CGG | - | chr1_3:40001549-40001568 | None:intergenic | 55.0% | |
| CATGTCGACGGGGTGAATGA+GGG | - | chr1_3:40001566-40001585 | None:intergenic | 55.0% | |
| ACATGTCGACGGGGTGAATG+AGG | - | chr1_3:40001567-40001586 | None:intergenic | 55.0% | |
| TCACCCCGTCGACATGTCAT+TGG | + | chr1_3:40001570-40001589 | Msa0117900:intron | 55.0% | |
| ! | GAGCTGGCTCATAGGATCCA+TGG | + | chr1_3:40001893-40001912 | Msa0117900:intron | 55.0% |
| GCTCATAGGATCCATGGCCA+TGG | + | chr1_3:40001899-40001918 | Msa0117900:intron | 55.0% | |
| TGCACGATGTGGTCGAACTC+TGG | + | chr1_3:40001962-40001981 | Msa0117900:intron | 55.0% | |
| TGAACGCCATCACAGAGAGG+AGG | - | chr1_3:40002040-40002059 | None:intergenic | 55.0% | |
| AACTGCGTCAGAATGGGTGG+CGG | - | chr1_3:40002071-40002090 | None:intergenic | 55.0% | |
| GAGAACTGCGTCAGAATGGG+TGG | - | chr1_3:40002074-40002093 | None:intergenic | 55.0% | |
| GAAGGAGAGCAGATCGCAAG+GGG | - | chr1_3:40002109-40002128 | None:intergenic | 55.0% | |
| GAGAAGGAGAGCAGATCGCA+AGG | - | chr1_3:40002111-40002130 | None:intergenic | 55.0% | |
| AAAAGAGAGCTTGGGCCACG+AGG | + | chr1_3:40002248-40002267 | Msa0117900:intron | 55.0% | |
| !!! | GACCGGTTTTTTGGCAGCAG+AGG | + | chr1_3:40002583-40002602 | Msa0117900:intron | 55.0% |
| CGCCTCTGCTGCCAAAAAAC+CGG | - | chr1_3:40002588-40002607 | None:intergenic | 55.0% | |
| ! | GCTTGTTAGCAGGCTCTGCT+AGG | + | chr1_3:40002609-40002628 | Msa0117900:CDS | 55.0% |
| !! | GCCTACCACACAAAGTACCG+AGG | + | chr1_3:40002635-40002654 | Msa0117900:CDS | 55.0% |
| CCCTCGGTACTTTGTGTGGT+AGG | - | chr1_3:40002639-40002658 | None:intergenic | 55.0% | |
| ! | CGCAAAGGTGTGTTTGCTGC+TGG | + | chr1_3:40002695-40002714 | Msa0117900:CDS | 55.0% |
| GTACTATTGGGCACACGCCA+AGG | + | chr1_3:40002757-40002776 | Msa0117900:CDS | 55.0% | |
| CCAGAAACCAGTGTCAGCCT+TGG | - | chr1_3:40002777-40002796 | None:intergenic | 55.0% | |
| !! | CCAAGGCTGACACTGGTTTC+TGG | + | chr1_3:40002774-40002793 | Msa0117900:CDS | 55.0% |
| TCGGATTGCTTTCCCGCAGT+TGG | + | chr1_3:40001533-40001552 | Msa0117900:intron | 55.0% | |
| TGAGGGTCAACTGCCAACTG+CGG | - | chr1_3:40001549-40001568 | None:intergenic | 55.0% | |
| CATGTCGACGGGGTGAATGA+GGG | - | chr1_3:40001566-40001585 | None:intergenic | 55.0% | |
| ACATGTCGACGGGGTGAATG+AGG | - | chr1_3:40001567-40001586 | None:intergenic | 55.0% | |
| TCACCCCGTCGACATGTCAT+TGG | + | chr1_3:40001570-40001589 | Msa0117900:intron | 55.0% | |
| ! | GAGCTGGCTCATAGGATCCA+TGG | + | chr1_3:40001893-40001912 | Msa0117900:intron | 55.0% |
| GCTCATAGGATCCATGGCCA+TGG | + | chr1_3:40001899-40001918 | Msa0117900:intron | 55.0% | |
| TGCACGATGTGGTCGAACTC+TGG | + | chr1_3:40001962-40001981 | Msa0117900:intron | 55.0% | |
| TGAACGCCATCACAGAGAGG+AGG | - | chr1_3:40002040-40002059 | None:intergenic | 55.0% | |
| AACTGCGTCAGAATGGGTGG+CGG | - | chr1_3:40002071-40002090 | None:intergenic | 55.0% | |
| GAGAACTGCGTCAGAATGGG+TGG | - | chr1_3:40002074-40002093 | None:intergenic | 55.0% | |
| GAAGGAGAGCAGATCGCAAG+GGG | - | chr1_3:40002109-40002128 | None:intergenic | 55.0% | |
| GAGAAGGAGAGCAGATCGCA+AGG | - | chr1_3:40002111-40002130 | None:intergenic | 55.0% | |
| AAAAGAGAGCTTGGGCCACG+AGG | + | chr1_3:40002248-40002267 | Msa0117900:intron | 55.0% | |
| !!! | GACCGGTTTTTTGGCAGCAG+AGG | + | chr1_3:40002583-40002602 | Msa0117900:intron | 55.0% |
| CGCCTCTGCTGCCAAAAAAC+CGG | - | chr1_3:40002588-40002607 | None:intergenic | 55.0% | |
| ! | GCTTGTTAGCAGGCTCTGCT+AGG | + | chr1_3:40002609-40002628 | Msa0117900:CDS | 55.0% |
| !! | GCCTACCACACAAAGTACCG+AGG | + | chr1_3:40002635-40002654 | Msa0117900:CDS | 55.0% |
| CCCTCGGTACTTTGTGTGGT+AGG | - | chr1_3:40002639-40002658 | None:intergenic | 55.0% | |
| ! | CGCAAAGGTGTGTTTGCTGC+TGG | + | chr1_3:40002695-40002714 | Msa0117900:CDS | 55.0% |
| GTACTATTGGGCACACGCCA+AGG | + | chr1_3:40002757-40002776 | Msa0117900:CDS | 55.0% | |
| CCAGAAACCAGTGTCAGCCT+TGG | - | chr1_3:40002777-40002796 | None:intergenic | 55.0% | |
| !! | CCAAGGCTGACACTGGTTTC+TGG | + | chr1_3:40002774-40002793 | Msa0117900:CDS | 55.0% |
| CGCTGAACGACGTCGTAGTG+AGG | + | chr1_3:40000966-40000985 | Msa0117900:CDS | 60.0% | |
| ACCGACGCTTCCACCGTCTA+CGG | + | chr1_3:40001117-40001136 | Msa0117900:CDS | 60.0% | |
| ! | ACCGTAGACGGTGGAAGCGT+CGG | - | chr1_3:40001121-40001140 | None:intergenic | 60.0% |
| AGCAGCAACACCGTAGACGG+TGG | - | chr1_3:40001130-40001149 | None:intergenic | 60.0% | |
| GAGGGTCAACTGCCAACTGC+GGG | - | chr1_3:40001548-40001567 | None:intergenic | 60.0% | |
| ACGTGCACCTCCAGCGATCT+TGG | - | chr1_3:40001943-40001962 | None:intergenic | 60.0% | |
| GTCCCTCCTCCTCTCTGTGA+TGG | + | chr1_3:40002031-40002050 | Msa0117900:intron | 60.0% | |
| CGCCATCACAGAGAGGAGGA+GGG | - | chr1_3:40002036-40002055 | None:intergenic | 60.0% | |
| ACGCCATCACAGAGAGGAGG+AGG | - | chr1_3:40002037-40002056 | None:intergenic | 60.0% | |
| ! | GCAGAGGCGTGCTTGTTAGC+AGG | + | chr1_3:40002599-40002618 | Msa0117900:intron | 60.0% |
| CGCTGAACGACGTCGTAGTG+AGG | + | chr1_3:40000966-40000985 | Msa0117900:CDS | 60.0% | |
| ACCGACGCTTCCACCGTCTA+CGG | + | chr1_3:40001117-40001136 | Msa0117900:CDS | 60.0% | |
| ! | ACCGTAGACGGTGGAAGCGT+CGG | - | chr1_3:40001121-40001140 | None:intergenic | 60.0% |
| AGCAGCAACACCGTAGACGG+TGG | - | chr1_3:40001130-40001149 | None:intergenic | 60.0% | |
| GAGGGTCAACTGCCAACTGC+GGG | - | chr1_3:40001548-40001567 | None:intergenic | 60.0% | |
| ACGTGCACCTCCAGCGATCT+TGG | - | chr1_3:40001943-40001962 | None:intergenic | 60.0% | |
| GTCCCTCCTCCTCTCTGTGA+TGG | + | chr1_3:40002031-40002050 | Msa0117900:intron | 60.0% | |
| CGCCATCACAGAGAGGAGGA+GGG | - | chr1_3:40002036-40002055 | None:intergenic | 60.0% | |
| ACGCCATCACAGAGAGGAGG+AGG | - | chr1_3:40002037-40002056 | None:intergenic | 60.0% | |
| ! | GCAGAGGCGTGCTTGTTAGC+AGG | + | chr1_3:40002599-40002618 | Msa0117900:intron | 60.0% |
| !! | GTAGACGGTGGAAGCGTCGG+TGG | - | chr1_3:40001118-40001137 | None:intergenic | 65.0% |
| ! | GGAGGTGCACGTGCACGATG+TGG | + | chr1_3:40001951-40001970 | Msa0117900:intron | 65.0% |
| GGAGAGCAGATCGCAAGGGG+CGG | - | chr1_3:40002106-40002125 | None:intergenic | 65.0% | |
| GCACACGCCAAGGCTGACAC+TGG | + | chr1_3:40002767-40002786 | Msa0117900:CDS | 65.0% | |
| !! | GTAGACGGTGGAAGCGTCGG+TGG | - | chr1_3:40001118-40001137 | None:intergenic | 65.0% |
| ! | GGAGGTGCACGTGCACGATG+TGG | + | chr1_3:40001951-40001970 | Msa0117900:intron | 65.0% |
| GGAGAGCAGATCGCAAGGGG+CGG | - | chr1_3:40002106-40002125 | None:intergenic | 65.0% | |
| GCACACGCCAAGGCTGACAC+TGG | + | chr1_3:40002767-40002786 | Msa0117900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40000749 | 40002865 | 40000749 | ID=Msa0117900;Name=Msa0117900 |
| chr1_3 | mRNA | 40000749 | 40002865 | 40000749 | ID=Msa0117900-mRNA-1;Parent=Msa0117900;Name=Msa0117900-mRNA-1;_AED=0.26;_eAED=0.26;_QI=146|0.5|0.33|1|1|1|3|0|169 |
| chr1_3 | exon | 40000749 | 40000987 | 40000749 | ID=Msa0117900-mRNA-1:exon:12247;Parent=Msa0117900-mRNA-1 |
| chr1_3 | exon | 40001066 | 40001216 | 40001066 | ID=Msa0117900-mRNA-1:exon:12248;Parent=Msa0117900-mRNA-1 |
| chr1_3 | exon | 40002600 | 40002865 | 40002600 | ID=Msa0117900-mRNA-1:exon:12249;Parent=Msa0117900-mRNA-1 |
| chr1_3 | five_prime_UTR | 40000749 | 40000894 | 40000749 | ID=Msa0117900-mRNA-1:five_prime_utr;Parent=Msa0117900-mRNA-1 |
| chr1_3 | CDS | 40000895 | 40000987 | 40000895 | ID=Msa0117900-mRNA-1:cds;Parent=Msa0117900-mRNA-1 |
| chr1_3 | CDS | 40001066 | 40001216 | 40001066 | ID=Msa0117900-mRNA-1:cds;Parent=Msa0117900-mRNA-1 |
| chr1_3 | CDS | 40002600 | 40002865 | 40002600 | ID=Msa0117900-mRNA-1:cds;Parent=Msa0117900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
