Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182410 | XP_013470158.1 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 2.32e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182410 | A0A072VR88 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 1.11e-137 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043300 | Msa0182410 | 0.837378 | 5.385338e-57 | -8.615850e-47 |
| Msa0093880 | Msa0182410 | 0.808398 | 3.157845e-50 | -8.615850e-47 |
| Msa0117900 | Msa0182410 | 0.889599 | 2.096000e-73 | -8.615850e-47 |
| Msa0182410 | Msa0305750 | 0.832672 | 8.270867e-56 | -8.615850e-47 |
| Msa0182410 | Msa1404460 | 0.986415 | 1.038277e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182410 | MtrunA17_Chr1g0209281 | 98.964 | 193 | 2 | 0 | 1 | 193 | 1 | 193 | 2.13e-141 | 391 |
| Msa0182410 | MtrunA17_Chr1g0209321 | 46.114 | 193 | 91 | 4 | 1 | 191 | 1 | 182 | 1.37e-48 | 156 |
| Msa0182410 | MtrunA17_Chr2g0318011 | 48.503 | 167 | 86 | 0 | 4 | 170 | 3 | 169 | 1.54e-46 | 151 |
| Msa0182410 | MtrunA17_Chr5g0423771 | 41.379 | 174 | 102 | 0 | 4 | 177 | 7 | 180 | 4.86e-45 | 147 |
| Msa0182410 | MtrunA17_Chr4g0047771 | 43.787 | 169 | 93 | 2 | 1 | 169 | 1 | 167 | 3.62e-42 | 140 |
| Msa0182410 | MtrunA17_Chr1g0209301 | 67.416 | 89 | 28 | 1 | 102 | 189 | 17 | 105 | 1.72e-35 | 120 |
| Msa0182410 | MtrunA17_Chr1g0209311 | 55.000 | 100 | 43 | 1 | 1 | 100 | 1 | 98 | 3.33e-33 | 114 |
| Msa0182410 | MtrunA17_Chr1g0209291 | 52.000 | 100 | 46 | 1 | 1 | 100 | 1 | 98 | 5.64e-27 | 98.6 |
| Msa0182410 | MtrunA17_Chr4g0039411 | 30.978 | 184 | 117 | 6 | 1 | 178 | 1 | 180 | 1.14e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182410 | AT1G68220.1 | 62.564 | 195 | 70 | 2 | 1 | 192 | 1 | 195 | 1.91e-85 | 251 |
| Msa0182410 | AT1G52910.1 | 46.286 | 175 | 92 | 2 | 1 | 174 | 1 | 174 | 3.00e-49 | 158 |
| Msa0182410 | AT3G15480.1 | 47.753 | 178 | 87 | 3 | 1 | 177 | 1 | 173 | 1.32e-48 | 156 |
| Msa0182410 | AT4G27435.1 | 49.045 | 157 | 80 | 0 | 10 | 166 | 9 | 165 | 3.08e-47 | 153 |
| Msa0182410 | AT1G13380.1 | 45.399 | 163 | 86 | 1 | 4 | 166 | 7 | 166 | 8.83e-42 | 139 |
| Msa0182410 | AT1G61065.1 | 41.916 | 167 | 94 | 2 | 17 | 183 | 16 | 179 | 6.14e-39 | 132 |
| Msa0182410 | AT5G17210.1 | 32.215 | 149 | 97 | 3 | 14 | 160 | 15 | 161 | 8.20e-13 | 64.7 |
Find 77 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGCTGACACTGGTTTC+TGG | 0.168217 | 1_4:-70892248 | Msa0182410:CDS |
| TGTAAAGTGACCATTCTTTC+TGG | 0.168738 | 1_4:+70891790 | None:intergenic |
| TTTAATATTTATGCCGTAAT+TGG | 0.187655 | 1_4:-70892029 | Msa0182410:three_prime_UTR |
| AAATTCAAATTTCAAGATAT+TGG | 0.187944 | 1_4:+70891633 | None:intergenic |
| CCAATCCAATGCCTTCATTT+TGG | 0.194665 | 1_4:+70892217 | None:intergenic |
| TTACCAAAATGAAGGTGTTT+TGG | 0.247519 | 1_4:-70892100 | Msa0182410:three_prime_UTR |
| CGCAAAGGTGTGTTTGCTGC+TGG | 0.268553 | 1_4:-70892327 | Msa0182410:CDS |
| CTTCAGGGCTTATCAGATTC+AGG | 0.297517 | 1_4:+70892177 | None:intergenic |
| AAGTGGAAAACTTGACTAAA+AGG | 0.331366 | 1_4:+70891814 | None:intergenic |
| TTTCAAGCATTCACCAATTA+CGG | 0.344003 | 1_4:+70892016 | None:intergenic |
| CAATAGCAACACTTTCAAAC+TGG | 0.362205 | 1_4:+70891936 | None:intergenic |
| GTTGAAAGCAGTAAACCTTC+AGG | 0.380221 | 1_4:+70892161 | None:intergenic |
| CTTGACCTTGTTCTCTATGT+TGG | 0.382330 | 1_4:-70892298 | Msa0182410:CDS |
| TACAGACACAGCCATGATTT+CGG | 0.392499 | 1_4:+70893921 | None:intergenic |
| GCAGAGGCGTGCTTGTTAGC+AGG | 0.394015 | 1_4:-70892423 | Msa0182410:CDS |
| AACAAACAATACAGAGTAAA+GGG | 0.402361 | 1_4:-70893976 | Msa0182410:five_prime_UTR |
| GCAAAGGTGTGTTTGCTGCT+GGG | 0.415418 | 1_4:-70892326 | Msa0182410:CDS |
| CAAGGCTGACACTGGTTTCT+GGG | 0.415808 | 1_4:-70892247 | Msa0182410:CDS |
| TGACCATTCTTTCTGGAAAG+TGG | 0.424788 | 1_4:+70891797 | None:intergenic |
| TTTCCACTTTCCAGAAAGAA+TGG | 0.426874 | 1_4:-70891800 | Msa0182410:three_prime_UTR |
| AATATCTTCAATTCAATGTC+TGG | 0.429834 | 1_4:+70894026 | None:intergenic |
| GAACAGTTTGACTGAGAAGC+AGG | 0.443123 | 1_4:+70893652 | None:intergenic |
| ACAATATATAGATAAATAGA+TGG | 0.446395 | 1_4:-70891994 | Msa0182410:three_prime_UTR |
| GTTTACTGCTTTCAACATGC+TGG | 0.447801 | 1_4:-70892154 | Msa0182410:three_prime_UTR |
| CAAATTGAACACCGAAATCA+TGG | 0.450311 | 1_4:-70893932 | Msa0182410:exon |
| CAAAGGTGTGTTTGCTGCTG+GGG | 0.452357 | 1_4:-70892325 | Msa0182410:CDS |
| AATAGATGGTAGTGGTATGG+TGG | 0.454376 | 1_4:-70891980 | Msa0182410:three_prime_UTR |
| ATTAGATGCACTAAAGCAAA+TGG | 0.470320 | 1_4:+70891893 | None:intergenic |
| CAATGTGTTCAAAACCTTGT+TGG | 0.472667 | 1_4:-70892061 | Msa0182410:three_prime_UTR |
| AGTGTTGCTATTGAAACAAA+TGG | 0.479016 | 1_4:-70891926 | Msa0182410:three_prime_UTR |
| TCATCTTCTTCATTCTCTCA+TGG | 0.481945 | 1_4:-70893560 | Msa0182410:intron |
| AGAGATGAAGAGAAATGATA+AGG | 0.482501 | 1_4:+70893887 | None:intergenic |
| GTTCGGTCATCGTACTCATC+AGG | 0.486965 | 1_4:+70893732 | None:intergenic |
| AGATGTCTTTGCTGTGGTAA+AGG | 0.489539 | 1_4:-70893615 | Msa0182410:CDS |
| AAACAAACAATACAGAGTAA+AGG | 0.496962 | 1_4:-70893977 | Msa0182410:five_prime_UTR |
| TGTGGTAAAGGTCTCATCTC+TGG | 0.498793 | 1_4:-70893603 | Msa0182410:CDS |
| TTGAAAGCAGTAAACCTTCA+GGG | 0.502427 | 1_4:+70892162 | None:intergenic |
| ATAGATGGTAGTGGTATGGT+GGG | 0.504617 | 1_4:-70891979 | Msa0182410:three_prime_UTR |
| GCTTGTTAGCAGGCTCTGCT+AGG | 0.513926 | 1_4:-70892413 | Msa0182410:CDS |
| AAGCACCAAAATGAAGGCAT+TGG | 0.516097 | 1_4:-70892222 | Msa0182410:CDS |
| TTTACTGCTTTCAACATGCT+GGG | 0.519387 | 1_4:-70892153 | Msa0182410:three_prime_UTR |
| TGGTGTAAACACAGAAAGTT+CGG | 0.520390 | 1_4:+70893715 | None:intergenic |
| ATAAATAGATGGTAGTGGTA+TGG | 0.540818 | 1_4:-70891983 | Msa0182410:three_prime_UTR |
| TGGGAGAAGCACCAAAATGA+AGG | 0.543939 | 1_4:-70892228 | Msa0182410:CDS |
| CCAAAATGAAGGCATTGGAT+TGG | 0.547050 | 1_4:-70892217 | Msa0182410:CDS |
| CCCTCGGTACTTTGTGTGGT+AGG | 0.550996 | 1_4:+70892386 | None:intergenic |
| CCAGAAACCAGTGTCAGCCT+TGG | 0.551041 | 1_4:+70892248 | None:intergenic |
| GATGCACTAAAGCAAATGGT+TGG | 0.551676 | 1_4:+70891897 | None:intergenic |
| AATTCCCTCGGTACTTTGTG+TGG | 0.559584 | 1_4:+70892382 | None:intergenic |
| TATAGATAAATAGATGGTAG+TGG | 0.562653 | 1_4:-70891988 | Msa0182410:three_prime_UTR |
| GCACACGCCAAGGCTGACAC+TGG | 0.573418 | 1_4:-70892255 | Msa0182410:CDS |
| AGATGGTAGTGGTATGGTGG+GGG | 0.575873 | 1_4:-70891977 | Msa0182410:three_prime_UTR |
| ACCGACGCTTCCACTGTCTA+CGG | 0.578522 | 1_4:-70893693 | Msa0182410:CDS |
| CTGAATCTGATAAGCCCTGA+AGG | 0.582169 | 1_4:-70892176 | Msa0182410:exon |
| GTACTATTGGGCACACGCCA+AGG | 0.584073 | 1_4:-70892265 | Msa0182410:CDS |
| CGCTGAACGACGTCGTAGTG+AGG | 0.588172 | 1_4:-70893842 | Msa0182410:intron |
| GAAGAAGATGACAGCACAAG+TGG | 0.589788 | 1_4:+70893572 | None:intergenic |
| TCGTTCATTATCTTGTTGTG+TGG | 0.591988 | 1_4:-70891691 | Msa0182410:three_prime_UTR |
| AGCAGCAACACCGTAGACAG+TGG | 0.594874 | 1_4:+70893683 | None:intergenic |
| GTACTCATCAGGAACCACTT+TGG | 0.600621 | 1_4:+70893743 | None:intergenic |
| ACCGTAGACAGTGGAAGCGT+CGG | 0.606731 | 1_4:+70893692 | None:intergenic |
| AGAAGCCAACATAGAGAACA+AGG | 0.611678 | 1_4:+70892293 | None:intergenic |
| GTCACTAGATGTCTTTGCTG+TGG | 0.617569 | 1_4:-70893621 | Msa0182410:CDS |
| TAGATGGTAGTGGTATGGTG+GGG | 0.627375 | 1_4:-70891978 | Msa0182410:three_prime_UTR |
| GTAGACAGTGGAAGCGTCGG+TGG | 0.627400 | 1_4:+70893695 | None:intergenic |
| CGTGTGTCACAAAATTCCCT+CGG | 0.630799 | 1_4:+70892370 | None:intergenic |
| CAACATAGAGAACAAGGTCA+AGG | 0.636116 | 1_4:+70892299 | None:intergenic |
| TCTTGCGCTACACTTCGCAA+AGG | 0.645552 | 1_4:-70892342 | Msa0182410:CDS |
| GGATTGGCCACACACAATCA+CGG | 0.646265 | 1_4:-70892201 | Msa0182410:CDS |
| TTCAGGACCGTGATTGTGTG+TGG | 0.660100 | 1_4:+70892194 | None:intergenic |
| GCCTACCACACAAAGTACCG+AGG | 0.682833 | 1_4:-70892387 | Msa0182410:CDS |
| CCTACCACACAAAGTACCGA+GGG | 0.685131 | 1_4:-70892386 | Msa0182410:CDS |
| ACAGCAAAGACATCTAGTGA+CGG | 0.697347 | 1_4:+70893623 | None:intergenic |
| CACAACAAGATAATGAACGA+GGG | 0.700896 | 1_4:+70891694 | None:intergenic |
| TTAAATATACTCTACCAACA+AGG | 0.709057 | 1_4:+70892047 | None:intergenic |
| ACACAACAAGATAATGAACG+AGG | 0.713523 | 1_4:+70891693 | None:intergenic |
| AACAAGATAATGAACGAGGG+CGG | 0.719134 | 1_4:+70891697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAGGGTTTTTTAA+GGG | + | chr1_4:70892194-70892213 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGGGTTTTTTA+AGG | + | chr1_4:70892195-70892214 | None:intergenic | 15.0% |
| !! | AAAATTAATTGTGTTGAATT+TGG | - | chr1_4:70892315-70892334 | Msa0182410:CDS | 15.0% |
| !! | TTGGTTATTTGATAAAAATT+TGG | - | chr1_4:70892334-70892353 | Msa0182410:CDS | 15.0% |
| !! | AAGCAAAAAATAAATATGAT+GGG | + | chr1_4:70892948-70892967 | None:intergenic | 15.0% |
| !! | AAAGCAAAAAATAAATATGA+TGG | + | chr1_4:70892949-70892968 | None:intergenic | 15.0% |
| !! | ACAATATATAGATAAATAGA+TGG | - | chr1_4:70893702-70893721 | Msa0182410:CDS | 15.0% |
| !!! | TTACCAAATTTTTTTTATCA+CGG | + | chr1_4:70893839-70893858 | None:intergenic | 15.0% |
| !! | AAATTCAAATTTCAAGATAT+TGG | + | chr1_4:70894066-70894085 | None:intergenic | 15.0% |
| !!! | TTAGTGTTGAAATTAAAGAA+AGG | + | chr1_4:70891890-70891909 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGGGTTTTTTAAG+GGG | + | chr1_4:70892193-70892212 | None:intergenic | 20.0% |
| !! | CTAAGTAATAATACAAAAGA+AGG | + | chr1_4:70893009-70893028 | None:intergenic | 20.0% |
| !! | CTTATACATATAAACACAAA+AGG | + | chr1_4:70893081-70893100 | None:intergenic | 20.0% |
| !! | TTTAATATTTATGCCGTAAT+TGG | - | chr1_4:70893667-70893686 | Msa0182410:CDS | 20.0% |
| !! | TTACCGTGATAAAAAAAATT+TGG | - | chr1_4:70893833-70893852 | Msa0182410:intron | 20.0% |
| ! | AATATCTTCAATTCAATGTC+TGG | + | chr1_4:70891673-70891692 | None:intergenic | 25.0% |
| ! | AAACAAACAATACAGAGTAA+AGG | - | chr1_4:70891719-70891738 | Msa0182410:three_prime_UTR | 25.0% |
| ! | AACAAACAATACAGAGTAAA+GGG | - | chr1_4:70891720-70891739 | Msa0182410:three_prime_UTR | 25.0% |
| !! | AATCTGATTAATCTCTTTTC+AGG | - | chr1_4:70891930-70891949 | Msa0182410:three_prime_UTR | 25.0% |
| ! | AAATAAAAAGCTGTGAAGAT+TGG | + | chr1_4:70892169-70892188 | None:intergenic | 25.0% |
| ! | TCATGGTCTCAAATTATTAA+TGG | + | chr1_4:70892680-70892699 | None:intergenic | 25.0% |
| ! | TCTCATAATGTTACAAAAAG+AGG | + | chr1_4:70892844-70892863 | None:intergenic | 25.0% |
| ! | TTTCACTAATTAGTAGAACT+AGG | - | chr1_4:70892881-70892900 | Msa0182410:intron | 25.0% |
| ! | TTCACTAATTAGTAGAACTA+GGG | - | chr1_4:70892882-70892901 | Msa0182410:intron | 25.0% |
| !!! | TAGACTTCTATATGTTTTTG+AGG | - | chr1_4:70892968-70892987 | Msa0182410:intron | 25.0% |
| ! | TTAGTTTACTAGTGATTTAG+TGG | - | chr1_4:70893025-70893044 | Msa0182410:intron | 25.0% |
| ! | AATCATCATTATTTCACTTC+AGG | + | chr1_4:70893212-70893231 | None:intergenic | 25.0% |
| ! | ATTATTGTTGCTGTAAAATC+AGG | - | chr1_4:70893235-70893254 | Msa0182410:intron | 25.0% |
| !!! | ATTGCTTTTTACCAAAATGA+AGG | - | chr1_4:70893588-70893607 | Msa0182410:CDS | 25.0% |
| ! | TTAAATATACTCTACCAACA+AGG | + | chr1_4:70893652-70893671 | None:intergenic | 25.0% |
| ! | TATAGATAAATAGATGGTAG+TGG | - | chr1_4:70893708-70893727 | Msa0182410:CDS | 25.0% |
| AGAGATGAAGAGAAATGATA+AGG | + | chr1_4:70891812-70891831 | None:intergenic | 30.0% | |
| !! | TTAGCTTTCGTTTTTGCTAT+AGG | - | chr1_4:70891831-70891850 | Msa0182410:three_prime_UTR | 30.0% |
| GAAGTCTTTGTACATGAATT+CGG | - | chr1_4:70892407-70892426 | Msa0182410:CDS | 30.0% | |
| ATGCTGAGCTTGAAAAAATA+TGG | + | chr1_4:70892512-70892531 | None:intergenic | 30.0% | |
| AATTATTAATGGTGTCTACG+TGG | + | chr1_4:70892669-70892688 | None:intergenic | 30.0% | |
| TGGTCATGTGAAAGAAAATA+GGG | + | chr1_4:70892815-70892834 | None:intergenic | 30.0% | |
| ATGGTCATGTGAAAGAAAAT+AGG | + | chr1_4:70892816-70892835 | None:intergenic | 30.0% | |
| GTTACAAAAAGAGGAAGTAA+TGG | + | chr1_4:70892835-70892854 | None:intergenic | 30.0% | |
| TAATTAGTGAAAGATCCTGA+GGG | + | chr1_4:70892873-70892892 | None:intergenic | 30.0% | |
| !! | CTATATGTTTTTGAGGATGA+AGG | - | chr1_4:70892975-70892994 | Msa0182410:intron | 30.0% |
| TCGAGATTCTATGTAAGATT+GGG | + | chr1_4:70893174-70893193 | None:intergenic | 30.0% | |
| ! | TGGCTTCTATTTTGTACTAT+TGG | - | chr1_4:70893418-70893437 | Msa0182410:intron | 30.0% |
| ! | GGCTTCTATTTTGTACTATT+GGG | - | chr1_4:70893419-70893438 | Msa0182410:intron | 30.0% |
| !!! | TTACCAAAATGAAGGTGTTT+TGG | - | chr1_4:70893596-70893615 | Msa0182410:CDS | 30.0% |
| !!! | TACCAAAATGAAGGTGTTTT+GGG | - | chr1_4:70893597-70893616 | Msa0182410:CDS | 30.0% |
| TTTCAAGCATTCACCAATTA+CGG | + | chr1_4:70893683-70893702 | None:intergenic | 30.0% | |
| !! | ATAAATAGATGGTAGTGGTA+TGG | - | chr1_4:70893713-70893732 | Msa0182410:CDS | 30.0% |
| ! | AGTGTTGCTATTGAAACAAA+TGG | - | chr1_4:70893770-70893789 | Msa0182410:intron | 30.0% |
| ATTAGATGCACTAAAGCAAA+TGG | + | chr1_4:70893806-70893825 | None:intergenic | 30.0% | |
| AAGTGGAAAACTTGACTAAA+AGG | + | chr1_4:70893885-70893904 | None:intergenic | 30.0% | |
| CAAATTGAACACCGAAATCA+TGG | - | chr1_4:70891764-70891783 | Msa0182410:three_prime_UTR | 35.0% | |
| TGGTGTAAACACAGAAAGTT+CGG | + | chr1_4:70891984-70892003 | None:intergenic | 35.0% | |
| TCATCTTCTTCATTCTCTCA+TGG | - | chr1_4:70892136-70892155 | Msa0182410:three_prime_UTR | 35.0% | |
| ! | CGTAAGTGTTGTATATGTGT+TGG | - | chr1_4:70892711-70892730 | Msa0182410:intron | 35.0% |
| ATGTGAAAGAAAATAGGGGA+AGG | + | chr1_4:70892810-70892829 | None:intergenic | 35.0% | |
| GGTCATGTGAAAGAAAATAG+GGG | + | chr1_4:70892814-70892833 | None:intergenic | 35.0% | |
| AATTAGTGAAAGATCCTGAG+GGG | + | chr1_4:70892872-70892891 | None:intergenic | 35.0% | |
| CTAATTAGTGAAAGATCCTG+AGG | + | chr1_4:70892874-70892893 | None:intergenic | 35.0% | |
| ! | TAGTAGAACTAGGGTTTTTC+CGG | - | chr1_4:70892891-70892910 | Msa0182410:intron | 35.0% |
| AACTGTAAGATCCTACAGAA+GGG | + | chr1_4:70893114-70893133 | None:intergenic | 35.0% | |
| ATTCTATGTAAGATTGGGAG+GGG | + | chr1_4:70893169-70893188 | None:intergenic | 35.0% | |
| GATTCTATGTAAGATTGGGA+GGG | + | chr1_4:70893170-70893189 | None:intergenic | 35.0% | |
| AGATTCTATGTAAGATTGGG+AGG | + | chr1_4:70893171-70893190 | None:intergenic | 35.0% | |
| CTCGAGATTCTATGTAAGAT+TGG | + | chr1_4:70893175-70893194 | None:intergenic | 35.0% | |
| !!! | TAAAATCAGGACCGGTTTTT+TGG | - | chr1_4:70893248-70893267 | Msa0182410:intron | 35.0% |
| TTGAAAGCAGTAAACCTTCA+GGG | + | chr1_4:70893537-70893556 | None:intergenic | 35.0% | |
| TTTACTGCTTTCAACATGCT+GGG | - | chr1_4:70893543-70893562 | Msa0182410:intron | 35.0% | |
| !!! | ACCAAAATGAAGGTGTTTTG+GGG | - | chr1_4:70893598-70893617 | Msa0182410:CDS | 35.0% |
| CAATGTGTTCAAAACCTTGT+TGG | - | chr1_4:70893635-70893654 | Msa0182410:CDS | 35.0% | |
| CAATAGCAACACTTTCAAAC+TGG | + | chr1_4:70893763-70893782 | None:intergenic | 35.0% | |
| TTTCCACTTTCCAGAAAGAA+TGG | - | chr1_4:70893896-70893915 | Msa0182410:CDS | 35.0% | |
| TGTAAAGTGACCATTCTTTC+TGG | + | chr1_4:70893909-70893928 | None:intergenic | 35.0% | |
| CCAAAAAAAGATTTGGGAGA+AGG | + | chr1_4:70893977-70893996 | None:intergenic | 35.0% | |
| !!! | CCTTCTCCCAAATCTTTTTT+TGG | - | chr1_4:70893974-70893993 | Msa0182410:five_prime_UTR | 35.0% |
| GCGGTTCCAAAAAAAGATTT+GGG | + | chr1_4:70893983-70894002 | None:intergenic | 35.0% | |
| CACAACAAGATAATGAACGA+GGG | + | chr1_4:70894005-70894024 | None:intergenic | 35.0% | |
| ACACAACAAGATAATGAACG+AGG | + | chr1_4:70894006-70894025 | None:intergenic | 35.0% | |
| ! | TCGTTCATTATCTTGTTGTG+TGG | - | chr1_4:70894005-70894024 | Msa0182410:five_prime_UTR | 35.0% |
| TACAGACACAGCCATGATTT+CGG | + | chr1_4:70891778-70891797 | None:intergenic | 40.0% | |
| !! | AATCTCTTTTCAGGCCAAAG+TGG | - | chr1_4:70891939-70891958 | Msa0182410:three_prime_UTR | 40.0% |
| ACAGCAAAGACATCTAGTGA+CGG | + | chr1_4:70892076-70892095 | None:intergenic | 40.0% | |
| ! | AGATGTCTTTGCTGTGGTAA+AGG | - | chr1_4:70892081-70892100 | Msa0182410:three_prime_UTR | 40.0% |
| AACATCCAATGACATGTCGA+CGG | + | chr1_4:70892471-70892490 | None:intergenic | 40.0% | |
| CATTTACGTAGTTGGGACAT+TGG | + | chr1_4:70892607-70892626 | None:intergenic | 40.0% | |
| TGAATGGGAAAAGAGAGCTT+GGG | - | chr1_4:70892914-70892933 | Msa0182410:intron | 40.0% | |
| !! | AATAAATATGATGGGCCTCG+TGG | + | chr1_4:70892940-70892959 | None:intergenic | 40.0% |
| CAACTGTAAGATCCTACAGA+AGG | + | chr1_4:70893115-70893134 | None:intergenic | 40.0% | |
| GGTTGAAAGATCATAAGTCG+AGG | + | chr1_4:70893147-70893166 | None:intergenic | 40.0% | |
| TTCTATGTAAGATTGGGAGG+GGG | + | chr1_4:70893168-70893187 | None:intergenic | 40.0% | |
| TGTTGCTGTAAAATCAGGAC+CGG | - | chr1_4:70893240-70893259 | Msa0182410:intron | 40.0% | |
| CAACATAGAGAACAAGGTCA+AGG | + | chr1_4:70893400-70893419 | None:intergenic | 40.0% | |
| CTTGACCTTGTTCTCTATGT+TGG | - | chr1_4:70893398-70893417 | Msa0182410:intron | 40.0% | |
| AGAAGCCAACATAGAGAACA+AGG | + | chr1_4:70893406-70893425 | None:intergenic | 40.0% | |
| ! | AAGCACCAAAATGAAGGCAT+TGG | - | chr1_4:70893474-70893493 | Msa0182410:intron | 40.0% |
| ! | CCAATCCAATGCCTTCATTT+TGG | + | chr1_4:70893482-70893501 | None:intergenic | 40.0% |
| !! | CCAAAATGAAGGCATTGGAT+TGG | - | chr1_4:70893479-70893498 | Msa0182410:intron | 40.0% |
| GTTGAAAGCAGTAAACCTTC+AGG | + | chr1_4:70893538-70893557 | None:intergenic | 40.0% | |
| GTTTACTGCTTTCAACATGC+TGG | - | chr1_4:70893542-70893561 | Msa0182410:intron | 40.0% | |
| !!! | CCAAAATGAAGGTGTTTTGG+GGG | - | chr1_4:70893599-70893618 | Msa0182410:CDS | 40.0% |
| !! | AATAGATGGTAGTGGTATGG+TGG | - | chr1_4:70893716-70893735 | Msa0182410:CDS | 40.0% |
| !! | ATAGATGGTAGTGGTATGGT+GGG | - | chr1_4:70893717-70893736 | Msa0182410:CDS | 40.0% |
| GATGCACTAAAGCAAATGGT+TGG | + | chr1_4:70893802-70893821 | None:intergenic | 40.0% | |
| ! | TGACCATTCTTTCTGGAAAG+TGG | + | chr1_4:70893902-70893921 | None:intergenic | 40.0% |
| GGCGGTTCCAAAAAAAGATT+TGG | + | chr1_4:70893984-70894003 | None:intergenic | 40.0% | |
| AACAAGATAATGAACGAGGG+CGG | + | chr1_4:70894002-70894021 | None:intergenic | 40.0% | |
| GTACTCATCAGGAACCACTT+TGG | + | chr1_4:70891956-70891975 | None:intergenic | 45.0% | |
| GAACAGTTTGACTGAGAAGC+AGG | + | chr1_4:70892047-70892066 | None:intergenic | 45.0% | |
| GTCACTAGATGTCTTTGCTG+TGG | - | chr1_4:70892075-70892094 | Msa0182410:three_prime_UTR | 45.0% | |
| TGTGGTAAAGGTCTCATCTC+TGG | - | chr1_4:70892093-70892112 | Msa0182410:three_prime_UTR | 45.0% | |
| GAAGAAGATGACAGCACAAG+TGG | + | chr1_4:70892127-70892146 | None:intergenic | 45.0% | |
| ACATCCAATGACATGTCGAC+GGG | + | chr1_4:70892470-70892489 | None:intergenic | 45.0% | |
| TTACGTAGTTGGGACATTGG+TGG | + | chr1_4:70892604-70892623 | None:intergenic | 45.0% | |
| TGTCCCAACTACGTAAATGC+AGG | - | chr1_4:70892608-70892627 | Msa0182410:intron | 45.0% | |
| GTCCCAACTACGTAAATGCA+GGG | - | chr1_4:70892609-70892628 | Msa0182410:intron | 45.0% | |
| TCCCAACTACGTAAATGCAG+GGG | - | chr1_4:70892610-70892629 | Msa0182410:intron | 45.0% | |
| TCCCCTGCATTTACGTAGTT+GGG | + | chr1_4:70892614-70892633 | None:intergenic | 45.0% | |
| ATCCCCTGCATTTACGTAGT+TGG | + | chr1_4:70892615-70892634 | None:intergenic | 45.0% | |
| GATTACGTGCAACCGAAATC+GGG | + | chr1_4:70892647-70892666 | None:intergenic | 45.0% | |
| GGATTACGTGCAACCGAAAT+CGG | + | chr1_4:70892648-70892667 | None:intergenic | 45.0% | |
| CTTACGCTCTCTCACTTTCA+TGG | + | chr1_4:70892697-70892716 | None:intergenic | 45.0% | |
| AGAAGGAGAGCAGATTGCAA+GGG | + | chr1_4:70892781-70892800 | None:intergenic | 45.0% | |
| AAGAAGGAGAGCAGATTGCA+AGG | + | chr1_4:70892782-70892801 | None:intergenic | 45.0% | |
| ATTATGAGAGTTGACCCCTC+AGG | - | chr1_4:70892855-70892874 | Msa0182410:intron | 45.0% | |
| ! | ACTAGGGTTTTTCCGGTGAA+TGG | - | chr1_4:70892898-70892917 | Msa0182410:intron | 45.0% |
| ! | CTAGGGTTTTTCCGGTGAAT+GGG | - | chr1_4:70892899-70892918 | Msa0182410:intron | 45.0% |
| ! | AGCTCTCTTTTCCCATTCAC+CGG | + | chr1_4:70892913-70892932 | None:intergenic | 45.0% |
| GTGAATGGGAAAAGAGAGCT+TGG | - | chr1_4:70892913-70892932 | Msa0182410:intron | 45.0% | |
| ! | GCACAATTTTGCCCTTCTGT+AGG | - | chr1_4:70893100-70893119 | Msa0182410:intron | 45.0% |
| AATTCCCTCGGTACTTTGTG+TGG | + | chr1_4:70893317-70893336 | None:intergenic | 45.0% | |
| CGTGTGTCACAAAATTCCCT+CGG | + | chr1_4:70893329-70893348 | None:intergenic | 45.0% | |
| !! | TGGGAGAAGCACCAAAATGA+AGG | - | chr1_4:70893468-70893487 | Msa0182410:intron | 45.0% |
| CTTCAGGGCTTATCAGATTC+AGG | + | chr1_4:70893522-70893541 | None:intergenic | 45.0% | |
| CTGAATCTGATAAGCCCTGA+AGG | - | chr1_4:70893520-70893539 | Msa0182410:intron | 45.0% | |
| ! | CCCCCAAAACACCTTCATTT+TGG | + | chr1_4:70893602-70893621 | None:intergenic | 45.0% |
| !! | TAGATGGTAGTGGTATGGTG+GGG | - | chr1_4:70893718-70893737 | Msa0182410:CDS | 45.0% |
| !! | TACAAAAAAAAAAAAAAAAA+GGG | + | chr1_4:70892205-70892224 | None:intergenic | 5.0% |
| !! | TTACAAAAAAAAAAAAAAAA+AGG | + | chr1_4:70892206-70892225 | None:intergenic | 5.0% |
| GTTCGGTCATCGTACTCATC+AGG | + | chr1_4:70891967-70891986 | None:intergenic | 50.0% | |
| CATCCAATGACATGTCGACG+GGG | + | chr1_4:70892469-70892488 | None:intergenic | 50.0% | |
| ! | GATTGCCGATTGCCCGATTT+CGG | - | chr1_4:70892632-70892651 | Msa0182410:intron | 50.0% |
| TGCAACCGAAATCGGGCAAT+CGG | + | chr1_4:70892640-70892659 | None:intergenic | 50.0% | |
| GAAGGAGAGCAGATTGCAAG+GGG | + | chr1_4:70892780-70892799 | None:intergenic | 50.0% | |
| ATAGGGGAAGGCAGAGAAGA+AGG | + | chr1_4:70892798-70892817 | None:intergenic | 50.0% | |
| !! | CCTACCACACAAAGTACCGA+GGG | - | chr1_4:70893310-70893329 | Msa0182410:intron | 50.0% |
| TCTTGCGCTACACTTCGCAA+AGG | - | chr1_4:70893354-70893373 | Msa0182410:intron | 50.0% | |
| ! | GCAAAGGTGTGTTTGCTGCT+GGG | - | chr1_4:70893370-70893389 | Msa0182410:intron | 50.0% |
| ! | CAAAGGTGTGTTTGCTGCTG+GGG | - | chr1_4:70893371-70893390 | Msa0182410:intron | 50.0% |
| !! | CAAGGCTGACACTGGTTTCT+GGG | - | chr1_4:70893449-70893468 | Msa0182410:intron | 50.0% |
| !! | GGATTGGCCACACACAATCA+CGG | - | chr1_4:70893495-70893514 | Msa0182410:intron | 50.0% |
| TTCAGGACCGTGATTGTGTG+TGG | + | chr1_4:70893505-70893524 | None:intergenic | 50.0% | |
| !!! | GAAGGTGTTTTGGGGGATGA+AGG | - | chr1_4:70893606-70893625 | Msa0182410:CDS | 50.0% |
| !!! | GTGTTTTGGGGGATGAAGGA+AGG | - | chr1_4:70893610-70893629 | Msa0182410:CDS | 50.0% |
| !! | AGATGGTAGTGGTATGGTGG+GGG | - | chr1_4:70893719-70893738 | Msa0182410:CDS | 50.0% |
| ACCGACGCTTCCACTGTCTA+CGG | - | chr1_4:70892003-70892022 | Msa0182410:three_prime_UTR | 55.0% | |
| ! | ACCGTAGACAGTGGAAGCGT+CGG | + | chr1_4:70892007-70892026 | None:intergenic | 55.0% |
| AGCAGCAACACCGTAGACAG+TGG | + | chr1_4:70892016-70892035 | None:intergenic | 55.0% | |
| TCGGATTGCTTTCCCGCAGT+TGG | - | chr1_4:70892426-70892445 | Msa0182410:CDS | 55.0% | |
| TGAGGGTCAACTGCCAACTG+CGG | + | chr1_4:70892442-70892461 | None:intergenic | 55.0% | |
| CATGTCGACGGGGTGAATGA+GGG | + | chr1_4:70892459-70892478 | None:intergenic | 55.0% | |
| ACATGTCGACGGGGTGAATG+AGG | + | chr1_4:70892460-70892479 | None:intergenic | 55.0% | |
| TCACCCCGTCGACATGTCAT+TGG | - | chr1_4:70892463-70892482 | Msa0182410:intron | 55.0% | |
| AAAAGAGAGCTTGGGCCACG+AGG | - | chr1_4:70892922-70892941 | Msa0182410:intron | 55.0% | |
| !!! | GACCGGTTTTTTGGCAGCAG+AGG | - | chr1_4:70893257-70893276 | Msa0182410:intron | 55.0% |
| CGCCTCTGCTGCCAAAAAAC+CGG | + | chr1_4:70893262-70893281 | None:intergenic | 55.0% | |
| ! | GCTTGTTAGCAGGCTCTGCT+AGG | - | chr1_4:70893283-70893302 | Msa0182410:intron | 55.0% |
| !! | GCCTACCACACAAAGTACCG+AGG | - | chr1_4:70893309-70893328 | Msa0182410:intron | 55.0% |
| CCCTCGGTACTTTGTGTGGT+AGG | + | chr1_4:70893313-70893332 | None:intergenic | 55.0% | |
| ! | CGCAAAGGTGTGTTTGCTGC+TGG | - | chr1_4:70893369-70893388 | Msa0182410:intron | 55.0% |
| GTACTATTGGGCACACGCCA+AGG | - | chr1_4:70893431-70893450 | Msa0182410:intron | 55.0% | |
| CCAGAAACCAGTGTCAGCCT+TGG | + | chr1_4:70893451-70893470 | None:intergenic | 55.0% | |
| !! | CCAAGGCTGACACTGGTTTC+TGG | - | chr1_4:70893448-70893467 | Msa0182410:intron | 55.0% |
| CGCTGAACGACGTCGTAGTG+AGG | - | chr1_4:70891854-70891873 | Msa0182410:three_prime_UTR | 60.0% | |
| !! | GTAGACAGTGGAAGCGTCGG+TGG | + | chr1_4:70892004-70892023 | None:intergenic | 60.0% |
| GAGGGTCAACTGCCAACTGC+GGG | + | chr1_4:70892441-70892460 | None:intergenic | 60.0% | |
| GGAGAGCAGATTGCAAGGGG+CGG | + | chr1_4:70892777-70892796 | None:intergenic | 60.0% | |
| ! | GCAGAGGCGTGCTTGTTAGC+AGG | - | chr1_4:70893273-70893292 | Msa0182410:intron | 60.0% |
| GCACACGCCAAGGCTGACAC+TGG | - | chr1_4:70893441-70893460 | Msa0182410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 70891630 | 70894088 | 70891630 | ID=Msa0182410;Name=Msa0182410 |
| chr1_4 | mRNA | 70891630 | 70894088 | 70891630 | ID=Msa0182410-mRNA-1;Parent=Msa0182410;Name=Msa0182410-mRNA-1;_AED=0.16;_eAED=0.16;_QI=153|1|1|1|1|1|3|549|193 |
| chr1_4 | exon | 70891630 | 70892461 | 70891630 | ID=Msa0182410-mRNA-1:exon:23799;Parent=Msa0182410-mRNA-1 |
| chr1_4 | exon | 70893561 | 70893766 | 70893561 | ID=Msa0182410-mRNA-1:exon:23798;Parent=Msa0182410-mRNA-1 |
| chr1_4 | exon | 70893843 | 70894088 | 70893843 | ID=Msa0182410-mRNA-1:exon:23797;Parent=Msa0182410-mRNA-1 |
| chr1_4 | five_prime_UTR | 70893936 | 70894088 | 70893936 | ID=Msa0182410-mRNA-1:five_prime_utr;Parent=Msa0182410-mRNA-1 |
| chr1_4 | CDS | 70893843 | 70893935 | 70893843 | ID=Msa0182410-mRNA-1:cds;Parent=Msa0182410-mRNA-1 |
| chr1_4 | CDS | 70893561 | 70893766 | 70893561 | ID=Msa0182410-mRNA-1:cds;Parent=Msa0182410-mRNA-1 |
| chr1_4 | CDS | 70892179 | 70892461 | 70892179 | ID=Msa0182410-mRNA-1:cds;Parent=Msa0182410-mRNA-1 |
| chr1_4 | three_prime_UTR | 70891630 | 70892178 | 70891630 | ID=Msa0182410-mRNA-1:three_prime_utr;Parent=Msa0182410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
