Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118820 | XP_024632996.1 | 96.178 | 314 | 12 | 0 | 8 | 321 | 39 | 352 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118820 | sp|Q84WU2|UBP13_ARATH | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.29e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118820 | A0A396JXC2 | 96.178 | 314 | 12 | 0 | 8 | 321 | 39 | 352 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023060 | Msa0118820 | 0.801479 | 8.831473e-49 | -8.615850e-47 |
| Msa0035020 | Msa0118820 | 0.812371 | 4.384035e-51 | -8.615850e-47 |
| Msa0070930 | Msa0118820 | 0.935811 | 4.706123e-97 | -8.615850e-47 |
| Msa0118820 | Msa0137800 | 0.806038 | 9.988725e-50 | -8.615850e-47 |
| Msa0118820 | Msa0574600 | 0.802594 | 5.209730e-49 | -8.615850e-47 |
| Msa0118820 | Msa0635270 | 0.803697 | 3.080343e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118820 | MtrunA17_Chr1g0176331 | 96.178 | 314 | 12 | 0 | 8 | 321 | 39 | 352 | 0.0 | 630 |
| Msa0118820 | MtrunA17_Chr7g0268251 | 32.164 | 342 | 196 | 7 | 8 | 320 | 43 | 377 | 9.86e-54 | 180 |
| Msa0118820 | MtrunA17_Chr1g0166871 | 31.690 | 284 | 146 | 8 | 35 | 317 | 72 | 308 | 3.20e-38 | 137 |
| Msa0118820 | MtrunA17_Chr8g0338771 | 32.423 | 293 | 147 | 9 | 36 | 293 | 75 | 351 | 1.06e-36 | 135 |
| Msa0118820 | MtrunA17_Chr7g0268221 | 42.657 | 143 | 79 | 2 | 175 | 317 | 9 | 148 | 4.22e-33 | 119 |
| Msa0118820 | MtrunA17_Chr7g0268231 | 43.511 | 131 | 71 | 2 | 189 | 319 | 7 | 134 | 4.33e-27 | 103 |
| Msa0118820 | MtrunA17_Chr2g0294801 | 31.319 | 182 | 115 | 3 | 123 | 304 | 84 | 255 | 6.51e-24 | 98.6 |
| Msa0118820 | MtrunA17_Chr3g0119031 | 41.237 | 97 | 55 | 2 | 8 | 102 | 85 | 181 | 1.02e-15 | 78.2 |
| Msa0118820 | MtrunA17_Chr5g0439971 | 40.206 | 97 | 56 | 2 | 8 | 102 | 90 | 186 | 2.31e-15 | 77.0 |
| Msa0118820 | MtrunA17_Chr7g0268201 | 39.362 | 94 | 56 | 1 | 226 | 319 | 9 | 101 | 9.79e-15 | 69.3 |
| Msa0118820 | MtrunA17_Chr1g0170261 | 38.144 | 97 | 58 | 2 | 8 | 102 | 87 | 183 | 2.52e-14 | 73.9 |
| Msa0118820 | MtrunA17_Chr5g0443161 | 34.021 | 97 | 61 | 3 | 8 | 101 | 62 | 158 | 4.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118820 | AT3G11910.4 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.31e-16 | 81.3 |
| Msa0118820 | AT3G11910.2 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.31e-16 | 81.3 |
| Msa0118820 | AT3G11910.3 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.31e-16 | 81.3 |
| Msa0118820 | AT3G11910.1 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.31e-16 | 81.3 |
| Msa0118820 | AT5G06600.3 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.33e-16 | 80.1 |
| Msa0118820 | AT5G06600.2 | 40.206 | 97 | 56 | 2 | 8 | 102 | 84 | 180 | 3.35e-16 | 80.1 |
| Msa0118820 | AT5G06600.1 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.38e-16 | 80.1 |
Find 58 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAATTTATTGAAATTT+AGG | 0.097481 | 1_3:-42019692 | None:intergenic |
| TTTAGGTGTGAAACCTTATT+TGG | 0.176545 | 1_3:+42020223 | Msa0118820:CDS |
| TAGCATTAACATTCATTTCT+TGG | 0.196289 | 1_3:-42020388 | None:intergenic |
| TCACAAGATACCCTTGTTTA+TGG | 0.211988 | 1_3:-42019716 | None:intergenic |
| TTGCTTGCTCTTTCCAAATA+AGG | 0.215332 | 1_3:-42020236 | None:intergenic |
| CCTTATGTTCAATCTGCTTT+AGG | 0.228849 | 1_3:+42020206 | Msa0118820:CDS |
| GATCTGTTAGAGATGAATTT+TGG | 0.232734 | 1_3:-42019815 | None:intergenic |
| ATTAAGACAATTTATAGATT+TGG | 0.265024 | 1_3:+42019929 | Msa0118820:CDS |
| CAATGGGCGTTTATTTCATT+AGG | 0.313100 | 1_3:+42020059 | Msa0118820:CDS |
| GATGTTGAACCTGATGTTCT+TGG | 0.313287 | 1_3:-42019867 | None:intergenic |
| AAGAACAAGAACATTGTAAA+AGG | 0.329093 | 1_3:+42019231 | Msa0118820:CDS |
| CCATTAAATACAACGTAAAA+TGG | 0.335460 | 1_3:-42019134 | None:intergenic |
| ATCCCGTTTGTTTCGACAAT+GGG | 0.347875 | 1_3:+42020043 | Msa0118820:CDS |
| GAAGAGGCTTAGAGATGAAT+TGG | 0.381597 | 1_3:+42020304 | Msa0118820:CDS |
| GCTGATTCTTTACCACCATA+TGG | 0.384239 | 1_3:+42019159 | Msa0118820:CDS |
| AAGCAAATTGAAGAAATTAC+AGG | 0.385891 | 1_3:+42020253 | Msa0118820:CDS |
| ATGAATGTTAATGCTACAAT+AGG | 0.395264 | 1_3:+42020395 | Msa0118820:CDS |
| ACAGGACAAAGTTGTTGCTT+TGG | 0.396787 | 1_3:+42020271 | Msa0118820:CDS |
| CCTTGAATCTCTCCTTCATC+TGG | 0.397555 | 1_3:-42019894 | None:intergenic |
| CGCCCATTGTCGAAACAAAC+GGG | 0.404272 | 1_3:-42020045 | None:intergenic |
| CCTAAAGCAGATTGAACATA+AGG | 0.421896 | 1_3:-42020206 | None:intergenic |
| TAAATAATCTTAAGAGTTTG+TGG | 0.433992 | 1_3:+42020138 | Msa0118820:CDS |
| TGGTCAACATCCCTCCTTAG+TGG | 0.451823 | 1_3:-42019114 | None:intergenic |
| CTTCGGAATTCGACTTGAGT+TGG | 0.454885 | 1_3:+42020177 | Msa0118820:CDS |
| AGATCAATCTTCAGATGAAA+GGG | 0.455070 | 1_3:+42019833 | Msa0118820:CDS |
| ACGCCCATTGTCGAAACAAA+CGG | 0.462214 | 1_3:-42020046 | None:intergenic |
| GTTAGTTCTCGTTAATCAGC+TGG | 0.462338 | 1_3:+42019206 | Msa0118820:CDS |
| GAGACTCAGCAAAAGTTCAA+TGG | 0.462872 | 1_3:+42019642 | Msa0118820:intron |
| ATATGTCTTCATCATGTGAT+AGG | 0.463059 | 1_3:+42019076 | None:intergenic |
| AGCTTGTCAGAAATCAGAAA+TGG | 0.467999 | 1_3:+42020362 | Msa0118820:CDS |
| ACAATTAGTCCAAGAACATC+AGG | 0.475342 | 1_3:+42019858 | Msa0118820:CDS |
| CAGATCAATCTTCAGATGAA+AGG | 0.479808 | 1_3:+42019832 | Msa0118820:CDS |
| TGCTTCACAAGCAGAGTTTG+AGG | 0.482699 | 1_3:+42020328 | Msa0118820:CDS |
| TCAATGGAGGATATAGAAGC+TGG | 0.483484 | 1_3:+42019658 | Msa0118820:CDS |
| CCAGATGAAGGAGAGATTCA+AGG | 0.494194 | 1_3:+42019894 | Msa0118820:CDS |
| AGACAATTTATAGATTTGGA+TGG | 0.504986 | 1_3:+42019933 | Msa0118820:CDS |
| ATTCTTTACCACCATATGGA+TGG | 0.506704 | 1_3:+42019163 | Msa0118820:CDS |
| GGAGGAACTAGCAAAATCTT+CGG | 0.515920 | 1_3:+42020160 | Msa0118820:CDS |
| AAATAATCTTAAGAGTTTGT+GGG | 0.516642 | 1_3:+42020139 | Msa0118820:CDS |
| TTCTTTACCACCATATGGAT+GGG | 0.526863 | 1_3:+42019164 | Msa0118820:CDS |
| GTGTTTCTATCCCATCCATA+TGG | 0.542297 | 1_3:-42019174 | None:intergenic |
| AATCCCGTTTGTTTCGACAA+TGG | 0.547890 | 1_3:+42020042 | Msa0118820:CDS |
| AAGCAGAGTTTGAGGTTGCA+AGG | 0.553922 | 1_3:+42020336 | Msa0118820:CDS |
| CTTTGGATATTAAAATGAAG+AGG | 0.557203 | 1_3:+42020288 | Msa0118820:CDS |
| ATTTGACTTTGTATCAAAGA+CGG | 0.558711 | 1_3:-42020014 | None:intergenic |
| CAATGGAGGATATAGAAGCT+GGG | 0.563913 | 1_3:+42019659 | Msa0118820:CDS |
| AGATCCTTGTGCATCCACTA+AGG | 0.569109 | 1_3:+42019100 | Msa0118820:CDS |
| AACGAGAACTAACTTGAAGA+AGG | 0.575362 | 1_3:-42019196 | None:intergenic |
| TCAACATCTAGTCCAGATGA+AGG | 0.586033 | 1_3:+42019882 | Msa0118820:CDS |
| AAATTCATTGACCATAAACA+AGG | 0.592420 | 1_3:+42019705 | Msa0118820:CDS |
| TCCTTGTGCATCCACTAAGG+AGG | 0.614099 | 1_3:+42019103 | Msa0118820:CDS |
| CCTTGTGCATCCACTAAGGA+GGG | 0.618988 | 1_3:+42019104 | Msa0118820:CDS |
| CCCTCCTTAGTGGATGCACA+AGG | 0.633723 | 1_3:-42019104 | None:intergenic |
| TAATCTTAAGAGTTTGTGGG+AGG | 0.635857 | 1_3:+42020142 | Msa0118820:CDS |
| TTTCTATCCCATCCATATGG+TGG | 0.636196 | 1_3:-42019171 | None:intergenic |
| ACTCAGCAAAAGTTCAATGG+AGG | 0.650485 | 1_3:+42019645 | Msa0118820:CDS |
| AATGGAGGATATAGAAGCTG+GGG | 0.652315 | 1_3:+42019660 | Msa0118820:CDS |
| AATTCATTGACCATAAACAA+GGG | 0.668373 | 1_3:+42019706 | Msa0118820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_3:42019578-42019597 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_3:42019695-42019714 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_3:42019929-42019948 | Msa0118820:CDS | 15.0% |
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_3:42019578-42019597 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_3:42019695-42019714 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_3:42019929-42019948 | Msa0118820:CDS | 15.0% |
| !! | TAAATAATCTTAAGAGTTTG+TGG | + | chr1_3:42020138-42020157 | Msa0118820:CDS | 20.0% |
| !! | AAATAATCTTAAGAGTTTGT+GGG | + | chr1_3:42020139-42020158 | Msa0118820:CDS | 20.0% |
| !! | TAAATAATCTTAAGAGTTTG+TGG | + | chr1_3:42020138-42020157 | Msa0118820:CDS | 20.0% |
| !! | AAATAATCTTAAGAGTTTGT+GGG | + | chr1_3:42020139-42020158 | Msa0118820:CDS | 20.0% |
| ! | CCATTAAATACAACGTAAAA+TGG | - | chr1_3:42019137-42019156 | None:intergenic | 25.0% |
| !! | CCATTTTACGTTGTATTTAA+TGG | + | chr1_3:42019134-42019153 | Msa0118820:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_3:42019231-42019250 | Msa0118820:CDS | 25.0% |
| ! | TAAATGACAAAACTAGCAAA+GGG | - | chr1_3:42019280-42019299 | None:intergenic | 25.0% |
| ! | ATAAATGACAAAACTAGCAA+AGG | - | chr1_3:42019281-42019300 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_3:42019404-42019423 | Msa0118820:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_3:42019495-42019514 | Msa0118820:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_3:42019496-42019515 | Msa0118820:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_3:42019705-42019724 | Msa0118820:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_3:42019706-42019725 | Msa0118820:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_3:42019789-42019808 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_3:42019933-42019952 | Msa0118820:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_3:42020017-42020036 | None:intergenic | 25.0% |
| ! | AAGCAAATTGAAGAAATTAC+AGG | + | chr1_3:42020253-42020272 | Msa0118820:CDS | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_3:42020288-42020307 | Msa0118820:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_3:42020391-42020410 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_3:42020395-42020414 | Msa0118820:CDS | 25.0% |
| ! | CCATTAAATACAACGTAAAA+TGG | - | chr1_3:42019137-42019156 | None:intergenic | 25.0% |
| !! | CCATTTTACGTTGTATTTAA+TGG | + | chr1_3:42019134-42019153 | Msa0118820:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_3:42019231-42019250 | Msa0118820:CDS | 25.0% |
| ! | TAAATGACAAAACTAGCAAA+GGG | - | chr1_3:42019280-42019299 | None:intergenic | 25.0% |
| ! | ATAAATGACAAAACTAGCAA+AGG | - | chr1_3:42019281-42019300 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_3:42019404-42019423 | Msa0118820:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_3:42019495-42019514 | Msa0118820:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_3:42019496-42019515 | Msa0118820:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_3:42019705-42019724 | Msa0118820:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_3:42019706-42019725 | Msa0118820:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_3:42019789-42019808 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_3:42019933-42019952 | Msa0118820:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_3:42020017-42020036 | None:intergenic | 25.0% |
| ! | AAGCAAATTGAAGAAATTAC+AGG | + | chr1_3:42020253-42020272 | Msa0118820:CDS | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_3:42020288-42020307 | Msa0118820:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_3:42020391-42020410 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_3:42020395-42020414 | Msa0118820:CDS | 25.0% |
| AAATGACAAAACTAGCAAAG+GGG | - | chr1_3:42019279-42019298 | None:intergenic | 30.0% | |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_3:42019370-42019389 | Msa0118820:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_3:42019811-42019830 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_3:42019818-42019837 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_3:42019833-42019852 | Msa0118820:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_3:42020223-42020242 | Msa0118820:CDS | 30.0% | |
| AAATGACAAAACTAGCAAAG+GGG | - | chr1_3:42019279-42019298 | None:intergenic | 30.0% | |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_3:42019370-42019389 | Msa0118820:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_3:42019811-42019830 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_3:42019818-42019837 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_3:42019833-42019852 | Msa0118820:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_3:42020223-42020242 | Msa0118820:CDS | 30.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_3:42019163-42019182 | Msa0118820:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_3:42019164-42019183 | Msa0118820:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_3:42019199-42019218 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_3:42019263-42019282 | None:intergenic | 35.0% | |
| ATTCCCTACCGAATAAGTTA+GGG | + | chr1_3:42019337-42019356 | Msa0118820:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_3:42019366-42019385 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_3:42019719-42019738 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_3:42019832-42019851 | Msa0118820:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_3:42019858-42019877 | Msa0118820:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_3:42019966-42019985 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_3:42019967-42019986 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_3:42019974-42019993 | Msa0118820:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_3:42019987-42020006 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_3:42020059-42020078 | Msa0118820:CDS | 35.0% | |
| TAATCTTAAGAGTTTGTGGG+AGG | + | chr1_3:42020142-42020161 | Msa0118820:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_3:42020209-42020228 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_3:42020206-42020225 | Msa0118820:CDS | 35.0% | |
| TTGCTTGCTCTTTCCAAATA+AGG | - | chr1_3:42020239-42020258 | None:intergenic | 35.0% | |
| AGCTTGTCAGAAATCAGAAA+TGG | + | chr1_3:42020362-42020381 | Msa0118820:CDS | 35.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_3:42019163-42019182 | Msa0118820:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_3:42019164-42019183 | Msa0118820:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_3:42019199-42019218 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_3:42019263-42019282 | None:intergenic | 35.0% | |
| ATTCCCTACCGAATAAGTTA+GGG | + | chr1_3:42019337-42019356 | Msa0118820:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_3:42019366-42019385 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_3:42019719-42019738 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_3:42019832-42019851 | Msa0118820:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_3:42019858-42019877 | Msa0118820:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_3:42019966-42019985 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_3:42019967-42019986 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_3:42019974-42019993 | Msa0118820:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_3:42019987-42020006 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_3:42020059-42020078 | Msa0118820:CDS | 35.0% | |
| TAATCTTAAGAGTTTGTGGG+AGG | + | chr1_3:42020142-42020161 | Msa0118820:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_3:42020209-42020228 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_3:42020206-42020225 | Msa0118820:CDS | 35.0% | |
| TTGCTTGCTCTTTCCAAATA+AGG | - | chr1_3:42020239-42020258 | None:intergenic | 35.0% | |
| AGCTTGTCAGAAATCAGAAA+TGG | + | chr1_3:42020362-42020381 | Msa0118820:CDS | 35.0% | |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_3:42019159-42019178 | Msa0118820:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_3:42019174-42019193 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_3:42019177-42019196 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_3:42019206-42019225 | Msa0118820:CDS | 40.0% |
| CAAAGGGGAGAATGAAGATA+AGG | - | chr1_3:42019264-42019283 | None:intergenic | 40.0% | |
| GATTCCCTACCGAATAAGTT+AGG | + | chr1_3:42019336-42019355 | Msa0118820:intron | 40.0% | |
| TTAGGACGCCCTAACTTATT+CGG | - | chr1_3:42019348-42019367 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_3:42019359-42019378 | Msa0118820:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_3:42019642-42019661 | Msa0118820:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_3:42019645-42019664 | Msa0118820:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_3:42019658-42019677 | Msa0118820:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_3:42019659-42019678 | Msa0118820:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_3:42019660-42019679 | Msa0118820:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_3:42019870-42019889 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_3:42019882-42019901 | Msa0118820:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_3:42019988-42020007 | Msa0118820:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_3:42020042-42020061 | Msa0118820:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_3:42020043-42020062 | Msa0118820:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCTT+CGG | + | chr1_3:42020160-42020179 | Msa0118820:CDS | 40.0% | |
| ! | ACAGGACAAAGTTGTTGCTT+TGG | + | chr1_3:42020271-42020290 | Msa0118820:CDS | 40.0% |
| GAAGAGGCTTAGAGATGAAT+TGG | + | chr1_3:42020304-42020323 | Msa0118820:CDS | 40.0% | |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_3:42019159-42019178 | Msa0118820:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_3:42019174-42019193 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_3:42019177-42019196 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_3:42019206-42019225 | Msa0118820:CDS | 40.0% |
| CAAAGGGGAGAATGAAGATA+AGG | - | chr1_3:42019264-42019283 | None:intergenic | 40.0% | |
| GATTCCCTACCGAATAAGTT+AGG | + | chr1_3:42019336-42019355 | Msa0118820:intron | 40.0% | |
| TTAGGACGCCCTAACTTATT+CGG | - | chr1_3:42019348-42019367 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_3:42019359-42019378 | Msa0118820:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_3:42019642-42019661 | Msa0118820:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_3:42019645-42019664 | Msa0118820:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_3:42019658-42019677 | Msa0118820:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_3:42019659-42019678 | Msa0118820:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_3:42019660-42019679 | Msa0118820:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_3:42019870-42019889 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_3:42019882-42019901 | Msa0118820:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_3:42019988-42020007 | Msa0118820:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_3:42020042-42020061 | Msa0118820:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_3:42020043-42020062 | Msa0118820:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCTT+CGG | + | chr1_3:42020160-42020179 | Msa0118820:CDS | 40.0% | |
| ! | ACAGGACAAAGTTGTTGCTT+TGG | + | chr1_3:42020271-42020290 | Msa0118820:CDS | 40.0% |
| GAAGAGGCTTAGAGATGAAT+TGG | + | chr1_3:42020304-42020323 | Msa0118820:CDS | 40.0% | |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_3:42019100-42019119 | Msa0118820:CDS | 45.0% | |
| ACGCCCTAACTTATTCGGTA+GGG | - | chr1_3:42019343-42019362 | None:intergenic | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_3:42019897-42019916 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_3:42019894-42019913 | Msa0118820:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_3:42020049-42020068 | None:intergenic | 45.0% | |
| ! | CTTCGGAATTCGACTTGAGT+TGG | + | chr1_3:42020177-42020196 | Msa0118820:CDS | 45.0% |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_3:42020328-42020347 | Msa0118820:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_3:42020336-42020355 | Msa0118820:CDS | 45.0% |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_3:42019100-42019119 | Msa0118820:CDS | 45.0% | |
| ACGCCCTAACTTATTCGGTA+GGG | - | chr1_3:42019343-42019362 | None:intergenic | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_3:42019897-42019916 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_3:42019894-42019913 | Msa0118820:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_3:42020049-42020068 | None:intergenic | 45.0% | |
| ! | CTTCGGAATTCGACTTGAGT+TGG | + | chr1_3:42020177-42020196 | Msa0118820:CDS | 45.0% |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_3:42020328-42020347 | Msa0118820:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_3:42020336-42020355 | Msa0118820:CDS | 45.0% |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_3:42019103-42019122 | Msa0118820:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_3:42019104-42019123 | Msa0118820:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_3:42019117-42019136 | None:intergenic | 50.0% | |
| GACGCCCTAACTTATTCGGT+AGG | - | chr1_3:42019344-42019363 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_3:42020048-42020067 | None:intergenic | 50.0% | |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_3:42019103-42019122 | Msa0118820:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_3:42019104-42019123 | Msa0118820:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_3:42019117-42019136 | None:intergenic | 50.0% | |
| GACGCCCTAACTTATTCGGT+AGG | - | chr1_3:42019344-42019363 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_3:42020048-42020067 | None:intergenic | 50.0% | |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_3:42019107-42019126 | None:intergenic | 55.0% |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_3:42019107-42019126 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42019078 | 42020433 | 42019078 | ID=Msa0118820;Name=Msa0118820 |
| chr1_3 | mRNA | 42019078 | 42020433 | 42019078 | ID=Msa0118820-mRNA-1;Parent=Msa0118820;Name=Msa0118820-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|321 |
| chr1_3 | exon | 42019078 | 42019252 | 42019078 | ID=Msa0118820-mRNA-1:exon:12718;Parent=Msa0118820-mRNA-1 |
| chr1_3 | exon | 42019643 | 42020433 | 42019643 | ID=Msa0118820-mRNA-1:exon:12719;Parent=Msa0118820-mRNA-1 |
| chr1_3 | CDS | 42019078 | 42019252 | 42019078 | ID=Msa0118820-mRNA-1:cds;Parent=Msa0118820-mRNA-1 |
| chr1_3 | CDS | 42019643 | 42020433 | 42019643 | ID=Msa0118820-mRNA-1:cds;Parent=Msa0118820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
