Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023060 | sp|Q84WU2|UBP13_ARATH | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.15e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0023060 | 0.807162 | 5.783033e-50 | -8.615850e-47 |
| Msa0023060 | Msa0070930 | 0.832338 | 1.000631e-55 | -8.615850e-47 |
| Msa0023060 | Msa0090090 | 0.806891 | 6.599260e-50 | -8.615850e-47 |
| Msa0023060 | Msa0092410 | 0.814644 | 1.387026e-51 | -8.615850e-47 |
| Msa0023060 | Msa0118820 | 0.801479 | 8.831473e-49 | -8.615850e-47 |
| Msa0023060 | Msa0137560 | 0.803942 | 2.739376e-49 | -8.615850e-47 |
| Msa0023060 | Msa0162140 | 0.904517 | 1.130051e-79 | -8.615850e-47 |
| Msa0023060 | Msa0186320 | 0.803604 | 3.220050e-49 | -8.615850e-47 |
| Msa0023060 | Msa0224130 | 0.809761 | 1.612792e-50 | -8.615850e-47 |
| Msa0023060 | Msa0265270 | 0.813404 | 2.604586e-51 | -8.615850e-47 |
| Msa0023060 | Msa0267790 | 0.809425 | 1.904561e-50 | -8.615850e-47 |
| Msa0023060 | Msa0269560 | 0.809813 | 1.571535e-50 | -8.615850e-47 |
| Msa0023060 | Msa0386010 | 0.814006 | 1.919393e-51 | -8.615850e-47 |
| Msa0023060 | Msa0426560 | 0.803738 | 3.020388e-49 | -8.615850e-47 |
| Msa0023060 | Msa0484800 | 0.809077 | 2.261788e-50 | -8.615850e-47 |
| Msa0023060 | Msa0524440 | 0.805179 | 1.512520e-49 | -8.615850e-47 |
| Msa0023060 | Msa0545050 | 0.803337 | 3.658092e-49 | -8.615850e-47 |
| Msa0023060 | Msa0574600 | 0.824877 | 6.361761e-54 | -8.615850e-47 |
| Msa0023060 | Msa0588710 | 0.824434 | 8.091223e-54 | -8.615850e-47 |
| Msa0023060 | Msa0592650 | 0.808085 | 3.682059e-50 | -8.615850e-47 |
| Msa0023060 | Msa0600590 | 0.802924 | 4.453680e-49 | -8.615850e-47 |
| Msa0023060 | Msa0613790 | 0.808070 | 3.710976e-50 | -8.615850e-47 |
| Msa0023060 | Msa0614920 | 0.818006 | 2.454752e-52 | -8.615850e-47 |
| Msa0023060 | Msa0635270 | 0.823314 | 1.480558e-53 | -8.615850e-47 |
| Msa0023060 | Msa0641130 | 0.803147 | 4.005122e-49 | -8.615850e-47 |
| Msa0023060 | Msa0708310 | 0.823881 | 1.091059e-53 | -8.615850e-47 |
| Msa0023060 | Msa0711150 | 0.807814 | 4.206705e-50 | -8.615850e-47 |
| Msa0023060 | Msa0764070 | 0.807763 | 4.311037e-50 | -8.615850e-47 |
| Msa0023060 | Msa0772740 | 0.808000 | 3.839090e-50 | -8.615850e-47 |
| Msa0023060 | Msa0775160 | 0.801639 | 8.187595e-49 | -8.615850e-47 |
| Msa0023060 | Msa0788660 | 0.806582 | 7.671346e-50 | -8.615850e-47 |
| Msa0023060 | Msa0805890 | 0.803832 | 2.887507e-49 | -8.615850e-47 |
| Msa0023060 | Msa0805910 | 0.812247 | 4.666124e-51 | -8.615850e-47 |
| Msa0023060 | Msa0809940 | 0.813148 | 2.964538e-51 | -8.615850e-47 |
| Msa0023060 | Msa0862620 | 0.800034 | 1.741434e-48 | -8.615850e-47 |
| Msa0023060 | Msa0863720 | 0.813675 | 2.270116e-51 | -8.615850e-47 |
| Msa0023060 | Msa0898910 | 0.808409 | 3.141016e-50 | -8.615850e-47 |
| Msa0023060 | Msa0927970 | 0.808795 | 2.598646e-50 | -8.615850e-47 |
| Msa0023060 | Msa1043120 | 0.803299 | 3.725041e-49 | -8.615850e-47 |
| Msa0023060 | Msa1084640 | 0.801853 | 7.401550e-49 | -8.615850e-47 |
| Msa0023060 | Msa1089190 | 0.806330 | 8.667588e-50 | -8.615850e-47 |
| Msa0023060 | Msa1131790 | 0.828266 | 9.891398e-55 | -8.615850e-47 |
| Msa0023060 | Msa1173490 | 0.806092 | 9.730332e-50 | -8.615850e-47 |
| Msa0023060 | Msa1246780 | 0.833717 | 4.542786e-56 | -8.615850e-47 |
| Msa0023060 | Msa1246790 | 0.822515 | 2.273488e-53 | -8.615850e-47 |
| Msa0023060 | Msa1256060 | 0.807514 | 4.869456e-50 | -8.615850e-47 |
| Msa0023060 | Msa1286210 | 0.825914 | 3.613898e-54 | -8.615850e-47 |
| Msa0023060 | Msa1286220 | 0.810126 | 1.346081e-50 | -8.615850e-47 |
| Msa0023060 | Msa1315460 | 0.803300 | 3.722417e-49 | -8.615850e-47 |
| Msa0023060 | Msa1353890 | 0.819537 | 1.102578e-52 | -8.615850e-47 |
| Msa0023060 | Msa1364080 | 0.816168 | 6.354810e-52 | -8.615850e-47 |
| Msa0023060 | Msa1380220 | 0.816435 | 5.537441e-52 | -8.615850e-47 |
| Msa0023060 | Msa1400340 | 0.803799 | 2.933391e-49 | -8.615850e-47 |
| Msa0023060 | Msa1416730 | 0.805831 | 1.103860e-49 | -8.615850e-47 |
| Msa0023060 | Msa1430550 | 0.803476 | 3.422679e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023060 | MtrunA17_Chr1g0176331 | 96.497 | 314 | 11 | 0 | 8 | 321 | 39 | 352 | 0.0 | 629 |
| Msa0023060 | MtrunA17_Chr7g0268251 | 31.657 | 338 | 203 | 8 | 8 | 320 | 43 | 377 | 2.75e-51 | 174 |
| Msa0023060 | MtrunA17_Chr1g0166871 | 31.690 | 284 | 146 | 8 | 35 | 317 | 72 | 308 | 1.24e-37 | 136 |
| Msa0023060 | MtrunA17_Chr8g0338771 | 32.313 | 294 | 146 | 9 | 36 | 293 | 75 | 351 | 7.95e-35 | 130 |
| Msa0023060 | MtrunA17_Chr7g0268221 | 42.657 | 143 | 79 | 2 | 175 | 317 | 9 | 148 | 1.49e-32 | 118 |
| Msa0023060 | MtrunA17_Chr7g0268231 | 44.275 | 131 | 70 | 2 | 189 | 319 | 7 | 134 | 2.53e-27 | 103 |
| Msa0023060 | MtrunA17_Chr2g0294801 | 31.351 | 185 | 117 | 3 | 120 | 304 | 81 | 255 | 1.80e-24 | 100 |
| Msa0023060 | MtrunA17_Chr3g0119031 | 41.237 | 97 | 55 | 2 | 8 | 102 | 85 | 181 | 1.03e-15 | 78.2 |
| Msa0023060 | MtrunA17_Chr5g0439971 | 40.206 | 97 | 56 | 2 | 8 | 102 | 90 | 186 | 2.17e-15 | 77.0 |
| Msa0023060 | MtrunA17_Chr7g0268201 | 40.000 | 95 | 56 | 1 | 225 | 319 | 8 | 101 | 2.62e-15 | 70.9 |
| Msa0023060 | MtrunA17_Chr1g0170261 | 38.144 | 97 | 58 | 2 | 8 | 102 | 87 | 183 | 2.57e-14 | 73.9 |
| Msa0023060 | MtrunA17_Chr5g0443161 | 33.333 | 99 | 63 | 3 | 8 | 103 | 62 | 160 | 4.38e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023060 | AT3G11910.4 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.17e-16 | 81.3 |
| Msa0023060 | AT3G11910.2 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.17e-16 | 81.3 |
| Msa0023060 | AT3G11910.3 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.17e-16 | 81.3 |
| Msa0023060 | AT3G11910.1 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.17e-16 | 81.3 |
| Msa0023060 | AT5G06600.3 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.10e-16 | 80.1 |
| Msa0023060 | AT5G06600.1 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.26e-16 | 80.1 |
| Msa0023060 | AT5G06600.2 | 40.206 | 97 | 56 | 2 | 8 | 102 | 84 | 180 | 3.35e-16 | 80.1 |
Find 63 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAATTTATTGAAATTT+AGG | 0.097481 | 1_1:-43688416 | None:intergenic |
| GATCTATTGGAAATGAATTT+TGG | 0.169942 | 1_1:-43688539 | None:intergenic |
| TTTAGGTGTGAAACCTTATT+TGG | 0.176545 | 1_1:+43688947 | Msa0023060:CDS |
| TAGCATTAACATTCATTTCT+TGG | 0.196289 | 1_1:-43689112 | None:intergenic |
| TCACAAGATACCCTTGTTTA+TGG | 0.211988 | 1_1:-43688440 | None:intergenic |
| TTGTTTGCTCTTTCCAAATA+AGG | 0.219478 | 1_1:-43688960 | None:intergenic |
| CCTTATGTTCAATCTGCTTT+AGG | 0.228849 | 1_1:+43688930 | Msa0023060:CDS |
| TCATCTGAAGATTGATCTAT+TGG | 0.237578 | 1_1:-43688552 | None:intergenic |
| ATTAAGACAATTTATAGATT+TGG | 0.265024 | 1_1:+43688653 | Msa0023060:CDS |
| CAATGGGCGTTTATTTCATT+AGG | 0.313100 | 1_1:+43688783 | Msa0023060:CDS |
| GATGTTGAACCTGATGTTCT+TGG | 0.313287 | 1_1:-43688591 | None:intergenic |
| AAGAACAAGAACATTGTAAA+AGG | 0.329093 | 1_1:+43687949 | Msa0023060:CDS |
| ATCCCGTTTGTTTCGACAAT+GGG | 0.347875 | 1_1:+43688767 | Msa0023060:CDS |
| ACAGGATAAAGTTGTTGCTT+TGG | 0.378179 | 1_1:+43688995 | Msa0023060:CDS |
| GCTGATTCTTTACCACCATA+TGG | 0.384239 | 1_1:+43687877 | Msa0023060:CDS |
| AAACAAATTGAAGAAATTAC+AGG | 0.385891 | 1_1:+43688977 | Msa0023060:CDS |
| CCATTAAATACAATGTAAAA+TGG | 0.387827 | 1_1:-43687852 | None:intergenic |
| ATGAATGTTAATGCTACAAT+AGG | 0.395264 | 1_1:+43689119 | Msa0023060:CDS |
| GAAGAGGCTTAGGGATGAAT+TGG | 0.402385 | 1_1:+43689028 | Msa0023060:CDS |
| CGCCCATTGTCGAAACAAAC+GGG | 0.404272 | 1_1:-43688769 | None:intergenic |
| ATATTAAAATGAAGAGGCTT+AGG | 0.414330 | 1_1:+43689018 | Msa0023060:CDS |
| CCTTGAATCTCTCCTTCATC+TGG | 0.419768 | 1_1:-43688618 | None:intergenic |
| ATTTGACTTTGTATCAAAGA+TGG | 0.420322 | 1_1:-43688738 | None:intergenic |
| CCTAAAGCAGATTGAACATA+AGG | 0.421896 | 1_1:-43688930 | None:intergenic |
| TGGTCAACATCCCTCCTTAG+TGG | 0.451823 | 1_1:-43687832 | None:intergenic |
| CTTCGGAATTCGACTTGAGT+TGG | 0.454885 | 1_1:+43688901 | Msa0023060:CDS |
| AATGAATCTTAAGAGTTTGT+GGG | 0.460449 | 1_1:+43688863 | Msa0023060:CDS |
| ACGCCCATTGTCGAAACAAA+CGG | 0.462214 | 1_1:-43688770 | None:intergenic |
| GTTAGTTCTCGTTAATCAGC+TGG | 0.462338 | 1_1:+43687924 | Msa0023060:CDS |
| GAGACTCAGCAAAAGTTCAA+TGG | 0.462872 | 1_1:+43688366 | Msa0023060:intron |
| ATATGTCTTCATCATGTGAT+AGG | 0.463059 | 1_1:+43687794 | None:intergenic |
| GAGTTTGAGGTTGCAAGGAA+AGG | 0.463515 | 1_1:+43689065 | Msa0023060:CDS |
| TAATGAATCTTAAGAGTTTG+TGG | 0.467304 | 1_1:+43688862 | Msa0023060:CDS |
| ACAATTAGTCCAAGAACATC+AGG | 0.475342 | 1_1:+43688582 | Msa0023060:CDS |
| AGATCAATCTTCAGATGAAA+GGG | 0.481922 | 1_1:+43688557 | Msa0023060:CDS |
| TGCTTCACAAGCAGAGTTTG+AGG | 0.482699 | 1_1:+43689052 | Msa0023060:CDS |
| TCAATGGAGGATATAGAAGC+TGG | 0.483484 | 1_1:+43688382 | Msa0023060:CDS |
| GGGTTATCAGAAATCAGAAA+TGG | 0.484311 | 1_1:+43689086 | Msa0023060:CDS |
| TAGATCAATCTTCAGATGAA+AGG | 0.487674 | 1_1:+43688556 | Msa0023060:CDS |
| CCAGATGAAGGAGAGATTCA+AGG | 0.488343 | 1_1:+43688618 | Msa0023060:CDS |
| AGTTTGAGGTTGCAAGGAAA+GGG | 0.488934 | 1_1:+43689066 | Msa0023060:CDS |
| AGACAATTTATAGATTTGGA+TGG | 0.504986 | 1_1:+43688657 | Msa0023060:CDS |
| ATTCTTTACCACCATATGGA+TGG | 0.506704 | 1_1:+43687881 | Msa0023060:CDS |
| TATTAAAATGAAGAGGCTTA+GGG | 0.508270 | 1_1:+43689019 | Msa0023060:CDS |
| GGAGGAACTAGCAAAATCTT+CGG | 0.515920 | 1_1:+43688884 | Msa0023060:CDS |
| TTCTTTACCACCATATGGAT+GGG | 0.526863 | 1_1:+43687882 | Msa0023060:CDS |
| GTGTTTCTATCCCATCCATA+TGG | 0.542297 | 1_1:-43687892 | None:intergenic |
| AATCCCGTTTGTTTCGACAA+TGG | 0.547890 | 1_1:+43688766 | Msa0023060:CDS |
| AAGCAGAGTTTGAGGTTGCA+AGG | 0.553922 | 1_1:+43689060 | Msa0023060:CDS |
| CTTTGGATATTAAAATGAAG+AGG | 0.557203 | 1_1:+43689012 | Msa0023060:CDS |
| CAATGGAGGATATAGAAGCT+GGG | 0.563913 | 1_1:+43688383 | Msa0023060:CDS |
| AGATCCTTGTGCATCCACTA+AGG | 0.569109 | 1_1:+43687818 | Msa0023060:CDS |
| AACGAGAACTAACTTGAAGA+AGG | 0.575362 | 1_1:-43687914 | None:intergenic |
| TCAACATCTAGTCCAGATGA+AGG | 0.586033 | 1_1:+43688606 | Msa0023060:CDS |
| AAATTCATTGACCATAAACA+AGG | 0.592420 | 1_1:+43688429 | Msa0023060:CDS |
| TCCTTGTGCATCCACTAAGG+AGG | 0.614099 | 1_1:+43687821 | Msa0023060:CDS |
| CCTTGTGCATCCACTAAGGA+GGG | 0.618988 | 1_1:+43687822 | Msa0023060:CDS |
| CCCTCCTTAGTGGATGCACA+AGG | 0.633723 | 1_1:-43687822 | None:intergenic |
| TTTCTATCCCATCCATATGG+TGG | 0.636196 | 1_1:-43687889 | None:intergenic |
| GAATCTTAAGAGTTTGTGGG+AGG | 0.640238 | 1_1:+43688866 | Msa0023060:CDS |
| ACTCAGCAAAAGTTCAATGG+AGG | 0.650485 | 1_1:+43688369 | Msa0023060:CDS |
| AATGGAGGATATAGAAGCTG+GGG | 0.652315 | 1_1:+43688384 | Msa0023060:CDS |
| AATTCATTGACCATAAACAA+GGG | 0.668373 | 1_1:+43688430 | Msa0023060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAACAAAACTAGTAAA+GGG | - | chr1_1:43687998-43688017 | None:intergenic | 15.0% |
| !! | ATAAATAACAAAACTAGTAA+AGG | - | chr1_1:43687999-43688018 | None:intergenic | 15.0% |
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_1:43688302-43688321 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_1:43688419-43688438 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_1:43688653-43688672 | Msa0023060:CDS | 15.0% |
| !! | TAAATAACAAAACTAGTAAA+GGG | - | chr1_1:43687998-43688017 | None:intergenic | 15.0% |
| !! | ATAAATAACAAAACTAGTAA+AGG | - | chr1_1:43687999-43688018 | None:intergenic | 15.0% |
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_1:43688302-43688321 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_1:43688419-43688438 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_1:43688653-43688672 | Msa0023060:CDS | 15.0% |
| !! | CCATTAAATACAATGTAAAA+TGG | - | chr1_1:43687855-43687874 | None:intergenic | 20.0% |
| !!! | CCATTTTACATTGTATTTAA+TGG | + | chr1_1:43687852-43687871 | Msa0023060:CDS | 20.0% |
| !! | AAACAAATTGAAGAAATTAC+AGG | + | chr1_1:43688977-43688996 | Msa0023060:CDS | 20.0% |
| !! | CCATTAAATACAATGTAAAA+TGG | - | chr1_1:43687855-43687874 | None:intergenic | 20.0% |
| !!! | CCATTTTACATTGTATTTAA+TGG | + | chr1_1:43687852-43687871 | Msa0023060:CDS | 20.0% |
| !! | AAACAAATTGAAGAAATTAC+AGG | + | chr1_1:43688977-43688996 | Msa0023060:CDS | 20.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_1:43687949-43687968 | Msa0023060:CDS | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_1:43688128-43688147 | Msa0023060:intron | 25.0% |
| ! | TGTTAATACGTAAATTACAC+AGG | + | chr1_1:43688172-43688191 | Msa0023060:intron | 25.0% |
| ! | GTTAATACGTAAATTACACA+GGG | + | chr1_1:43688173-43688192 | Msa0023060:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_1:43688219-43688238 | Msa0023060:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_1:43688220-43688239 | Msa0023060:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_1:43688429-43688448 | Msa0023060:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_1:43688430-43688449 | Msa0023060:CDS | 25.0% |
| !! | GATCTATTGGAAATGAATTT+TGG | - | chr1_1:43688542-43688561 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_1:43688657-43688676 | Msa0023060:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+TGG | - | chr1_1:43688741-43688760 | None:intergenic | 25.0% |
| ! | TAATGAATCTTAAGAGTTTG+TGG | + | chr1_1:43688862-43688881 | Msa0023060:CDS | 25.0% |
| ! | AATGAATCTTAAGAGTTTGT+GGG | + | chr1_1:43688863-43688882 | Msa0023060:CDS | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_1:43689012-43689031 | Msa0023060:CDS | 25.0% |
| ! | ATATTAAAATGAAGAGGCTT+AGG | + | chr1_1:43689018-43689037 | Msa0023060:CDS | 25.0% |
| ! | TATTAAAATGAAGAGGCTTA+GGG | + | chr1_1:43689019-43689038 | Msa0023060:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_1:43689115-43689134 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_1:43689119-43689138 | Msa0023060:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_1:43687949-43687968 | Msa0023060:CDS | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_1:43688128-43688147 | Msa0023060:intron | 25.0% |
| ! | TGTTAATACGTAAATTACAC+AGG | + | chr1_1:43688172-43688191 | Msa0023060:intron | 25.0% |
| ! | GTTAATACGTAAATTACACA+GGG | + | chr1_1:43688173-43688192 | Msa0023060:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_1:43688219-43688238 | Msa0023060:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_1:43688220-43688239 | Msa0023060:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_1:43688429-43688448 | Msa0023060:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_1:43688430-43688449 | Msa0023060:CDS | 25.0% |
| !! | GATCTATTGGAAATGAATTT+TGG | - | chr1_1:43688542-43688561 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_1:43688657-43688676 | Msa0023060:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+TGG | - | chr1_1:43688741-43688760 | None:intergenic | 25.0% |
| ! | TAATGAATCTTAAGAGTTTG+TGG | + | chr1_1:43688862-43688881 | Msa0023060:CDS | 25.0% |
| ! | AATGAATCTTAAGAGTTTGT+GGG | + | chr1_1:43688863-43688882 | Msa0023060:CDS | 25.0% |
| ! | CTTTGGATATTAAAATGAAG+AGG | + | chr1_1:43689012-43689031 | Msa0023060:CDS | 25.0% |
| ! | ATATTAAAATGAAGAGGCTT+AGG | + | chr1_1:43689018-43689037 | Msa0023060:CDS | 25.0% |
| ! | TATTAAAATGAAGAGGCTTA+GGG | + | chr1_1:43689019-43689038 | Msa0023060:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_1:43689115-43689134 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_1:43689119-43689138 | Msa0023060:CDS | 25.0% |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_1:43688094-43688113 | Msa0023060:intron | 30.0% | |
| ! | GAATTGACGTCATGAATTTT+TGG | - | chr1_1:43688513-43688532 | None:intergenic | 30.0% |
| !!! | TGGAAATGAATTTTGGTTCA+AGG | - | chr1_1:43688535-43688554 | None:intergenic | 30.0% |
| TCATCTGAAGATTGATCTAT+TGG | - | chr1_1:43688555-43688574 | None:intergenic | 30.0% | |
| TAGATCAATCTTCAGATGAA+AGG | + | chr1_1:43688556-43688575 | Msa0023060:CDS | 30.0% | |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_1:43688557-43688576 | Msa0023060:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_1:43688947-43688966 | Msa0023060:CDS | 30.0% | |
| TTGTTTGCTCTTTCCAAATA+AGG | - | chr1_1:43688963-43688982 | None:intergenic | 30.0% | |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_1:43688094-43688113 | Msa0023060:intron | 30.0% | |
| ! | GAATTGACGTCATGAATTTT+TGG | - | chr1_1:43688513-43688532 | None:intergenic | 30.0% |
| !!! | TGGAAATGAATTTTGGTTCA+AGG | - | chr1_1:43688535-43688554 | None:intergenic | 30.0% |
| TCATCTGAAGATTGATCTAT+TGG | - | chr1_1:43688555-43688574 | None:intergenic | 30.0% | |
| TAGATCAATCTTCAGATGAA+AGG | + | chr1_1:43688556-43688575 | Msa0023060:CDS | 30.0% | |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_1:43688557-43688576 | Msa0023060:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_1:43688947-43688966 | Msa0023060:CDS | 30.0% | |
| TTGTTTGCTCTTTCCAAATA+AGG | - | chr1_1:43688963-43688982 | None:intergenic | 30.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_1:43687881-43687900 | Msa0023060:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_1:43687882-43687901 | Msa0023060:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_1:43687917-43687936 | None:intergenic | 35.0% | |
| AAAGGGTAGAATGAAGATCT+AGG | - | chr1_1:43687981-43688000 | None:intergenic | 35.0% | |
| ACGTCCTAAACAAGATCTAA+AGG | + | chr1_1:43688083-43688102 | Msa0023060:intron | 35.0% | |
| ! | TGAGCCTTTAGATCTTGTTT+AGG | - | chr1_1:43688090-43688109 | None:intergenic | 35.0% |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_1:43688443-43688462 | None:intergenic | 35.0% |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_1:43688582-43688601 | Msa0023060:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_1:43688690-43688709 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_1:43688691-43688710 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_1:43688698-43688717 | Msa0023060:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_1:43688711-43688730 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_1:43688783-43688802 | Msa0023060:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_1:43688933-43688952 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_1:43688930-43688949 | Msa0023060:CDS | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_1:43688995-43689014 | Msa0023060:CDS | 35.0% |
| GGGTTATCAGAAATCAGAAA+TGG | + | chr1_1:43689086-43689105 | Msa0023060:CDS | 35.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_1:43687881-43687900 | Msa0023060:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_1:43687882-43687901 | Msa0023060:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_1:43687917-43687936 | None:intergenic | 35.0% | |
| AAAGGGTAGAATGAAGATCT+AGG | - | chr1_1:43687981-43688000 | None:intergenic | 35.0% | |
| ACGTCCTAAACAAGATCTAA+AGG | + | chr1_1:43688083-43688102 | Msa0023060:intron | 35.0% | |
| ! | TGAGCCTTTAGATCTTGTTT+AGG | - | chr1_1:43688090-43688109 | None:intergenic | 35.0% |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_1:43688443-43688462 | None:intergenic | 35.0% |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_1:43688582-43688601 | Msa0023060:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_1:43688690-43688709 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_1:43688691-43688710 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_1:43688698-43688717 | Msa0023060:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_1:43688711-43688730 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_1:43688783-43688802 | Msa0023060:CDS | 35.0% | |
| CCTAAAGCAGATTGAACATA+AGG | - | chr1_1:43688933-43688952 | None:intergenic | 35.0% | |
| CCTTATGTTCAATCTGCTTT+AGG | + | chr1_1:43688930-43688949 | Msa0023060:CDS | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_1:43688995-43689014 | Msa0023060:CDS | 35.0% |
| GGGTTATCAGAAATCAGAAA+TGG | + | chr1_1:43689086-43689105 | Msa0023060:CDS | 35.0% | |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_1:43687877-43687896 | Msa0023060:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_1:43687892-43687911 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_1:43687895-43687914 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_1:43687924-43687943 | Msa0023060:CDS | 40.0% |
| GGTAGAATGAAGATCTAGGT+TGG | - | chr1_1:43687977-43687996 | None:intergenic | 40.0% | |
| ! | CCTAACTTACTGATTGGGTA+GGG | - | chr1_1:43688063-43688082 | None:intergenic | 40.0% |
| ! | TCCTAACTTACTGATTGGGT+AGG | - | chr1_1:43688064-43688083 | None:intergenic | 40.0% |
| ! | GACGTCCTAACTTACTGATT+GGG | - | chr1_1:43688068-43688087 | None:intergenic | 40.0% |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_1:43688366-43688385 | Msa0023060:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_1:43688369-43688388 | Msa0023060:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_1:43688382-43688401 | Msa0023060:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_1:43688383-43688402 | Msa0023060:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_1:43688384-43688403 | Msa0023060:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_1:43688594-43688613 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_1:43688606-43688625 | Msa0023060:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_1:43688712-43688731 | Msa0023060:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_1:43688766-43688785 | Msa0023060:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_1:43688767-43688786 | Msa0023060:CDS | 40.0% | |
| GAATCTTAAGAGTTTGTGGG+AGG | + | chr1_1:43688866-43688885 | Msa0023060:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCTT+CGG | + | chr1_1:43688884-43688903 | Msa0023060:CDS | 40.0% | |
| ! | AGTTTGAGGTTGCAAGGAAA+GGG | + | chr1_1:43689066-43689085 | Msa0023060:CDS | 40.0% |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_1:43687877-43687896 | Msa0023060:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_1:43687892-43687911 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_1:43687895-43687914 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_1:43687924-43687943 | Msa0023060:CDS | 40.0% |
| GGTAGAATGAAGATCTAGGT+TGG | - | chr1_1:43687977-43687996 | None:intergenic | 40.0% | |
| ! | CCTAACTTACTGATTGGGTA+GGG | - | chr1_1:43688063-43688082 | None:intergenic | 40.0% |
| ! | TCCTAACTTACTGATTGGGT+AGG | - | chr1_1:43688064-43688083 | None:intergenic | 40.0% |
| ! | GACGTCCTAACTTACTGATT+GGG | - | chr1_1:43688068-43688087 | None:intergenic | 40.0% |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_1:43688366-43688385 | Msa0023060:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_1:43688369-43688388 | Msa0023060:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_1:43688382-43688401 | Msa0023060:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_1:43688383-43688402 | Msa0023060:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_1:43688384-43688403 | Msa0023060:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_1:43688594-43688613 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_1:43688606-43688625 | Msa0023060:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_1:43688712-43688731 | Msa0023060:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_1:43688766-43688785 | Msa0023060:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_1:43688767-43688786 | Msa0023060:CDS | 40.0% | |
| GAATCTTAAGAGTTTGTGGG+AGG | + | chr1_1:43688866-43688885 | Msa0023060:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCTT+CGG | + | chr1_1:43688884-43688903 | Msa0023060:CDS | 40.0% | |
| ! | AGTTTGAGGTTGCAAGGAAA+GGG | + | chr1_1:43689066-43689085 | Msa0023060:CDS | 40.0% |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_1:43687818-43687837 | Msa0023060:CDS | 45.0% | |
| CCCTACCCAATCAGTAAGTT+AGG | + | chr1_1:43688060-43688079 | Msa0023060:intron | 45.0% | |
| GGACGTCCTAACTTACTGAT+TGG | - | chr1_1:43688069-43688088 | None:intergenic | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_1:43688621-43688640 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_1:43688618-43688637 | Msa0023060:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_1:43688773-43688792 | None:intergenic | 45.0% | |
| ! | CTTCGGAATTCGACTTGAGT+TGG | + | chr1_1:43688901-43688920 | Msa0023060:CDS | 45.0% |
| GAAGAGGCTTAGGGATGAAT+TGG | + | chr1_1:43689028-43689047 | Msa0023060:CDS | 45.0% | |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_1:43689052-43689071 | Msa0023060:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_1:43689060-43689079 | Msa0023060:CDS | 45.0% |
| ! | GAGTTTGAGGTTGCAAGGAA+AGG | + | chr1_1:43689065-43689084 | Msa0023060:CDS | 45.0% |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_1:43687818-43687837 | Msa0023060:CDS | 45.0% | |
| CCCTACCCAATCAGTAAGTT+AGG | + | chr1_1:43688060-43688079 | Msa0023060:intron | 45.0% | |
| GGACGTCCTAACTTACTGAT+TGG | - | chr1_1:43688069-43688088 | None:intergenic | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_1:43688621-43688640 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_1:43688618-43688637 | Msa0023060:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_1:43688773-43688792 | None:intergenic | 45.0% | |
| ! | CTTCGGAATTCGACTTGAGT+TGG | + | chr1_1:43688901-43688920 | Msa0023060:CDS | 45.0% |
| GAAGAGGCTTAGGGATGAAT+TGG | + | chr1_1:43689028-43689047 | Msa0023060:CDS | 45.0% | |
| TGCTTCACAAGCAGAGTTTG+AGG | + | chr1_1:43689052-43689071 | Msa0023060:CDS | 45.0% | |
| ! | AAGCAGAGTTTGAGGTTGCA+AGG | + | chr1_1:43689060-43689079 | Msa0023060:CDS | 45.0% |
| ! | GAGTTTGAGGTTGCAAGGAA+AGG | + | chr1_1:43689065-43689084 | Msa0023060:CDS | 45.0% |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_1:43687821-43687840 | Msa0023060:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_1:43687822-43687841 | Msa0023060:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_1:43687835-43687854 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_1:43688772-43688791 | None:intergenic | 50.0% | |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_1:43687821-43687840 | Msa0023060:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_1:43687822-43687841 | Msa0023060:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_1:43687835-43687854 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_1:43688772-43688791 | None:intergenic | 50.0% | |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_1:43687825-43687844 | None:intergenic | 55.0% |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_1:43687825-43687844 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 43687796 | 43689157 | 43687796 | ID=Msa0023060;Name=Msa0023060 |
| chr1_1 | mRNA | 43687796 | 43689157 | 43687796 | ID=Msa0023060-mRNA-1;Parent=Msa0023060;Name=Msa0023060-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|1|0|1|1|0.5|2|0|321 |
| chr1_1 | exon | 43687796 | 43687970 | 43687796 | ID=Msa0023060-mRNA-1:exon:12648;Parent=Msa0023060-mRNA-1 |
| chr1_1 | exon | 43688367 | 43689157 | 43688367 | ID=Msa0023060-mRNA-1:exon:12649;Parent=Msa0023060-mRNA-1 |
| chr1_1 | CDS | 43687796 | 43687970 | 43687796 | ID=Msa0023060-mRNA-1:cds;Parent=Msa0023060-mRNA-1 |
| chr1_1 | CDS | 43688367 | 43689157 | 43688367 | ID=Msa0023060-mRNA-1:cds;Parent=Msa0023060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
