Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070930 | XP_024632996.1 | 96.497 | 314 | 11 | 0 | 8 | 321 | 39 | 352 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070930 | sp|Q84WU2|UBP13_ARATH | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.12e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070930 | A0A396JXC2 | 96.497 | 314 | 11 | 0 | 8 | 321 | 39 | 352 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023060 | Msa0070930 | 0.832338 | 1.000631e-55 | -8.615850e-47 |
| Msa0026630 | Msa0070930 | 0.803955 | 2.722959e-49 | -8.615850e-47 |
| Msa0035020 | Msa0070930 | 0.804538 | 2.058556e-49 | -8.615850e-47 |
| Msa0070930 | Msa0090150 | 0.801924 | 7.155254e-49 | -8.615850e-47 |
| Msa0070930 | Msa0090380 | 0.819037 | 1.433240e-52 | -8.615850e-47 |
| Msa0070930 | Msa0118820 | 0.935811 | 4.706123e-97 | -8.615850e-47 |
| Msa0070930 | Msa0137800 | 0.804226 | 2.391922e-49 | -8.615850e-47 |
| Msa0070930 | Msa0137860 | 0.815597 | 8.521119e-52 | -8.615850e-47 |
| Msa0070930 | Msa0162140 | 0.843111 | 1.713217e-58 | -8.615850e-47 |
| Msa0070930 | Msa0187310 | 0.806730 | 7.138922e-50 | -8.615850e-47 |
| Msa0070930 | Msa0632650 | 0.813400 | 2.609497e-51 | -8.615850e-47 |
| Msa0070930 | Msa0635270 | 0.802601 | 5.193519e-49 | -8.615850e-47 |
| Msa0070930 | Msa0945130 | 0.812982 | 3.223257e-51 | -8.615850e-47 |
| Msa0070930 | Msa1312440 | 0.824635 | 7.252800e-54 | -8.615850e-47 |
| Msa0070930 | Msa1433410 | 0.819579 | 1.078750e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070930 | MtrunA17_Chr1g0176331 | 96.497 | 314 | 11 | 0 | 8 | 321 | 39 | 352 | 0.0 | 632 |
| Msa0070930 | MtrunA17_Chr7g0268251 | 31.579 | 342 | 198 | 7 | 8 | 320 | 43 | 377 | 1.44e-52 | 177 |
| Msa0070930 | MtrunA17_Chr1g0166871 | 31.338 | 284 | 147 | 8 | 35 | 317 | 72 | 308 | 3.36e-37 | 135 |
| Msa0070930 | MtrunA17_Chr8g0338771 | 32.765 | 293 | 146 | 9 | 36 | 293 | 75 | 351 | 6.96e-37 | 135 |
| Msa0070930 | MtrunA17_Chr7g0268221 | 41.259 | 143 | 81 | 2 | 175 | 317 | 9 | 148 | 1.07e-31 | 116 |
| Msa0070930 | MtrunA17_Chr7g0268231 | 41.985 | 131 | 73 | 2 | 189 | 319 | 7 | 134 | 1.22e-25 | 99.8 |
| Msa0070930 | MtrunA17_Chr2g0294801 | 31.319 | 182 | 115 | 3 | 123 | 304 | 84 | 255 | 9.29e-24 | 98.2 |
| Msa0070930 | MtrunA17_Chr3g0119031 | 41.237 | 97 | 55 | 2 | 8 | 102 | 85 | 181 | 9.75e-16 | 78.2 |
| Msa0070930 | MtrunA17_Chr5g0439971 | 40.206 | 97 | 56 | 2 | 8 | 102 | 90 | 186 | 2.05e-15 | 77.0 |
| Msa0070930 | MtrunA17_Chr1g0170261 | 38.144 | 97 | 58 | 2 | 8 | 102 | 87 | 183 | 2.55e-14 | 73.9 |
| Msa0070930 | MtrunA17_Chr7g0268201 | 37.234 | 94 | 58 | 1 | 226 | 319 | 9 | 101 | 2.15e-13 | 65.5 |
| Msa0070930 | MtrunA17_Chr5g0443161 | 34.021 | 97 | 61 | 3 | 8 | 101 | 62 | 158 | 4.51e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070930 | AT3G11910.4 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.14e-16 | 81.3 |
| Msa0070930 | AT3G11910.2 | 42.268 | 97 | 54 | 2 | 8 | 102 | 83 | 179 | 1.14e-16 | 81.3 |
| Msa0070930 | AT3G11910.3 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.14e-16 | 81.3 |
| Msa0070930 | AT3G11910.1 | 42.268 | 97 | 54 | 2 | 8 | 102 | 84 | 180 | 1.14e-16 | 81.3 |
| Msa0070930 | AT5G06600.2 | 40.206 | 97 | 56 | 2 | 8 | 102 | 84 | 180 | 2.97e-16 | 80.1 |
| Msa0070930 | AT5G06600.1 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.03e-16 | 80.1 |
| Msa0070930 | AT5G06600.3 | 40.206 | 97 | 56 | 2 | 8 | 102 | 85 | 181 | 3.07e-16 | 80.1 |
Find 59 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAATTTATTGAAATTT+AGG | 0.097481 | 1_2:-41940733 | None:intergenic |
| TTTAGGTGTGAAACCTTATT+TGG | 0.176545 | 1_2:+41941264 | Msa0070930:CDS |
| TAGCATTAACATTCATTTCT+TGG | 0.196289 | 1_2:-41941429 | None:intergenic |
| TCACAAGATACCCTTGTTTA+TGG | 0.211988 | 1_2:-41940757 | None:intergenic |
| TTGCTTGCTCTTTCCAAATA+AGG | 0.215332 | 1_2:-41941277 | None:intergenic |
| GATCTGTTAGAGATGAATTT+TGG | 0.232734 | 1_2:-41940856 | None:intergenic |
| ATTAAGACAATTTATAGATT+TGG | 0.265024 | 1_2:+41940970 | Msa0070930:CDS |
| CCTTATGTTAAATCTGCTTT+AGG | 0.292555 | 1_2:+41941247 | Msa0070930:CDS |
| CAATGGGCGTTTATTTCATT+AGG | 0.313100 | 1_2:+41941100 | Msa0070930:CDS |
| GATGTTGAACCTGATGTTCT+TGG | 0.313287 | 1_2:-41940908 | None:intergenic |
| AAGAACAAGAACATTGTAAA+AGG | 0.329093 | 1_2:+41940268 | Msa0070930:CDS |
| CCATTAAATACAACGTAAAA+TGG | 0.335460 | 1_2:-41940171 | None:intergenic |
| ATCCCGTTTGTTTCGACAAT+GGG | 0.347875 | 1_2:+41941084 | Msa0070930:CDS |
| GAAGAAGCTTAGGGATGAAT+TGG | 0.365012 | 1_2:+41941345 | Msa0070930:CDS |
| ACAGGATAAAGTTGTTGCTT+TGG | 0.378179 | 1_2:+41941312 | Msa0070930:CDS |
| AAGCAAATTGAAGAAATTAC+AGG | 0.378860 | 1_2:+41941294 | Msa0070930:CDS |
| GCTGATTCTTTACCACCATA+TGG | 0.384239 | 1_2:+41940196 | Msa0070930:CDS |
| ATGAATGTTAATGCTACAAT+AGG | 0.395264 | 1_2:+41941436 | Msa0070930:CDS |
| CCTTGAATCTCTCCTTCATC+TGG | 0.397555 | 1_2:-41940935 | None:intergenic |
| CGCCCATTGTCGAAACAAAC+GGG | 0.404272 | 1_2:-41941086 | None:intergenic |
| ATATTAAAATGAAGAAGCTT+AGG | 0.428129 | 1_2:+41941335 | Msa0070930:CDS |
| TAAACAATCTTAAGAGTTTG+TGG | 0.445086 | 1_2:+41941179 | Msa0070930:CDS |
| TGGTCAACATCCCTCCTTAG+TGG | 0.451823 | 1_2:-41940151 | None:intergenic |
| GGCTTATCAGAAATCAGAAA+TGG | 0.452452 | 1_2:+41941403 | Msa0070930:CDS |
| AGATCAATCTTCAGATGAAA+GGG | 0.455070 | 1_2:+41940874 | Msa0070930:CDS |
| CATCGGAATTCGACTTGAGT+TGG | 0.457368 | 1_2:+41941218 | Msa0070930:CDS |
| ACGCCCATTGTCGAAACAAA+CGG | 0.462214 | 1_2:-41941087 | None:intergenic |
| GTTAGTTCTCGTTAATCAGC+TGG | 0.462338 | 1_2:+41940243 | Msa0070930:CDS |
| GAGACTCAGCAAAAGTTCAA+TGG | 0.462872 | 1_2:+41940683 | Msa0070930:intron |
| ATATGTCTTCATCATGTGAT+AGG | 0.463059 | 1_2:+41940113 | None:intergenic |
| CCTAAAGCAGATTTAACATA+AGG | 0.466436 | 1_2:-41941247 | None:intergenic |
| ACAATTAGTCCAAGAACATC+AGG | 0.475342 | 1_2:+41940899 | Msa0070930:CDS |
| CAGATCAATCTTCAGATGAA+AGG | 0.479808 | 1_2:+41940873 | Msa0070930:CDS |
| TCAATGGAGGATATAGAAGC+TGG | 0.483484 | 1_2:+41940699 | Msa0070930:CDS |
| CCAGATGAAGGAGAGATTCA+AGG | 0.494194 | 1_2:+41940935 | Msa0070930:CDS |
| GAGTTTGAAGTTGCAAGGAA+AGG | 0.497249 | 1_2:+41941382 | Msa0070930:CDS |
| AAACAATCTTAAGAGTTTGT+GGG | 0.500829 | 1_2:+41941180 | Msa0070930:CDS |
| TATTAAAATGAAGAAGCTTA+GGG | 0.501449 | 1_2:+41941336 | Msa0070930:CDS |
| AGACAATTTATAGATTTGGA+TGG | 0.504986 | 1_2:+41940974 | Msa0070930:CDS |
| ATTCTTTACCACCATATGGA+TGG | 0.506704 | 1_2:+41940200 | Msa0070930:CDS |
| TTCTTTACCACCATATGGAT+GGG | 0.526863 | 1_2:+41940201 | Msa0070930:CDS |
| GTGTTTCTATCCCATCCATA+TGG | 0.542297 | 1_2:-41940211 | None:intergenic |
| AATCCCGTTTGTTTCGACAA+TGG | 0.547890 | 1_2:+41941083 | Msa0070930:CDS |
| AAGCAGAGTTTGAAGTTGCA+AGG | 0.552990 | 1_2:+41941377 | Msa0070930:CDS |
| ATTTGACTTTGTATCAAAGA+CGG | 0.558711 | 1_2:-41941055 | None:intergenic |
| CAATGGAGGATATAGAAGCT+GGG | 0.563913 | 1_2:+41940700 | Msa0070930:CDS |
| AGATCCTTGTGCATCCACTA+AGG | 0.569109 | 1_2:+41940137 | Msa0070930:CDS |
| AACGAGAACTAACTTGAAGA+AGG | 0.575362 | 1_2:-41940233 | None:intergenic |
| TCAACATCTAGTCCAGATGA+AGG | 0.586033 | 1_2:+41940923 | Msa0070930:CDS |
| AAATTCATTGACCATAAACA+AGG | 0.592420 | 1_2:+41940746 | Msa0070930:CDS |
| TCCTTGTGCATCCACTAAGG+AGG | 0.614099 | 1_2:+41940140 | Msa0070930:CDS |
| GGAGGAACTAGCAAAATCAT+CGG | 0.617394 | 1_2:+41941201 | Msa0070930:CDS |
| CCTTGTGCATCCACTAAGGA+GGG | 0.618988 | 1_2:+41940141 | Msa0070930:CDS |
| CAATCTTAAGAGTTTGTGGG+AGG | 0.629922 | 1_2:+41941183 | Msa0070930:CDS |
| CCCTCCTTAGTGGATGCACA+AGG | 0.633723 | 1_2:-41940141 | None:intergenic |
| TTTCTATCCCATCCATATGG+TGG | 0.636196 | 1_2:-41940208 | None:intergenic |
| ACTCAGCAAAAGTTCAATGG+AGG | 0.650485 | 1_2:+41940686 | Msa0070930:CDS |
| AATGGAGGATATAGAAGCTG+GGG | 0.652315 | 1_2:+41940701 | Msa0070930:CDS |
| AATTCATTGACCATAAACAA+GGG | 0.668373 | 1_2:+41940747 | Msa0070930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_2:41940619-41940638 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_2:41940736-41940755 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_2:41940970-41940989 | Msa0070930:CDS | 15.0% |
| !! | ACAAAAAATATTATCATTAG+AGG | - | chr1_2:41940619-41940638 | None:intergenic | 15.0% |
| !! | CAATGAATTTATTGAAATTT+AGG | - | chr1_2:41940736-41940755 | None:intergenic | 15.0% |
| !! | ATTAAGACAATTTATAGATT+TGG | + | chr1_2:41940970-41940989 | Msa0070930:CDS | 15.0% |
| !! | TAAATGACAAAACTAGTAAA+GGG | - | chr1_2:41940317-41940336 | None:intergenic | 20.0% |
| !! | ATAAATGACAAAACTAGTAA+AGG | - | chr1_2:41940318-41940337 | None:intergenic | 20.0% |
| !! | ATATTAAAATGAAGAAGCTT+AGG | + | chr1_2:41941335-41941354 | Msa0070930:CDS | 20.0% |
| !! | TATTAAAATGAAGAAGCTTA+GGG | + | chr1_2:41941336-41941355 | Msa0070930:CDS | 20.0% |
| !! | TAAATGACAAAACTAGTAAA+GGG | - | chr1_2:41940317-41940336 | None:intergenic | 20.0% |
| !! | ATAAATGACAAAACTAGTAA+AGG | - | chr1_2:41940318-41940337 | None:intergenic | 20.0% |
| !! | ATATTAAAATGAAGAAGCTT+AGG | + | chr1_2:41941335-41941354 | Msa0070930:CDS | 20.0% |
| !! | TATTAAAATGAAGAAGCTTA+GGG | + | chr1_2:41941336-41941355 | Msa0070930:CDS | 20.0% |
| ! | CCATTAAATACAACGTAAAA+TGG | - | chr1_2:41940174-41940193 | None:intergenic | 25.0% |
| !! | CCATTTTACGTTGTATTTAA+TGG | + | chr1_2:41940171-41940190 | Msa0070930:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_2:41940268-41940287 | Msa0070930:CDS | 25.0% |
| ! | AAATGACAAAACTAGTAAAG+GGG | - | chr1_2:41940316-41940335 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_2:41940445-41940464 | Msa0070930:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_2:41940536-41940555 | Msa0070930:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_2:41940537-41940556 | Msa0070930:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_2:41940746-41940765 | Msa0070930:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_2:41940747-41940766 | Msa0070930:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_2:41940830-41940849 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_2:41940974-41940993 | Msa0070930:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_2:41941058-41941077 | None:intergenic | 25.0% |
| ! | TAAACAATCTTAAGAGTTTG+TGG | + | chr1_2:41941179-41941198 | Msa0070930:CDS | 25.0% |
| ! | AAACAATCTTAAGAGTTTGT+GGG | + | chr1_2:41941180-41941199 | Msa0070930:CDS | 25.0% |
| ! | AAGCAAATTGAAGAAATTAC+AGG | + | chr1_2:41941294-41941313 | Msa0070930:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_2:41941432-41941451 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_2:41941436-41941455 | Msa0070930:CDS | 25.0% |
| ! | CCATTAAATACAACGTAAAA+TGG | - | chr1_2:41940174-41940193 | None:intergenic | 25.0% |
| !! | CCATTTTACGTTGTATTTAA+TGG | + | chr1_2:41940171-41940190 | Msa0070930:CDS | 25.0% |
| ! | AAGAACAAGAACATTGTAAA+AGG | + | chr1_2:41940268-41940287 | Msa0070930:CDS | 25.0% |
| ! | AAATGACAAAACTAGTAAAG+GGG | - | chr1_2:41940316-41940335 | None:intergenic | 25.0% |
| ! | ATGAACAGTTTGATCTTAAT+AGG | + | chr1_2:41940445-41940464 | Msa0070930:intron | 25.0% |
| !! | ATTTTAGACTTCTAGATGAA+AGG | + | chr1_2:41940536-41940555 | Msa0070930:intron | 25.0% |
| !! | TTTTAGACTTCTAGATGAAA+GGG | + | chr1_2:41940537-41940556 | Msa0070930:intron | 25.0% |
| ! | AAATTCATTGACCATAAACA+AGG | + | chr1_2:41940746-41940765 | Msa0070930:CDS | 25.0% |
| ! | AATTCATTGACCATAAACAA+GGG | + | chr1_2:41940747-41940766 | Msa0070930:CDS | 25.0% |
| !! | GAATTGATGTCATGAATTTT+TGG | - | chr1_2:41940830-41940849 | None:intergenic | 25.0% |
| ! | AGACAATTTATAGATTTGGA+TGG | + | chr1_2:41940974-41940993 | Msa0070930:CDS | 25.0% |
| !! | ATTTGACTTTGTATCAAAGA+CGG | - | chr1_2:41941058-41941077 | None:intergenic | 25.0% |
| ! | TAAACAATCTTAAGAGTTTG+TGG | + | chr1_2:41941179-41941198 | Msa0070930:CDS | 25.0% |
| ! | AAACAATCTTAAGAGTTTGT+GGG | + | chr1_2:41941180-41941199 | Msa0070930:CDS | 25.0% |
| ! | AAGCAAATTGAAGAAATTAC+AGG | + | chr1_2:41941294-41941313 | Msa0070930:CDS | 25.0% |
| ! | TAGCATTAACATTCATTTCT+TGG | - | chr1_2:41941432-41941451 | None:intergenic | 25.0% |
| ! | ATGAATGTTAATGCTACAAT+AGG | + | chr1_2:41941436-41941455 | Msa0070930:CDS | 25.0% |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_2:41940411-41940430 | Msa0070930:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_2:41940852-41940871 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_2:41940859-41940878 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_2:41940874-41940893 | Msa0070930:CDS | 30.0% | |
| CCTAAAGCAGATTTAACATA+AGG | - | chr1_2:41941250-41941269 | None:intergenic | 30.0% | |
| CCTTATGTTAAATCTGCTTT+AGG | + | chr1_2:41941247-41941266 | Msa0070930:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_2:41941264-41941283 | Msa0070930:CDS | 30.0% | |
| AAGATCTAAAGGCTCATATT+TGG | + | chr1_2:41940411-41940430 | Msa0070930:intron | 30.0% | |
| !!! | TAGAGATGAATTTTGGTTCA+AGG | - | chr1_2:41940852-41940871 | None:intergenic | 30.0% |
| ! | GATCTGTTAGAGATGAATTT+TGG | - | chr1_2:41940859-41940878 | None:intergenic | 30.0% |
| AGATCAATCTTCAGATGAAA+GGG | + | chr1_2:41940874-41940893 | Msa0070930:CDS | 30.0% | |
| CCTAAAGCAGATTTAACATA+AGG | - | chr1_2:41941250-41941269 | None:intergenic | 30.0% | |
| CCTTATGTTAAATCTGCTTT+AGG | + | chr1_2:41941247-41941266 | Msa0070930:CDS | 30.0% | |
| TTTAGGTGTGAAACCTTATT+TGG | + | chr1_2:41941264-41941283 | Msa0070930:CDS | 30.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_2:41940200-41940219 | Msa0070930:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_2:41940201-41940220 | Msa0070930:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_2:41940236-41940255 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_2:41940300-41940319 | None:intergenic | 35.0% | |
| TAAAGGGGAGAATGAAGATA+AGG | - | chr1_2:41940301-41940320 | None:intergenic | 35.0% | |
| !! | CCTAACTTAATGATTCGGTA+GGG | - | chr1_2:41940380-41940399 | None:intergenic | 35.0% |
| CCTACCGAATCATTAAGTTA+GGG | + | chr1_2:41940378-41940397 | Msa0070930:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_2:41940407-41940426 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_2:41940760-41940779 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_2:41940873-41940892 | Msa0070930:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_2:41940899-41940918 | Msa0070930:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_2:41941007-41941026 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_2:41941008-41941027 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_2:41941015-41941034 | Msa0070930:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_2:41941028-41941047 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_2:41941100-41941119 | Msa0070930:CDS | 35.0% | |
| TTGCTTGCTCTTTCCAAATA+AGG | - | chr1_2:41941280-41941299 | None:intergenic | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_2:41941312-41941331 | Msa0070930:CDS | 35.0% |
| GGCTTATCAGAAATCAGAAA+TGG | + | chr1_2:41941403-41941422 | Msa0070930:CDS | 35.0% | |
| ATTCTTTACCACCATATGGA+TGG | + | chr1_2:41940200-41940219 | Msa0070930:CDS | 35.0% | |
| TTCTTTACCACCATATGGAT+GGG | + | chr1_2:41940201-41940220 | Msa0070930:CDS | 35.0% | |
| AACGAGAACTAACTTGAAGA+AGG | - | chr1_2:41940236-41940255 | None:intergenic | 35.0% | |
| AAAGGGGAGAATGAAGATAA+GGG | - | chr1_2:41940300-41940319 | None:intergenic | 35.0% | |
| TAAAGGGGAGAATGAAGATA+AGG | - | chr1_2:41940301-41940320 | None:intergenic | 35.0% | |
| !! | CCTAACTTAATGATTCGGTA+GGG | - | chr1_2:41940380-41940399 | None:intergenic | 35.0% |
| CCTACCGAATCATTAAGTTA+GGG | + | chr1_2:41940378-41940397 | Msa0070930:intron | 35.0% | |
| TGAGCCTTTAGATCTTGATT+AGG | - | chr1_2:41940407-41940426 | None:intergenic | 35.0% | |
| ! | TCACAAGATACCCTTGTTTA+TGG | - | chr1_2:41940760-41940779 | None:intergenic | 35.0% |
| CAGATCAATCTTCAGATGAA+AGG | + | chr1_2:41940873-41940892 | Msa0070930:CDS | 35.0% | |
| ACAATTAGTCCAAGAACATC+AGG | + | chr1_2:41940899-41940918 | Msa0070930:CDS | 35.0% | |
| ! | GGAACAAAATGCTTTTCTTC+GGG | - | chr1_2:41941007-41941026 | None:intergenic | 35.0% |
| ! | CGGAACAAAATGCTTTTCTT+CGG | - | chr1_2:41941008-41941027 | None:intergenic | 35.0% |
| !! | GCATTTTGTTCCGTTTTTAG+AGG | + | chr1_2:41941015-41941034 | Msa0070930:CDS | 35.0% |
| ! | GTGCAAACTTCCTCTAAAAA+CGG | - | chr1_2:41941028-41941047 | None:intergenic | 35.0% |
| CAATGGGCGTTTATTTCATT+AGG | + | chr1_2:41941100-41941119 | Msa0070930:CDS | 35.0% | |
| TTGCTTGCTCTTTCCAAATA+AGG | - | chr1_2:41941280-41941299 | None:intergenic | 35.0% | |
| ! | ACAGGATAAAGTTGTTGCTT+TGG | + | chr1_2:41941312-41941331 | Msa0070930:CDS | 35.0% |
| GGCTTATCAGAAATCAGAAA+TGG | + | chr1_2:41941403-41941422 | Msa0070930:CDS | 35.0% | |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_2:41940196-41940215 | Msa0070930:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_2:41940211-41940230 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_2:41940214-41940233 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_2:41940243-41940262 | Msa0070930:CDS | 40.0% |
| CCCTACCGAATCATTAAGTT+AGG | + | chr1_2:41940377-41940396 | Msa0070930:intron | 40.0% | |
| !! | CCCTAACTTAATGATTCGGT+AGG | - | chr1_2:41940381-41940400 | None:intergenic | 40.0% |
| GACGCCCTAACTTAATGATT+CGG | - | chr1_2:41940385-41940404 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_2:41940400-41940419 | Msa0070930:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_2:41940683-41940702 | Msa0070930:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_2:41940686-41940705 | Msa0070930:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_2:41940699-41940718 | Msa0070930:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_2:41940700-41940719 | Msa0070930:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_2:41940701-41940720 | Msa0070930:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_2:41940911-41940930 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_2:41940923-41940942 | Msa0070930:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_2:41941029-41941048 | Msa0070930:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_2:41941083-41941102 | Msa0070930:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_2:41941084-41941103 | Msa0070930:CDS | 40.0% | |
| CAATCTTAAGAGTTTGTGGG+AGG | + | chr1_2:41941183-41941202 | Msa0070930:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCAT+CGG | + | chr1_2:41941201-41941220 | Msa0070930:CDS | 40.0% | |
| GAAGAAGCTTAGGGATGAAT+TGG | + | chr1_2:41941345-41941364 | Msa0070930:CDS | 40.0% | |
| ! | AAGCAGAGTTTGAAGTTGCA+AGG | + | chr1_2:41941377-41941396 | Msa0070930:CDS | 40.0% |
| ! | GAGTTTGAAGTTGCAAGGAA+AGG | + | chr1_2:41941382-41941401 | Msa0070930:CDS | 40.0% |
| ! | GCTGATTCTTTACCACCATA+TGG | + | chr1_2:41940196-41940215 | Msa0070930:CDS | 40.0% |
| TTTCTATCCCATCCATATGG+TGG | - | chr1_2:41940211-41940230 | None:intergenic | 40.0% | |
| ! | GTGTTTCTATCCCATCCATA+TGG | - | chr1_2:41940214-41940233 | None:intergenic | 40.0% |
| ! | GTTAGTTCTCGTTAATCAGC+TGG | + | chr1_2:41940243-41940262 | Msa0070930:CDS | 40.0% |
| CCCTACCGAATCATTAAGTT+AGG | + | chr1_2:41940377-41940396 | Msa0070930:intron | 40.0% | |
| !! | CCCTAACTTAATGATTCGGT+AGG | - | chr1_2:41940381-41940400 | None:intergenic | 40.0% |
| GACGCCCTAACTTAATGATT+CGG | - | chr1_2:41940385-41940404 | None:intergenic | 40.0% | |
| GCGTCCTAATCAAGATCTAA+AGG | + | chr1_2:41940400-41940419 | Msa0070930:intron | 40.0% | |
| GAGACTCAGCAAAAGTTCAA+TGG | + | chr1_2:41940683-41940702 | Msa0070930:intron | 40.0% | |
| ACTCAGCAAAAGTTCAATGG+AGG | + | chr1_2:41940686-41940705 | Msa0070930:CDS | 40.0% | |
| TCAATGGAGGATATAGAAGC+TGG | + | chr1_2:41940699-41940718 | Msa0070930:CDS | 40.0% | |
| CAATGGAGGATATAGAAGCT+GGG | + | chr1_2:41940700-41940719 | Msa0070930:CDS | 40.0% | |
| AATGGAGGATATAGAAGCTG+GGG | + | chr1_2:41940701-41940720 | Msa0070930:CDS | 40.0% | |
| GATGTTGAACCTGATGTTCT+TGG | - | chr1_2:41940911-41940930 | None:intergenic | 40.0% | |
| TCAACATCTAGTCCAGATGA+AGG | + | chr1_2:41940923-41940942 | Msa0070930:CDS | 40.0% | |
| !! | TTTTAGAGGAAGTTTGCACG+TGG | + | chr1_2:41941029-41941048 | Msa0070930:CDS | 40.0% |
| AATCCCGTTTGTTTCGACAA+TGG | + | chr1_2:41941083-41941102 | Msa0070930:CDS | 40.0% | |
| ATCCCGTTTGTTTCGACAAT+GGG | + | chr1_2:41941084-41941103 | Msa0070930:CDS | 40.0% | |
| CAATCTTAAGAGTTTGTGGG+AGG | + | chr1_2:41941183-41941202 | Msa0070930:CDS | 40.0% | |
| GGAGGAACTAGCAAAATCAT+CGG | + | chr1_2:41941201-41941220 | Msa0070930:CDS | 40.0% | |
| GAAGAAGCTTAGGGATGAAT+TGG | + | chr1_2:41941345-41941364 | Msa0070930:CDS | 40.0% | |
| ! | AAGCAGAGTTTGAAGTTGCA+AGG | + | chr1_2:41941377-41941396 | Msa0070930:CDS | 40.0% |
| ! | GAGTTTGAAGTTGCAAGGAA+AGG | + | chr1_2:41941382-41941401 | Msa0070930:CDS | 40.0% |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_2:41940137-41940156 | Msa0070930:CDS | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_2:41940938-41940957 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_2:41940935-41940954 | Msa0070930:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_2:41941090-41941109 | None:intergenic | 45.0% | |
| ! | CATCGGAATTCGACTTGAGT+TGG | + | chr1_2:41941218-41941237 | Msa0070930:CDS | 45.0% |
| AGATCCTTGTGCATCCACTA+AGG | + | chr1_2:41940137-41940156 | Msa0070930:CDS | 45.0% | |
| CCTTGAATCTCTCCTTCATC+TGG | - | chr1_2:41940938-41940957 | None:intergenic | 45.0% | |
| CCAGATGAAGGAGAGATTCA+AGG | + | chr1_2:41940935-41940954 | Msa0070930:CDS | 45.0% | |
| ACGCCCATTGTCGAAACAAA+CGG | - | chr1_2:41941090-41941109 | None:intergenic | 45.0% | |
| ! | CATCGGAATTCGACTTGAGT+TGG | + | chr1_2:41941218-41941237 | Msa0070930:CDS | 45.0% |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_2:41940140-41940159 | Msa0070930:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_2:41940141-41940160 | Msa0070930:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_2:41940154-41940173 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_2:41941089-41941108 | None:intergenic | 50.0% | |
| TCCTTGTGCATCCACTAAGG+AGG | + | chr1_2:41940140-41940159 | Msa0070930:CDS | 50.0% | |
| CCTTGTGCATCCACTAAGGA+GGG | + | chr1_2:41940141-41940160 | Msa0070930:CDS | 50.0% | |
| TGGTCAACATCCCTCCTTAG+TGG | - | chr1_2:41940154-41940173 | None:intergenic | 50.0% | |
| CGCCCATTGTCGAAACAAAC+GGG | - | chr1_2:41941089-41941108 | None:intergenic | 50.0% | |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_2:41940144-41940163 | None:intergenic | 55.0% |
| ! | CCCTCCTTAGTGGATGCACA+AGG | - | chr1_2:41940144-41940163 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41940115 | 41941474 | 41940115 | ID=Msa0070930;Name=Msa0070930 |
| chr1_2 | mRNA | 41940115 | 41941474 | 41940115 | ID=Msa0070930-mRNA-1;Parent=Msa0070930;Name=Msa0070930-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|321 |
| chr1_2 | exon | 41940115 | 41940289 | 41940115 | ID=Msa0070930-mRNA-1:exon:12823;Parent=Msa0070930-mRNA-1 |
| chr1_2 | exon | 41940684 | 41941474 | 41940684 | ID=Msa0070930-mRNA-1:exon:12824;Parent=Msa0070930-mRNA-1 |
| chr1_2 | CDS | 41940115 | 41940289 | 41940115 | ID=Msa0070930-mRNA-1:cds;Parent=Msa0070930-mRNA-1 |
| chr1_2 | CDS | 41940684 | 41941474 | 41940684 | ID=Msa0070930-mRNA-1:cds;Parent=Msa0070930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
