Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119290 | B7FHS4 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 4.10e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa0119290 | 0.818959 | 1.492634e-52 | -8.615850e-47 |
| Msa0119290 | Msa0164470 | 0.993558 | 1.419593e-200 | -8.615850e-47 |
| Msa0119290 | Msa1024570 | 0.822651 | 2.113742e-53 | -8.615850e-47 |
| Msa0119290 | Msa1127880 | 0.805919 | 1.057963e-49 | -8.615850e-47 |
| Msa0119290 | Msa1165880 | 0.814712 | 1.339518e-51 | -8.615850e-47 |
| Msa0119290 | Msa1190770 | 0.803481 | 3.415354e-49 | -8.615850e-47 |
| Msa0119290 | Msa1197720 | 0.801526 | 8.636868e-49 | -8.615850e-47 |
| Msa0119290 | Msa1251410 | 0.807746 | 4.347194e-50 | -8.615850e-47 |
| Msa0119290 | Msa1352580 | 0.801781 | 7.656257e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119290 | MtrunA17_Chr1g0177061 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 7.89e-177 | 485 |
| Msa0119290 | MtrunA17_Chr4g0033931 | 60.000 | 230 | 82 | 6 | 3 | 232 | 20 | 239 | 1.12e-91 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119290 | AT3G44150.1 | 67.089 | 237 | 72 | 3 | 5 | 240 | 15 | 246 | 2.66e-116 | 332 |
| Msa0119290 | AT3G11800.1 | 61.411 | 241 | 86 | 4 | 7 | 240 | 6 | 246 | 1.97e-101 | 295 |
| Msa0119290 | AT2G15910.1 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 1.16e-83 | 254 |
| Msa0119290 | AT3G48630.1 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.54e-15 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACTAATTACACTAAT+TGG | 0.260828 | 1_3:+43072254 | None:intergenic |
| GGCTATATGGTTGCATTTGC+TGG | 0.262227 | 1_3:-43073021 | Msa0119290:CDS |
| ACAAATACATTTAGAATAGA+AGG | 0.280141 | 1_3:+43072386 | None:intergenic |
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1_3:-43072664 | Msa0119290:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1_3:-43072709 | Msa0119290:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1_3:+43072527 | None:intergenic |
| GAAGTGTGAAAACTGCTAAT+TGG | 0.330920 | 1_3:+43074553 | None:intergenic |
| CGTGATTGCCGCCGTTAGTA+TGG | 0.332639 | 1_3:+43074513 | None:intergenic |
| AATGTACACACCATCATTCT+AGG | 0.336765 | 1_3:+43072359 | None:intergenic |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1_3:-43072765 | Msa0119290:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1_3:+43074300 | None:intergenic |
| TTTCAAATGCATAAGTGAAT+TGG | 0.350973 | 1_3:+43074636 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1_3:-43072643 | Msa0119290:CDS |
| CCAGGACTCGTATGGCTATA+TGG | 0.380916 | 1_3:-43073034 | Msa0119290:intron |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1_3:+43074306 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1_3:+43074419 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1_3:+43072939 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1_3:-43074290 | Msa0119290:CDS |
| AAAATCAACAAAAGAACTAT+AGG | 0.400149 | 1_3:+43072469 | None:intergenic |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1_3:-43072622 | Msa0119290:CDS |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1_3:-43074410 | Msa0119290:CDS |
| AAATGTTATATTGATTATGC+TGG | 0.446823 | 1_3:-43072328 | Msa0119290:three_prime_UTR |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1_3:+43072650 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1_3:+43072545 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1_3:-43072788 | Msa0119290:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1_3:+43072651 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1_3:-43072783 | Msa0119290:CDS |
| AAATACTTTGTTTGTGTCGC+CGG | 0.480152 | 1_3:+43074465 | None:intergenic |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1_3:-43072704 | Msa0119290:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1_3:-43072588 | Msa0119290:CDS |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1_3:-43074415 | Msa0119290:CDS |
| AAAAGAACGAACCGCGACGA+AGG | 0.499053 | 1_3:+43074231 | None:intergenic |
| TATATTGATTATGCTGGATA+CGG | 0.504888 | 1_3:-43072322 | Msa0119290:three_prime_UTR |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1_3:-43074395 | Msa0119290:CDS |
| CAGTTAAATAAGAATTCATA+AGG | 0.511766 | 1_3:+43072298 | None:intergenic |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1_3:+43074274 | None:intergenic |
| CATACTAACGGCGGCAATCA+CGG | 0.523509 | 1_3:-43074512 | Msa0119290:CDS |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1_3:-43072754 | Msa0119290:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1_3:-43072753 | Msa0119290:CDS |
| CATTTAGAATAGAAGGGAGC+AGG | 0.532748 | 1_3:+43072393 | None:intergenic |
| TCGTTGTTCCAGGACTCGTA+TGG | 0.538029 | 1_3:-43073042 | Msa0119290:intron |
| GAGCCATTTGCAATAAAAGC+AGG | 0.539452 | 1_3:+43072973 | None:intergenic |
| CAAATACATTTAGAATAGAA+GGG | 0.544289 | 1_3:+43072387 | None:intergenic |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1_3:-43072787 | Msa0119290:CDS |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1_3:-43073017 | Msa0119290:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1_3:+43074439 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1_3:+43072670 | None:intergenic |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1_3:-43072550 | Msa0119290:CDS |
| TTAGAATAGAAGGGAGCAGG+TGG | 0.586991 | 1_3:+43072396 | None:intergenic |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1_3:+43072587 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1_3:+43072978 | None:intergenic |
| TAGTATGGTGATAACCGCCA+TGG | 0.618677 | 1_3:+43074528 | None:intergenic |
| ATTTGTGAAACCTAGAATGA+TGG | 0.620825 | 1_3:-43072369 | Msa0119290:three_prime_UTR |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1_3:-43072656 | Msa0119290:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1_3:+43072976 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1_3:+43072551 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1_3:-43074416 | Msa0119290:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1_3:-43074484 | Msa0119290:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1_3:+43074411 | None:intergenic |
| GGCGGTTATCACCATACTAA+CGG | 0.662813 | 1_3:-43074524 | Msa0119290:CDS |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1_3:+43072977 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1_3:-43074427 | Msa0119290:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1_3:-43074242 | Msa0119290:intron |
| TAGAATAGAAGGGAGCAGGT+GGG | 0.687668 | 1_3:+43072397 | None:intergenic |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1_3:+43074331 | None:intergenic |
| ACTAACGGCGGCAATCACGG+CGG | 0.742815 | 1_3:-43074509 | Msa0119290:CDS |
| GGTTATCACCATACTAACGG+CGG | 0.773209 | 1_3:-43074521 | Msa0119290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAATTGAATTCAATT+AGG | - | chr1_3:43072753-43072772 | Msa0119290:CDS | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | - | chr1_3:43072754-43072773 | Msa0119290:CDS | 10.0% |
| !! | TATAAAATGTTATCAAATAA+TGG | - | chr1_3:43073351-43073370 | Msa0119290:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | - | chr1_3:43073441-43073460 | Msa0119290:intron | 10.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | - | chr1_3:43072822-43072841 | Msa0119290:intron | 15.0% |
| !! | TGAGTTATTTAATTGAAAAT+AGG | - | chr1_3:43073474-43073493 | Msa0119290:intron | 15.0% |
| !!! | ATTTTCGAGTATATCATATA+TGG | - | chr1_3:43072999-43073018 | Msa0119290:CDS | 20.0% |
| !! | ATTTAATTGAAAATAGGAGT+TGG | - | chr1_3:43073480-43073499 | Msa0119290:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+GGG | - | chr1_3:43073481-43073500 | Msa0119290:intron | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | - | chr1_3:43073577-43073596 | Msa0119290:intron | 20.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | + | chr1_3:43073647-43073666 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | + | chr1_3:43073726-43073745 | None:intergenic | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | + | chr1_3:43074005-43074024 | None:intergenic | 20.0% |
| !! | ATTAGAAAAACTTATCATAC+TGG | + | chr1_3:43074421-43074440 | None:intergenic | 20.0% |
| !! | AAAATCAACAAAAGAACTAT+AGG | + | chr1_3:43074446-43074465 | None:intergenic | 20.0% |
| !!! | CAAATACATTTAGAATAGAA+GGG | + | chr1_3:43074528-43074547 | None:intergenic | 20.0% |
| !!! | ACAAATACATTTAGAATAGA+AGG | + | chr1_3:43074529-43074548 | None:intergenic | 20.0% |
| !!! | AAATGTTATATTGATTATGC+TGG | - | chr1_3:43074584-43074603 | Msa0119290:five_prime_UTR | 20.0% |
| !! | CAGTTAAATAAGAATTCATA+AGG | + | chr1_3:43074617-43074636 | None:intergenic | 20.0% |
| !! | TTACACTTCAGTAAAAAAAA+AGG | + | chr1_3:43074679-43074698 | None:intergenic | 20.0% |
| ! | TTTCAAATGCATAAGTGAAT+TGG | + | chr1_3:43072279-43072298 | None:intergenic | 25.0% |
| !! | TTGAAAAACTTTTGTTAACG+TGG | - | chr1_3:43072293-43072312 | Msa0119290:three_prime_UTR | 25.0% |
| !!! | ATTGGTTTGATTTTGAAGTT+TGG | + | chr1_3:43072344-43072363 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | + | chr1_3:43072709-43072728 | None:intergenic | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | + | chr1_3:43072856-43072875 | None:intergenic | 25.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | - | chr1_3:43072857-43072876 | Msa0119290:intron | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | - | chr1_3:43072858-43072877 | Msa0119290:intron | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | + | chr1_3:43072862-43072881 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | + | chr1_3:43072863-43072882 | None:intergenic | 25.0% |
| ! | GTAATTATAAGTGTCAATGT+CGG | + | chr1_3:43073225-43073244 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAGCAATGA+CGG | - | chr1_3:43073273-43073292 | Msa0119290:intron | 25.0% |
| ! | TTAATTGAAAATAGGAGTTG+GGG | - | chr1_3:43073482-43073501 | Msa0119290:intron | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | + | chr1_3:43073712-43073731 | None:intergenic | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | - | chr1_3:43073834-43073853 | Msa0119290:intron | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | - | chr1_3:43073835-43073854 | Msa0119290:intron | 25.0% |
| ! | ATGATTACAACTACAACAAA+TGG | + | chr1_3:43074075-43074094 | None:intergenic | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | + | chr1_3:43074388-43074407 | None:intergenic | 25.0% |
| !! | TATATTGATTATGCTGGATA+CGG | - | chr1_3:43074590-43074609 | Msa0119290:five_prime_UTR | 25.0% |
| ! | AAAGGACTAATTACACTAAT+TGG | + | chr1_3:43074661-43074680 | None:intergenic | 25.0% |
| AAACAAAGAGATCTGAGAAT+TGG | + | chr1_3:43072615-43072634 | None:intergenic | 30.0% | |
| ATGAAGTGTAATCTTTGAAC+TGG | - | chr1_3:43072909-43072928 | Msa0119290:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | - | chr1_3:43072936-43072955 | Msa0119290:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | - | chr1_3:43073021-43073040 | Msa0119290:CDS | 30.0% |
| TTGTTAAATAGAAGCTAGAG+TGG | - | chr1_3:43073080-43073099 | Msa0119290:intron | 30.0% | |
| ATTATAGCACTATTTCGTAG+AGG | - | chr1_3:43073384-43073403 | Msa0119290:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | - | chr1_3:43073534-43073553 | Msa0119290:intron | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | - | chr1_3:43073535-43073554 | Msa0119290:intron | 30.0% | |
| !!! | ATTCTTATTTTCCACTTGCT+AGG | - | chr1_3:43073676-43073695 | Msa0119290:intron | 30.0% |
| AAAGCAAAAATTGACGAAAC+TGG | + | chr1_3:43073809-43073828 | None:intergenic | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | - | chr1_3:43074125-43074144 | Msa0119290:intron | 30.0% | |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | - | chr1_3:43074158-43074177 | Msa0119290:intron | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | - | chr1_3:43074159-43074178 | Msa0119290:intron | 30.0% |
| ATTTGTGAAACCTAGAATGA+TGG | - | chr1_3:43074543-43074562 | Msa0119290:exon | 30.0% | |
| GAAGTGTGAAAACTGCTAAT+TGG | + | chr1_3:43072362-43072381 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | + | chr1_3:43072450-43072469 | None:intergenic | 35.0% |
| AGAGATCTGAGAATTGGAAT+TGG | + | chr1_3:43072609-43072628 | None:intergenic | 35.0% | |
| ! | GATCTCTTTGTTTAGACCTA+AGG | - | chr1_3:43072622-43072641 | Msa0119290:CDS | 35.0% |
| TCCAGTAAAAATGAGGTTTC+CGG | + | chr1_3:43072958-43072977 | None:intergenic | 35.0% | |
| !! | ACCTCATTTTTACTGGACAT+TGG | - | chr1_3:43072961-43072980 | Msa0119290:CDS | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | - | chr1_3:43072962-43072981 | Msa0119290:CDS | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | - | chr1_3:43072974-43072993 | Msa0119290:CDS | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | - | chr1_3:43073020-43073039 | Msa0119290:CDS | 35.0% |
| !! | TTGCAGATAGTGGATTGTTA+AGG | + | chr1_3:43073412-43073431 | None:intergenic | 35.0% |
| AAAATAGGAGTTGGGGAATT+TGG | - | chr1_3:43073489-43073508 | Msa0119290:intron | 35.0% | |
| !! | TATTTTCCACTTGCTAGGAA+AGG | - | chr1_3:43073681-43073700 | Msa0119290:intron | 35.0% |
| AAACCTTTCGTGCTCAATTA+CGG | + | chr1_3:43073752-43073771 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | + | chr1_3:43073937-43073956 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | + | chr1_3:43073938-43073957 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | + | chr1_3:43074107-43074126 | None:intergenic | 35.0% | |
| ! | ATTTGAAATCTTACTCCTGC+AGG | - | chr1_3:43074106-43074125 | Msa0119290:intron | 35.0% |
| TCTTAAATTCAAGAACCTGC+AGG | + | chr1_3:43074124-43074143 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | - | chr1_3:43074124-43074143 | Msa0119290:intron | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | - | chr1_3:43074129-43074148 | Msa0119290:intron | 35.0% | |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | + | chr1_3:43074196-43074215 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | + | chr1_3:43074197-43074216 | None:intergenic | 35.0% |
| TCAAAAGCTGTCTGTCTTAA+CGG | - | chr1_3:43074203-43074222 | Msa0119290:intron | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | - | chr1_3:43074290-43074309 | Msa0119290:CDS | 35.0% | |
| AATGTACACACCATCATTCT+AGG | + | chr1_3:43074556-43074575 | None:intergenic | 35.0% | |
| ! | CAGTTTTCACACTTCTTCCA+TGG | - | chr1_3:43072367-43072386 | Msa0119290:three_prime_UTR | 40.0% |
| ! | TTTTCACACTTCTTCCATGG+CGG | - | chr1_3:43072370-43072389 | Msa0119290:three_prime_UTR | 40.0% |
| TAATTCTTCTTCCTTCGTCG+CGG | - | chr1_3:43072670-43072689 | Msa0119290:CDS | 40.0% | |
| !! | TCCGGAAACCTCATTTTTAC+TGG | - | chr1_3:43072954-43072973 | Msa0119290:CDS | 40.0% |
| CCCAATGTCCAGTAAAAATG+AGG | + | chr1_3:43072965-43072984 | None:intergenic | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | + | chr1_3:43073113-43073132 | None:intergenic | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_3:43073164-43073183 | Msa0119290:intron | 40.0% | |
| ! | TCTTTGGATTAGACTTGTCC+CGG | - | chr1_3:43073180-43073199 | Msa0119290:intron | 40.0% |
| GTGTTGTCAATTGCAGATAG+TGG | + | chr1_3:43073422-43073441 | None:intergenic | 40.0% | |
| ! | ATATGGTTGCATTTGCTGGT+CGG | - | chr1_3:43073895-43073914 | Msa0119290:intron | 40.0% |
| CCATTTGCAATAAAAGCAGG+AGG | + | chr1_3:43073939-43073958 | None:intergenic | 40.0% | |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | - | chr1_3:43073936-43073955 | Msa0119290:intron | 40.0% |
| GAGCCATTTGCAATAAAAGC+AGG | + | chr1_3:43073942-43073961 | None:intergenic | 40.0% | |
| ! | TGACCAGTTTTACTCTCGTA+AGG | - | chr1_3:43073970-43073989 | Msa0119290:intron | 40.0% |
| TCTCCTTACGAGAGTAAAAC+TGG | + | chr1_3:43073976-43073995 | None:intergenic | 40.0% | |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | - | chr1_3:43073984-43074003 | Msa0119290:intron | 40.0% |
| ACCTATCAGCTCTTAACTCT+TGG | - | chr1_3:43074324-43074343 | Msa0119290:CDS | 40.0% | |
| ACCAAGAGTTAAGAGCTGAT+AGG | + | chr1_3:43074328-43074347 | None:intergenic | 40.0% | |
| ! | CATTTAGAATAGAAGGGAGC+AGG | + | chr1_3:43074522-43074541 | None:intergenic | 40.0% |
| TAGTATGGTGATAACCGCCA+TGG | + | chr1_3:43072387-43072406 | None:intergenic | 45.0% | |
| GGCGGTTATCACCATACTAA+CGG | - | chr1_3:43072388-43072407 | Msa0119290:three_prime_UTR | 45.0% | |
| GGTTATCACCATACTAACGG+CGG | - | chr1_3:43072391-43072410 | Msa0119290:three_prime_UTR | 45.0% | |
| !! | TTTCTAGCTTCAGCATACGC+CGG | - | chr1_3:43072428-43072447 | Msa0119290:three_prime_UTR | 45.0% |
| ! | AGCGAGAGTCTAGAATCACA+CGG | + | chr1_3:43072584-43072603 | None:intergenic | 45.0% |
| AACGAGATCTCATCGACCTT+AGG | + | chr1_3:43072641-43072660 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | - | chr1_3:43073111-43073130 | Msa0119290:intron | 45.0% | |
| TGTCCGTATCCGTGCTAAAT+AGG | - | chr1_3:43073310-43073329 | Msa0119290:intron | 45.0% | |
| CGTCCTATTTAGCACGGATA+CGG | + | chr1_3:43073316-43073335 | None:intergenic | 45.0% | |
| GTATCGCGTCCTATTTAGCA+CGG | + | chr1_3:43073322-43073341 | None:intergenic | 45.0% | |
| GTTCCGTAATTGAGCACGAA+AGG | - | chr1_3:43073746-43073765 | Msa0119290:intron | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | - | chr1_3:43073891-43073910 | Msa0119290:intron | 45.0% | |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | - | chr1_3:43074147-43074166 | Msa0119290:intron | 45.0% |
| TGGGTCTTGCAACTAGAAGT+TGG | + | chr1_3:43074245-43074264 | None:intergenic | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | - | chr1_3:43074248-43074267 | Msa0119290:CDS | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | + | chr1_3:43074264-43074283 | None:intergenic | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | + | chr1_3:43074265-43074284 | None:intergenic | 45.0% | |
| TAGAATAGAAGGGAGCAGGT+GGG | + | chr1_3:43074518-43074537 | None:intergenic | 45.0% | |
| TTAGAATAGAAGGGAGCAGG+TGG | + | chr1_3:43074519-43074538 | None:intergenic | 45.0% | |
| CATACTAACGGCGGCAATCA+CGG | - | chr1_3:43072400-43072419 | Msa0119290:three_prime_UTR | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | - | chr1_3:43072497-43072516 | Msa0119290:CDS | 50.0% |
| CAATCCCAACGTGAATCCGT+CGG | + | chr1_3:43072504-43072523 | None:intergenic | 50.0% | |
| AAAAGAACGAACCGCGACGA+AGG | + | chr1_3:43072684-43072703 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | - | chr1_3:43073104-43073123 | Msa0119290:intron | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | - | chr1_3:43073186-43073205 | Msa0119290:intron | 50.0% | |
| TTTAGCACGGATACGGACAC+CGG | + | chr1_3:43073309-43073328 | None:intergenic | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | + | chr1_3:43073690-43073709 | None:intergenic | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | - | chr1_3:43073860-43073879 | Msa0119290:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | - | chr1_3:43073870-43073889 | Msa0119290:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | + | chr1_3:43073881-43073900 | None:intergenic | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | - | chr1_3:43073878-43073897 | Msa0119290:intron | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | - | chr1_3:43074208-43074227 | Msa0119290:intron | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | - | chr1_3:43074256-43074275 | Msa0119290:CDS | 50.0% | |
| ! | GGAACTGTGGATTGCAGCTT+AGG | - | chr1_3:43074269-43074288 | Msa0119290:CDS | 50.0% |
| CTTCGCCAGTATTCGCTCTA+CGG | - | chr1_3:43074362-43074381 | Msa0119290:CDS | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | + | chr1_3:43074370-43074389 | None:intergenic | 50.0% | |
| CGTGATTGCCGCCGTTAGTA+TGG | + | chr1_3:43072402-43072421 | None:intergenic | 55.0% | |
| ACGTGAATCCGTCGGATCTC+TGG | + | chr1_3:43072496-43072515 | None:intergenic | 55.0% | |
| ! | GAGATCCGACGGATTCACGT+TGG | - | chr1_3:43072496-43072515 | Msa0119290:CDS | 55.0% |
| ! | CGACGGATTCACGTTGGGAT+TGG | - | chr1_3:43072502-43072521 | Msa0119290:CDS | 55.0% |
| TCGCGTCAGCGTCACAACAA+CGG | + | chr1_3:43073142-43073161 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | + | chr1_3:43074364-43074383 | None:intergenic | 55.0% | |
| ACTAACGGCGGCAATCACGG+CGG | - | chr1_3:43072403-43072422 | Msa0119290:three_prime_UTR | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | + | chr1_3:43072476-43072495 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | - | chr1_3:43072485-43072504 | Msa0119290:exon | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | - | chr1_3:43072517-43072536 | Msa0119290:CDS | 60.0% |
| ACACGACACGTGTCCGACAC+CGG | + | chr1_3:43073202-43073221 | None:intergenic | 60.0% | |
| CAATGACGGCGTGTCGTGTC+CGG | - | chr1_3:43073287-43073306 | Msa0119290:intron | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr1_3:43073201-43073220 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 43072227 | 43074707 | 43072227 | ID=Msa0119290;Name=Msa0119290 |
| chr1_3 | mRNA | 43072227 | 43074707 | 43072227 | ID=Msa0119290-mRNA-1;Parent=Msa0119290;Name=Msa0119290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|3|268|240 |
| chr1_3 | exon | 43072227 | 43072806 | 43072227 | ID=Msa0119290-mRNA-1:exon:12938;Parent=Msa0119290-mRNA-1 |
| chr1_3 | exon | 43072948 | 43073052 | 43072948 | ID=Msa0119290-mRNA-1:exon:12937;Parent=Msa0119290-mRNA-1 |
| chr1_3 | exon | 43074243 | 43074707 | 43074243 | ID=Msa0119290-mRNA-1:exon:12936;Parent=Msa0119290-mRNA-1 |
| chr1_3 | five_prime_UTR | 43074549 | 43074707 | 43074549 | ID=Msa0119290-mRNA-1:five_prime_utr;Parent=Msa0119290-mRNA-1 |
| chr1_3 | CDS | 43074243 | 43074548 | 43074243 | ID=Msa0119290-mRNA-1:cds;Parent=Msa0119290-mRNA-1 |
| chr1_3 | CDS | 43072948 | 43073052 | 43072948 | ID=Msa0119290-mRNA-1:cds;Parent=Msa0119290-mRNA-1 |
| chr1_3 | CDS | 43072495 | 43072806 | 43072495 | ID=Msa0119290-mRNA-1:cds;Parent=Msa0119290-mRNA-1 |
| chr1_3 | three_prime_UTR | 43072227 | 43072494 | 43072227 | ID=Msa0119290-mRNA-1:three_prime_utr;Parent=Msa0119290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
