Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164470 | XP_003590316.1 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 8.58e-173 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164470 | B7FHS4 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 4.10e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa0164470 | 0.814571 | 1.439397e-51 | -8.615850e-47 |
| Msa0119290 | Msa0164470 | 0.993558 | 1.419593e-200 | -8.615850e-47 |
| Msa0164470 | Msa1024570 | 0.826089 | 3.284337e-54 | -8.615850e-47 |
| Msa0164470 | Msa1127880 | 0.812293 | 4.560067e-51 | -8.615850e-47 |
| Msa0164470 | Msa1165880 | 0.828861 | 7.103451e-55 | -8.615850e-47 |
| Msa0164470 | Msa1190770 | 0.810393 | 1.178848e-50 | -8.615850e-47 |
| Msa0164470 | Msa1197720 | 0.812370 | 4.388111e-51 | -8.615850e-47 |
| Msa0164470 | Msa1245070 | 0.806365 | 8.523428e-50 | -8.615850e-47 |
| Msa0164470 | Msa1251410 | 0.813793 | 2.138143e-51 | -8.615850e-47 |
| Msa0164470 | Msa1352580 | 0.802760 | 4.815403e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164470 | MtrunA17_Chr1g0177061 | 98.333 | 240 | 4 | 0 | 1 | 240 | 1 | 240 | 7.89e-177 | 485 |
| Msa0164470 | MtrunA17_Chr4g0033931 | 60.000 | 230 | 82 | 6 | 3 | 232 | 20 | 239 | 1.12e-91 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164470 | AT3G44150.1 | 67.089 | 237 | 72 | 3 | 5 | 240 | 15 | 246 | 2.66e-116 | 332 |
| Msa0164470 | AT3G11800.1 | 61.411 | 241 | 86 | 4 | 7 | 240 | 6 | 246 | 1.97e-101 | 295 |
| Msa0164470 | AT2G15910.1 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 1.16e-83 | 254 |
| Msa0164470 | AT3G48630.1 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.54e-15 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACTAATTACACTAAT+TGG | 0.260828 | 1_4:+43963566 | None:intergenic |
| GGCTATATGGTTGCATTTGC+TGG | 0.262227 | 1_4:-43964333 | Msa0164470:CDS |
| ACAAATACATTTAGAATAGA+AGG | 0.280141 | 1_4:+43963698 | None:intergenic |
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1_4:-43963976 | Msa0164470:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1_4:-43964021 | Msa0164470:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1_4:+43963839 | None:intergenic |
| GAAGTGTGAAAACTGCTAAT+TGG | 0.330920 | 1_4:+43965865 | None:intergenic |
| CGTGATTGCCGCCGTTAGTA+TGG | 0.332639 | 1_4:+43965825 | None:intergenic |
| AATGTACACACCATCATTCT+AGG | 0.336765 | 1_4:+43963671 | None:intergenic |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1_4:-43964077 | Msa0164470:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1_4:+43965612 | None:intergenic |
| TTTCAAATGCATAAGTGAAT+TGG | 0.350973 | 1_4:+43965948 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1_4:-43963955 | Msa0164470:CDS |
| CCAGGACTCGTATGGCTATA+TGG | 0.380916 | 1_4:-43964346 | Msa0164470:intron |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1_4:+43965618 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1_4:+43965731 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1_4:+43964251 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1_4:-43965602 | Msa0164470:CDS |
| AAAATCAACAAAAGAACTAT+AGG | 0.400149 | 1_4:+43963781 | None:intergenic |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1_4:-43963934 | Msa0164470:CDS |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1_4:-43965722 | Msa0164470:CDS |
| AAATGTTATATTGATTATGC+TGG | 0.446823 | 1_4:-43963640 | Msa0164470:three_prime_UTR |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1_4:+43963962 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1_4:+43963857 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1_4:-43964100 | Msa0164470:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1_4:+43963963 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1_4:-43964095 | Msa0164470:CDS |
| AAATACTTTGTTTGTGTCGC+CGG | 0.480152 | 1_4:+43965777 | None:intergenic |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1_4:-43964016 | Msa0164470:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1_4:-43963900 | Msa0164470:CDS |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1_4:-43965727 | Msa0164470:CDS |
| AAAAGAACGAACCGCGACGA+AGG | 0.499053 | 1_4:+43965543 | None:intergenic |
| TATATTGATTATGCTGGATA+CGG | 0.504888 | 1_4:-43963634 | Msa0164470:three_prime_UTR |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1_4:-43965707 | Msa0164470:CDS |
| CAGTTAAATAAGAATTCATA+AGG | 0.511766 | 1_4:+43963610 | None:intergenic |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1_4:+43965586 | None:intergenic |
| CATACTAACGGCGGCAATCA+CGG | 0.523509 | 1_4:-43965824 | Msa0164470:CDS |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1_4:-43964066 | Msa0164470:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1_4:-43964065 | Msa0164470:CDS |
| CATTTAGAATAGAAGGGAGC+AGG | 0.532748 | 1_4:+43963705 | None:intergenic |
| TCGTTGTTCCAGGACTCGTA+TGG | 0.538029 | 1_4:-43964354 | Msa0164470:intron |
| GAGCCATTTGCAATAAAAGC+AGG | 0.539452 | 1_4:+43964285 | None:intergenic |
| CAAATACATTTAGAATAGAA+GGG | 0.544289 | 1_4:+43963699 | None:intergenic |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1_4:-43964099 | Msa0164470:CDS |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1_4:-43964329 | Msa0164470:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1_4:+43965751 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1_4:+43963982 | None:intergenic |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1_4:-43963862 | Msa0164470:CDS |
| TTAGAATAGAAGGGAGCAGG+TGG | 0.586991 | 1_4:+43963708 | None:intergenic |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1_4:+43963899 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1_4:+43964290 | None:intergenic |
| TAGTATGGTGATAACCGCCA+TGG | 0.618677 | 1_4:+43965840 | None:intergenic |
| ATTTGTGAAACCTAGAATGA+TGG | 0.620825 | 1_4:-43963681 | Msa0164470:three_prime_UTR |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1_4:-43963968 | Msa0164470:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1_4:+43964288 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1_4:+43963863 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1_4:-43965728 | Msa0164470:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1_4:-43965796 | Msa0164470:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1_4:+43965723 | None:intergenic |
| GGCGGTTATCACCATACTAA+CGG | 0.662813 | 1_4:-43965836 | Msa0164470:CDS |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1_4:+43964289 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1_4:-43965739 | Msa0164470:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1_4:-43965554 | Msa0164470:intron |
| TAGAATAGAAGGGAGCAGGT+GGG | 0.687668 | 1_4:+43963709 | None:intergenic |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1_4:+43965643 | None:intergenic |
| ACTAACGGCGGCAATCACGG+CGG | 0.742815 | 1_4:-43965821 | Msa0164470:CDS |
| GGTTATCACCATACTAACGG+CGG | 0.773209 | 1_4:-43965833 | Msa0164470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAATTGAATTCAATT+AGG | - | chr1_4:43964065-43964084 | Msa0164470:CDS | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | - | chr1_4:43964066-43964085 | Msa0164470:CDS | 10.0% |
| !! | TATAAAATGTTATCAAATAA+TGG | - | chr1_4:43964663-43964682 | Msa0164470:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | - | chr1_4:43964753-43964772 | Msa0164470:intron | 10.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | - | chr1_4:43964134-43964153 | Msa0164470:intron | 15.0% |
| !! | TGAGTTATTTAATTGAAAAT+AGG | - | chr1_4:43964786-43964805 | Msa0164470:intron | 15.0% |
| !!! | ATTTTCGAGTATATCATATA+TGG | - | chr1_4:43964311-43964330 | Msa0164470:CDS | 20.0% |
| !! | ATTTAATTGAAAATAGGAGT+TGG | - | chr1_4:43964792-43964811 | Msa0164470:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+GGG | - | chr1_4:43964793-43964812 | Msa0164470:intron | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | - | chr1_4:43964889-43964908 | Msa0164470:intron | 20.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | + | chr1_4:43964959-43964978 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | + | chr1_4:43965038-43965057 | None:intergenic | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | + | chr1_4:43965317-43965336 | None:intergenic | 20.0% |
| !! | ATTAGAAAAACTTATCATAC+TGG | + | chr1_4:43965733-43965752 | None:intergenic | 20.0% |
| !! | AAAATCAACAAAAGAACTAT+AGG | + | chr1_4:43965758-43965777 | None:intergenic | 20.0% |
| !!! | CAAATACATTTAGAATAGAA+GGG | + | chr1_4:43965840-43965859 | None:intergenic | 20.0% |
| !!! | ACAAATACATTTAGAATAGA+AGG | + | chr1_4:43965841-43965860 | None:intergenic | 20.0% |
| !!! | AAATGTTATATTGATTATGC+TGG | - | chr1_4:43965896-43965915 | Msa0164470:five_prime_UTR | 20.0% |
| !! | CAGTTAAATAAGAATTCATA+AGG | + | chr1_4:43965929-43965948 | None:intergenic | 20.0% |
| !! | TTACACTTCAGTAAAAAAAA+AGG | + | chr1_4:43965991-43966010 | None:intergenic | 20.0% |
| ! | TTTCAAATGCATAAGTGAAT+TGG | + | chr1_4:43963591-43963610 | None:intergenic | 25.0% |
| !! | TTGAAAAACTTTTGTTAACG+TGG | - | chr1_4:43963605-43963624 | Msa0164470:three_prime_UTR | 25.0% |
| !!! | ATTGGTTTGATTTTGAAGTT+TGG | + | chr1_4:43963656-43963675 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | + | chr1_4:43964021-43964040 | None:intergenic | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | + | chr1_4:43964168-43964187 | None:intergenic | 25.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | - | chr1_4:43964169-43964188 | Msa0164470:intron | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | - | chr1_4:43964170-43964189 | Msa0164470:intron | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | + | chr1_4:43964174-43964193 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | + | chr1_4:43964175-43964194 | None:intergenic | 25.0% |
| ! | GTAATTATAAGTGTCAATGT+CGG | + | chr1_4:43964537-43964556 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAGCAATGA+CGG | - | chr1_4:43964585-43964604 | Msa0164470:intron | 25.0% |
| ! | TTAATTGAAAATAGGAGTTG+GGG | - | chr1_4:43964794-43964813 | Msa0164470:intron | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | + | chr1_4:43965024-43965043 | None:intergenic | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | - | chr1_4:43965146-43965165 | Msa0164470:intron | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | - | chr1_4:43965147-43965166 | Msa0164470:intron | 25.0% |
| ! | ATGATTACAACTACAACAAA+TGG | + | chr1_4:43965387-43965406 | None:intergenic | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | + | chr1_4:43965700-43965719 | None:intergenic | 25.0% |
| !! | TATATTGATTATGCTGGATA+CGG | - | chr1_4:43965902-43965921 | Msa0164470:five_prime_UTR | 25.0% |
| ! | AAAGGACTAATTACACTAAT+TGG | + | chr1_4:43965973-43965992 | None:intergenic | 25.0% |
| AAACAAAGAGATCTGAGAAT+TGG | + | chr1_4:43963927-43963946 | None:intergenic | 30.0% | |
| ATGAAGTGTAATCTTTGAAC+TGG | - | chr1_4:43964221-43964240 | Msa0164470:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | - | chr1_4:43964248-43964267 | Msa0164470:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | - | chr1_4:43964333-43964352 | Msa0164470:CDS | 30.0% |
| TTGTTAAATAGAAGCTAGAG+TGG | - | chr1_4:43964392-43964411 | Msa0164470:intron | 30.0% | |
| ATTATAGCACTATTTCGTAG+AGG | - | chr1_4:43964696-43964715 | Msa0164470:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | - | chr1_4:43964846-43964865 | Msa0164470:intron | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | - | chr1_4:43964847-43964866 | Msa0164470:intron | 30.0% | |
| !!! | ATTCTTATTTTCCACTTGCT+AGG | - | chr1_4:43964988-43965007 | Msa0164470:intron | 30.0% |
| AAAGCAAAAATTGACGAAAC+TGG | + | chr1_4:43965121-43965140 | None:intergenic | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | - | chr1_4:43965437-43965456 | Msa0164470:intron | 30.0% | |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | - | chr1_4:43965470-43965489 | Msa0164470:intron | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | - | chr1_4:43965471-43965490 | Msa0164470:intron | 30.0% |
| ATTTGTGAAACCTAGAATGA+TGG | - | chr1_4:43965855-43965874 | Msa0164470:exon | 30.0% | |
| GAAGTGTGAAAACTGCTAAT+TGG | + | chr1_4:43963674-43963693 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | + | chr1_4:43963762-43963781 | None:intergenic | 35.0% |
| AGAGATCTGAGAATTGGAAT+TGG | + | chr1_4:43963921-43963940 | None:intergenic | 35.0% | |
| ! | GATCTCTTTGTTTAGACCTA+AGG | - | chr1_4:43963934-43963953 | Msa0164470:CDS | 35.0% |
| TCCAGTAAAAATGAGGTTTC+CGG | + | chr1_4:43964270-43964289 | None:intergenic | 35.0% | |
| !! | ACCTCATTTTTACTGGACAT+TGG | - | chr1_4:43964273-43964292 | Msa0164470:CDS | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | - | chr1_4:43964274-43964293 | Msa0164470:CDS | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | - | chr1_4:43964286-43964305 | Msa0164470:CDS | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | - | chr1_4:43964332-43964351 | Msa0164470:CDS | 35.0% |
| !! | TTGCAGATAGTGGATTGTTA+AGG | + | chr1_4:43964724-43964743 | None:intergenic | 35.0% |
| AAAATAGGAGTTGGGGAATT+TGG | - | chr1_4:43964801-43964820 | Msa0164470:intron | 35.0% | |
| !! | TATTTTCCACTTGCTAGGAA+AGG | - | chr1_4:43964993-43965012 | Msa0164470:intron | 35.0% |
| AAACCTTTCGTGCTCAATTA+CGG | + | chr1_4:43965064-43965083 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | + | chr1_4:43965249-43965268 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | + | chr1_4:43965250-43965269 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | + | chr1_4:43965419-43965438 | None:intergenic | 35.0% | |
| ! | ATTTGAAATCTTACTCCTGC+AGG | - | chr1_4:43965418-43965437 | Msa0164470:intron | 35.0% |
| TCTTAAATTCAAGAACCTGC+AGG | + | chr1_4:43965436-43965455 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | - | chr1_4:43965436-43965455 | Msa0164470:intron | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | - | chr1_4:43965441-43965460 | Msa0164470:intron | 35.0% | |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | + | chr1_4:43965508-43965527 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | + | chr1_4:43965509-43965528 | None:intergenic | 35.0% |
| TCAAAAGCTGTCTGTCTTAA+CGG | - | chr1_4:43965515-43965534 | Msa0164470:intron | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | - | chr1_4:43965602-43965621 | Msa0164470:CDS | 35.0% | |
| AATGTACACACCATCATTCT+AGG | + | chr1_4:43965868-43965887 | None:intergenic | 35.0% | |
| ! | CAGTTTTCACACTTCTTCCA+TGG | - | chr1_4:43963679-43963698 | Msa0164470:three_prime_UTR | 40.0% |
| ! | TTTTCACACTTCTTCCATGG+CGG | - | chr1_4:43963682-43963701 | Msa0164470:three_prime_UTR | 40.0% |
| TAATTCTTCTTCCTTCGTCG+CGG | - | chr1_4:43963982-43964001 | Msa0164470:CDS | 40.0% | |
| !! | TCCGGAAACCTCATTTTTAC+TGG | - | chr1_4:43964266-43964285 | Msa0164470:CDS | 40.0% |
| CCCAATGTCCAGTAAAAATG+AGG | + | chr1_4:43964277-43964296 | None:intergenic | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | + | chr1_4:43964425-43964444 | None:intergenic | 40.0% | |
| TATGAAGCACAGACACTCTT+TGG | - | chr1_4:43964476-43964495 | Msa0164470:intron | 40.0% | |
| ! | TCTTTGGATTAGACTTGTCC+CGG | - | chr1_4:43964492-43964511 | Msa0164470:intron | 40.0% |
| GTGTTGTCAATTGCAGATAG+TGG | + | chr1_4:43964734-43964753 | None:intergenic | 40.0% | |
| ! | ATATGGTTGCATTTGCTGGT+CGG | - | chr1_4:43965207-43965226 | Msa0164470:intron | 40.0% |
| CCATTTGCAATAAAAGCAGG+AGG | + | chr1_4:43965251-43965270 | None:intergenic | 40.0% | |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | - | chr1_4:43965248-43965267 | Msa0164470:intron | 40.0% |
| GAGCCATTTGCAATAAAAGC+AGG | + | chr1_4:43965254-43965273 | None:intergenic | 40.0% | |
| ! | TGACCAGTTTTACTCTCGTA+AGG | - | chr1_4:43965282-43965301 | Msa0164470:intron | 40.0% |
| TCTCCTTACGAGAGTAAAAC+TGG | + | chr1_4:43965288-43965307 | None:intergenic | 40.0% | |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | - | chr1_4:43965296-43965315 | Msa0164470:intron | 40.0% |
| ACCTATCAGCTCTTAACTCT+TGG | - | chr1_4:43965636-43965655 | Msa0164470:CDS | 40.0% | |
| ACCAAGAGTTAAGAGCTGAT+AGG | + | chr1_4:43965640-43965659 | None:intergenic | 40.0% | |
| ! | CATTTAGAATAGAAGGGAGC+AGG | + | chr1_4:43965834-43965853 | None:intergenic | 40.0% |
| TAGTATGGTGATAACCGCCA+TGG | + | chr1_4:43963699-43963718 | None:intergenic | 45.0% | |
| GGCGGTTATCACCATACTAA+CGG | - | chr1_4:43963700-43963719 | Msa0164470:three_prime_UTR | 45.0% | |
| GGTTATCACCATACTAACGG+CGG | - | chr1_4:43963703-43963722 | Msa0164470:three_prime_UTR | 45.0% | |
| !! | TTTCTAGCTTCAGCATACGC+CGG | - | chr1_4:43963740-43963759 | Msa0164470:three_prime_UTR | 45.0% |
| ! | AGCGAGAGTCTAGAATCACA+CGG | + | chr1_4:43963896-43963915 | None:intergenic | 45.0% |
| AACGAGATCTCATCGACCTT+AGG | + | chr1_4:43963953-43963972 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | - | chr1_4:43964423-43964442 | Msa0164470:intron | 45.0% | |
| TGTCCGTATCCGTGCTAAAT+AGG | - | chr1_4:43964622-43964641 | Msa0164470:intron | 45.0% | |
| CGTCCTATTTAGCACGGATA+CGG | + | chr1_4:43964628-43964647 | None:intergenic | 45.0% | |
| GTATCGCGTCCTATTTAGCA+CGG | + | chr1_4:43964634-43964653 | None:intergenic | 45.0% | |
| GTTCCGTAATTGAGCACGAA+AGG | - | chr1_4:43965058-43965077 | Msa0164470:intron | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | - | chr1_4:43965203-43965222 | Msa0164470:intron | 45.0% | |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | - | chr1_4:43965459-43965478 | Msa0164470:intron | 45.0% |
| TGGGTCTTGCAACTAGAAGT+TGG | + | chr1_4:43965557-43965576 | None:intergenic | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | - | chr1_4:43965560-43965579 | Msa0164470:CDS | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | + | chr1_4:43965576-43965595 | None:intergenic | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | + | chr1_4:43965577-43965596 | None:intergenic | 45.0% | |
| TAGAATAGAAGGGAGCAGGT+GGG | + | chr1_4:43965830-43965849 | None:intergenic | 45.0% | |
| TTAGAATAGAAGGGAGCAGG+TGG | + | chr1_4:43965831-43965850 | None:intergenic | 45.0% | |
| CATACTAACGGCGGCAATCA+CGG | - | chr1_4:43963712-43963731 | Msa0164470:three_prime_UTR | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | - | chr1_4:43963809-43963828 | Msa0164470:CDS | 50.0% |
| CAATCCCAACGTGAATCCGT+CGG | + | chr1_4:43963816-43963835 | None:intergenic | 50.0% | |
| AAAAGAACGAACCGCGACGA+AGG | + | chr1_4:43963996-43964015 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | - | chr1_4:43964416-43964435 | Msa0164470:intron | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | - | chr1_4:43964498-43964517 | Msa0164470:intron | 50.0% | |
| TTTAGCACGGATACGGACAC+CGG | + | chr1_4:43964621-43964640 | None:intergenic | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | + | chr1_4:43965002-43965021 | None:intergenic | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | - | chr1_4:43965172-43965191 | Msa0164470:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | - | chr1_4:43965182-43965201 | Msa0164470:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | + | chr1_4:43965193-43965212 | None:intergenic | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | - | chr1_4:43965190-43965209 | Msa0164470:intron | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | - | chr1_4:43965520-43965539 | Msa0164470:intron | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | - | chr1_4:43965568-43965587 | Msa0164470:CDS | 50.0% | |
| ! | GGAACTGTGGATTGCAGCTT+AGG | - | chr1_4:43965581-43965600 | Msa0164470:CDS | 50.0% |
| CTTCGCCAGTATTCGCTCTA+CGG | - | chr1_4:43965674-43965693 | Msa0164470:CDS | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | + | chr1_4:43965682-43965701 | None:intergenic | 50.0% | |
| CGTGATTGCCGCCGTTAGTA+TGG | + | chr1_4:43963714-43963733 | None:intergenic | 55.0% | |
| ACGTGAATCCGTCGGATCTC+TGG | + | chr1_4:43963808-43963827 | None:intergenic | 55.0% | |
| ! | GAGATCCGACGGATTCACGT+TGG | - | chr1_4:43963808-43963827 | Msa0164470:CDS | 55.0% |
| ! | CGACGGATTCACGTTGGGAT+TGG | - | chr1_4:43963814-43963833 | Msa0164470:CDS | 55.0% |
| TCGCGTCAGCGTCACAACAA+CGG | + | chr1_4:43964454-43964473 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | + | chr1_4:43965676-43965695 | None:intergenic | 55.0% | |
| ACTAACGGCGGCAATCACGG+CGG | - | chr1_4:43963715-43963734 | Msa0164470:three_prime_UTR | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | + | chr1_4:43963788-43963807 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | - | chr1_4:43963797-43963816 | Msa0164470:exon | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | - | chr1_4:43963829-43963848 | Msa0164470:CDS | 60.0% |
| ACACGACACGTGTCCGACAC+CGG | + | chr1_4:43964514-43964533 | None:intergenic | 60.0% | |
| CAATGACGGCGTGTCGTGTC+CGG | - | chr1_4:43964599-43964618 | Msa0164470:intron | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr1_4:43964513-43964532 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43963539 | 43966019 | 43963539 | ID=Msa0164470;Name=Msa0164470 |
| chr1_4 | mRNA | 43963539 | 43966019 | 43963539 | ID=Msa0164470-mRNA-1;Parent=Msa0164470;Name=Msa0164470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|3|268|240 |
| chr1_4 | exon | 43963539 | 43964118 | 43963539 | ID=Msa0164470-mRNA-1:exon:12559;Parent=Msa0164470-mRNA-1 |
| chr1_4 | exon | 43964260 | 43964364 | 43964260 | ID=Msa0164470-mRNA-1:exon:12558;Parent=Msa0164470-mRNA-1 |
| chr1_4 | exon | 43965555 | 43966019 | 43965555 | ID=Msa0164470-mRNA-1:exon:12557;Parent=Msa0164470-mRNA-1 |
| chr1_4 | five_prime_UTR | 43965861 | 43966019 | 43965861 | ID=Msa0164470-mRNA-1:five_prime_utr;Parent=Msa0164470-mRNA-1 |
| chr1_4 | CDS | 43965555 | 43965860 | 43965555 | ID=Msa0164470-mRNA-1:cds;Parent=Msa0164470-mRNA-1 |
| chr1_4 | CDS | 43964260 | 43964364 | 43964260 | ID=Msa0164470-mRNA-1:cds;Parent=Msa0164470-mRNA-1 |
| chr1_4 | CDS | 43963807 | 43964118 | 43963807 | ID=Msa0164470-mRNA-1:cds;Parent=Msa0164470-mRNA-1 |
| chr1_4 | three_prime_UTR | 43963539 | 43963806 | 43963539 | ID=Msa0164470-mRNA-1:three_prime_utr;Parent=Msa0164470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
