Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071410 | XP_003590316.1 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 5.66e-173 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071410 | B7FHS4 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 2.70e-173 | 485 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071410 | Msa0119290 | 0.818959 | 1.492634e-52 | -8.615850e-47 |
| Msa0071410 | Msa0164470 | 0.814571 | 1.439397e-51 | -8.615850e-47 |
| Msa0071410 | Msa0195640 | 0.817050 | 4.031537e-52 | -8.615850e-47 |
| Msa0071410 | Msa1031350 | 0.808987 | 2.364341e-50 | -8.615850e-47 |
| Msa0071410 | Msa1070460 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0071410 | Msa1083700 | 0.810234 | 1.275701e-50 | -8.615850e-47 |
| Msa0071410 | Msa1166660 | 0.834849 | 2.363000e-56 | -8.615850e-47 |
| Msa0071410 | Msa1251410 | 0.806823 | 6.821061e-50 | -8.615850e-47 |
| Msa0071410 | Msa1292020 | 0.815161 | 1.065363e-51 | -8.615850e-47 |
| Msa0071410 | Msa1381260 | 0.805212 | 1.488370e-49 | -8.615850e-47 |
| Msa0071410 | Msa1422590 | 0.820408 | 6.969559e-53 | -8.615850e-47 |
| Msa0071410 | Msa1449780 | 0.802399 | 5.715251e-49 | -8.615850e-47 |
| Msa0071410 | Msa1462740 | 0.805095 | 1.574658e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071410 | MtrunA17_Chr1g0177061 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 5.20e-177 | 485 |
| Msa0071410 | MtrunA17_Chr4g0033931 | 60.435 | 230 | 81 | 6 | 3 | 232 | 20 | 239 | 5.05e-92 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071410 | AT3G44150.1 | 65.844 | 243 | 74 | 3 | 5 | 240 | 6 | 246 | 4.03e-116 | 332 |
| Msa0071410 | AT3G11800.1 | 60.569 | 246 | 91 | 4 | 1 | 240 | 1 | 246 | 1.53e-101 | 295 |
| Msa0071410 | AT2G15910.1 | 55.556 | 225 | 85 | 4 | 21 | 233 | 142 | 363 | 1.17e-83 | 254 |
| Msa0071410 | AT3G48630.1 | 52.381 | 63 | 30 | 0 | 107 | 169 | 2 | 64 | 1.50e-15 | 71.2 |
Find 67 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACTAATTACACTAAT+TGG | 0.260828 | 1_2:-43318624 | None:intergenic |
| GGCTATATGGTTGCATTTGC+TGG | 0.262227 | 1_2:+43317857 | Msa0071410:CDS |
| ACAAATACATTTAGAATAGA+AGG | 0.280141 | 1_2:-43318492 | None:intergenic |
| TCTAGTTGCAAGACCCATTC+AGG | 0.301444 | 1_2:+43318214 | Msa0071410:CDS |
| TCAAAAGCTGTCTGTCTTAA+CGG | 0.317183 | 1_2:+43318169 | Msa0071410:CDS |
| AACTTCTCAGATTTGAATAA+AGG | 0.324415 | 1_2:-43318351 | None:intergenic |
| GAAGTGTGAAAACTGCTAAT+TGG | 0.330920 | 1_2:-43316497 | None:intergenic |
| AATGTACACACCATCATTCT+AGG | 0.336765 | 1_2:-43318519 | None:intergenic |
| GCAGGCTGCAAAATTTGTTC+TGG | 0.348048 | 1_2:+43318113 | Msa0071410:CDS |
| AAACAAAGAGATCTGAGAAT+TGG | 0.348925 | 1_2:-43316750 | None:intergenic |
| TTTCAAATGCATAAGTGAAT+TGG | 0.350973 | 1_2:-43316414 | None:intergenic |
| GGAACTGTGGATTGCAGCTT+AGG | 0.380580 | 1_2:+43318235 | Msa0071410:CDS |
| CCAGGACTCGTATGGCTATA+TGG | 0.380916 | 1_2:+43317844 | Msa0071410:intron |
| AGAGATCTGAGAATTGGAAT+TGG | 0.391834 | 1_2:-43316744 | None:intergenic |
| ACGTGAATCCGTCGGATCTC+TGG | 0.396037 | 1_2:-43316631 | None:intergenic |
| TCTCCTTACGAGAGTAAAAC+TGG | 0.396842 | 1_2:-43317939 | None:intergenic |
| GATCTCTTTGTTTAGACCTA+AGG | 0.399270 | 1_2:+43316760 | Msa0071410:CDS |
| AAAATCAACAAAAGAACTAT+AGG | 0.400149 | 1_2:-43318409 | None:intergenic |
| GGTATACAATTAGCATTCTC+TGG | 0.422113 | 1_2:+43318256 | Msa0071410:CDS |
| CGTGATTGCCGCCGTTAGTA+AGG | 0.437429 | 1_2:-43316537 | None:intergenic |
| CGACGGATTCACGTTGGGAT+TGG | 0.441401 | 1_2:+43316640 | Msa0071410:CDS |
| AAATGTTATATTGATTATGC+TGG | 0.446823 | 1_2:+43318550 | Msa0071410:three_prime_UTR |
| TGCAATCCACAGTTCCTGAA+TGG | 0.448720 | 1_2:-43318228 | None:intergenic |
| AAAGGCCGTAGAGCGAATAC+TGG | 0.466757 | 1_2:-43318333 | None:intergenic |
| GCAGGTTCTTGAATTTAAGA+AGG | 0.472061 | 1_2:+43318090 | Msa0071410:intron |
| GCAATCCACAGTTCCTGAAT+GGG | 0.474537 | 1_2:-43318227 | None:intergenic |
| TTCTTGAATTTAAGAAGGGC+AGG | 0.475638 | 1_2:+43318095 | Msa0071410:CDS |
| AAATACTTTGTTTGTGTCGC+CGG | 0.480152 | 1_2:-43316585 | None:intergenic |
| AGCTGTCTGTCTTAACGGTC+AGG | 0.480537 | 1_2:+43318174 | Msa0071410:CDS |
| ACCTATCAGCTCTTAACTCT+TGG | 0.485780 | 1_2:+43318290 | Msa0071410:CDS |
| AGATCCGACGGATTCACGTT+GGG | 0.494461 | 1_2:+43316635 | Msa0071410:CDS |
| AAAAGAACGAACCGCGACGA+AGG | 0.499053 | 1_2:-43316819 | None:intergenic |
| CAGTTATATAAGAATTCATA+AGG | 0.502629 | 1_2:-43318580 | None:intergenic |
| TATATTGATTATGCTGGATA+CGG | 0.504888 | 1_2:+43318556 | Msa0071410:three_prime_UTR |
| GGGATTGGCGTTCGCTTCGA+AGG | 0.508869 | 1_2:+43316655 | Msa0071410:CDS |
| AACGAGATCTCATCGACCTT+AGG | 0.518253 | 1_2:-43316776 | None:intergenic |
| CTTACTAACGGCGGCAATCA+CGG | 0.524762 | 1_2:+43316538 | Msa0071410:CDS |
| AATTTGTTCTGGAAAAGAGA+TGG | 0.524965 | 1_2:+43318124 | Msa0071410:CDS |
| ATTTGTTCTGGAAAAGAGAT+GGG | 0.526774 | 1_2:+43318125 | Msa0071410:CDS |
| CATTTAGAATAGAAGGGAGC+AGG | 0.532748 | 1_2:-43318485 | None:intergenic |
| TCGTTGTTCCAGGACTCGTA+TGG | 0.538029 | 1_2:+43317836 | Msa0071410:intron |
| CAAATACATTTAGAATAGAA+GGG | 0.544289 | 1_2:-43318491 | None:intergenic |
| CAGGTTCTTGAATTTAAGAA+GGG | 0.554852 | 1_2:+43318091 | Msa0071410:intron |
| ATATGGTTGCATTTGCTGGT+CGG | 0.559957 | 1_2:+43317861 | Msa0071410:CDS |
| TGGACGCGTGTGTCTGTGCA+AGG | 0.560053 | 1_2:-43316611 | None:intergenic |
| TGGGTCTTGCAACTAGAAGT+TGG | 0.561016 | 1_2:-43318208 | None:intergenic |
| GAGCCATTTGCAATAAAAGC+AGG | 0.564861 | 1_2:-43317905 | None:intergenic |
| CTTCGCCAGTATTCGCTCTA+CGG | 0.577552 | 1_2:+43318328 | Msa0071410:CDS |
| TTAGAATAGAAGGGAGCAGG+TGG | 0.586991 | 1_2:-43318482 | None:intergenic |
| ACCAAGAGTTAAGAGCTGAT+AGG | 0.587698 | 1_2:-43318291 | None:intergenic |
| ATTTGCAATAAAAGCAGGAG+GGG | 0.604175 | 1_2:-43317900 | None:intergenic |
| GGCGGTTATCACCTTACTAA+CGG | 0.609250 | 1_2:+43316526 | Msa0071410:CDS |
| TAGTAAGGTGATAACCGCCA+TGG | 0.618677 | 1_2:-43316522 | None:intergenic |
| ATTTGTGAAACCTAGAATGA+TGG | 0.620825 | 1_2:+43318509 | Msa0071410:three_prime_UTR |
| CAAGACCCATTCAGGAACTG+TGG | 0.625926 | 1_2:+43318222 | Msa0071410:CDS |
| CCATTTGCAATAAAAGCAGG+AGG | 0.635505 | 1_2:-43317902 | None:intergenic |
| CGTAGAGCGAATACTGGCGA+AGG | 0.636590 | 1_2:-43318327 | None:intergenic |
| GAGATCCGACGGATTCACGT+TGG | 0.648636 | 1_2:+43316634 | Msa0071410:CDS |
| TTTCTAGCTTCAGCATACGC+CGG | 0.651746 | 1_2:+43316566 | Msa0071410:CDS |
| CAATCCCAACGTGAATCCGT+CGG | 0.652871 | 1_2:-43316639 | None:intergenic |
| CATTTGCAATAAAAGCAGGA+GGG | 0.666708 | 1_2:-43317901 | None:intergenic |
| ACACGCGTCCAGAGATCCGA+CGG | 0.668735 | 1_2:+43316623 | Msa0071410:CDS |
| TAATTCTTCTTCCTTCGTCG+CGG | 0.682591 | 1_2:+43316808 | Msa0071410:CDS |
| TAGAATAGAAGGGAGCAGGT+GGG | 0.687668 | 1_2:-43318481 | None:intergenic |
| AGCGAGAGTCTAGAATCACA+CGG | 0.714759 | 1_2:-43316719 | None:intergenic |
| ACTAACGGCGGCAATCACGG+CGG | 0.742049 | 1_2:+43316541 | Msa0071410:CDS |
| GGTTATCACCTTACTAACGG+CGG | 0.765107 | 1_2:+43316529 | Msa0071410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATAATTGAATTCAATT+AGG | + | chr1_2:43316891-43316910 | Msa0071410:intron | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | + | chr1_2:43316892-43316911 | Msa0071410:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | + | chr1_2:43317391-43317410 | Msa0071410:intron | 10.0% |
| !! | TTTAATAATTGAATTCAATT+AGG | + | chr1_2:43316891-43316910 | Msa0071410:intron | 10.0% |
| !! | TTAATAATTGAATTCAATTA+GGG | + | chr1_2:43316892-43316911 | Msa0071410:intron | 10.0% |
| !!! | CTTTTTTTAGTTTTTAATTT+TGG | + | chr1_2:43317391-43317410 | Msa0071410:intron | 10.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | + | chr1_2:43316960-43316979 | Msa0071410:intron | 15.0% |
| !!! | TAGTTTATTTGATAATTAAC+TGG | + | chr1_2:43316960-43316979 | Msa0071410:intron | 15.0% |
| !!! | ATTTTCGAGTATATCATATA+TGG | + | chr1_2:43317137-43317156 | Msa0071410:intron | 20.0% |
| !! | CGAGTTATTTAATTGAAAAT+AGG | + | chr1_2:43317424-43317443 | Msa0071410:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+AGG | + | chr1_2:43317431-43317450 | Msa0071410:intron | 20.0% |
| !! | TTAATTGAAAATAGGAGTTA+GGG | + | chr1_2:43317432-43317451 | Msa0071410:intron | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | + | chr1_2:43317527-43317546 | Msa0071410:intron | 20.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | - | chr1_2:43317597-43317616 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | - | chr1_2:43317691-43317710 | None:intergenic | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | - | chr1_2:43317971-43317990 | None:intergenic | 20.0% |
| !! | ATTAGAAAAACTTATCATAC+TGG | - | chr1_2:43318387-43318406 | None:intergenic | 20.0% |
| !! | AAAATCAACAAAAGAACTAT+AGG | - | chr1_2:43318412-43318431 | None:intergenic | 20.0% |
| !!! | CAAATACATTTAGAATAGAA+GGG | - | chr1_2:43318494-43318513 | None:intergenic | 20.0% |
| !!! | ACAAATACATTTAGAATAGA+AGG | - | chr1_2:43318495-43318514 | None:intergenic | 20.0% |
| !!! | AAATGTTATATTGATTATGC+TGG | + | chr1_2:43318550-43318569 | Msa0071410:three_prime_UTR | 20.0% |
| !! | CAGTTATATAAGAATTCATA+AGG | - | chr1_2:43318583-43318602 | None:intergenic | 20.0% |
| !! | ATTACACTTCAGTAAAAAAA+AGG | - | chr1_2:43318645-43318664 | None:intergenic | 20.0% |
| !!! | ATTTTCGAGTATATCATATA+TGG | + | chr1_2:43317137-43317156 | Msa0071410:intron | 20.0% |
| !! | CGAGTTATTTAATTGAAAAT+AGG | + | chr1_2:43317424-43317443 | Msa0071410:intron | 20.0% |
| !! | TTTAATTGAAAATAGGAGTT+AGG | + | chr1_2:43317431-43317450 | Msa0071410:intron | 20.0% |
| !! | TTAATTGAAAATAGGAGTTA+GGG | + | chr1_2:43317432-43317451 | Msa0071410:intron | 20.0% |
| !!! | ATTTACAATACAAGTTTTGT+AGG | + | chr1_2:43317527-43317546 | Msa0071410:intron | 20.0% |
| !! | AATTGAGTTAGATAAAGATT+CGG | - | chr1_2:43317597-43317616 | None:intergenic | 20.0% |
| !! | TATACAAATATGTACTTCTT+TGG | - | chr1_2:43317691-43317710 | None:intergenic | 20.0% |
| !!! | ATTGAGAAATTTTTTTAACC+AGG | - | chr1_2:43317971-43317990 | None:intergenic | 20.0% |
| !! | ATTAGAAAAACTTATCATAC+TGG | - | chr1_2:43318387-43318406 | None:intergenic | 20.0% |
| !! | AAAATCAACAAAAGAACTAT+AGG | - | chr1_2:43318412-43318431 | None:intergenic | 20.0% |
| !!! | CAAATACATTTAGAATAGAA+GGG | - | chr1_2:43318494-43318513 | None:intergenic | 20.0% |
| !!! | ACAAATACATTTAGAATAGA+AGG | - | chr1_2:43318495-43318514 | None:intergenic | 20.0% |
| !!! | AAATGTTATATTGATTATGC+TGG | + | chr1_2:43318550-43318569 | Msa0071410:three_prime_UTR | 20.0% |
| !! | CAGTTATATAAGAATTCATA+AGG | - | chr1_2:43318583-43318602 | None:intergenic | 20.0% |
| !! | ATTACACTTCAGTAAAAAAA+AGG | - | chr1_2:43318645-43318664 | None:intergenic | 20.0% |
| ! | TTTCAAATGCATAAGTGAAT+TGG | - | chr1_2:43316417-43316436 | None:intergenic | 25.0% |
| !! | TTGAAAAACTTTTGTTAACG+TGG | + | chr1_2:43316431-43316450 | Msa0071410:five_prime_UTR | 25.0% |
| !!! | ATTGGTTTGATTTTGAAGTT+TGG | - | chr1_2:43316482-43316501 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | - | chr1_2:43316847-43316866 | None:intergenic | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | - | chr1_2:43316994-43317013 | None:intergenic | 25.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | + | chr1_2:43316995-43317014 | Msa0071410:intron | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | + | chr1_2:43316996-43317015 | Msa0071410:intron | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | - | chr1_2:43317000-43317019 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | - | chr1_2:43317001-43317020 | None:intergenic | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | - | chr1_2:43317677-43317696 | None:intergenic | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | + | chr1_2:43317800-43317819 | Msa0071410:intron | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | + | chr1_2:43317801-43317820 | Msa0071410:intron | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | - | chr1_2:43318354-43318373 | None:intergenic | 25.0% |
| !! | TATATTGATTATGCTGGATA+CGG | + | chr1_2:43318556-43318575 | Msa0071410:three_prime_UTR | 25.0% |
| ! | AAAGGACTAATTACACTAAT+TGG | - | chr1_2:43318627-43318646 | None:intergenic | 25.0% |
| !!! | TACTGAAGTGTAATTTTTTC+TGG | + | chr1_2:43318651-43318670 | Msa0071410:three_prime_UTR | 25.0% |
| ! | TTTCAAATGCATAAGTGAAT+TGG | - | chr1_2:43316417-43316436 | None:intergenic | 25.0% |
| !! | TTGAAAAACTTTTGTTAACG+TGG | + | chr1_2:43316431-43316450 | Msa0071410:five_prime_UTR | 25.0% |
| !!! | ATTGGTTTGATTTTGAAGTT+TGG | - | chr1_2:43316482-43316501 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAAGAGAAGAA+AGG | - | chr1_2:43316847-43316866 | None:intergenic | 25.0% |
| ! | AGTACAATAAATTAGGGTTT+AGG | - | chr1_2:43316994-43317013 | None:intergenic | 25.0% |
| ! | AACCCTAATTTATTGTACTT+TGG | + | chr1_2:43316995-43317014 | Msa0071410:intron | 25.0% |
| ! | ACCCTAATTTATTGTACTTT+GGG | + | chr1_2:43316996-43317015 | Msa0071410:intron | 25.0% |
| ! | ACCCAAAGTACAATAAATTA+GGG | - | chr1_2:43317000-43317019 | None:intergenic | 25.0% |
| ! | TACCCAAAGTACAATAAATT+AGG | - | chr1_2:43317001-43317020 | None:intergenic | 25.0% |
| !! | CTTCTTTGGTTTATAAACTA+AGG | - | chr1_2:43317677-43317696 | None:intergenic | 25.0% |
| !!! | TATCTTTTGATTAGTTTGTG+TGG | + | chr1_2:43317800-43317819 | Msa0071410:intron | 25.0% |
| !!! | ATCTTTTGATTAGTTTGTGT+GGG | + | chr1_2:43317801-43317820 | Msa0071410:intron | 25.0% |
| ! | AACTTCTCAGATTTGAATAA+AGG | - | chr1_2:43318354-43318373 | None:intergenic | 25.0% |
| !! | TATATTGATTATGCTGGATA+CGG | + | chr1_2:43318556-43318575 | Msa0071410:three_prime_UTR | 25.0% |
| ! | AAAGGACTAATTACACTAAT+TGG | - | chr1_2:43318627-43318646 | None:intergenic | 25.0% |
| AAACAAAGAGATCTGAGAAT+TGG | - | chr1_2:43316753-43316772 | None:intergenic | 30.0% | |
| ATGAAGTGTAATCTTTGAAC+TGG | + | chr1_2:43317047-43317066 | Msa0071410:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | + | chr1_2:43317074-43317093 | Msa0071410:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | + | chr1_2:43317159-43317178 | Msa0071410:intron | 30.0% |
| TTGTTAAATAGAAGCTAGAG+TGG | + | chr1_2:43317218-43317237 | Msa0071410:intron | 30.0% | |
| AAAATAGGAGTTAGGGAATT+TGG | + | chr1_2:43317439-43317458 | Msa0071410:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | + | chr1_2:43317484-43317503 | Msa0071410:intron | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | + | chr1_2:43317485-43317504 | Msa0071410:intron | 30.0% | |
| AAAGCAAAAATTGACGAAAC+TGG | - | chr1_2:43317774-43317793 | None:intergenic | 30.0% | |
| ATGATTACAACTACAGCAAA+TGG | - | chr1_2:43318041-43318060 | None:intergenic | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | + | chr1_2:43318091-43318110 | Msa0071410:intron | 30.0% | |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | + | chr1_2:43318124-43318143 | Msa0071410:CDS | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | + | chr1_2:43318125-43318144 | Msa0071410:CDS | 30.0% |
| ATTTGTGAAACCTAGAATGA+TGG | + | chr1_2:43318509-43318528 | Msa0071410:three_prime_UTR | 30.0% | |
| AAACAAAGAGATCTGAGAAT+TGG | - | chr1_2:43316753-43316772 | None:intergenic | 30.0% | |
| ATGAAGTGTAATCTTTGAAC+TGG | + | chr1_2:43317047-43317066 | Msa0071410:intron | 30.0% | |
| CTAATTAACTGCGAAATTTC+CGG | + | chr1_2:43317074-43317093 | Msa0071410:intron | 30.0% | |
| ! | GATCAAAGTCTCTATGTTTT+GGG | + | chr1_2:43317159-43317178 | Msa0071410:intron | 30.0% |
| TTGTTAAATAGAAGCTAGAG+TGG | + | chr1_2:43317218-43317237 | Msa0071410:intron | 30.0% | |
| AAAATAGGAGTTAGGGAATT+TGG | + | chr1_2:43317439-43317458 | Msa0071410:intron | 30.0% | |
| TAGTTTACAACACAAAAACG+AGG | + | chr1_2:43317484-43317503 | Msa0071410:intron | 30.0% | |
| AGTTTACAACACAAAAACGA+GGG | + | chr1_2:43317485-43317504 | Msa0071410:intron | 30.0% | |
| AAAGCAAAAATTGACGAAAC+TGG | - | chr1_2:43317774-43317793 | None:intergenic | 30.0% | |
| ATGATTACAACTACAGCAAA+TGG | - | chr1_2:43318041-43318060 | None:intergenic | 30.0% | |
| CAGGTTCTTGAATTTAAGAA+GGG | + | chr1_2:43318091-43318110 | Msa0071410:intron | 30.0% | |
| !! | AATTTGTTCTGGAAAAGAGA+TGG | + | chr1_2:43318124-43318143 | Msa0071410:CDS | 30.0% |
| !! | ATTTGTTCTGGAAAAGAGAT+GGG | + | chr1_2:43318125-43318144 | Msa0071410:CDS | 30.0% |
| ATTTGTGAAACCTAGAATGA+TGG | + | chr1_2:43318509-43318528 | Msa0071410:three_prime_UTR | 30.0% | |
| GAAGTGTGAAAACTGCTAAT+TGG | - | chr1_2:43316500-43316519 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | - | chr1_2:43316588-43316607 | None:intergenic | 35.0% |
| AGAGATCTGAGAATTGGAAT+TGG | - | chr1_2:43316747-43316766 | None:intergenic | 35.0% | |
| ! | GATCTCTTTGTTTAGACCTA+AGG | + | chr1_2:43316760-43316779 | Msa0071410:CDS | 35.0% |
| TCCAGTAAAAATGAGGTTTC+CGG | - | chr1_2:43317096-43317115 | None:intergenic | 35.0% | |
| !! | ACCTCATTTTTACTGGACAT+TGG | + | chr1_2:43317099-43317118 | Msa0071410:intron | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | + | chr1_2:43317100-43317119 | Msa0071410:intron | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | + | chr1_2:43317112-43317131 | Msa0071410:intron | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | + | chr1_2:43317158-43317177 | Msa0071410:intron | 35.0% |
| TATGAAGCACATACACTCTT+TGG | + | chr1_2:43317302-43317321 | Msa0071410:intron | 35.0% | |
| ATTGCAGATAGTGTCAATGT+CGG | - | chr1_2:43317363-43317382 | None:intergenic | 35.0% | |
| TTTCCTAGCAAGTGGATAAT+GGG | - | chr1_2:43317647-43317666 | None:intergenic | 35.0% | |
| AAACCTTTCGTGCTCAATTA+CGG | - | chr1_2:43317717-43317736 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | - | chr1_2:43317903-43317922 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | - | chr1_2:43317904-43317923 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | - | chr1_2:43318073-43318092 | None:intergenic | 35.0% | |
| ! | ATTTGAAATCTTACTCCTGC+AGG | + | chr1_2:43318072-43318091 | Msa0071410:intron | 35.0% |
| TCTTAAATTCAAGAACCTGC+AGG | - | chr1_2:43318090-43318109 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | + | chr1_2:43318090-43318109 | Msa0071410:intron | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | + | chr1_2:43318095-43318114 | Msa0071410:CDS | 35.0% | |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | - | chr1_2:43318162-43318181 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | - | chr1_2:43318163-43318182 | None:intergenic | 35.0% |
| TCAAAAGCTGTCTGTCTTAA+CGG | + | chr1_2:43318169-43318188 | Msa0071410:CDS | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | + | chr1_2:43318256-43318275 | Msa0071410:CDS | 35.0% | |
| AATGTACACACCATCATTCT+AGG | - | chr1_2:43318522-43318541 | None:intergenic | 35.0% | |
| GAAGTGTGAAAACTGCTAAT+TGG | - | chr1_2:43316500-43316519 | None:intergenic | 35.0% | |
| ! | AAATACTTTGTTTGTGTCGC+CGG | - | chr1_2:43316588-43316607 | None:intergenic | 35.0% |
| AGAGATCTGAGAATTGGAAT+TGG | - | chr1_2:43316747-43316766 | None:intergenic | 35.0% | |
| ! | GATCTCTTTGTTTAGACCTA+AGG | + | chr1_2:43316760-43316779 | Msa0071410:CDS | 35.0% |
| TCCAGTAAAAATGAGGTTTC+CGG | - | chr1_2:43317096-43317115 | None:intergenic | 35.0% | |
| !! | ACCTCATTTTTACTGGACAT+TGG | + | chr1_2:43317099-43317118 | Msa0071410:intron | 35.0% |
| !! | CCTCATTTTTACTGGACATT+GGG | + | chr1_2:43317100-43317119 | Msa0071410:intron | 35.0% |
| !! | TGGACATTGGGTTTTAATGA+TGG | + | chr1_2:43317112-43317131 | Msa0071410:intron | 35.0% |
| ! | GGATCAAAGTCTCTATGTTT+TGG | + | chr1_2:43317158-43317177 | Msa0071410:intron | 35.0% |
| TATGAAGCACATACACTCTT+TGG | + | chr1_2:43317302-43317321 | Msa0071410:intron | 35.0% | |
| ATTGCAGATAGTGTCAATGT+CGG | - | chr1_2:43317363-43317382 | None:intergenic | 35.0% | |
| TTTCCTAGCAAGTGGATAAT+GGG | - | chr1_2:43317647-43317666 | None:intergenic | 35.0% | |
| AAACCTTTCGTGCTCAATTA+CGG | - | chr1_2:43317717-43317736 | None:intergenic | 35.0% | |
| ATTTGCAATAAAAGCAGGAG+GGG | - | chr1_2:43317903-43317922 | None:intergenic | 35.0% | |
| CATTTGCAATAAAAGCAGGA+GGG | - | chr1_2:43317904-43317923 | None:intergenic | 35.0% | |
| TGCAGGAGTAAGATTTCAAA+TGG | - | chr1_2:43318073-43318092 | None:intergenic | 35.0% | |
| ! | ATTTGAAATCTTACTCCTGC+AGG | + | chr1_2:43318072-43318091 | Msa0071410:intron | 35.0% |
| TCTTAAATTCAAGAACCTGC+AGG | - | chr1_2:43318090-43318109 | None:intergenic | 35.0% | |
| GCAGGTTCTTGAATTTAAGA+AGG | + | chr1_2:43318090-43318109 | Msa0071410:intron | 35.0% | |
| TTCTTGAATTTAAGAAGGGC+AGG | + | chr1_2:43318095-43318114 | Msa0071410:CDS | 35.0% | |
| !!! | AGACAGCTTTTGAGTTTTTC+GGG | - | chr1_2:43318162-43318181 | None:intergenic | 35.0% |
| !!! | CAGACAGCTTTTGAGTTTTT+CGG | - | chr1_2:43318163-43318182 | None:intergenic | 35.0% |
| TCAAAAGCTGTCTGTCTTAA+CGG | + | chr1_2:43318169-43318188 | Msa0071410:CDS | 35.0% | |
| GGTATACAATTAGCATTCTC+TGG | + | chr1_2:43318256-43318275 | Msa0071410:CDS | 35.0% | |
| AATGTACACACCATCATTCT+AGG | - | chr1_2:43318522-43318541 | None:intergenic | 35.0% | |
| ! | CAGTTTTCACACTTCTTCCA+TGG | + | chr1_2:43316505-43316524 | Msa0071410:exon | 40.0% |
| ! | TTTTCACACTTCTTCCATGG+CGG | + | chr1_2:43316508-43316527 | Msa0071410:exon | 40.0% |
| TAATTCTTCTTCCTTCGTCG+CGG | + | chr1_2:43316808-43316827 | Msa0071410:CDS | 40.0% | |
| !! | TCCGGAAACCTCATTTTTAC+TGG | + | chr1_2:43317092-43317111 | Msa0071410:intron | 40.0% |
| CCCAATGTCCAGTAAAAATG+AGG | - | chr1_2:43317103-43317122 | None:intergenic | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | - | chr1_2:43317251-43317270 | None:intergenic | 40.0% | |
| ! | TCTTTGGATTAGACTTGTCC+CGG | + | chr1_2:43317318-43317337 | Msa0071410:intron | 40.0% |
| ATTCCCATTATCCACTTGCT+AGG | + | chr1_2:43317641-43317660 | Msa0071410:intron | 40.0% | |
| CTTTCCTAGCAAGTGGATAA+TGG | - | chr1_2:43317648-43317667 | None:intergenic | 40.0% | |
| ! | CATTATCCACTTGCTAGGAA+AGG | + | chr1_2:43317646-43317665 | Msa0071410:intron | 40.0% |
| ! | ATATGGTTGCATTTGCTGGT+CGG | + | chr1_2:43317861-43317880 | Msa0071410:CDS | 40.0% |
| CCATTTGCAATAAAAGCAGG+AGG | - | chr1_2:43317905-43317924 | None:intergenic | 40.0% | |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | + | chr1_2:43317902-43317921 | Msa0071410:CDS | 40.0% |
| GAGCCATTTGCAATAAAAGC+AGG | - | chr1_2:43317908-43317927 | None:intergenic | 40.0% | |
| ! | TGACCAGTTTTACTCTCGTA+AGG | + | chr1_2:43317936-43317955 | Msa0071410:intron | 40.0% |
| TCTCCTTACGAGAGTAAAAC+TGG | - | chr1_2:43317942-43317961 | None:intergenic | 40.0% | |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | + | chr1_2:43317950-43317969 | Msa0071410:intron | 40.0% |
| ACCTATCAGCTCTTAACTCT+TGG | + | chr1_2:43318290-43318309 | Msa0071410:CDS | 40.0% | |
| ACCAAGAGTTAAGAGCTGAT+AGG | - | chr1_2:43318294-43318313 | None:intergenic | 40.0% | |
| ! | CATTTAGAATAGAAGGGAGC+AGG | - | chr1_2:43318488-43318507 | None:intergenic | 40.0% |
| ! | CAGTTTTCACACTTCTTCCA+TGG | + | chr1_2:43316505-43316524 | Msa0071410:exon | 40.0% |
| ! | TTTTCACACTTCTTCCATGG+CGG | + | chr1_2:43316508-43316527 | Msa0071410:exon | 40.0% |
| TAATTCTTCTTCCTTCGTCG+CGG | + | chr1_2:43316808-43316827 | Msa0071410:CDS | 40.0% | |
| !! | TCCGGAAACCTCATTTTTAC+TGG | + | chr1_2:43317092-43317111 | Msa0071410:intron | 40.0% |
| CCCAATGTCCAGTAAAAATG+AGG | - | chr1_2:43317103-43317122 | None:intergenic | 40.0% | |
| CAAATTCCACTGTGCTATAG+CGG | - | chr1_2:43317251-43317270 | None:intergenic | 40.0% | |
| ! | TCTTTGGATTAGACTTGTCC+CGG | + | chr1_2:43317318-43317337 | Msa0071410:intron | 40.0% |
| ATTCCCATTATCCACTTGCT+AGG | + | chr1_2:43317641-43317660 | Msa0071410:intron | 40.0% | |
| CTTTCCTAGCAAGTGGATAA+TGG | - | chr1_2:43317648-43317667 | None:intergenic | 40.0% | |
| ! | CATTATCCACTTGCTAGGAA+AGG | + | chr1_2:43317646-43317665 | Msa0071410:intron | 40.0% |
| ! | ATATGGTTGCATTTGCTGGT+CGG | + | chr1_2:43317861-43317880 | Msa0071410:CDS | 40.0% |
| CCATTTGCAATAAAAGCAGG+AGG | - | chr1_2:43317905-43317924 | None:intergenic | 40.0% | |
| !! | CCTCCTGCTTTTATTGCAAA+TGG | + | chr1_2:43317902-43317921 | Msa0071410:CDS | 40.0% |
| GAGCCATTTGCAATAAAAGC+AGG | - | chr1_2:43317908-43317927 | None:intergenic | 40.0% | |
| ! | TGACCAGTTTTACTCTCGTA+AGG | + | chr1_2:43317936-43317955 | Msa0071410:intron | 40.0% |
| TCTCCTTACGAGAGTAAAAC+TGG | - | chr1_2:43317942-43317961 | None:intergenic | 40.0% | |
| !!! | CTCGTAAGGAGATTTTTTCC+TGG | + | chr1_2:43317950-43317969 | Msa0071410:intron | 40.0% |
| ACCTATCAGCTCTTAACTCT+TGG | + | chr1_2:43318290-43318309 | Msa0071410:CDS | 40.0% | |
| ACCAAGAGTTAAGAGCTGAT+AGG | - | chr1_2:43318294-43318313 | None:intergenic | 40.0% | |
| ! | CATTTAGAATAGAAGGGAGC+AGG | - | chr1_2:43318488-43318507 | None:intergenic | 40.0% |
| TAGTAAGGTGATAACCGCCA+TGG | - | chr1_2:43316525-43316544 | None:intergenic | 45.0% | |
| GGCGGTTATCACCTTACTAA+CGG | + | chr1_2:43316526-43316545 | Msa0071410:CDS | 45.0% | |
| GGTTATCACCTTACTAACGG+CGG | + | chr1_2:43316529-43316548 | Msa0071410:CDS | 45.0% | |
| !! | TTTCTAGCTTCAGCATACGC+CGG | + | chr1_2:43316566-43316585 | Msa0071410:CDS | 45.0% |
| ! | AGCGAGAGTCTAGAATCACA+CGG | - | chr1_2:43316722-43316741 | None:intergenic | 45.0% |
| AACGAGATCTCATCGACCTT+AGG | - | chr1_2:43316779-43316798 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | + | chr1_2:43317249-43317268 | Msa0071410:intron | 45.0% | |
| !! | GCAAGTGGATAATGGGAATG+TGG | - | chr1_2:43317640-43317659 | None:intergenic | 45.0% |
| GTTCCGTAATTGAGCACGAA+AGG | + | chr1_2:43317711-43317730 | Msa0071410:intron | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | + | chr1_2:43317857-43317876 | Msa0071410:CDS | 45.0% | |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | + | chr1_2:43318113-43318132 | Msa0071410:CDS | 45.0% |
| TGGGTCTTGCAACTAGAAGT+TGG | - | chr1_2:43318211-43318230 | None:intergenic | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | + | chr1_2:43318214-43318233 | Msa0071410:CDS | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | - | chr1_2:43318230-43318249 | None:intergenic | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | - | chr1_2:43318231-43318250 | None:intergenic | 45.0% | |
| TAGAATAGAAGGGAGCAGGT+GGG | - | chr1_2:43318484-43318503 | None:intergenic | 45.0% | |
| TTAGAATAGAAGGGAGCAGG+TGG | - | chr1_2:43318485-43318504 | None:intergenic | 45.0% | |
| TAGTAAGGTGATAACCGCCA+TGG | - | chr1_2:43316525-43316544 | None:intergenic | 45.0% | |
| GGCGGTTATCACCTTACTAA+CGG | + | chr1_2:43316526-43316545 | Msa0071410:CDS | 45.0% | |
| GGTTATCACCTTACTAACGG+CGG | + | chr1_2:43316529-43316548 | Msa0071410:CDS | 45.0% | |
| !! | TTTCTAGCTTCAGCATACGC+CGG | + | chr1_2:43316566-43316585 | Msa0071410:CDS | 45.0% |
| ! | AGCGAGAGTCTAGAATCACA+CGG | - | chr1_2:43316722-43316741 | None:intergenic | 45.0% |
| AACGAGATCTCATCGACCTT+AGG | - | chr1_2:43316779-43316798 | None:intergenic | 45.0% | |
| CGCTATAGCACAGTGGAATT+TGG | + | chr1_2:43317249-43317268 | Msa0071410:intron | 45.0% | |
| !! | GCAAGTGGATAATGGGAATG+TGG | - | chr1_2:43317640-43317659 | None:intergenic | 45.0% |
| GTTCCGTAATTGAGCACGAA+AGG | + | chr1_2:43317711-43317730 | Msa0071410:intron | 45.0% | |
| GGCTATATGGTTGCATTTGC+TGG | + | chr1_2:43317857-43317876 | Msa0071410:CDS | 45.0% | |
| ! | GCAGGCTGCAAAATTTGTTC+TGG | + | chr1_2:43318113-43318132 | Msa0071410:CDS | 45.0% |
| TGGGTCTTGCAACTAGAAGT+TGG | - | chr1_2:43318211-43318230 | None:intergenic | 45.0% | |
| TCTAGTTGCAAGACCCATTC+AGG | + | chr1_2:43318214-43318233 | Msa0071410:CDS | 45.0% | |
| GCAATCCACAGTTCCTGAAT+GGG | - | chr1_2:43318230-43318249 | None:intergenic | 45.0% | |
| TGCAATCCACAGTTCCTGAA+TGG | - | chr1_2:43318231-43318250 | None:intergenic | 45.0% | |
| TAGAATAGAAGGGAGCAGGT+GGG | - | chr1_2:43318484-43318503 | None:intergenic | 45.0% | |
| TTAGAATAGAAGGGAGCAGG+TGG | - | chr1_2:43318485-43318504 | None:intergenic | 45.0% | |
| CTTACTAACGGCGGCAATCA+CGG | + | chr1_2:43316538-43316557 | Msa0071410:CDS | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | + | chr1_2:43316635-43316654 | Msa0071410:CDS | 50.0% |
| CAATCCCAACGTGAATCCGT+CGG | - | chr1_2:43316642-43316661 | None:intergenic | 50.0% | |
| AAAAGAACGAACCGCGACGA+AGG | - | chr1_2:43316822-43316841 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | + | chr1_2:43317242-43317261 | Msa0071410:intron | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | + | chr1_2:43317324-43317343 | Msa0071410:intron | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | - | chr1_2:43317655-43317674 | None:intergenic | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | + | chr1_2:43317826-43317845 | Msa0071410:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | + | chr1_2:43317836-43317855 | Msa0071410:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | - | chr1_2:43317847-43317866 | None:intergenic | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | + | chr1_2:43317844-43317863 | Msa0071410:intron | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | + | chr1_2:43318174-43318193 | Msa0071410:CDS | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | + | chr1_2:43318222-43318241 | Msa0071410:CDS | 50.0% | |
| ! | GGAACTGTGGATTGCAGCTT+AGG | + | chr1_2:43318235-43318254 | Msa0071410:CDS | 50.0% |
| CTTCGCCAGTATTCGCTCTA+CGG | + | chr1_2:43318328-43318347 | Msa0071410:CDS | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | - | chr1_2:43318336-43318355 | None:intergenic | 50.0% | |
| CTTACTAACGGCGGCAATCA+CGG | + | chr1_2:43316538-43316557 | Msa0071410:CDS | 50.0% | |
| ! | AGATCCGACGGATTCACGTT+GGG | + | chr1_2:43316635-43316654 | Msa0071410:CDS | 50.0% |
| CAATCCCAACGTGAATCCGT+CGG | - | chr1_2:43316642-43316661 | None:intergenic | 50.0% | |
| AAAAGAACGAACCGCGACGA+AGG | - | chr1_2:43316822-43316841 | None:intergenic | 50.0% | |
| GTTCTACCGCTATAGCACAG+TGG | + | chr1_2:43317242-43317261 | Msa0071410:intron | 50.0% | |
| GATTAGACTTGTCCCGGTGT+CGG | + | chr1_2:43317324-43317343 | Msa0071410:intron | 50.0% | |
| GCAATGCCTTTCCTAGCAAG+TGG | - | chr1_2:43317655-43317674 | None:intergenic | 50.0% | |
| TGTGTGTTCGTCGTTGTTCC+AGG | + | chr1_2:43317826-43317845 | Msa0071410:intron | 50.0% | |
| TCGTTGTTCCAGGACTCGTA+TGG | + | chr1_2:43317836-43317855 | Msa0071410:intron | 50.0% | |
| CCATATAGCCATACGAGTCC+TGG | - | chr1_2:43317847-43317866 | None:intergenic | 50.0% | |
| CCAGGACTCGTATGGCTATA+TGG | + | chr1_2:43317844-43317863 | Msa0071410:intron | 50.0% | |
| AGCTGTCTGTCTTAACGGTC+AGG | + | chr1_2:43318174-43318193 | Msa0071410:CDS | 50.0% | |
| CAAGACCCATTCAGGAACTG+TGG | + | chr1_2:43318222-43318241 | Msa0071410:CDS | 50.0% | |
| ! | GGAACTGTGGATTGCAGCTT+AGG | + | chr1_2:43318235-43318254 | Msa0071410:CDS | 50.0% |
| CTTCGCCAGTATTCGCTCTA+CGG | + | chr1_2:43318328-43318347 | Msa0071410:CDS | 50.0% | |
| AAAGGCCGTAGAGCGAATAC+TGG | - | chr1_2:43318336-43318355 | None:intergenic | 50.0% | |
| CGTGATTGCCGCCGTTAGTA+AGG | - | chr1_2:43316540-43316559 | None:intergenic | 55.0% | |
| ACGTGAATCCGTCGGATCTC+TGG | - | chr1_2:43316634-43316653 | None:intergenic | 55.0% | |
| ! | GAGATCCGACGGATTCACGT+TGG | + | chr1_2:43316634-43316653 | Msa0071410:CDS | 55.0% |
| ! | CGACGGATTCACGTTGGGAT+TGG | + | chr1_2:43316640-43316659 | Msa0071410:CDS | 55.0% |
| TCGCGTCAGCGTCACAACAA+CGG | - | chr1_2:43317280-43317299 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | - | chr1_2:43318330-43318349 | None:intergenic | 55.0% | |
| CGTGATTGCCGCCGTTAGTA+AGG | - | chr1_2:43316540-43316559 | None:intergenic | 55.0% | |
| ACGTGAATCCGTCGGATCTC+TGG | - | chr1_2:43316634-43316653 | None:intergenic | 55.0% | |
| ! | GAGATCCGACGGATTCACGT+TGG | + | chr1_2:43316634-43316653 | Msa0071410:CDS | 55.0% |
| ! | CGACGGATTCACGTTGGGAT+TGG | + | chr1_2:43316640-43316659 | Msa0071410:CDS | 55.0% |
| TCGCGTCAGCGTCACAACAA+CGG | - | chr1_2:43317280-43317299 | None:intergenic | 55.0% | |
| CGTAGAGCGAATACTGGCGA+AGG | - | chr1_2:43318330-43318349 | None:intergenic | 55.0% | |
| ACTAACGGCGGCAATCACGG+CGG | + | chr1_2:43316541-43316560 | Msa0071410:CDS | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | - | chr1_2:43316614-43316633 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | + | chr1_2:43316623-43316642 | Msa0071410:CDS | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | + | chr1_2:43316655-43316674 | Msa0071410:CDS | 60.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1_2:43317340-43317359 | None:intergenic | 60.0% | |
| ACTAACGGCGGCAATCACGG+CGG | + | chr1_2:43316541-43316560 | Msa0071410:CDS | 60.0% | |
| TGGACGCGTGTGTCTGTGCA+AGG | - | chr1_2:43316614-43316633 | None:intergenic | 60.0% | |
| ACACGCGTCCAGAGATCCGA+CGG | + | chr1_2:43316623-43316642 | Msa0071410:CDS | 60.0% | |
| ! | GGGATTGGCGTTCGCTTCGA+AGG | + | chr1_2:43316655-43316674 | Msa0071410:CDS | 60.0% |
| ACACGACACGTGTCCGACAC+CGG | - | chr1_2:43317340-43317359 | None:intergenic | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1_2:43317339-43317358 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1_2:43317339-43317358 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43316366 | 43318672 | 43316366 | ID=Msa0071410;Name=Msa0071410 |
| chr1_2 | mRNA | 43316366 | 43318672 | 43316366 | ID=Msa0071410-mRNA-1;Parent=Msa0071410;Name=Msa0071410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=158|1|1|1|1|1|3|267|240 |
| chr1_2 | exon | 43316366 | 43316829 | 43316366 | ID=Msa0071410-mRNA-1:exon:13054;Parent=Msa0071410-mRNA-1 |
| chr1_2 | exon | 43317848 | 43317952 | 43317848 | ID=Msa0071410-mRNA-1:exon:13055;Parent=Msa0071410-mRNA-1 |
| chr1_2 | exon | 43318094 | 43318672 | 43318094 | ID=Msa0071410-mRNA-1:exon:13056;Parent=Msa0071410-mRNA-1 |
| chr1_2 | five_prime_UTR | 43316366 | 43316523 | 43316366 | ID=Msa0071410-mRNA-1:five_prime_utr;Parent=Msa0071410-mRNA-1 |
| chr1_2 | CDS | 43316524 | 43316829 | 43316524 | ID=Msa0071410-mRNA-1:cds;Parent=Msa0071410-mRNA-1 |
| chr1_2 | CDS | 43317848 | 43317952 | 43317848 | ID=Msa0071410-mRNA-1:cds;Parent=Msa0071410-mRNA-1 |
| chr1_2 | CDS | 43318094 | 43318405 | 43318094 | ID=Msa0071410-mRNA-1:cds;Parent=Msa0071410-mRNA-1 |
| chr1_2 | three_prime_UTR | 43318406 | 43318672 | 43318406 | ID=Msa0071410-mRNA-1:three_prime_utr;Parent=Msa0071410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
