Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120840 | XP_013468069.1 | 99.187 | 369 | 3 | 0 | 1 | 369 | 1 | 369 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120840 | sp|Q9LDR4|ERG24_ARATH | 77.507 | 369 | 83 | 0 | 1 | 369 | 1 | 369 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120840 | A0A072VKE7 | 99.187 | 369 | 3 | 0 | 1 | 369 | 1 | 369 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa0120840 | 0.836656 | 8.234153e-57 | -8.615850e-47 |
| Msa0120840 | Msa0442830 | 0.829969 | 3.821863e-55 | -8.615850e-47 |
| Msa0120840 | Msa1037640 | 0.801165 | 1.024150e-48 | -8.615850e-47 |
| Msa0120840 | Msa1130280 | 0.839579 | 1.455968e-57 | -8.615850e-47 |
| Msa0120840 | Msa1369550 | 0.805265 | 1.450748e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120840 | MtrunA17_Chr1g0179361 | 99.187 | 369 | 3 | 0 | 1 | 369 | 1 | 369 | 0.0 | 737 |
| Msa0120840 | MtrunA17_Chr4g0051521 | 30.446 | 381 | 232 | 11 | 12 | 369 | 68 | 438 | 5.78e-45 | 160 |
| Msa0120840 | MtrunA17_Chr4g0000371 | 31.731 | 312 | 188 | 8 | 77 | 369 | 10 | 315 | 8.30e-42 | 148 |
| Msa0120840 | MtrunA17_Chr4g0051511 | 26.299 | 308 | 170 | 9 | 77 | 348 | 10 | 296 | 2.74e-22 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120840 | AT3G52940.1 | 77.507 | 369 | 83 | 0 | 1 | 369 | 1 | 369 | 0.0 | 581 |
| Msa0120840 | AT3G52940.2 | 69.136 | 243 | 75 | 0 | 1 | 243 | 1 | 243 | 1.20e-111 | 327 |
| Msa0120840 | AT1G50430.1 | 29.381 | 388 | 242 | 9 | 7 | 369 | 52 | 432 | 4.61e-44 | 157 |
| Msa0120840 | AT1G50430.2 | 28.646 | 384 | 249 | 8 | 7 | 369 | 52 | 431 | 6.42e-43 | 154 |
Find 87 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCACACTTTGATGTAAA+TGG | 0.137710 | 1_3:+46050578 | Msa0120840:three_prime_UTR |
| TTCTGTTGGTTGGACTTCTT+TGG | 0.188039 | 1_3:+46045430 | Msa0120840:CDS |
| AGCTTGCCTCCAATGACTTT+TGG | 0.234200 | 1_3:-46049588 | None:intergenic |
| AATTGCTTCGTCTTCCTTAT+TGG | 0.251594 | 1_3:+46049318 | Msa0120840:CDS |
| CTGGGCTTCATGTTAGTCTT+TGG | 0.257142 | 1_3:+46048519 | Msa0120840:CDS |
| AGCTACTTGCGTCTGGTTAT+TGG | 0.265834 | 1_3:+46049607 | Msa0120840:CDS |
| ATTGCTTCGTCTTCCTTATT+GGG | 0.280675 | 1_3:+46049319 | Msa0120840:CDS |
| AACAGAATAAGAAGATAAAT+TGG | 0.292026 | 1_3:-46050410 | None:intergenic |
| ATCTTCTTATTCTGTTAATC+TGG | 0.292907 | 1_3:+46050417 | Msa0120840:CDS |
| ACCTGTATGCTAAAAGTAAA+AGG | 0.303182 | 1_3:-46048558 | None:intergenic |
| TATGGTTAAGTTACCCAATA+AGG | 0.318227 | 1_3:-46049332 | None:intergenic |
| CTGTTCTTAGTGTTTGTATT+AGG | 0.318375 | 1_3:+46050629 | Msa0120840:three_prime_UTR |
| CTCCCTGGAAAACTTGTTCC+TGG | 0.318819 | 1_3:+46045264 | Msa0120840:CDS |
| AGATGGCAATTAGTTCCTTT+TGG | 0.334808 | 1_3:+46050745 | Msa0120840:three_prime_UTR |
| AGAATCCAAAGGCTCCTATA+TGG | 0.336752 | 1_3:+46049556 | Msa0120840:CDS |
| TTTACTTACTTAGCCATTGT+TGG | 0.353187 | 1_3:+46045234 | Msa0120840:CDS |
| TTAGCTTACCTTGTGGCATC+AGG | 0.372157 | 1_3:+46050262 | Msa0120840:CDS |
| TTACCCCATATAGGAGCCTT+TGG | 0.372968 | 1_3:-46049561 | None:intergenic |
| TAGATAATCTTAATTAGTTA+TGG | 0.379832 | 1_3:+46050718 | Msa0120840:three_prime_UTR |
| TCTTCCCTTTAATAAACATA+AGG | 0.381061 | 1_3:-46050527 | None:intergenic |
| TAATTAGTTATGGAGTTAGA+TGG | 0.385118 | 1_3:+46050728 | Msa0120840:three_prime_UTR |
| GGACATAATTGCAGAGAGAC+TGG | 0.385924 | 1_3:+46048500 | Msa0120840:CDS |
| AGATAAATTGGATAGAAGTA+TGG | 0.390555 | 1_3:-46050398 | None:intergenic |
| CAGAGAAGTATAGAGATATA+TGG | 0.390904 | 1_3:+46050468 | Msa0120840:CDS |
| TTTGCCTTATGTTTATTAAA+GGG | 0.395799 | 1_3:+46050523 | Msa0120840:exon |
| TACCACACTTTGATGTAAAT+GGG | 0.400785 | 1_3:+46050579 | Msa0120840:three_prime_UTR |
| ACAACTAAATCCTCAGTTCA+TGG | 0.413367 | 1_3:+46047436 | Msa0120840:CDS |
| AGATTACTGCATTGAATAGC+TGG | 0.418780 | 1_3:-46047760 | None:intergenic |
| TGTGGTAAATGAGAGATTAA+TGG | 0.419106 | 1_3:-46050563 | None:intergenic |
| TTTACTTCGTGACTTGCAAC+CGG | 0.420405 | 1_3:-46046562 | None:intergenic |
| CAACATACCAATCATGTATC+AGG | 0.431618 | 1_3:-46046617 | None:intergenic |
| GAATCCAAAGGCTCCTATAT+GGG | 0.442035 | 1_3:+46049557 | Msa0120840:CDS |
| CATAGTATCACACATGGATC+TGG | 0.449229 | 1_3:+46045052 | Msa0120840:exon |
| GTTAGGGCTGGTGGCTCTTG+AGG | 0.457091 | 1_3:+46049259 | Msa0120840:intron |
| TTTGGAGGATTACCCCATAT+AGG | 0.459369 | 1_3:-46049570 | None:intergenic |
| GGAGGCAAGCTACTTGCGTC+TGG | 0.469341 | 1_3:+46049600 | Msa0120840:CDS |
| CTTCGTTAGAGCTGGAATGA+TGG | 0.474076 | 1_3:+46047661 | Msa0120840:CDS |
| GAACAGAACGTGTATGCATT+GGG | 0.480241 | 1_3:-46050612 | None:intergenic |
| ATTGGATAGAAGTATGGAAC+TGG | 0.481994 | 1_3:-46050392 | None:intergenic |
| TTCGTTAGAGCTGGAATGAT+GGG | 0.485811 | 1_3:+46047662 | Msa0120840:CDS |
| TGAATTTCTGTTAGGGCTGG+TGG | 0.486884 | 1_3:+46049250 | Msa0120840:intron |
| ATCAGATAGTATATGCCAAA+AGG | 0.487648 | 1_3:-46050760 | None:intergenic |
| CTCAAGTCCTCTATCTGCTA+TGG | 0.491143 | 1_3:-46046004 | None:intergenic |
| TATCTATCAGATAAACAAGT+TGG | 0.497641 | 1_3:-46050701 | None:intergenic |
| GGTAATCCTCCAAAAGTCAT+TGG | 0.501425 | 1_3:+46049579 | Msa0120840:CDS |
| GAGCAAGCAGCAAGTCCCCT+AGG | 0.501490 | 1_3:-46050233 | None:intergenic |
| TGTTAATCTGGAGAGAAAGA+AGG | 0.514732 | 1_3:+46050429 | Msa0120840:CDS |
| CTAGACACTGTAACTACCTA+GGG | 0.515200 | 1_3:+46050217 | Msa0120840:CDS |
| AGGAGATACAAATTCCATCT+TGG | 0.520246 | 1_3:-46045460 | None:intergenic |
| AGAACAGAACGTGTATGCAT+TGG | 0.520934 | 1_3:-46050613 | None:intergenic |
| GTGGAGACCTGATACATGAT+TGG | 0.521159 | 1_3:+46046610 | Msa0120840:CDS |
| CGTCTTCATTATCGCTGCAA+TGG | 0.528597 | 1_3:+46045309 | Msa0120840:CDS |
| GGTCAGGTTGCTTTACTCGC+GGG | 0.534389 | 1_3:+46045207 | Msa0120840:intron |
| TTTGTTCCAGCTATACATCC+TGG | 0.535536 | 1_3:+46047859 | Msa0120840:intron |
| GGTTGCAAGTCACGAAGTAA+AGG | 0.537005 | 1_3:+46046564 | Msa0120840:CDS |
| GAACTAACGGAGTTCCATGA+TGG | 0.541770 | 1_3:-46045098 | None:intergenic |
| ATTGTTGGATCCATTCTCCC+TGG | 0.544374 | 1_3:+46045249 | Msa0120840:CDS |
| TTCACGCTCTAATTCCATCA+TGG | 0.548482 | 1_3:+46045084 | Msa0120840:CDS |
| TTGGCATATACTATCTGATA+CGG | 0.550571 | 1_3:+46050764 | Msa0120840:three_prime_UTR |
| TCTTTGGATCAGTGCCAAGA+TGG | 0.550638 | 1_3:+46045446 | Msa0120840:CDS |
| TGCAGATACATGGTATTTCG+AGG | 0.551488 | 1_3:+46049504 | Msa0120840:intron |
| TTGCAGGCCATAGCAGATAG+AGG | 0.552413 | 1_3:+46045997 | Msa0120840:intron |
| AGTATCGTAAACTTGTTCCA+TGG | 0.557684 | 1_3:+46050495 | Msa0120840:CDS |
| GGGTCAGGTTGCTTTACTCG+CGG | 0.558732 | 1_3:+46045206 | Msa0120840:intron |
| CAACTAAATCCTCAGTTCAT+GGG | 0.563695 | 1_3:+46047437 | Msa0120840:CDS |
| GACATAATTGCAGAGAGACT+GGG | 0.564561 | 1_3:+46048501 | Msa0120840:CDS |
| AAAATATAACTGCAGATACA+TGG | 0.564571 | 1_3:+46049494 | Msa0120840:intron |
| GTTAATCTGGAGAGAAAGAA+GGG | 0.564734 | 1_3:+46050430 | Msa0120840:CDS |
| GCTAGACACTGTAACTACCT+AGG | 0.566382 | 1_3:+46050216 | Msa0120840:CDS |
| ACATAAGGCAAAATTCTCCA+TGG | 0.574262 | 1_3:-46050512 | None:intergenic |
| CTTCGTGTACAAAGTAGTCC+AGG | 0.580566 | 1_3:-46047877 | None:intergenic |
| TAGTCTTTGGAGATCTAGTG+TGG | 0.584019 | 1_3:+46048532 | Msa0120840:CDS |
| CTTGCTAAGAGCATTCAAGA+TGG | 0.591306 | 1_3:+46047710 | Msa0120840:CDS |
| AATCCAAAGGCTCCTATATG+GGG | 0.603817 | 1_3:+46049558 | Msa0120840:CDS |
| AATCCTCCAAAAGTCATTGG+AGG | 0.607410 | 1_3:+46049582 | Msa0120840:CDS |
| TCACTAAAACGTCATATCAG+TGG | 0.629002 | 1_3:+46046591 | Msa0120840:CDS |
| TTAGAGCTGGAATGATGGGA+TGG | 0.630099 | 1_3:+46047666 | Msa0120840:CDS |
| CTGGTGGCTCTTGAGGAACA+AGG | 0.634587 | 1_3:+46049266 | Msa0120840:CDS |
| AGGGAGAATGGATCCAACAA+TGG | 0.644188 | 1_3:-46045247 | None:intergenic |
| GAATCAGAGAGAACAACACC+AGG | 0.654584 | 1_3:-46045282 | None:intergenic |
| AACCCATTTACATCAAAGTG+TGG | 0.657087 | 1_3:-46050581 | None:intergenic |
| AACAAGTTGGTAAACAAACA+TGG | 0.660547 | 1_3:-46050688 | None:intergenic |
| AGAGATCACCTGATGCCACA+AGG | 0.665070 | 1_3:-46050270 | None:intergenic |
| TGATTTCAAGAAGAATCCAA+AGG | 0.679451 | 1_3:+46049545 | Msa0120840:CDS |
| AAACTGCATAGTATCACACA+TGG | 0.688567 | 1_3:+46045046 | Msa0120840:exon |
| AGGTCAATACCCATGAACTG+AGG | 0.703276 | 1_3:-46047446 | None:intergenic |
| TAGACACTGTAACTACCTAG+GGG | 0.778605 | 1_3:+46050218 | Msa0120840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGTTACTAAATTAAT+TGG | - | chr1_3:46048993-46049012 | None:intergenic | 10.0% |
| !!! | TATTATCATTATTTTGTTAA+AGG | + | chr1_3:46050187-46050206 | Msa0120840:intron | 10.0% |
| !!! | ATTATCATTATTTTGTTAAA+GGG | + | chr1_3:46050188-46050207 | Msa0120840:intron | 10.0% |
| !! | AATCAATGAATTAAAGAAAT+GGG | - | chr1_3:46045137-46045156 | None:intergenic | 15.0% |
| !! | AAATCAATGAATTAAAGAAA+TGG | - | chr1_3:46045138-46045157 | None:intergenic | 15.0% |
| !!! | ACTTTATTTGCATTTTTTTA+AGG | + | chr1_3:46045393-46045412 | Msa0120840:intron | 15.0% |
| !!! | CATTTTTTTCAAATTTGAAT+CGG | - | chr1_3:46045635-46045654 | None:intergenic | 15.0% |
| !!! | TGTTTTATTTTTATCATTCT+AGG | + | chr1_3:46046473-46046492 | Msa0120840:intron | 15.0% |
| !!! | ATATAAACACAATTTTTTCA+GGG | - | chr1_3:46047362-46047381 | None:intergenic | 15.0% |
| !!! | TATATAAACACAATTTTTTC+AGG | - | chr1_3:46047363-46047382 | None:intergenic | 15.0% |
| !! | TTTAGAAAAAAAATCAACTT+AGG | + | chr1_3:46048079-46048098 | Msa0120840:intron | 15.0% |
| !!! | TGAAAGGATTTTAATAATTA+AGG | + | chr1_3:46048812-46048831 | Msa0120840:intron | 15.0% |
| !! | TTTAATAATTAAGGTTCATA+AGG | + | chr1_3:46048821-46048840 | Msa0120840:intron | 15.0% |
| !! | TAATTTAGTAACTAAATACT+CGG | + | chr1_3:46048995-46049014 | Msa0120840:intron | 15.0% |
| !!! | AAATTCATTTTTACAATCTA+TGG | - | chr1_3:46049353-46049372 | None:intergenic | 15.0% |
| !!! | TTGGAAAATATGATTTTTTA+AGG | + | chr1_3:46049938-46049957 | Msa0120840:intron | 15.0% |
| !!! | TTATCATTATTTTGTTAAAG+GGG | + | chr1_3:46050189-46050208 | Msa0120840:intron | 15.0% |
| !! | TAGATAATCTTAATTAGTTA+TGG | + | chr1_3:46050718-46050737 | Msa0120840:three_prime_UTR | 15.0% |
| !!! | TATGAAATTGATGATTGAAT+TGG | - | chr1_3:46045164-46045183 | None:intergenic | 20.0% |
| !!! | TTTTTGCATTTTTTGAATCT+GGG | + | chr1_3:46045186-46045205 | Msa0120840:intron | 20.0% |
| !! | CAATTTCTTCTATTAAGATT+CGG | + | chr1_3:46045775-46045794 | Msa0120840:intron | 20.0% |
| !! | AATTTCTTCTATTAAGATTC+GGG | + | chr1_3:46045776-46045795 | Msa0120840:intron | 20.0% |
| !!! | AGACTTTTTATATAGAATTG+TGG | - | chr1_3:46046219-46046238 | None:intergenic | 20.0% |
| !! | ATTGAACAGTTCAATTAAAA+GGG | - | chr1_3:46046332-46046351 | None:intergenic | 20.0% |
| !! | TCTTGCAAATATGAATAAAA+TGG | + | chr1_3:46046432-46046451 | Msa0120840:intron | 20.0% |
| !! | TTTAGTGGAAAAGTTATAAA+GGG | + | chr1_3:46046666-46046685 | Msa0120840:intron | 20.0% |
| !! | ATATTAAAATTGGAAAAGAG+AGG | - | chr1_3:46046774-46046793 | None:intergenic | 20.0% |
| !!! | ATAATGGAGCATATTAAAAT+TGG | - | chr1_3:46046784-46046803 | None:intergenic | 20.0% |
| !!! | GTTTAAATGAAGTATTAAGT+GGG | - | chr1_3:46046810-46046829 | None:intergenic | 20.0% |
| !!! | TAGTGAGAGAATTAATATTT+TGG | + | chr1_3:46046913-46046932 | Msa0120840:intron | 20.0% |
| !! | ATATTATGTCTATTAAGTGA+GGG | + | chr1_3:46047136-46047155 | Msa0120840:intron | 20.0% |
| !!! | GTTTTCCATTTTATTTTAAC+AGG | + | chr1_3:46047402-46047421 | Msa0120840:intron | 20.0% |
| !! | CATCGTTATAAAACTTAAAT+AGG | - | chr1_3:46047995-46048014 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTAAAACTCATC+AGG | - | chr1_3:46048072-46048091 | None:intergenic | 20.0% |
| !! | AAAAAAAATCAACTTAGGTT+TGG | + | chr1_3:46048084-46048103 | Msa0120840:intron | 20.0% |
| !!! | TCTTTTTATAATTACGAACT+TGG | + | chr1_3:46048582-46048601 | Msa0120840:intron | 20.0% |
| !! | TTCTAAACTTATTAAGACTT+TGG | + | chr1_3:46048868-46048887 | Msa0120840:intron | 20.0% |
| !! | AAAAATAATGTCCAAGAAAT+TGG | + | chr1_3:46049066-46049085 | Msa0120840:intron | 20.0% |
| !! | AAAATAATGTCCAAGAAATT+GGG | + | chr1_3:46049067-46049086 | Msa0120840:intron | 20.0% |
| !!! | TATAATGCTATTTGAAAATG+AGG | - | chr1_3:46049132-46049151 | None:intergenic | 20.0% |
| !! | TTACAAGTTATATTAATTCC+AGG | - | chr1_3:46049729-46049748 | None:intergenic | 20.0% |
| !!! | GAATTAATATAACTTGTAAC+TGG | + | chr1_3:46049730-46049749 | Msa0120840:intron | 20.0% |
| !!! | TGTAACTGGAATTAATTTTT+AGG | + | chr1_3:46049744-46049763 | Msa0120840:intron | 20.0% |
| !!! | AATATCGAAATTCTAAAAAC+TGG | - | chr1_3:46049822-46049841 | None:intergenic | 20.0% |
| !! | ATTATTCAACTTGACATATA+AGG | - | chr1_3:46049876-46049895 | None:intergenic | 20.0% |
| !!! | AAATAAGAGTTTAACTTCAA+TGG | + | chr1_3:46049975-46049994 | Msa0120840:intron | 20.0% |
| !!! | ATTTTCAGATTTACAAATGA+AGG | + | chr1_3:46050037-46050056 | Msa0120840:intron | 20.0% |
| !!! | TTTTCAGATTTACAAATGAA+GGG | + | chr1_3:46050038-46050057 | Msa0120840:intron | 20.0% |
| !! | TCGGAATATTCATTATAAAA+CGG | - | chr1_3:46050359-46050378 | None:intergenic | 20.0% |
| !! | AACAGAATAAGAAGATAAAT+TGG | - | chr1_3:46050413-46050432 | None:intergenic | 20.0% |
| !!! | TTTTGCCTTATGTTTATTAA+AGG | + | chr1_3:46050522-46050541 | Msa0120840:CDS | 20.0% |
| !! | TTTGCCTTATGTTTATTAAA+GGG | + | chr1_3:46050523-46050542 | Msa0120840:exon | 20.0% |
| ! | TTGTAAGTAGTTTGAACTAA+CGG | - | chr1_3:46045114-46045133 | None:intergenic | 25.0% |
| !!! | CTTTTTGCATTTTTTGAATC+TGG | + | chr1_3:46045185-46045204 | Msa0120840:intron | 25.0% |
| !!! | TTTTTTCTTGTTCCTTAAGA+TGG | + | chr1_3:46045363-46045382 | Msa0120840:intron | 25.0% |
| !! | TTTTTCTTGTTCCTTAAGAT+GGG | + | chr1_3:46045364-46045383 | Msa0120840:intron | 25.0% |
| !!! | TTTATTTTCTCTTGTTCTGT+TGG | + | chr1_3:46045416-46045435 | Msa0120840:CDS | 25.0% |
| ! | AGTTAAGAATCTTGATATTG+TGG | + | chr1_3:46045830-46045849 | Msa0120840:intron | 25.0% |
| !!! | CCTCTAAAACTTTTATATTG+CGG | + | chr1_3:46045896-46045915 | Msa0120840:intron | 25.0% |
| ! | TTTATCTGCTTGTTTATTAC+TGG | + | chr1_3:46046082-46046101 | Msa0120840:intron | 25.0% |
| ! | CATTCTCAATTCTATTACAT+TGG | - | chr1_3:46046167-46046186 | None:intergenic | 25.0% |
| ! | TTTCTGAATCTTAGCTTATT+AGG | + | chr1_3:46046238-46046257 | Msa0120840:intron | 25.0% |
| ! | TAGTTAAATCAGTTAGAAGA+TGG | + | chr1_3:46046268-46046287 | Msa0120840:intron | 25.0% |
| ! | TTGAACAGTTCAATTAAAAG+GGG | - | chr1_3:46046331-46046350 | None:intergenic | 25.0% |
| ! | CATTGAACAGTTCAATTAAA+AGG | - | chr1_3:46046333-46046352 | None:intergenic | 25.0% |
| !! | TTTGTTGGTTATGTTCAAAA+CGG | - | chr1_3:46046360-46046379 | None:intergenic | 25.0% |
| !! | AAATCAGTGATTCTTTTTGT+TGG | - | chr1_3:46046375-46046394 | None:intergenic | 25.0% |
| ! | CTTTAGTGGAAAAGTTATAA+AGG | + | chr1_3:46046665-46046684 | Msa0120840:intron | 25.0% |
| ! | TATTATTTATGCTATCTCTC+TGG | - | chr1_3:46046718-46046737 | None:intergenic | 25.0% |
| !! | GGTTTAAATGAAGTATTAAG+TGG | - | chr1_3:46046811-46046830 | None:intergenic | 25.0% |
| !!! | TTCTCATTTTAAAATAGACG+AGG | - | chr1_3:46047045-46047064 | None:intergenic | 25.0% |
| ! | GATATTATGTCTATTAAGTG+AGG | + | chr1_3:46047135-46047154 | Msa0120840:intron | 25.0% |
| ! | GGAGATAAAATTATAGAACA+TGG | - | chr1_3:46047285-46047304 | None:intergenic | 25.0% |
| !! | TGTTCTATAATTTTATCTCC+TGG | + | chr1_3:46047285-46047304 | Msa0120840:intron | 25.0% |
| !! | GTTCTATAATTTTATCTCCT+GGG | + | chr1_3:46047286-46047305 | Msa0120840:intron | 25.0% |
| !!! | TTCCATTTTATTTTAACAGG+TGG | + | chr1_3:46047405-46047424 | Msa0120840:intron | 25.0% |
| ! | AACCACCTGTTAAAATAAAA+TGG | - | chr1_3:46047410-46047429 | None:intergenic | 25.0% |
| !!! | TTTTATTTTAACAGGTGGTT+TGG | + | chr1_3:46047410-46047429 | Msa0120840:intron | 25.0% |
| !! | AGACTAAATCAAGATTGTTT+TGG | + | chr1_3:46048143-46048162 | Msa0120840:intron | 25.0% |
| !!! | TTGGCTTGTATTTTATTTGA+CGG | + | chr1_3:46048246-46048265 | Msa0120840:intron | 25.0% |
| !!! | TTGTCATTGAATTCTAAGAT+GGG | - | chr1_3:46048380-46048399 | None:intergenic | 25.0% |
| !! | ATTGTCATTGAATTCTAAGA+TGG | - | chr1_3:46048381-46048400 | None:intergenic | 25.0% |
| ! | AAGGTAAATAAAACTTTGCA+AGG | - | chr1_3:46049188-46049207 | None:intergenic | 25.0% |
| ! | TAAGACGTAAAATAAAGTGA+AGG | - | chr1_3:46049207-46049226 | None:intergenic | 25.0% |
| ! | AAAATATAACTGCAGATACA+TGG | + | chr1_3:46049494-46049513 | Msa0120840:intron | 25.0% |
| !! | TGTTTTGTGGTTAAAAGAAT+AGG | + | chr1_3:46049686-46049705 | Msa0120840:intron | 25.0% |
| ! | TCATGAGTTAGTGAAAATAA+GGG | - | chr1_3:46049789-46049808 | None:intergenic | 25.0% |
| ! | ATCATGAGTTAGTGAAAATA+AGG | - | chr1_3:46049790-46049809 | None:intergenic | 25.0% |
| !!! | TCACTAGTTTTTGTAATTTC+AGG | - | chr1_3:46050012-46050031 | None:intergenic | 25.0% |
| ! | TTTCAGATTTACAAATGAAG+GGG | + | chr1_3:46050039-46050058 | Msa0120840:intron | 25.0% |
| ! | AGATAAATTGGATAGAAGTA+TGG | - | chr1_3:46050401-46050420 | None:intergenic | 25.0% |
| ! | ATCTTCTTATTCTGTTAATC+TGG | + | chr1_3:46050417-46050436 | Msa0120840:CDS | 25.0% |
| ! | TCTTCCCTTTAATAAACATA+AGG | - | chr1_3:46050530-46050549 | None:intergenic | 25.0% |
| ! | ATGTAACCAAAAAACAAATG+TGG | - | chr1_3:46050666-46050685 | None:intergenic | 25.0% |
| ! | TATCTATCAGATAAACAAGT+TGG | - | chr1_3:46050704-46050723 | None:intergenic | 25.0% |
| ! | TAATTAGTTATGGAGTTAGA+TGG | + | chr1_3:46050728-46050747 | Msa0120840:three_prime_UTR | 25.0% |
| TTTACTTACTTAGCCATTGT+TGG | + | chr1_3:46045234-46045253 | Msa0120840:CDS | 30.0% | |
| ! | TTTTCTTGTTCCTTAAGATG+GGG | + | chr1_3:46045365-46045384 | Msa0120840:intron | 30.0% |
| ATTATGCAAACACTTACAGT+AGG | - | chr1_3:46045483-46045502 | None:intergenic | 30.0% | |
| TGCATGATCAATTCATATAG+AGG | - | chr1_3:46045535-46045554 | None:intergenic | 30.0% | |
| AAGTTCATGAAATACAAGCA+AGG | + | chr1_3:46045576-46045595 | Msa0120840:intron | 30.0% | |
| GCATCAAAAGTCAAACTAAA+GGG | - | chr1_3:46045750-46045769 | None:intergenic | 30.0% | |
| TGCATCAAAAGTCAAACTAA+AGG | - | chr1_3:46045751-46045770 | None:intergenic | 30.0% | |
| GTGATTCTAAATTGTACTTG+CGG | + | chr1_3:46045798-46045817 | Msa0120840:intron | 30.0% | |
| !! | CCGCAATATAAAAGTTTTAG+AGG | - | chr1_3:46045899-46045918 | None:intergenic | 30.0% |
| !! | CTGCACTTAGTTCTAAATTA+TGG | - | chr1_3:46045941-46045960 | None:intergenic | 30.0% |
| CTCAATTCTATTACATTGGT+AGG | - | chr1_3:46046163-46046182 | None:intergenic | 30.0% | |
| !!! | GGTTAGTCTAAAGTTTTCTT+TGG | + | chr1_3:46046295-46046314 | Msa0120840:intron | 30.0% |
| AGTTCAATTAAAAGGGGTAA+AGG | - | chr1_3:46046325-46046344 | None:intergenic | 30.0% | |
| !! | CAAAAAGAATCACTGATTTC+TGG | + | chr1_3:46046376-46046395 | Msa0120840:intron | 30.0% |
| TATAACACAACTGAGATAGA+TGG | - | chr1_3:46046411-46046430 | None:intergenic | 30.0% | |
| ! | ATGACAATTTTCTTCCCTTT+GGG | + | chr1_3:46046500-46046519 | Msa0120840:intron | 30.0% |
| CCATTTATATACAACCCAAA+GGG | - | chr1_3:46046517-46046536 | None:intergenic | 30.0% | |
| TTAGCTGATTACTACTTTAG+TGG | + | chr1_3:46046651-46046670 | Msa0120840:intron | 30.0% | |
| AATTGGAAAAGAGAGGATAA+GGG | - | chr1_3:46046767-46046786 | None:intergenic | 30.0% | |
| AAATTGGAAAAGAGAGGATA+AGG | - | chr1_3:46046768-46046787 | None:intergenic | 30.0% | |
| AGTATTAAGTGGGAAGATAA+TGG | - | chr1_3:46046800-46046819 | None:intergenic | 30.0% | |
| TGTAGTATATAGCACACATA+CGG | - | chr1_3:46047018-46047037 | None:intergenic | 30.0% | |
| ! | TAGTAATGAAGTACTTCACT+TGG | + | chr1_3:46047235-46047254 | Msa0120840:intron | 30.0% |
| TTATGCTGCTATACATCTAA+CGG | + | chr1_3:46047617-46047636 | Msa0120840:intron | 30.0% | |
| TAATACTCTTCTAGTCACAA+AGG | - | chr1_3:46047933-46047952 | None:intergenic | 30.0% | |
| !! | TTTGTGACTAGAAGAGTATT+AGG | + | chr1_3:46047932-46047951 | Msa0120840:intron | 30.0% |
| TGCTCTTTAGATTTCATCAT+CGG | + | chr1_3:46047961-46047980 | Msa0120840:intron | 30.0% | |
| ! | ATCAGGTATTTTCTTTCCAT+TGG | - | chr1_3:46048055-46048074 | None:intergenic | 30.0% |
| !! | CTTAGGTTTGGAATTTTCTA+TGG | + | chr1_3:46048096-46048115 | Msa0120840:intron | 30.0% |
| ! | TCAAGTTTAAGACATCTCAA+CGG | - | chr1_3:46048172-46048191 | None:intergenic | 30.0% |
| TCTTAAACTTGAGTTATGTC+AGG | + | chr1_3:46048180-46048199 | Msa0120840:intron | 30.0% | |
| !! | TGGCTTGTATTTTATTTGAC+GGG | + | chr1_3:46048247-46048266 | Msa0120840:intron | 30.0% |
| TTGTATGTCATAGATGCATT+TGG | + | chr1_3:46048419-46048438 | Msa0120840:intron | 30.0% | |
| TGTATGTCATAGATGCATTT+GGG | + | chr1_3:46048420-46048439 | Msa0120840:intron | 30.0% | |
| ! | ATTTCTTGTCTTTTGCAGAT+GGG | + | chr1_3:46048479-46048498 | Msa0120840:intron | 30.0% |
| !! | TCCTTTTACTTTTAGCATAC+AGG | + | chr1_3:46048557-46048576 | Msa0120840:CDS | 30.0% |
| ACCTGTATGCTAAAAGTAAA+AGG | - | chr1_3:46048561-46048580 | None:intergenic | 30.0% | |
| TTGCAAAATAAATTGCAGGT+TGG | - | chr1_3:46048626-46048645 | None:intergenic | 30.0% | |
| AACAAGTAATCTCTCTTTCA+TGG | - | chr1_3:46048651-46048670 | None:intergenic | 30.0% | |
| TGGATAAGTGAATTAAAACG+CGG | - | chr1_3:46048714-46048733 | None:intergenic | 30.0% | |
| GAGAGATAAAGTAGATATGA+TGG | - | chr1_3:46048734-46048753 | None:intergenic | 30.0% | |
| TTGTTATGACTTATGAGTCA+GGG | - | chr1_3:46049160-46049179 | None:intergenic | 30.0% | |
| TGACAATCTGAATTTCTGTT+AGG | + | chr1_3:46049242-46049261 | Msa0120840:intron | 30.0% | |
| GACAATCTGAATTTCTGTTA+GGG | + | chr1_3:46049243-46049262 | Msa0120840:intron | 30.0% | |
| TATGGTTAAGTTACCCAATA+AGG | - | chr1_3:46049335-46049354 | None:intergenic | 30.0% | |
| TGATTTCAAGAAGAATCCAA+AGG | + | chr1_3:46049545-46049564 | Msa0120840:CDS | 30.0% | |
| ! | TTTAGGCTTAAATGCACTTT+TGG | + | chr1_3:46049761-46049780 | Msa0120840:intron | 30.0% |
| CATGAGTTAGTGAAAATAAG+GGG | - | chr1_3:46049788-46049807 | None:intergenic | 30.0% | |
| ! | TAAGAGTTTAACTTCAATGG+TGG | + | chr1_3:46049978-46049997 | Msa0120840:intron | 30.0% |
| ATCATTATCATCTGTCATCT+TGG | + | chr1_3:46050115-46050134 | Msa0120840:intron | 30.0% | |
| !! | TTATTGTTGCTGTTTCTCAT+TGG | + | chr1_3:46050160-46050179 | Msa0120840:intron | 30.0% |
| ! | CAGAGAAGTATAGAGATATA+TGG | + | chr1_3:46050468-46050487 | Msa0120840:CDS | 30.0% |
| TGTGGTAAATGAGAGATTAA+TGG | - | chr1_3:46050566-46050585 | None:intergenic | 30.0% | |
| TTACCACACTTTGATGTAAA+TGG | + | chr1_3:46050578-46050597 | Msa0120840:three_prime_UTR | 30.0% | |
| TACCACACTTTGATGTAAAT+GGG | + | chr1_3:46050579-46050598 | Msa0120840:three_prime_UTR | 30.0% | |
| CTGTTCTTAGTGTTTGTATT+AGG | + | chr1_3:46050629-46050648 | Msa0120840:three_prime_UTR | 30.0% | |
| !! | AACAAGTTGGTAAACAAACA+TGG | - | chr1_3:46050691-46050710 | None:intergenic | 30.0% |
| ATCAGATAGTATATGCCAAA+AGG | - | chr1_3:46050763-46050782 | None:intergenic | 30.0% | |
| TTGGCATATACTATCTGATA+CGG | + | chr1_3:46050764-46050783 | Msa0120840:three_prime_UTR | 30.0% | |
| ! | GTGATACTATGCAGTTTTCA+GGG | - | chr1_3:46045043-46045062 | None:intergenic | 35.0% |
| ! | TGTGATACTATGCAGTTTTC+AGG | - | chr1_3:46045044-46045063 | None:intergenic | 35.0% |
| AAACTGCATAGTATCACACA+TGG | + | chr1_3:46045046-46045065 | Msa0120840:exon | 35.0% | |
| AAAGTCAAATCCCCATCTTA+AGG | - | chr1_3:46045378-46045397 | None:intergenic | 35.0% | |
| ! | TTTTCTCTTGTTCTGTTGGT+TGG | + | chr1_3:46045420-46045439 | Msa0120840:CDS | 35.0% |
| AGGAGATACAAATTCCATCT+TGG | - | chr1_3:46045463-46045482 | None:intergenic | 35.0% | |
| ! | TTCAAATTTGAATCGGTGTC+CGG | - | chr1_3:46045628-46045647 | None:intergenic | 35.0% |
| TTTCTAATACAAGCTGTGTC+CGG | - | chr1_3:46045702-46045721 | None:intergenic | 35.0% | |
| ACAGCTTGTATTAGAAATGC+CGG | + | chr1_3:46045705-46045724 | Msa0120840:intron | 35.0% | |
| GCAAAATACAGACAAATGTG+TGG | + | chr1_3:46045852-46045871 | Msa0120840:intron | 35.0% | |
| CTAAGTGCAGAACTGAAATA+TGG | + | chr1_3:46045951-46045970 | Msa0120840:intron | 35.0% | |
| !!! | GCTGTTTTGATAATTCTTGC+AGG | + | chr1_3:46045981-46046000 | Msa0120840:intron | 35.0% |
| AATCAGTTAGAAGATGGTCA+AGG | + | chr1_3:46046274-46046293 | Msa0120840:intron | 35.0% | |
| ! | CATGACAATTTTCTTCCCTT+TGG | + | chr1_3:46046499-46046518 | Msa0120840:intron | 35.0% |
| !! | CCCTTTGGGTTGTATATAAA+TGG | + | chr1_3:46046514-46046533 | Msa0120840:intron | 35.0% |
| GCCATTTATATACAACCCAA+AGG | - | chr1_3:46046518-46046537 | None:intergenic | 35.0% | |
| ! | TTGGGTTGTATATAAATGGC+AGG | + | chr1_3:46046518-46046537 | Msa0120840:intron | 35.0% |
| ACCGGAAAAATAGAGTATGA+GGG | - | chr1_3:46046547-46046566 | None:intergenic | 35.0% | |
| AACCGGAAAAATAGAGTATG+AGG | - | chr1_3:46046548-46046567 | None:intergenic | 35.0% | |
| TCACTAAAACGTCATATCAG+TGG | + | chr1_3:46046591-46046610 | Msa0120840:CDS | 35.0% | |
| CAACATACCAATCATGTATC+AGG | - | chr1_3:46046620-46046639 | None:intergenic | 35.0% | |
| AGTTATAAAGGGCCAATGTT+TGG | + | chr1_3:46046677-46046696 | Msa0120840:intron | 35.0% | |
| TACCTACAACTTCCAAACAT+TGG | - | chr1_3:46046692-46046711 | None:intergenic | 35.0% | |
| ! | GAAGAATCGAGAAGCTTTTA+TGG | - | chr1_3:46046832-46046851 | None:intergenic | 35.0% |
| ! | TTCTCGATTCTTCCATTTTC+TGG | + | chr1_3:46046839-46046858 | Msa0120840:intron | 35.0% |
| ! | GAAGACAGCAAAATTTTGCA+GGG | - | chr1_3:46046874-46046893 | None:intergenic | 35.0% |
| ! | TGAAGACAGCAAAATTTTGC+AGG | - | chr1_3:46046875-46046894 | None:intergenic | 35.0% |
| CATAATTAAGCGCAAAAGCA+AGG | - | chr1_3:46046939-46046958 | None:intergenic | 35.0% | |
| ! | TATAATTTTATCTCCTGGGC+TGG | + | chr1_3:46047290-46047309 | Msa0120840:intron | 35.0% |
| ACAACTAAATCCTCAGTTCA+TGG | + | chr1_3:46047436-46047455 | Msa0120840:CDS | 35.0% | |
| CAACTAAATCCTCAGTTCAT+GGG | + | chr1_3:46047437-46047456 | Msa0120840:CDS | 35.0% | |
| ATGAATAGCTCACATACTTG+AGG | - | chr1_3:46047469-46047488 | None:intergenic | 35.0% | |
| AAAAATCGTCAGAACAAGCA+AGG | - | chr1_3:46047499-46047518 | None:intergenic | 35.0% | |
| CTCCATCAGCATAATTAAAG+AGG | + | chr1_3:46047572-46047591 | Msa0120840:intron | 35.0% | |
| CACCTCTTTAATTATGCTGA+TGG | - | chr1_3:46047577-46047596 | None:intergenic | 35.0% | |
| ! | AGATTTTTCTTCGTTAGAGC+TGG | + | chr1_3:46047653-46047672 | Msa0120840:intron | 35.0% |
| AGATTACTGCATTGAATAGC+TGG | - | chr1_3:46047763-46047782 | None:intergenic | 35.0% | |
| ATGTATAGCTGGAACAAATG+TGG | - | chr1_3:46047857-46047876 | None:intergenic | 35.0% | |
| AATCAGAATTCTTGCACCAA+TGG | + | chr1_3:46048036-46048055 | Msa0120840:intron | 35.0% | |
| !! | GGCTTGTATTTTATTTGACG+GGG | + | chr1_3:46048248-46048267 | Msa0120840:intron | 35.0% |
| !! | GCTTGTATTTTATTTGACGG+GGG | + | chr1_3:46048249-46048268 | Msa0120840:intron | 35.0% |
| GCGAAAAAATCCACAAGTAT+AGG | - | chr1_3:46048298-46048317 | None:intergenic | 35.0% | |
| !!! | ACTTGTGGATTTTTTCGCTA+TGG | + | chr1_3:46048300-46048319 | Msa0120840:intron | 35.0% |
| GTATGTCATAGATGCATTTG+GGG | + | chr1_3:46048421-46048440 | Msa0120840:intron | 35.0% | |
| TATGTCATAGATGCATTTGG+GGG | + | chr1_3:46048422-46048441 | Msa0120840:intron | 35.0% | |
| CATCTGCAAAAGACAAGAAA+TGG | - | chr1_3:46048480-46048499 | None:intergenic | 35.0% | |
| ! | CATTTCTTGTCTTTTGCAGA+TGG | + | chr1_3:46048478-46048497 | Msa0120840:intron | 35.0% |
| GGCTTTGCAAAATAAATTGC+AGG | - | chr1_3:46048630-46048649 | None:intergenic | 35.0% | |
| GGATAAGTGAATTAAAACGC+GGG | - | chr1_3:46048713-46048732 | None:intergenic | 35.0% | |
| TATGAGACATAGAAATGAGG+AGG | - | chr1_3:46048756-46048775 | None:intergenic | 35.0% | |
| AGGTATGAGACATAGAAATG+AGG | - | chr1_3:46048759-46048778 | None:intergenic | 35.0% | |
| TGTTATGACTTATGAGTCAG+GGG | - | chr1_3:46049159-46049178 | None:intergenic | 35.0% | |
| GTTGTTATGACTTATGAGTC+AGG | - | chr1_3:46049161-46049180 | None:intergenic | 35.0% | |
| AATTGCTTCGTCTTCCTTAT+TGG | + | chr1_3:46049318-46049337 | Msa0120840:CDS | 35.0% | |
| ATTGCTTCGTCTTCCTTATT+GGG | + | chr1_3:46049319-46049338 | Msa0120840:CDS | 35.0% | |
| ! | TTCCATCTTCACATGTTTTG+TGG | + | chr1_3:46049673-46049692 | Msa0120840:intron | 35.0% |
| AACCACAAAACATGTGAAGA+TGG | - | chr1_3:46049678-46049697 | None:intergenic | 35.0% | |
| GACATTAGACTTAGTTTACC+TGG | + | chr1_3:46049708-46049727 | Msa0120840:intron | 35.0% | |
| ATGAGTTGCAAAAAGCCAAA+AGG | + | chr1_3:46049894-46049913 | Msa0120840:intron | 35.0% | |
| ACATGACAATGCATATCTGT+TGG | + | chr1_3:46049919-46049938 | Msa0120840:intron | 35.0% | |
| ! | ATTGGATAGAAGTATGGAAC+TGG | - | chr1_3:46050395-46050414 | None:intergenic | 35.0% |
| TGTTAATCTGGAGAGAAAGA+AGG | + | chr1_3:46050429-46050448 | Msa0120840:CDS | 35.0% | |
| GTTAATCTGGAGAGAAAGAA+GGG | + | chr1_3:46050430-46050449 | Msa0120840:CDS | 35.0% | |
| ! | AGTATCGTAAACTTGTTCCA+TGG | + | chr1_3:46050495-46050514 | Msa0120840:CDS | 35.0% |
| ACATAAGGCAAAATTCTCCA+TGG | - | chr1_3:46050515-46050534 | None:intergenic | 35.0% | |
| AACCCATTTACATCAAAGTG+TGG | - | chr1_3:46050584-46050603 | None:intergenic | 35.0% | |
| !!! | TGCTGACCACATTTGTTTTT+TGG | + | chr1_3:46050657-46050676 | Msa0120840:three_prime_UTR | 35.0% |
| ! | AGATGGCAATTAGTTCCTTT+TGG | + | chr1_3:46050745-46050764 | Msa0120840:three_prime_UTR | 35.0% |
| CATAGTATCACACATGGATC+TGG | + | chr1_3:46045052-46045071 | Msa0120840:exon | 40.0% | |
| TTCACGCTCTAATTCCATCA+TGG | + | chr1_3:46045084-46045103 | Msa0120840:CDS | 40.0% | |
| !!! | GCATTTTTTGAATCTGGGTC+AGG | + | chr1_3:46045191-46045210 | Msa0120840:intron | 40.0% |
| ! | AACAAGTTTTCCAGGGAGAA+TGG | - | chr1_3:46045262-46045281 | None:intergenic | 40.0% |
| TTCATTATCGCTGCAATGGT+TGG | + | chr1_3:46045313-46045332 | Msa0120840:intron | 40.0% | |
| ! | TTCTGTTGGTTGGACTTCTT+TGG | + | chr1_3:46045430-46045449 | Msa0120840:CDS | 40.0% |
| GGTTGTATATAAATGGCAGG+TGG | + | chr1_3:46046521-46046540 | Msa0120840:intron | 40.0% | |
| !! | GCCCTCATACTCTATTTTTC+CGG | + | chr1_3:46046543-46046562 | Msa0120840:CDS | 40.0% |
| ! | TTTACTTCGTGACTTGCAAC+CGG | - | chr1_3:46046565-46046584 | None:intergenic | 40.0% |
| AAAAGAGAGGATAAGGGTCA+TGG | - | chr1_3:46046761-46046780 | None:intergenic | 40.0% | |
| ! | AAAATTTTGCAGGGAGCCAA+GGG | - | chr1_3:46046865-46046884 | None:intergenic | 40.0% |
| CTATGTGGACAAACTAGATG+AGG | + | chr1_3:46047182-46047201 | Msa0120840:intron | 40.0% | |
| AGTATGTGAGCTATTCATCG+TGG | + | chr1_3:46047471-46047490 | Msa0120840:intron | 40.0% | |
| TTCGTTAGAGCTGGAATGAT+GGG | + | chr1_3:46047662-46047681 | Msa0120840:CDS | 40.0% | |
| !! | CTTGCTAAGAGCATTCAAGA+TGG | + | chr1_3:46047710-46047729 | Msa0120840:CDS | 40.0% |
| TTTGTTCCAGCTATACATCC+TGG | + | chr1_3:46047859-46047878 | Msa0120840:intron | 40.0% | |
| ! | AAAGGTGTAACTCACTTACG+TGG | - | chr1_3:46047915-46047934 | None:intergenic | 40.0% |
| TCAACAAGTATGCTTGCAAG+TGG | + | chr1_3:46048223-46048242 | Msa0120840:intron | 40.0% | |
| !! | TGTATTTTATTTGACGGGGG+TGG | + | chr1_3:46048252-46048271 | Msa0120840:intron | 40.0% |
| ATGCATTACCTTTCTGCACT+AGG | + | chr1_3:46048344-46048363 | Msa0120840:intron | 40.0% | |
| TGCATTACCTTTCTGCACTA+GGG | + | chr1_3:46048345-46048364 | Msa0120840:intron | 40.0% | |
| ATGTCATAGATGCATTTGGG+GGG | + | chr1_3:46048423-46048442 | Msa0120840:intron | 40.0% | |
| GACATAATTGCAGAGAGACT+GGG | + | chr1_3:46048501-46048520 | Msa0120840:CDS | 40.0% | |
| ! | TAGTCTTTGGAGATCTAGTG+TGG | + | chr1_3:46048532-46048551 | Msa0120840:CDS | 40.0% |
| TCATACCTTCCTGATCCAAT+AGG | + | chr1_3:46048771-46048790 | Msa0120840:intron | 40.0% | |
| CTATTCCTATTGGATCAGGA+AGG | - | chr1_3:46048779-46048798 | None:intergenic | 40.0% | |
| CTTCCTGATCCAATAGGAAT+AGG | + | chr1_3:46048777-46048796 | Msa0120840:intron | 40.0% | |
| TCCAATAGGAATAGGTGCTT+AGG | + | chr1_3:46048785-46048804 | Msa0120840:intron | 40.0% | |
| CCAATAGGAATAGGTGCTTA+GGG | + | chr1_3:46048786-46048805 | Msa0120840:intron | 40.0% | |
| TAGGTGCTTAGGGAATTGAA+AGG | + | chr1_3:46048796-46048815 | Msa0120840:intron | 40.0% | |
| TAATGTCCAAGAAATTGGGC+TGG | + | chr1_3:46049071-46049090 | Msa0120840:intron | 40.0% | |
| AATGTCCAAGAAATTGGGCT+GGG | + | chr1_3:46049072-46049091 | Msa0120840:intron | 40.0% | |
| TATTTCCCAGCCCAATTTCT+TGG | - | chr1_3:46049080-46049099 | None:intergenic | 40.0% | |
| ATCTGAATTTCTGTTAGGGC+TGG | + | chr1_3:46049247-46049266 | Msa0120840:intron | 40.0% | |
| CTTTAAGTCGCCTAAGAAGT+GGG | - | chr1_3:46049390-46049409 | None:intergenic | 40.0% | |
| ACTTTAAGTCGCCTAAGAAG+TGG | - | chr1_3:46049391-46049410 | None:intergenic | 40.0% | |
| TGCAGATACATGGTATTTCG+AGG | + | chr1_3:46049504-46049523 | Msa0120840:intron | 40.0% | |
| AGAATCCAAAGGCTCCTATA+TGG | + | chr1_3:46049556-46049575 | Msa0120840:CDS | 40.0% | |
| GAATCCAAAGGCTCCTATAT+GGG | + | chr1_3:46049557-46049576 | Msa0120840:CDS | 40.0% | |
| AATCCAAAGGCTCCTATATG+GGG | + | chr1_3:46049558-46049577 | Msa0120840:CDS | 40.0% | |
| TTTGGAGGATTACCCCATAT+AGG | - | chr1_3:46049573-46049592 | None:intergenic | 40.0% | |
| GGTAATCCTCCAAAAGTCAT+TGG | + | chr1_3:46049579-46049598 | Msa0120840:CDS | 40.0% | |
| AATCCTCCAAAAGTCATTGG+AGG | + | chr1_3:46049582-46049601 | Msa0120840:CDS | 40.0% | |
| ! | TGCATTGTCATGTCACCTTT+TGG | - | chr1_3:46049912-46049931 | None:intergenic | 40.0% |
| ATCATCTGTCATCTTGGAGA+TGG | + | chr1_3:46050121-46050140 | Msa0120840:intron | 40.0% | |
| CTAGACACTGTAACTACCTA+GGG | + | chr1_3:46050217-46050236 | Msa0120840:CDS | 40.0% | |
| TAGACACTGTAACTACCTAG+GGG | + | chr1_3:46050218-46050237 | Msa0120840:CDS | 40.0% | |
| !!! | CTCTCTTTTAGCTTACCTTG+TGG | + | chr1_3:46050255-46050274 | Msa0120840:CDS | 40.0% |
| AACTGGTGAACTGCAACAAT+CGG | - | chr1_3:46050378-46050397 | None:intergenic | 40.0% | |
| GAACAGAACGTGTATGCATT+GGG | - | chr1_3:46050615-46050634 | None:intergenic | 40.0% | |
| AGAACAGAACGTGTATGCAT+TGG | - | chr1_3:46050616-46050635 | None:intergenic | 40.0% | |
| GAACTAACGGAGTTCCATGA+TGG | - | chr1_3:46045101-46045120 | None:intergenic | 45.0% | |
| AGGGAGAATGGATCCAACAA+TGG | - | chr1_3:46045250-46045269 | None:intergenic | 45.0% | |
| ATTGTTGGATCCATTCTCCC+TGG | + | chr1_3:46045249-46045268 | Msa0120840:CDS | 45.0% | |
| ! | CACCAGGAACAAGTTTTCCA+GGG | - | chr1_3:46045269-46045288 | None:intergenic | 45.0% |
| ! | ACACCAGGAACAAGTTTTCC+AGG | - | chr1_3:46045270-46045289 | None:intergenic | 45.0% |
| GAATCAGAGAGAACAACACC+AGG | - | chr1_3:46045285-46045304 | None:intergenic | 45.0% | |
| CGTCTTCATTATCGCTGCAA+TGG | + | chr1_3:46045309-46045328 | Msa0120840:CDS | 45.0% | |
| TCTTTGGATCAGTGCCAAGA+TGG | + | chr1_3:46045446-46045465 | Msa0120840:CDS | 45.0% | |
| ACATGTGTGAGTGTCTGTGT+CGG | + | chr1_3:46045673-46045692 | Msa0120840:intron | 45.0% | |
| TGCTATGCTCTTTGTAGCAC+CGG | - | chr1_3:46045727-46045746 | None:intergenic | 45.0% | |
| CTCAAGTCCTCTATCTGCTA+TGG | - | chr1_3:46046007-46046026 | None:intergenic | 45.0% | |
| GGTTGCAAGTCACGAAGTAA+AGG | + | chr1_3:46046564-46046583 | Msa0120840:CDS | 45.0% | |
| GTGGAGACCTGATACATGAT+TGG | + | chr1_3:46046610-46046629 | Msa0120840:CDS | 45.0% | |
| GGCCAATGTTTGGAAGTTGT+AGG | + | chr1_3:46046687-46046706 | Msa0120840:intron | 45.0% | |
| !! | TTCTTCCATTTTCTGGCCCT+TGG | + | chr1_3:46046846-46046865 | Msa0120840:intron | 45.0% |
| ! | CAAAATTTTGCAGGGAGCCA+AGG | - | chr1_3:46046866-46046885 | None:intergenic | 45.0% |
| ATAGACTGCGATGCACTATG+TGG | + | chr1_3:46047167-46047186 | Msa0120840:intron | 45.0% | |
| AGGTCAATACCCATGAACTG+AGG | - | chr1_3:46047449-46047468 | None:intergenic | 45.0% | |
| CTTCGTTAGAGCTGGAATGA+TGG | + | chr1_3:46047661-46047680 | Msa0120840:CDS | 45.0% | |
| ! | TTAGAGCTGGAATGATGGGA+TGG | + | chr1_3:46047666-46047685 | Msa0120840:CDS | 45.0% |
| AGTAGTCCAGGATGTATAGC+TGG | - | chr1_3:46047868-46047887 | None:intergenic | 45.0% | |
| CTTCGTGTACAAAGTAGTCC+AGG | - | chr1_3:46047880-46047899 | None:intergenic | 45.0% | |
| CAAGTATGCTTGCAAGTGGT+TGG | + | chr1_3:46048227-46048246 | Msa0120840:intron | 45.0% | |
| TTTGCAAGCGCCTATACTTG+TGG | + | chr1_3:46048285-46048304 | Msa0120840:intron | 45.0% | |
| GCATTACCTTTCTGCACTAG+GGG | + | chr1_3:46048346-46048365 | Msa0120840:intron | 45.0% | |
| ATTCTTCCCCTAGTGCAGAA+AGG | - | chr1_3:46048355-46048374 | None:intergenic | 45.0% | |
| TGTCATAGATGCATTTGGGG+GGG | + | chr1_3:46048424-46048443 | Msa0120840:intron | 45.0% | |
| GGACATAATTGCAGAGAGAC+TGG | + | chr1_3:46048500-46048519 | Msa0120840:CDS | 45.0% | |
| !! | CTGGGCTTCATGTTAGTCTT+TGG | + | chr1_3:46048519-46048538 | Msa0120840:CDS | 45.0% |
| GCACCTATTCCTATTGGATC+AGG | - | chr1_3:46048783-46048802 | None:intergenic | 45.0% | |
| CCCTAAGCACCTATTCCTAT+TGG | - | chr1_3:46048789-46048808 | None:intergenic | 45.0% | |
| TGAATTTCTGTTAGGGCTGG+TGG | + | chr1_3:46049250-46049269 | Msa0120840:intron | 45.0% | |
| TTACCCCATATAGGAGCCTT+TGG | - | chr1_3:46049564-46049583 | None:intergenic | 45.0% | |
| ! | TTGCCTCCAATGACTTTTGG+AGG | - | chr1_3:46049588-46049607 | None:intergenic | 45.0% |
| ! | AGCTTGCCTCCAATGACTTT+TGG | - | chr1_3:46049591-46049610 | None:intergenic | 45.0% |
| AGCTACTTGCGTCTGGTTAT+TGG | + | chr1_3:46049607-46049626 | Msa0120840:CDS | 45.0% | |
| GCTAGACACTGTAACTACCT+AGG | + | chr1_3:46050216-46050235 | Msa0120840:CDS | 45.0% | |
| TTAGCTTACCTTGTGGCATC+AGG | + | chr1_3:46050262-46050281 | Msa0120840:CDS | 45.0% | |
| !! | TAATGATAATATTAAATATT+GGG | - | chr1_3:46050102-46050121 | None:intergenic | 5.0% |
| !! | ATAATGATAATATTAAATAT+TGG | - | chr1_3:46050103-46050122 | None:intergenic | 5.0% |
| ! | CTCCCTGGAAAACTTGTTCC+TGG | + | chr1_3:46045264-46045283 | Msa0120840:CDS | 50.0% |
| TGAAGCAGTGACACAGACAC+CGG | + | chr1_3:46045606-46045625 | Msa0120840:intron | 50.0% | |
| TTGCAGGCCATAGCAGATAG+AGG | + | chr1_3:46045997-46046016 | Msa0120840:intron | 50.0% | |
| ATGCACCACACCCACTTCTT+AGG | + | chr1_3:46049377-46049396 | Msa0120840:intron | 50.0% | |
| AGAGATCACCTGATGCCACA+AGG | - | chr1_3:46050273-46050292 | None:intergenic | 50.0% | |
| ! | GGGTCAGGTTGCTTTACTCG+CGG | + | chr1_3:46045206-46045225 | Msa0120840:intron | 55.0% |
| ! | GGTCAGGTTGCTTTACTCGC+GGG | + | chr1_3:46045207-46045226 | Msa0120840:intron | 55.0% |
| TGAGTGTCTGTGTCGGACAC+CGG | + | chr1_3:46045680-46045699 | Msa0120840:intron | 55.0% | |
| TGCGGCTGCAATTGCAGTTG+TGG | + | chr1_3:46045914-46045933 | Msa0120840:intron | 55.0% | |
| GCGGCTGCAATTGCAGTTGT+GGG | + | chr1_3:46045915-46045934 | Msa0120840:intron | 55.0% | |
| ! | CTCCTGGGCTGGAAAAGTAC+TGG | + | chr1_3:46047301-46047320 | Msa0120840:intron | 55.0% |
| ! | AGCCAGTACTTTTCCAGCCC+AGG | - | chr1_3:46047306-46047325 | None:intergenic | 55.0% |
| CTGGTGGCTCTTGAGGAACA+AGG | + | chr1_3:46049266-46049285 | Msa0120840:CDS | 55.0% | |
| AGTCGCCTAAGAAGTGGGTG+TGG | - | chr1_3:46049385-46049404 | None:intergenic | 55.0% | |
| GGGAGCCAAGGGCCAGAAAA+TGG | - | chr1_3:46046854-46046873 | None:intergenic | 60.0% | |
| ! | GTTAGGGCTGGTGGCTCTTG+AGG | + | chr1_3:46049259-46049278 | Msa0120840:intron | 60.0% |
| GGAGGCAAGCTACTTGCGTC+TGG | + | chr1_3:46049600-46049619 | Msa0120840:CDS | 60.0% | |
| GAGCAAGCAGCAAGTCCCCT+AGG | - | chr1_3:46050236-46050255 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 46044963 | 46050788 | 46044963 | ID=Msa0120840;Name=Msa0120840 |
| chr1_3 | mRNA | 46044963 | 46050788 | 46044963 | ID=Msa0120840-mRNA-1;Parent=Msa0120840;Name=Msa0120840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=102|1|1|1|1|1|13|247|369 |
| chr1_3 | exon | 46044963 | 46045112 | 46044963 | ID=Msa0120840-mRNA-1:exon:13800;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46045213 | 46045330 | 46045213 | ID=Msa0120840-mRNA-1:exon:13801;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46045415 | 46045485 | 46045415 | ID=Msa0120840-mRNA-1:exon:13802;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46046003 | 46046059 | 46046003 | ID=Msa0120840-mRNA-1:exon:13803;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46046540 | 46046631 | 46046540 | ID=Msa0120840-mRNA-1:exon:13804;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46047424 | 46047471 | 46047424 | ID=Msa0120840-mRNA-1:exon:13805;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46047655 | 46047775 | 46047655 | ID=Msa0120840-mRNA-1:exon:13806;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46047869 | 46047915 | 46047869 | ID=Msa0120840-mRNA-1:exon:13807;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46048497 | 46048578 | 46048497 | ID=Msa0120840-mRNA-1:exon:13808;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46049264 | 46049340 | 46049264 | ID=Msa0120840-mRNA-1:exon:13809;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46049509 | 46049628 | 46049509 | ID=Msa0120840-mRNA-1:exon:13810;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46050209 | 46050283 | 46050209 | ID=Msa0120840-mRNA-1:exon:13811;Parent=Msa0120840-mRNA-1 |
| chr1_3 | exon | 46050388 | 46050788 | 46050388 | ID=Msa0120840-mRNA-1:exon:13812;Parent=Msa0120840-mRNA-1 |
| chr1_3 | five_prime_UTR | 46044963 | 46045064 | 46044963 | ID=Msa0120840-mRNA-1:five_prime_utr;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46045065 | 46045112 | 46045065 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46045213 | 46045330 | 46045213 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46045415 | 46045485 | 46045415 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46046003 | 46046059 | 46046003 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46046540 | 46046631 | 46046540 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46047424 | 46047471 | 46047424 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46047655 | 46047775 | 46047655 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46047869 | 46047915 | 46047869 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46048497 | 46048578 | 46048497 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46049264 | 46049340 | 46049264 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46049509 | 46049628 | 46049509 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46050209 | 46050283 | 46050209 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | CDS | 46050388 | 46050541 | 46050388 | ID=Msa0120840-mRNA-1:cds;Parent=Msa0120840-mRNA-1 |
| chr1_3 | three_prime_UTR | 46050542 | 46050788 | 46050542 | ID=Msa0120840-mRNA-1:three_prime_utr;Parent=Msa0120840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
