Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000560 | sp|P38557|TBG1_ARATH | 92.144 | 471 | 17 | 2 | 1 | 451 | 1 | 471 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa0028420 | 0.817512 | 3.173007e-52 | -8.615850e-47 |
| Msa0000560 | Msa0035340 | 0.802854 | 4.605222e-49 | -8.615850e-47 |
| Msa0000560 | Msa0039790 | 0.855933 | 4.524411e-62 | -8.615850e-47 |
| Msa0000560 | Msa0043230 | 0.807104 | 5.948994e-50 | -8.615850e-47 |
| Msa0000560 | Msa0087450 | 0.819624 | 1.053376e-52 | -8.615850e-47 |
| Msa0000560 | Msa0089950 | 0.808092 | 3.671167e-50 | -8.615850e-47 |
| Msa0000560 | Msa0090400 | 0.852278 | 5.125915e-61 | -8.615850e-47 |
| Msa0000560 | Msa0120840 | 0.836656 | 8.234153e-57 | -8.615850e-47 |
| Msa0000560 | Msa0126210 | 0.801739 | 7.811991e-49 | -8.615850e-47 |
| Msa0000560 | Msa0136650 | 0.811726 | 6.060180e-51 | -8.615850e-47 |
| Msa0000560 | Msa0137880 | 0.863967 | 1.704854e-64 | -8.615850e-47 |
| Msa0000560 | Msa0164610 | 0.824321 | 8.600093e-54 | -8.615850e-47 |
| Msa0000560 | Msa0180930 | 0.840379 | 9.011515e-58 | -8.615850e-47 |
| Msa0000560 | Msa0182320 | 0.805992 | 1.021197e-49 | -8.615850e-47 |
| Msa0000560 | Msa0202290 | 0.808298 | 3.317394e-50 | -8.615850e-47 |
| Msa0000560 | Msa0222560 | 0.806615 | 7.546509e-50 | -8.615850e-47 |
| Msa0000560 | Msa0255090 | 0.809224 | 2.102987e-50 | -8.615850e-47 |
| Msa0000560 | Msa0259380 | 0.810889 | 9.209597e-51 | -8.615850e-47 |
| Msa0000560 | Msa0267110 | 0.860796 | 1.608791e-63 | -8.615850e-47 |
| Msa0000560 | Msa0283800 | 0.826163 | 3.153380e-54 | -8.615850e-47 |
| Msa0000560 | Msa0292330 | 0.832174 | 1.099064e-55 | -8.615850e-47 |
| Msa0000560 | Msa0292400 | 0.816803 | 4.579723e-52 | -8.615850e-47 |
| Msa0000560 | Msa0301820 | 0.804754 | 1.855968e-49 | -8.615850e-47 |
| Msa0000560 | Msa0307280 | 0.823918 | 1.069377e-53 | -8.615850e-47 |
| Msa0000560 | Msa0321920 | 0.836083 | 1.151899e-56 | -8.615850e-47 |
| Msa0000560 | Msa0349710 | 0.868673 | 5.483754e-66 | -8.615850e-47 |
| Msa0000560 | Msa0367520 | 0.800674 | 1.290118e-48 | -8.615850e-47 |
| Msa0000560 | Msa0380620 | 0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0000560 | Msa0390970 | 0.809569 | 1.773637e-50 | -8.615850e-47 |
| Msa0000560 | Msa0419700 | 0.822127 | 2.797258e-53 | -8.615850e-47 |
| Msa0000560 | Msa0426530 | 0.802869 | 4.572426e-49 | -8.615850e-47 |
| Msa0000560 | Msa0428150 | 0.838284 | 3.150118e-57 | -8.615850e-47 |
| Msa0000560 | Msa0430260 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa0000560 | Msa0430300 | 0.801244 | 9.868136e-49 | -8.615850e-47 |
| Msa0000560 | Msa0434920 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0000560 | Msa0442830 | 0.832997 | 6.866524e-56 | -8.615850e-47 |
| Msa0000560 | Msa0444070 | 0.850074 | 2.147538e-60 | -8.615850e-47 |
| Msa0000560 | Msa0462500 | 0.838821 | 2.289902e-57 | -8.615850e-47 |
| Msa0000560 | Msa0483910 | 0.818155 | 2.272258e-52 | -8.615850e-47 |
| Msa0000560 | Msa0484150 | 0.800233 | 1.586794e-48 | -8.615850e-47 |
| Msa0000560 | Msa0517250 | 0.832514 | 9.053565e-56 | -8.615850e-47 |
| Msa0000560 | Msa0532070 | 0.818352 | 2.049750e-52 | -8.615850e-47 |
| Msa0000560 | Msa0547900 | 0.804473 | 2.124086e-49 | -8.615850e-47 |
| Msa0000560 | Msa0556170 | 0.822017 | 2.965497e-53 | -8.615850e-47 |
| Msa0000560 | Msa0587620 | 0.800075 | 1.708325e-48 | -8.615850e-47 |
| Msa0000560 | Msa0602880 | 0.800171 | 1.633505e-48 | -8.615850e-47 |
| Msa0000560 | Msa0618240 | 0.825250 | 5.192100e-54 | -8.615850e-47 |
| Msa0000560 | Msa0626450 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
| Msa0000560 | Msa0626490 | 0.812652 | 3.806523e-51 | -8.615850e-47 |
| Msa0000560 | Msa0652650 | 0.812439 | 4.236971e-51 | -8.615850e-47 |
| Msa0000560 | Msa0664600 | 0.807403 | 5.142785e-50 | -8.615850e-47 |
| Msa0000560 | Msa0683570 | 0.804803 | 1.813093e-49 | -8.615850e-47 |
| Msa0000560 | Msa0687460 | 0.812283 | 4.583220e-51 | -8.615850e-47 |
| Msa0000560 | Msa0694200 | 0.826300 | 2.926430e-54 | -8.615850e-47 |
| Msa0000560 | Msa0700460 | 0.822283 | 2.573852e-53 | -8.615850e-47 |
| Msa0000560 | Msa0749740 | 0.808599 | 2.861337e-50 | -8.615850e-47 |
| Msa0000560 | Msa0749770 | 0.800531 | 1.379681e-48 | -8.615850e-47 |
| Msa0000560 | Msa0765840 | 0.832291 | 1.028054e-55 | -8.615850e-47 |
| Msa0000560 | Msa0778550 | 0.802175 | 6.354977e-49 | -8.615850e-47 |
| Msa0000560 | Msa0815920 | 0.806290 | 8.838321e-50 | -8.615850e-47 |
| Msa0000560 | Msa0845440 | 0.818236 | 2.178027e-52 | -8.615850e-47 |
| Msa0000560 | Msa0869780 | 0.801857 | 7.386286e-49 | -8.615850e-47 |
| Msa0000560 | Msa0919770 | 0.821508 | 3.889459e-53 | -8.615850e-47 |
| Msa0000560 | Msa0945110 | 0.839832 | 1.251244e-57 | -8.615850e-47 |
| Msa0000560 | Msa0981320 | 0.837330 | 5.540327e-57 | -8.615850e-47 |
| Msa0000560 | Msa1003740 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0000560 | Msa1003800 | 0.819372 | 1.202045e-52 | -8.615850e-47 |
| Msa0000560 | Msa1018690 | 0.842764 | 2.118638e-58 | -8.615850e-47 |
| Msa0000560 | Msa1034600 | 0.820410 | 6.960293e-53 | -8.615850e-47 |
| Msa0000560 | Msa1037640 | 0.909690 | 4.307414e-82 | -8.615850e-47 |
| Msa0000560 | Msa1039220 | 0.828498 | 8.692794e-55 | -8.615850e-47 |
| Msa0000560 | Msa1042160 | 0.833493 | 5.167207e-56 | -8.615850e-47 |
| Msa0000560 | Msa1042190 | 0.832614 | 8.551475e-56 | -8.615850e-47 |
| Msa0000560 | Msa1044680 | 0.803148 | 4.003598e-49 | -8.615850e-47 |
| Msa0000560 | Msa1045140 | 0.813387 | 2.625965e-51 | -8.615850e-47 |
| Msa0000560 | Msa1072960 | 0.821594 | 3.715792e-53 | -8.615850e-47 |
| Msa0000560 | Msa1074370 | 0.826078 | 3.305176e-54 | -8.615850e-47 |
| Msa0000560 | Msa1080000 | 0.823651 | 1.234909e-53 | -8.615850e-47 |
| Msa0000560 | Msa1096960 | 0.807219 | 5.625649e-50 | -8.615850e-47 |
| Msa0000560 | Msa1103580 | 0.819396 | 1.187004e-52 | -8.615850e-47 |
| Msa0000560 | Msa1105640 | 0.805041 | 1.616321e-49 | -8.615850e-47 |
| Msa0000560 | Msa1113340 | 0.853840 | 1.831281e-61 | -8.615850e-47 |
| Msa0000560 | Msa1116220 | 0.811512 | 6.746810e-51 | -8.615850e-47 |
| Msa0000560 | Msa1123210 | 0.824032 | 1.005184e-53 | -8.615850e-47 |
| Msa0000560 | Msa1130280 | 0.997686 | 3.526857e-247 | -8.615850e-47 |
| Msa0000560 | Msa1147910 | 0.811071 | 8.409397e-51 | -8.615850e-47 |
| Msa0000560 | Msa1160910 | 0.855725 | 5.201181e-62 | -8.615850e-47 |
| Msa0000560 | Msa1162150 | 0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0000560 | Msa1167470 | 0.837123 | 6.257649e-57 | -8.615850e-47 |
| Msa0000560 | Msa1216090 | 0.804255 | 2.358414e-49 | -8.615850e-47 |
| Msa0000560 | Msa1216110 | 0.811859 | 5.669049e-51 | -8.615850e-47 |
| Msa0000560 | Msa1217050 | 0.834080 | 3.684683e-56 | -8.615850e-47 |
| Msa0000560 | Msa1217210 | 0.823687 | 1.211270e-53 | -8.615850e-47 |
| Msa0000560 | Msa1223470 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa0000560 | Msa1225700 | 0.809481 | 1.852662e-50 | -8.615850e-47 |
| Msa0000560 | Msa1232710 | 0.802439 | 5.607258e-49 | -8.615850e-47 |
| Msa0000560 | Msa1240770 | 0.837791 | 4.220222e-57 | -8.615850e-47 |
| Msa0000560 | Msa1282260 | 0.831413 | 1.693196e-55 | -8.615850e-47 |
| Msa0000560 | Msa1306340 | 0.802142 | 6.455710e-49 | -8.615850e-47 |
| Msa0000560 | Msa1315160 | 0.800302 | 1.536272e-48 | -8.615850e-47 |
| Msa0000560 | Msa1321340 | 0.856578 | 2.926340e-62 | -8.615850e-47 |
| Msa0000560 | Msa1369550 | 0.823156 | 1.612051e-53 | -8.615850e-47 |
| Msa0000560 | Msa1393780 | 0.827846 | 1.248425e-54 | -8.615850e-47 |
| Msa0000560 | Msa1411790 | 0.838521 | 2.736925e-57 | -8.615850e-47 |
| Msa0000560 | Msa1413690 | 0.820701 | 5.968013e-53 | -8.615850e-47 |
| Msa0000560 | Msa1431480 | 0.849383 | 3.350171e-60 | -8.615850e-47 |
| Msa0000560 | Msa1440960 | 0.808288 | 3.333842e-50 | -8.615850e-47 |
| Msa0000560 | Msa1454140 | 0.805143 | 1.538904e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000560 | MtrunA17_Chr7g0275431 | 95.781 | 474 | 0 | 2 | 1 | 454 | 1 | 474 | 0.0 | 932 |
| Msa0000560 | MtrunA17_Chr4g0007371 | 34.247 | 438 | 253 | 9 | 3 | 419 | 2 | 425 | 2.30e-77 | 248 |
| Msa0000560 | MtrunA17_Chr8g0386781 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 2.42e-77 | 248 |
| Msa0000560 | MtrunA17_Chr4g0008401 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 3.45e-77 | 247 |
| Msa0000560 | MtrunA17_Chr1g0203181 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 4.64e-77 | 247 |
| Msa0000560 | MtrunA17_Chr4g0008361 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 5.75e-77 | 247 |
| Msa0000560 | MtrunA17_Chr2g0292921 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 9.09e-77 | 246 |
| Msa0000560 | MtrunA17_Chr3g0142731 | 34.014 | 441 | 250 | 10 | 3 | 419 | 2 | 425 | 1.87e-76 | 246 |
| Msa0000560 | MtrunA17_Chr4g0051631 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 2.54e-76 | 245 |
| Msa0000560 | MtrunA17_Chr8g0393021 | 33.410 | 437 | 257 | 9 | 3 | 419 | 2 | 424 | 9.15e-76 | 244 |
| Msa0000560 | MtrunA17_Chr7g0255791 | 33.257 | 436 | 258 | 8 | 3 | 419 | 2 | 423 | 5.75e-75 | 241 |
| Msa0000560 | MtrunA17_Chr7g0253411 | 30.700 | 443 | 270 | 8 | 3 | 419 | 2 | 433 | 8.43e-65 | 215 |
| Msa0000560 | MtrunA17_Chr4g0054511 | 30.856 | 444 | 268 | 9 | 3 | 419 | 2 | 433 | 1.04e-62 | 209 |
| Msa0000560 | MtrunA17_Chr8g0378821 | 29.571 | 443 | 275 | 8 | 3 | 419 | 2 | 433 | 2.07e-62 | 209 |
| Msa0000560 | MtrunA17_Chr6g0461281 | 30.700 | 443 | 269 | 8 | 3 | 418 | 2 | 433 | 2.19e-62 | 209 |
| Msa0000560 | MtrunA17_Chr3g0140821 | 30.856 | 444 | 268 | 9 | 3 | 419 | 2 | 433 | 3.10e-62 | 208 |
| Msa0000560 | MtrunA17_Chr1g0206881 | 30.631 | 444 | 269 | 9 | 3 | 419 | 2 | 433 | 9.15e-62 | 207 |
| Msa0000560 | MtrunA17_Chr2g0300671 | 29.638 | 442 | 271 | 10 | 3 | 419 | 2 | 428 | 1.11e-48 | 172 |
| Msa0000560 | MtrunA17_Chr2g0300491 | 28.733 | 442 | 275 | 10 | 3 | 419 | 2 | 428 | 1.80e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000560 | AT3G61650.1 | 92.144 | 471 | 17 | 2 | 1 | 451 | 1 | 471 | 0.0 | 898 |
| Msa0000560 | AT5G05620.1 | 91.507 | 471 | 20 | 2 | 1 | 451 | 1 | 471 | 0.0 | 893 |
| Msa0000560 | AT5G44340.1 | 34.404 | 436 | 253 | 8 | 3 | 419 | 2 | 423 | 3.15e-79 | 253 |
| Msa0000560 | AT4G20890.1 | 33.945 | 436 | 255 | 8 | 3 | 419 | 2 | 423 | 1.86e-78 | 251 |
| Msa0000560 | AT5G23860.2 | 33.716 | 436 | 256 | 8 | 3 | 419 | 2 | 423 | 2.35e-77 | 248 |
| Msa0000560 | AT5G23860.1 | 33.716 | 436 | 256 | 8 | 3 | 419 | 2 | 423 | 2.35e-77 | 248 |
| Msa0000560 | AT2G29550.1 | 34.174 | 436 | 254 | 8 | 3 | 419 | 2 | 423 | 2.85e-77 | 248 |
| Msa0000560 | AT1G75780.1 | 34.325 | 437 | 253 | 9 | 3 | 419 | 2 | 424 | 1.22e-76 | 246 |
| Msa0000560 | AT5G62690.1 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 3.83e-76 | 245 |
| Msa0000560 | AT5G62700.1 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 3.83e-76 | 245 |
| Msa0000560 | AT1G20010.1 | 34.325 | 437 | 253 | 9 | 3 | 419 | 2 | 424 | 5.02e-76 | 245 |
| Msa0000560 | AT5G12250.1 | 33.486 | 436 | 257 | 8 | 3 | 419 | 2 | 423 | 2.26e-75 | 243 |
| Msa0000560 | AT1G64740.1 | 29.345 | 443 | 276 | 8 | 3 | 419 | 2 | 433 | 1.92e-62 | 209 |
| Msa0000560 | AT5G19780.1 | 29.797 | 443 | 274 | 8 | 3 | 419 | 2 | 433 | 2.42e-62 | 209 |
| Msa0000560 | AT5G19770.1 | 29.797 | 443 | 274 | 8 | 3 | 419 | 2 | 433 | 2.42e-62 | 209 |
| Msa0000560 | AT4G14960.2 | 30.631 | 444 | 269 | 9 | 3 | 419 | 2 | 433 | 6.11e-62 | 208 |
| Msa0000560 | AT1G50010.1 | 30.856 | 444 | 268 | 9 | 3 | 419 | 2 | 433 | 8.03e-62 | 207 |
| Msa0000560 | AT1G04820.1 | 30.856 | 444 | 268 | 9 | 3 | 419 | 2 | 433 | 8.03e-62 | 207 |
| Msa0000560 | AT4G14960.1 | 32.249 | 369 | 220 | 7 | 3 | 349 | 2 | 362 | 4.14e-55 | 189 |
Find 124 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCATACTACTGATTT+TGG | 0.178192 | 1_1:+1708607 | None:intergenic |
| CTTTCTGTAGTTGTCTAAAA+AGG | 0.228088 | 1_1:+1709008 | None:intergenic |
| TTGGAACCAAGGGTTATTAA+TGG | 0.245426 | 1_1:-1712525 | Msa0000560:CDS |
| TTTAGCTTGGCTAGCATCTT+TGG | 0.260486 | 1_1:+1710070 | None:intergenic |
| AAGAGACATTATTGAGAGTT+TGG | 0.287511 | 1_1:-1708811 | Msa0000560:CDS |
| ATTCCCCATTTGATATAATC+TGG | 0.291812 | 1_1:+1708762 | None:intergenic |
| CCGTGCTTTATTGATTGATT+TGG | 0.301583 | 1_1:-1712544 | Msa0000560:CDS |
| GTTCTATGTCATTCAATTGC+TGG | 0.305453 | 1_1:-1711231 | Msa0000560:CDS |
| ACCAGATCGGTATGGAATTC+TGG | 0.309683 | 1_1:-1712768 | Msa0000560:CDS |
| GTATATGGTTGGTTTGTTAT+TGG | 0.315591 | 1_1:-1708149 | Msa0000560:three_prime_UTR |
| TATATCCTGTCATTAGAAAA+TGG | 0.320239 | 1_1:+1710472 | None:intergenic |
| TGTATTGTTTGTTTATCATT+TGG | 0.325442 | 1_1:-1708221 | Msa0000560:three_prime_UTR |
| GAGTTTGGTTGACGAATATA+AGG | 0.328007 | 1_1:-1708796 | Msa0000560:CDS |
| TCACTTGTCTCCATTTGGTT+AGG | 0.344251 | 1_1:+1710753 | None:intergenic |
| CCACATCACTTGTCTCCATT+TGG | 0.361567 | 1_1:+1710748 | None:intergenic |
| GTGGGGTCCTGCTAGTATTC+AGG | 0.370913 | 1_1:-1709440 | Msa0000560:intron |
| TCTCATGATTGTAAAGATTA+CGG | 0.376121 | 1_1:+1712484 | None:intergenic |
| GGTCATTCAGAGTCTCTAAA+AGG | 0.387096 | 1_1:+1710814 | None:intergenic |
| AATATTGTCATTACCTGAGT+TGG | 0.398405 | 1_1:+1710008 | None:intergenic |
| AATCCCCAGATTATATCAAA+TGG | 0.399374 | 1_1:-1708767 | Msa0000560:CDS |
| CTGTGTGCAGTTTGAACATA+TGG | 0.400407 | 1_1:+1709296 | None:intergenic |
| AAGAAAAGCAGAGTGCAATT+TGG | 0.403095 | 1_1:-1713017 | Msa0000560:five_prime_UTR |
| CACTAACAATAGAATAGAAA+TGG | 0.404089 | 1_1:+1712888 | None:intergenic |
| GAATGTTGAAGAAGACATAA+TGG | 0.419103 | 1_1:-1711301 | Msa0000560:CDS |
| TCTCCTGTCATCATATTATT+CGG | 0.421502 | 1_1:+1708655 | None:intergenic |
| CTGGCAGGTGACGAGCAATA+AGG | 0.421976 | 1_1:-1708322 | Msa0000560:intron |
| ACAGGAGAGGGCAGTGCTGC+AGG | 0.426001 | 1_1:-1708640 | Msa0000560:CDS |
| TCCTTCTCAACTTATCGTAC+TGG | 0.427815 | 1_1:+1709037 | None:intergenic |
| CTGGCAGGCAAAGAATATTA+TGG | 0.438413 | 1_1:-1710111 | Msa0000560:intron |
| CACTTGTCTCCATTTGGTTA+GGG | 0.438949 | 1_1:+1710754 | None:intergenic |
| CATTCAATTGCTGGAGGGAC+AGG | 0.443706 | 1_1:-1711222 | Msa0000560:CDS |
| TCCAGAATTCCATACCGATC+TGG | 0.449492 | 1_1:+1712767 | None:intergenic |
| ATTGCTGGAGGGACAGGCTC+AGG | 0.449849 | 1_1:-1711216 | Msa0000560:intron |
| GCCTCTGACAGTGGAACGTC+AGG | 0.450901 | 1_1:-1710448 | Msa0000560:intron |
| GAATTTGTTTGAGCAAATGT+TGG | 0.452915 | 1_1:+1710603 | None:intergenic |
| ATCCCCAGATTATATCAAAT+GGG | 0.456784 | 1_1:-1708766 | Msa0000560:CDS |
| GGGCAGTGCTGCAGGATCAC+TGG | 0.459086 | 1_1:-1708632 | Msa0000560:CDS |
| TGAATTCCATTAATAACCCT+TGG | 0.461984 | 1_1:+1712519 | None:intergenic |
| GGCTCAGACATTTACTGAAA+AGG | 0.462594 | 1_1:+1709058 | None:intergenic |
| GATATAATCTGGGGATTCAC+AGG | 0.462754 | 1_1:+1708773 | None:intergenic |
| CAGACATCACAGTAGAAACT+AGG | 0.469353 | 1_1:+1710580 | None:intergenic |
| GTCATTAGAAAATGGCATCT+TGG | 0.471437 | 1_1:+1710480 | None:intergenic |
| CAGTGTGTTCCCTAACCAAA+TGG | 0.473529 | 1_1:-1710763 | Msa0000560:CDS |
| TTCCCCATTTGATATAATCT+GGG | 0.474962 | 1_1:+1708763 | None:intergenic |
| AAGTCATTATTCATGTATCC+TGG | 0.481660 | 1_1:+1710534 | None:intergenic |
| GCTAGTTAACTTTATTGAGT+GGG | 0.483561 | 1_1:-1709458 | Msa0000560:CDS |
| ATATTGTCATTACCTGAGTT+GGG | 0.490303 | 1_1:+1710009 | None:intergenic |
| AGAAAATGGCATCTTGGTGT+TGG | 0.491952 | 1_1:+1710486 | None:intergenic |
| CCTGAGTAGCGAAATCTTCG+AGG | 0.493935 | 1_1:+1712704 | None:intergenic |
| AGAATTTCTTTGTTTAGTAG+TGG | 0.496021 | 1_1:+1712923 | None:intergenic |
| CAAATCAATCAATAAAGCAC+GGG | 0.496031 | 1_1:+1712545 | None:intergenic |
| AGTGTCAAAAGTGAGTTATA+TGG | 0.497975 | 1_1:+1710717 | None:intergenic |
| GAACACTTACAGCAAACATT+GGG | 0.502913 | 1_1:+1708983 | None:intergenic |
| CCTCGAAGATTTCGCTACTC+AGG | 0.506650 | 1_1:-1712704 | Msa0000560:intron |
| GAGTTGGGTCAACCTCTCCT+TGG | 0.508239 | 1_1:+1710024 | None:intergenic |
| TTAGGTCAGCGGCCTTATGT+TGG | 0.508961 | 1_1:-1709103 | Msa0000560:intron |
| GATGGCAGTGACAGTCTTGA+GGG | 0.509882 | 1_1:-1711258 | Msa0000560:CDS |
| GGAACACTTACAGCAAACAT+TGG | 0.511079 | 1_1:+1708982 | None:intergenic |
| GAATTGATATATATTTAGCT+TGG | 0.513871 | 1_1:+1710057 | None:intergenic |
| TCTTAATGCTGATTGTGTTG+TGG | 0.515975 | 1_1:-1710682 | Msa0000560:CDS |
| ATTGATTGATTTGGAACCAA+GGG | 0.524085 | 1_1:-1712535 | Msa0000560:CDS |
| TAGTATGACTAGCCAACATA+AGG | 0.524461 | 1_1:+1709091 | None:intergenic |
| ACAACCACTCTTCGTTATCC+AGG | 0.524939 | 1_1:-1710552 | Msa0000560:CDS |
| GATCCGAATAATATGATGAC+AGG | 0.524991 | 1_1:-1708658 | Msa0000560:CDS |
| AGGATATACGCCTCTGACAG+TGG | 0.526564 | 1_1:-1710457 | Msa0000560:CDS |
| ACTATTGACACGAAGAATGC+TGG | 0.527775 | 1_1:-1708067 | Msa0000560:three_prime_UTR |
| AAAAGCAGAGTGCAATTTGG+CGG | 0.543842 | 1_1:-1713014 | Msa0000560:five_prime_UTR |
| TACAGTGGTATTCTGTACTA+CGG | 0.545684 | 1_1:+1708191 | None:intergenic |
| AGATTATATCAAATGGGGAA+TGG | 0.549783 | 1_1:-1708760 | Msa0000560:CDS |
| AGCTAGTTAACTTTATTGAG+TGG | 0.551550 | 1_1:-1709459 | Msa0000560:CDS |
| GGCGGTTGAAAAGTAGAGAG+TGG | 0.555759 | 1_1:-1712996 | Msa0000560:five_prime_UTR |
| AATAATATGATGACAGGAGA+GGG | 0.566951 | 1_1:-1708652 | Msa0000560:CDS |
| AGATGGCAGTGACAGTCTTG+AGG | 0.567168 | 1_1:-1711259 | Msa0000560:CDS |
| CTAGTTAACTTTATTGAGTG+GGG | 0.569176 | 1_1:-1709457 | Msa0000560:CDS |
| TGTCATGAGGAGACTTCTGC+AGG | 0.571604 | 1_1:-1710200 | Msa0000560:intron |
| ACCTGACGTTCCACTGTCAG+AGG | 0.573775 | 1_1:+1710447 | None:intergenic |
| AGAGATAATCACACTTCAAG+TGG | 0.576431 | 1_1:-1712803 | Msa0000560:CDS |
| ATGCGGAAACCAGATCGGTA+TGG | 0.576564 | 1_1:-1712776 | Msa0000560:CDS |
| CCAAATCAATCAATAAAGCA+CGG | 0.577216 | 1_1:+1712544 | None:intergenic |
| TTATGGTCTCTTCTTATGCA+CGG | 0.578464 | 1_1:-1710094 | Msa0000560:CDS |
| CTATGTCATTCAATTGCTGG+AGG | 0.585953 | 1_1:-1711228 | Msa0000560:CDS |
| TCCCCATTTGATATAATCTG+GGG | 0.589500 | 1_1:+1708764 | None:intergenic |
| TCGCATACCTGAATACTAGC+AGG | 0.597022 | 1_1:+1709433 | None:intergenic |
| GGTGACGAGCAATAAGGAAG+TGG | 0.600143 | 1_1:-1708316 | Msa0000560:three_prime_UTR |
| ATAACGAAGAGTGGTTGTGC+TGG | 0.603190 | 1_1:+1710557 | None:intergenic |
| AGGAGAGGTTGACCCAACTC+AGG | 0.603351 | 1_1:-1710021 | Msa0000560:intron |
| ATATGTTCAAACTGCACACA+GGG | 0.604079 | 1_1:-1709294 | Msa0000560:intron |
| TCAATTCTGAATATCATCCA+AGG | 0.606426 | 1_1:-1710041 | Msa0000560:CDS |
| AGACATCACAGTAGAAACTA+GGG | 0.607333 | 1_1:+1710581 | None:intergenic |
| GCCAGTACGATAAGTTGAGA+AGG | 0.608803 | 1_1:-1709038 | Msa0000560:CDS |
| GACATTTACTGAAAAGGTGA+CGG | 0.609104 | 1_1:+1709064 | None:intergenic |
| TATTGATTGATTTGGAACCA+AGG | 0.610327 | 1_1:-1712536 | Msa0000560:CDS |
| TCAAAAGTGAGTTATATGGT+TGG | 0.610753 | 1_1:+1710721 | None:intergenic |
| GAACATGGTATCAGCAAAGA+CGG | 0.611540 | 1_1:-1712730 | Msa0000560:CDS |
| GGACAATGCGGAAACCAGAT+CGG | 0.618984 | 1_1:-1712781 | Msa0000560:CDS |
| GAGATAATCACACTTCAAGT+GGG | 0.619478 | 1_1:-1712802 | Msa0000560:CDS |
| AGGATACATGAATAATGACT+TGG | 0.619688 | 1_1:-1710532 | Msa0000560:CDS |
| AAACAACTCTGTCTCGAACA+TGG | 0.619782 | 1_1:-1712745 | Msa0000560:CDS |
| ATGATTGACAGAGAAGCAGA+TGG | 0.626844 | 1_1:-1711276 | Msa0000560:CDS |
| TACATGAATAATGACTTGGT+TGG | 0.628614 | 1_1:-1710528 | Msa0000560:CDS |
| CATATGTTCAAACTGCACAC+AGG | 0.630458 | 1_1:-1709295 | Msa0000560:CDS |
| GTGTTGGAATCAAAGAGGCA+AGG | 0.634632 | 1_1:+1710502 | None:intergenic |
| TCCCCAGATTATATCAAATG+GGG | 0.635043 | 1_1:-1708765 | Msa0000560:CDS |
| TTATATCAAATGGGGAATGG+AGG | 0.637675 | 1_1:-1708757 | Msa0000560:intron |
| TGTGTGCAGTTTGAACATAT+GGG | 0.640655 | 1_1:+1709297 | None:intergenic |
| GTGTGCAGTTTGAACATATG+GGG | 0.646116 | 1_1:+1709298 | None:intergenic |
| TATGTCATTCAATTGCTGGA+GGG | 0.647449 | 1_1:-1711227 | Msa0000560:CDS |
| TCTGAATATCATCCAAGGAG+AGG | 0.649229 | 1_1:-1710036 | Msa0000560:CDS |
| TTGATTCATCAAACTCTGAG+AGG | 0.650287 | 1_1:+1708832 | None:intergenic |
| TGAAGTGTGATTATCTCTCG+AGG | 0.657196 | 1_1:+1712808 | None:intergenic |
| GAATAATATGATGACAGGAG+AGG | 0.675044 | 1_1:-1708653 | Msa0000560:CDS |
| TCTTGGTGTTGGAATCAAAG+AGG | 0.676873 | 1_1:+1710497 | None:intergenic |
| ACACGAAGAATGCTGGCAAG+TGG | 0.679689 | 1_1:-1708060 | Msa0000560:three_prime_UTR |
| AGGTTCATGAGAGTTTGCAG+AGG | 0.683623 | 1_1:-1709495 | Msa0000560:CDS |
| GGTTGAAAAGTAGAGAGTGG+TGG | 0.684934 | 1_1:-1712993 | Msa0000560:five_prime_UTR |
| CTGAAAACGAATAACTACAG+TGG | 0.686210 | 1_1:+1708176 | None:intergenic |
| GTATCCTGGATAACGAAGAG+TGG | 0.693788 | 1_1:+1710548 | None:intergenic |
| CCACTGTGCTTGATGTCATG+AGG | 0.693936 | 1_1:-1710213 | Msa0000560:CDS |
| AAATCAATCAATAAAGCACG+GGG | 0.701160 | 1_1:+1712546 | None:intergenic |
| ACACTTCAAGTGGGACAATG+CGG | 0.701458 | 1_1:-1712793 | Msa0000560:CDS |
| AATGGAGACAAGTGATGTGG+TGG | 0.707586 | 1_1:-1710745 | Msa0000560:CDS |
| CCAAATGGAGACAAGTGATG+TGG | 0.730166 | 1_1:-1710748 | Msa0000560:CDS |
| CCTCATGACATCAAGCACAG+TGG | 0.730325 | 1_1:+1710213 | None:intergenic |
| AGTGGTATTCTGTACTACGG+CGG | 0.750261 | 1_1:+1708194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAATAAAATTGCAA+GGG | + | chr1_1:1709492-1709511 | None:intergenic | 10.0% |
| !! | ATATAATAAATAAAATTGCA+AGG | + | chr1_1:1709493-1709512 | None:intergenic | 10.0% |
| !! | TATTTATTATATAACTAGAA+AGG | - | chr1_1:1709501-1709520 | Msa0000560:intron | 10.0% |
| !!! | AAATAATTTTAAAAAAACAC+AGG | + | chr1_1:1710181-1710200 | None:intergenic | 10.0% |
| !!! | ATAGTTTAACATATATTTTT+AGG | - | chr1_1:1711886-1711905 | Msa0000560:intron | 10.0% |
| !!! | TTTATATTTTTTCTTTGTAT+AGG | - | chr1_1:1712396-1712415 | Msa0000560:intron | 10.0% |
| !!! | TATTTTTTTAGATATTTGTT+GGG | + | chr1_1:1712971-1712990 | None:intergenic | 10.0% |
| !!! | ATATTTTTTTAGATATTTGT+TGG | + | chr1_1:1712972-1712991 | None:intergenic | 10.0% |
| !!! | TTTTCATTTCAATTTCAAAA+AGG | - | chr1_1:1708217-1708236 | Msa0000560:three_prime_UTR | 15.0% |
| !! | TTGTAGAATATTTAATAACT+AGG | + | chr1_1:1708971-1708990 | None:intergenic | 15.0% |
| !!! | TCAACTATTTTAAAATGTAA+GGG | - | chr1_1:1709654-1709673 | Msa0000560:intron | 15.0% |
| !! | AAATTCTCAATAAAGTTAAA+GGG | + | chr1_1:1709949-1709968 | None:intergenic | 15.0% |
| !!! | AGATTAATTTCAATTTTTCA+AGG | + | chr1_1:1711392-1711411 | None:intergenic | 15.0% |
| !!! | TTAACATATATTTTTAGGAA+TGG | - | chr1_1:1711891-1711910 | Msa0000560:intron | 15.0% |
| !! | TGAAAATATTGATATGAAAT+TGG | + | chr1_1:1712118-1712137 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTTATCTTGCTA+GGG | + | chr1_1:1712565-1712584 | None:intergenic | 15.0% |
| !!! | ATTATGAAAACTTTCTTTTT+TGG | - | chr1_1:1712799-1712818 | Msa0000560:CDS | 15.0% |
| !! | AACTACAAATAACAAACAAA+TGG | + | chr1_1:1708778-1708797 | None:intergenic | 20.0% |
| !!! | GTCAACTATTTTAAAATGTA+AGG | - | chr1_1:1709653-1709672 | Msa0000560:intron | 20.0% |
| !! | AATTCTCAATAAAGTTAAAG+GGG | + | chr1_1:1709948-1709967 | None:intergenic | 20.0% |
| !! | CAAATTCTCAATAAAGTTAA+AGG | + | chr1_1:1709950-1709969 | None:intergenic | 20.0% |
| !! | GAATTGATATATATTTAGCT+TGG | + | chr1_1:1711022-1711041 | None:intergenic | 20.0% |
| !! | TCTTCTATTAAAAAATACCA+CGG | + | chr1_1:1711191-1711210 | None:intergenic | 20.0% |
| !!! | TGGTATTTTTTAATAGAAGA+TGG | - | chr1_1:1711191-1711210 | Msa0000560:intron | 20.0% |
| !! | ATCATAATACAGTTTAGAAA+GGG | + | chr1_1:1711540-1711559 | None:intergenic | 20.0% |
| !! | AATCATAATACAGTTTAGAA+AGG | + | chr1_1:1711541-1711560 | None:intergenic | 20.0% |
| !!! | TATGATTTTAATGTTCTCTA+TGG | - | chr1_1:1711554-1711573 | Msa0000560:intron | 20.0% |
| !! | GATAAGCATAAAAATTAAGA+CGG | + | chr1_1:1711832-1711851 | None:intergenic | 20.0% |
| !! | CCTAATAATAATATCTTACT+TGG | + | chr1_1:1712495-1712514 | None:intergenic | 20.0% |
| !! | CCAAGTAAGATATTATTATT+AGG | - | chr1_1:1712492-1712511 | Msa0000560:CDS | 20.0% |
| !!! | TTTTTTATTTATCTTGCTAG+GGG | + | chr1_1:1712564-1712583 | None:intergenic | 20.0% |
| !!! | CATTTTTTATTTATCTTGCT+AGG | + | chr1_1:1712566-1712585 | None:intergenic | 20.0% |
| !! | TGAAATATGAATGTTAAATG+TGG | - | chr1_1:1712584-1712603 | Msa0000560:CDS | 20.0% |
| !! | TGTATTGTTTGTTTATCATT+TGG | - | chr1_1:1712855-1712874 | Msa0000560:five_prime_UTR | 20.0% |
| !! | AGAATTTCTTTGTTTAGTAG+TGG | + | chr1_1:1708156-1708175 | None:intergenic | 25.0% |
| ! | CACTAACAATAGAATAGAAA+TGG | + | chr1_1:1708191-1708210 | None:intergenic | 25.0% |
| ! | TCTCATGATTGTAAAGATTA+CGG | + | chr1_1:1708595-1708614 | None:intergenic | 25.0% |
| !!! | AATATTTTTGTTGCTGATCA+TGG | - | chr1_1:1708614-1708633 | Msa0000560:CDS | 25.0% |
| ! | CTTCACATGAAAAAACATAA+AGG | - | chr1_1:1709448-1709467 | Msa0000560:CDS | 25.0% |
| ! | TGAAAAAACATAAAGGTTGA+AGG | - | chr1_1:1709455-1709474 | Msa0000560:CDS | 25.0% |
| ! | GAAAAAACATAAAGGTTGAA+GGG | - | chr1_1:1709456-1709475 | Msa0000560:CDS | 25.0% |
| ! | CATTTAAAAAACACAAAACC+AGG | + | chr1_1:1709588-1709607 | None:intergenic | 25.0% |
| ! | ATTCTCAATAAAGTTAAAGG+GGG | + | chr1_1:1709947-1709966 | None:intergenic | 25.0% |
| ! | ATTAATTTCCAGCAAATTGT+CGG | + | chr1_1:1709995-1710014 | None:intergenic | 25.0% |
| !!! | AAATTGCTTTTAACGCATAA+TGG | - | chr1_1:1710076-1710095 | Msa0000560:CDS | 25.0% |
| ! | TCTTAAATATAGGAAGTCAA+AGG | + | chr1_1:1710126-1710145 | None:intergenic | 25.0% |
| ! | TTGACTTCCTATATTTAAGA+TGG | - | chr1_1:1710126-1710145 | Msa0000560:intron | 25.0% |
| ! | AGGTTATCCATCTTAAATAT+AGG | + | chr1_1:1710136-1710155 | None:intergenic | 25.0% |
| ! | GTGAGAAATATTTAAGCAAT+CGG | + | chr1_1:1710159-1710178 | None:intergenic | 25.0% |
| ! | TATATCCTGTCATTAGAAAA+TGG | + | chr1_1:1710607-1710626 | None:intergenic | 25.0% |
| !!! | TGCTCGAAATATCATTTTTA+TGG | + | chr1_1:1710676-1710695 | None:intergenic | 25.0% |
| ! | TCTTTACAGGACAAAAATTT+AGG | + | chr1_1:1710710-1710729 | None:intergenic | 25.0% |
| ! | TACGGAGGAAATATAAAATA+GGG | + | chr1_1:1710797-1710816 | None:intergenic | 25.0% |
| ! | TTACGGAGGAAATATAAAAT+AGG | + | chr1_1:1710798-1710817 | None:intergenic | 25.0% |
| ! | TGAAATTAATCTTCAACTGA+TGG | - | chr1_1:1711400-1711419 | Msa0000560:intron | 25.0% |
| ! | TTAATGTTCTCTATGGATTT+AGG | - | chr1_1:1711561-1711580 | Msa0000560:intron | 25.0% |
| ! | CATCAAACTAAATATGAAAG+AGG | + | chr1_1:1711713-1711732 | None:intergenic | 25.0% |
| ! | AAACAAAAAAATGAAAAGCG+AGG | + | chr1_1:1712359-1712378 | None:intergenic | 25.0% |
| !!! | TTTCTTCATACTACTGATTT+TGG | + | chr1_1:1712472-1712491 | None:intergenic | 25.0% |
| !! | ATTAGTTTACTTTCCTTCTA+GGG | - | chr1_1:1712637-1712656 | Msa0000560:intron | 25.0% |
| ! | ACAAGAATCTTAGACATTTA+TGG | + | chr1_1:1712726-1712745 | None:intergenic | 25.0% |
| !!! | TGAAAACTTTCTTTTTTGGA+TGG | - | chr1_1:1712803-1712822 | Msa0000560:CDS | 25.0% |
| !! | TTCGTTTTCAGTAATGTATA+TGG | - | chr1_1:1712912-1712931 | Msa0000560:five_prime_UTR | 25.0% |
| !! | TTTTCAGTAATGTATATGGT+TGG | - | chr1_1:1712916-1712935 | Msa0000560:five_prime_UTR | 25.0% |
| AAATCAATCAATAAAGCACG+GGG | + | chr1_1:1708533-1708552 | None:intergenic | 30.0% | |
| CAAATCAATCAATAAAGCAC+GGG | + | chr1_1:1708534-1708553 | None:intergenic | 30.0% | |
| CCAAATCAATCAATAAAGCA+CGG | + | chr1_1:1708535-1708554 | None:intergenic | 30.0% | |
| !! | TATTGATTGATTTGGAACCA+AGG | - | chr1_1:1708540-1708559 | Msa0000560:intron | 30.0% |
| !! | ATTGATTGATTTGGAACCAA+GGG | - | chr1_1:1708541-1708560 | Msa0000560:intron | 30.0% |
| TGAATTCCATTAATAACCCT+TGG | + | chr1_1:1708560-1708579 | None:intergenic | 30.0% | |
| ATTAAAGTAAGCATACCTGA+TGG | + | chr1_1:1708673-1708692 | None:intergenic | 30.0% | |
| AGTTCTCAATAACATAAGTC+TGG | - | chr1_1:1708893-1708912 | Msa0000560:intron | 30.0% | |
| ! | GATTTTCTTTAGCATGCTAA+TGG | - | chr1_1:1708922-1708941 | Msa0000560:intron | 30.0% |
| TCAGCAAAATTAGTAGTGAA+TGG | - | chr1_1:1709001-1709020 | Msa0000560:CDS | 30.0% | |
| AGAAGGAATAGAAATTAGAG+AGG | - | chr1_1:1709097-1709116 | Msa0000560:CDS | 30.0% | |
| GAAGGAATAGAAATTAGAGA+GGG | - | chr1_1:1709098-1709117 | Msa0000560:CDS | 30.0% | |
| AAATAAAGAAGGAAACCAAG+AGG | + | chr1_1:1709173-1709192 | None:intergenic | 30.0% | |
| GAGAACTGGAAAAATAAAGA+AGG | + | chr1_1:1709184-1709203 | None:intergenic | 30.0% | |
| ACTAGAGACTGAATACATAA+AGG | + | chr1_1:1709206-1709225 | None:intergenic | 30.0% | |
| ! | AGTGTCTTTTGCTTGTAAAT+TGG | - | chr1_1:1709223-1709242 | Msa0000560:intron | 30.0% |
| TCAAATTCAATCAATGACTC+TGG | - | chr1_1:1709372-1709391 | Msa0000560:intron | 30.0% | |
| AAAAACTACCGTATTATGGA+AGG | + | chr1_1:1709557-1709576 | None:intergenic | 30.0% | |
| GTACAAAAACTACCGTATTA+TGG | + | chr1_1:1709561-1709580 | None:intergenic | 30.0% | |
| TTGCACATTATAATCCTGAT+AGG | - | chr1_1:1709611-1709630 | Msa0000560:intron | 30.0% | |
| ! | TGAGTGATGAGTTACATTTT+TGG | - | chr1_1:1709701-1709720 | Msa0000560:intron | 30.0% |
| TGGTTGTTAATATCTGATCA+GGG | - | chr1_1:1709749-1709768 | Msa0000560:intron | 30.0% | |
| GAATGTTGAAGAAGACATAA+TGG | - | chr1_1:1709775-1709794 | Msa0000560:intron | 30.0% | |
| ! | TTTTTCCTAGTATTTGCCTT+AGG | - | chr1_1:1709897-1709916 | Msa0000560:intron | 30.0% |
| GAAACTTATATGATGTCCTA+AGG | + | chr1_1:1709916-1709935 | None:intergenic | 30.0% | |
| ATTAATCTTACACTCAAGAG+CGG | - | chr1_1:1710009-1710028 | Msa0000560:intron | 30.0% | |
| AGAAATATTTAAGCAATCGG+AGG | + | chr1_1:1710156-1710175 | None:intergenic | 30.0% | |
| GTTATTCCATTCATTTATGC+AGG | - | chr1_1:1710227-1710246 | Msa0000560:CDS | 30.0% | |
| TCAAAAGTGAGTTATATGGT+TGG | + | chr1_1:1710358-1710377 | None:intergenic | 30.0% | |
| AGTGTCAAAAGTGAGTTATA+TGG | + | chr1_1:1710362-1710381 | None:intergenic | 30.0% | |
| ! | GAATTTGTTTGAGCAAATGT+TGG | + | chr1_1:1710476-1710495 | None:intergenic | 30.0% |
| AAGTCATTATTCATGTATCC+TGG | + | chr1_1:1710545-1710564 | None:intergenic | 30.0% | |
| AGGATACATGAATAATGACT+TGG | - | chr1_1:1710544-1710563 | Msa0000560:CDS | 30.0% | |
| !! | TACATGAATAATGACTTGGT+TGG | - | chr1_1:1710548-1710567 | Msa0000560:CDS | 30.0% |
| TTATGGAGAAAATGACACAA+AGG | + | chr1_1:1710659-1710678 | None:intergenic | 30.0% | |
| CAAAACAACAGAATCTTTAC+AGG | + | chr1_1:1710723-1710742 | None:intergenic | 30.0% | |
| !!! | ATTCTGTTGTTTTGTTGAAC+TGG | - | chr1_1:1710729-1710748 | Msa0000560:CDS | 30.0% |
| ACGGAGGAAATATAAAATAG+GGG | + | chr1_1:1710796-1710815 | None:intergenic | 30.0% | |
| AATATCATCCGATCAGATTA+CGG | + | chr1_1:1710815-1710834 | None:intergenic | 30.0% | |
| TTCTATTGACATTAAGTTCC+TGG | - | chr1_1:1710946-1710965 | Msa0000560:intron | 30.0% | |
| TCAATTCTGAATATCATCCA+AGG | - | chr1_1:1711035-1711054 | Msa0000560:intron | 30.0% | |
| ATATTGTCATTACCTGAGTT+GGG | + | chr1_1:1711070-1711089 | None:intergenic | 30.0% | |
| AATATTGTCATTACCTGAGT+TGG | + | chr1_1:1711071-1711090 | None:intergenic | 30.0% | |
| ACTCAGTTTCAGTTAACAAA+TGG | + | chr1_1:1711125-1711144 | None:intergenic | 30.0% | |
| AACTGAAACTGAGTTACAAA+AGG | - | chr1_1:1711131-1711150 | Msa0000560:intron | 30.0% | |
| AAATGAGCTCAACAAATGAA+TGG | + | chr1_1:1711164-1711183 | None:intergenic | 30.0% | |
| ! | ATTCATTTGTTGAGCTCATT+TGG | - | chr1_1:1711163-1711182 | Msa0000560:intron | 30.0% |
| !!! | ATTTCTTTTTCAGCTTCTAC+TGG | - | chr1_1:1711272-1711291 | Msa0000560:CDS | 30.0% |
| ATGTGACGTTAATTAGAAGA+AGG | + | chr1_1:1711321-1711340 | None:intergenic | 30.0% | |
| AGCTAGTTAACTTTATTGAG+TGG | - | chr1_1:1711617-1711636 | Msa0000560:intron | 30.0% | |
| GCTAGTTAACTTTATTGAGT+GGG | - | chr1_1:1711618-1711637 | Msa0000560:intron | 30.0% | |
| CTAGTTAACTTTATTGAGTG+GGG | - | chr1_1:1711619-1711638 | Msa0000560:intron | 30.0% | |
| !! | ACAATCTTATCTTGCTTTTC+TGG | - | chr1_1:1711733-1711752 | Msa0000560:intron | 30.0% |
| TAGGAATGGTTATTATTCTG+AGG | - | chr1_1:1711905-1711924 | Msa0000560:intron | 30.0% | |
| !! | AATGGTTATTATTCTGAGGT+TGG | - | chr1_1:1711909-1711928 | Msa0000560:intron | 30.0% |
| TAATAAAAAGCAAAGCACAC+AGG | + | chr1_1:1711956-1711975 | None:intergenic | 30.0% | |
| !!! | TGTGTGCTTTGCTTTTTATT+AGG | - | chr1_1:1711955-1711974 | Msa0000560:intron | 30.0% |
| !!! | TTTGCTTTTTATTAGGTCAG+CGG | - | chr1_1:1711962-1711981 | Msa0000560:intron | 30.0% |
| CTTTCTGTAGTTGTCTAAAA+AGG | + | chr1_1:1712071-1712090 | None:intergenic | 30.0% | |
| AAGAGACATTATTGAGAGTT+TGG | - | chr1_1:1712265-1712284 | Msa0000560:intron | 30.0% | |
| AATCCCCAGATTATATCAAA+TGG | - | chr1_1:1712309-1712328 | Msa0000560:intron | 30.0% | |
| ATCCCCAGATTATATCAAAT+GGG | - | chr1_1:1712310-1712329 | Msa0000560:intron | 30.0% | |
| TTCCCCATTTGATATAATCT+GGG | + | chr1_1:1712316-1712335 | None:intergenic | 30.0% | |
| ATTCCCCATTTGATATAATC+TGG | + | chr1_1:1712317-1712336 | None:intergenic | 30.0% | |
| AGATTATATCAAATGGGGAA+TGG | - | chr1_1:1712316-1712335 | Msa0000560:intron | 30.0% | |
| TCTCCTGTCATCATATTATT+CGG | + | chr1_1:1712424-1712443 | None:intergenic | 30.0% | |
| AATAATATGATGACAGGAGA+GGG | - | chr1_1:1712424-1712443 | Msa0000560:intron | 30.0% | |
| ATTATTATTAGGCCATAAGC+AGG | - | chr1_1:1712503-1712522 | Msa0000560:CDS | 30.0% | |
| ! | CATTAGTTTACTTTCCTTCT+AGG | - | chr1_1:1712636-1712655 | Msa0000560:intron | 30.0% |
| TCGTCAACATTACATTCAAA+TGG | + | chr1_1:1712674-1712693 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTGGATGGTTTG+CGG | - | chr1_1:1712810-1712829 | Msa0000560:CDS | 30.0% |
| !! | GTATATGGTTGGTTTGTTAT+TGG | - | chr1_1:1712927-1712946 | Msa0000560:five_prime_UTR | 30.0% |
| AAGAAAAGCAGAGTGCAATT+TGG | - | chr1_1:1708059-1708078 | Msa0000560:three_prime_UTR | 35.0% | |
| !!! | CATTTTTTTAGGGTTTCGGA+GGG | + | chr1_1:1708248-1708267 | None:intergenic | 35.0% |
| !!! | GAGGCATTTTTTTAGGGTTT+CGG | + | chr1_1:1708252-1708271 | None:intergenic | 35.0% |
| !!! | TCTCTCGAGGCATTTTTTTA+GGG | + | chr1_1:1708258-1708277 | None:intergenic | 35.0% |
| !!! | ATCTCTCGAGGCATTTTTTT+AGG | + | chr1_1:1708259-1708278 | None:intergenic | 35.0% |
| AGAGATAATCACACTTCAAG+TGG | - | chr1_1:1708273-1708292 | Msa0000560:three_prime_UTR | 35.0% | |
| GAGATAATCACACTTCAAGT+GGG | - | chr1_1:1708274-1708293 | Msa0000560:three_prime_UTR | 35.0% | |
| ! | CCGTGCTTTATTGATTGATT+TGG | - | chr1_1:1708532-1708551 | Msa0000560:intron | 35.0% |
| TTGGAACCAAGGGTTATTAA+TGG | - | chr1_1:1708551-1708570 | Msa0000560:intron | 35.0% | |
| ! | ATTTTTGTTGCTGATCATGG+TGG | - | chr1_1:1708617-1708636 | Msa0000560:CDS | 35.0% |
| !! | TTAGCATGCTAATGGTTTTG+TGG | - | chr1_1:1708930-1708949 | Msa0000560:intron | 35.0% |
| TTAGTAGTGAATGGACAGAT+AGG | - | chr1_1:1709010-1709029 | Msa0000560:CDS | 35.0% | |
| AGTCACAATTCCTGTAATCA+AGG | - | chr1_1:1709042-1709061 | Msa0000560:CDS | 35.0% | |
| GTCACAATTCCTGTAATCAA+GGG | - | chr1_1:1709043-1709062 | Msa0000560:CDS | 35.0% | |
| ATATTCCTTCCCTTGATTAC+AGG | + | chr1_1:1709055-1709074 | None:intergenic | 35.0% | |
| AAGGGAAGGAATATGTGTAA+GGG | - | chr1_1:1709061-1709080 | Msa0000560:CDS | 35.0% | |
| CTGAATACATAAAGGAGAAC+TGG | + | chr1_1:1709198-1709217 | None:intergenic | 35.0% | |
| AGTCAGTGTATAAACTAAGG+AGG | + | chr1_1:1709257-1709276 | None:intergenic | 35.0% | |
| TCCTTAGTTTATACACTGAC+TGG | - | chr1_1:1709256-1709275 | Msa0000560:intron | 35.0% | |
| ! | CCTTAGTTTATACACTGACT+GGG | - | chr1_1:1709257-1709276 | Msa0000560:intron | 35.0% |
| !! | ACAAGTGAAGCATTGTGTAA+TGG | + | chr1_1:1709344-1709363 | None:intergenic | 35.0% |
| ATCGTCAACCTTCCATAATA+CGG | - | chr1_1:1709546-1709565 | Msa0000560:intron | 35.0% | |
| ATAGTTGACTAAGACTCCTA+TGG | + | chr1_1:1709642-1709661 | None:intergenic | 35.0% | |
| TCAGATATTAACAACCACAC+AGG | + | chr1_1:1709746-1709765 | None:intergenic | 35.0% | |
| GTGGTTGTTAATATCTGATC+AGG | - | chr1_1:1709748-1709767 | Msa0000560:intron | 35.0% | |
| GTTCTATGTCATTCAATTGC+TGG | - | chr1_1:1709845-1709864 | Msa0000560:intron | 35.0% | |
| TATGTCATTCAATTGCTGGA+GGG | - | chr1_1:1709849-1709868 | Msa0000560:intron | 35.0% | |
| AACGCATAATGGCTAAGAAT+TGG | - | chr1_1:1710087-1710106 | Msa0000560:CDS | 35.0% | |
| ACGCATAATGGCTAAGAATT+GGG | - | chr1_1:1710088-1710107 | Msa0000560:CDS | 35.0% | |
| TCCATTCATTTATGCAGGTA+TGG | - | chr1_1:1710232-1710251 | Msa0000560:CDS | 35.0% | |
| CCATTCATTTATGCAGGTAT+GGG | - | chr1_1:1710233-1710252 | Msa0000560:CDS | 35.0% | |
| !!! | GAACCAGTTTTTTGCTGTAT+CGG | + | chr1_1:1710286-1710305 | None:intergenic | 35.0% |
| ! | TCTTAATGCTGATTGTGTTG+TGG | - | chr1_1:1710394-1710413 | Msa0000560:intron | 35.0% |
| TGCACTTAATAGAATTGCTG+TGG | - | chr1_1:1710430-1710449 | Msa0000560:intron | 35.0% | |
| AGACATCACAGTAGAAACTA+GGG | + | chr1_1:1710498-1710517 | None:intergenic | 35.0% | |
| GTCATTAGAAAATGGCATCT+TGG | + | chr1_1:1710599-1710618 | None:intergenic | 35.0% | |
| !!! | AGATGCCATTTTCTAATGAC+AGG | - | chr1_1:1710599-1710618 | Msa0000560:CDS | 35.0% |
| GGAGGAAATATAAAATAGGG+GGG | + | chr1_1:1710794-1710813 | None:intergenic | 35.0% | |
| CGGAGGAAATATAAAATAGG+GGG | + | chr1_1:1710795-1710814 | None:intergenic | 35.0% | |
| TATTTCCTCCGTAATCTGAT+CGG | - | chr1_1:1710804-1710823 | Msa0000560:CDS | 35.0% | |
| TTATGGTCTCTTCTTATGCA+CGG | - | chr1_1:1710982-1711001 | Msa0000560:intron | 35.0% | |
| GACTTGAGTATAAGATTGCT+TGG | + | chr1_1:1711365-1711384 | None:intergenic | 35.0% | |
| TAATCTTCAACTGATGGTTG+TGG | - | chr1_1:1711406-1711425 | Msa0000560:intron | 35.0% | |
| !! | TCTTATCTTGCTTTTCTGGT+AGG | - | chr1_1:1711737-1711756 | Msa0000560:intron | 35.0% |
| ! | TTGAACATATGGGGATTTTC+TGG | + | chr1_1:1711772-1711791 | None:intergenic | 35.0% |
| TGTGTGCAGTTTGAACATAT+GGG | + | chr1_1:1711782-1711801 | None:intergenic | 35.0% | |
| ATATGTTCAAACTGCACACA+GGG | - | chr1_1:1711782-1711801 | Msa0000560:intron | 35.0% | |
| CAATCAGATGTAATGCAGAA+AGG | + | chr1_1:1711858-1711877 | None:intergenic | 35.0% | |
| TGCATTACATCTGATTGCAT+TGG | - | chr1_1:1711861-1711880 | Msa0000560:intron | 35.0% | |
| ! | TAGTATGACTAGCCAACATA+AGG | + | chr1_1:1711988-1712007 | None:intergenic | 35.0% |
| GACATTTACTGAAAAGGTGA+CGG | + | chr1_1:1712015-1712034 | None:intergenic | 35.0% | |
| GAACACTTACAGCAAACATT+GGG | + | chr1_1:1712096-1712115 | None:intergenic | 35.0% | |
| TTATCCTGTCCAATTGTCAT+TGG | + | chr1_1:1712221-1712240 | None:intergenic | 35.0% | |
| TTGATTCATCAAACTCTGAG+AGG | + | chr1_1:1712247-1712266 | None:intergenic | 35.0% | |
| GAGTTTGGTTGACGAATATA+AGG | - | chr1_1:1712280-1712299 | Msa0000560:intron | 35.0% | |
| TCCCCAGATTATATCAAATG+GGG | - | chr1_1:1712311-1712330 | Msa0000560:intron | 35.0% | |
| TCCCCATTTGATATAATCTG+GGG | + | chr1_1:1712315-1712334 | None:intergenic | 35.0% | |
| TTATATCAAATGGGGAATGG+AGG | - | chr1_1:1712319-1712338 | Msa0000560:intron | 35.0% | |
| GATCCGAATAATATGATGAC+AGG | - | chr1_1:1712418-1712437 | Msa0000560:intron | 35.0% | |
| GAATAATATGATGACAGGAG+AGG | - | chr1_1:1712423-1712442 | Msa0000560:intron | 35.0% | |
| !!! | TGGCTCATTTTGAGTTAGAA+AGG | + | chr1_1:1712706-1712725 | None:intergenic | 35.0% |
| AAGATTCTTGTGTACTTGAC+TGG | - | chr1_1:1712735-1712754 | Msa0000560:CDS | 35.0% | |
| TACAGTGGTATTCTGTACTA+CGG | + | chr1_1:1712888-1712907 | None:intergenic | 35.0% | |
| CTGAAAACGAATAACTACAG+TGG | + | chr1_1:1712903-1712922 | None:intergenic | 35.0% | |
| AAAAGCAGAGTGCAATTTGG+CGG | - | chr1_1:1708062-1708081 | Msa0000560:three_prime_UTR | 40.0% | |
| !!! | GCATTTTTTTAGGGTTTCGG+AGG | + | chr1_1:1708249-1708268 | None:intergenic | 40.0% |
| TGAAGTGTGATTATCTCTCG+AGG | + | chr1_1:1708271-1708290 | None:intergenic | 40.0% | |
| AAACAACTCTGTCTCGAACA+TGG | - | chr1_1:1708331-1708350 | Msa0000560:intron | 40.0% | |
| GAACATGGTATCAGCAAAGA+CGG | - | chr1_1:1708346-1708365 | Msa0000560:intron | 40.0% | |
| ! | AAGTCTTATCCGACTAAGTG+AGG | + | chr1_1:1708712-1708731 | None:intergenic | 40.0% |
| CAATTCCTGTAATCAAGGGA+AGG | - | chr1_1:1709047-1709066 | Msa0000560:CDS | 40.0% | |
| CAAGGGAAGGAATATGTGTA+AGG | - | chr1_1:1709060-1709079 | Msa0000560:CDS | 40.0% | |
| AAGGAATATGTGTAAGGGCA+AGG | - | chr1_1:1709066-1709085 | Msa0000560:CDS | 40.0% | |
| GAAACCAAGAGGAGAAAGAT+CGG | + | chr1_1:1709162-1709181 | None:intergenic | 40.0% | |
| CCCAGTCAGTGTATAAACTA+AGG | + | chr1_1:1709260-1709279 | None:intergenic | 40.0% | |
| ! | TTTATACACTGACTGGGAGT+TGG | - | chr1_1:1709263-1709282 | Msa0000560:intron | 40.0% |
| ATAACTAGAAAGGCCTCAGA+TGG | - | chr1_1:1709511-1709530 | Msa0000560:intron | 40.0% | |
| ! | GGTAGTTTTTGTACAGTACC+TGG | - | chr1_1:1709567-1709586 | Msa0000560:intron | 40.0% |
| CATTATAATCCTGATAGGCC+AGG | - | chr1_1:1709616-1709635 | Msa0000560:intron | 40.0% | |
| GAATCAATTGTGAACCTGTG+TGG | - | chr1_1:1709729-1709748 | Msa0000560:intron | 40.0% | |
| ATGATTGACAGAGAAGCAGA+TGG | - | chr1_1:1709800-1709819 | Msa0000560:intron | 40.0% | |
| CTATGTCATTCAATTGCTGG+AGG | - | chr1_1:1709848-1709867 | Msa0000560:intron | 40.0% | |
| GATGTCCTAAGGCAAATACT+AGG | + | chr1_1:1709905-1709924 | None:intergenic | 40.0% | |
| CTTAAGAACCGACAATTTGC+TGG | - | chr1_1:1709984-1710003 | Msa0000560:intron | 40.0% | |
| TCAAGAGCGGAAATTGAACA+GGG | - | chr1_1:1710022-1710041 | Msa0000560:CDS | 40.0% | |
| CCCATACCTGCATAAATGAA+TGG | + | chr1_1:1710236-1710255 | None:intergenic | 40.0% | |
| GGTCATTCAGAGTCTCTAAA+AGG | + | chr1_1:1710265-1710284 | None:intergenic | 40.0% | |
| TGACCGATACAGCAAAAAAC+TGG | - | chr1_1:1710280-1710299 | Msa0000560:intron | 40.0% | |
| CACTTGTCTCCATTTGGTTA+GGG | + | chr1_1:1710325-1710344 | None:intergenic | 40.0% | |
| TCACTTGTCTCCATTTGGTT+AGG | + | chr1_1:1710326-1710345 | None:intergenic | 40.0% | |
| CAGACATCACAGTAGAAACT+AGG | + | chr1_1:1710499-1710518 | None:intergenic | 40.0% | |
| !! | TCTTGGTGTTGGAATCAAAG+AGG | + | chr1_1:1710582-1710601 | None:intergenic | 40.0% |
| ! | AGAAAATGGCATCTTGGTGT+TGG | + | chr1_1:1710593-1710612 | None:intergenic | 40.0% |
| ATCGGATGATATTTCCTTGC+AGG | - | chr1_1:1710822-1710841 | Msa0000560:CDS | 40.0% | |
| ! | ACGAATTACATTAGCCTGCA+AGG | + | chr1_1:1710839-1710858 | None:intergenic | 40.0% |
| ATTGACATTAAGTTCCTGGC+AGG | - | chr1_1:1710950-1710969 | Msa0000560:intron | 40.0% | |
| CATAATATTCTTTGCCTGCC+AGG | + | chr1_1:1710967-1710986 | None:intergenic | 40.0% | |
| CTGGCAGGCAAAGAATATTA+TGG | - | chr1_1:1710965-1710984 | Msa0000560:intron | 40.0% | |
| !! | TTTAGCTTGGCTAGCATCTT+TGG | + | chr1_1:1711009-1711028 | None:intergenic | 40.0% |
| TCTGAATATCATCCAAGGAG+AGG | - | chr1_1:1711040-1711059 | Msa0000560:intron | 40.0% | |
| GTGTGCAGTTTGAACATATG+GGG | + | chr1_1:1711781-1711800 | None:intergenic | 40.0% | |
| CTGTGTGCAGTTTGAACATA+TGG | + | chr1_1:1711783-1711802 | None:intergenic | 40.0% | |
| CATATGTTCAAACTGCACAC+AGG | - | chr1_1:1711781-1711800 | Msa0000560:intron | 40.0% | |
| GGCTCAGACATTTACTGAAA+AGG | + | chr1_1:1712021-1712040 | None:intergenic | 40.0% | |
| TCCTTCTCAACTTATCGTAC+TGG | + | chr1_1:1712042-1712061 | None:intergenic | 40.0% | |
| GGAACACTTACAGCAAACAT+TGG | + | chr1_1:1712097-1712116 | None:intergenic | 40.0% | |
| CTGATGCTACCAATGACAAT+TGG | - | chr1_1:1712209-1712228 | Msa0000560:intron | 40.0% | |
| GATATAATCTGGGGATTCAC+AGG | + | chr1_1:1712306-1712325 | None:intergenic | 40.0% | |
| ACTCGAAGAAAACCTGCTTA+TGG | + | chr1_1:1712518-1712537 | None:intergenic | 40.0% | |
| !! | GCAATAAGGAAGTGGTTTTG+TGG | - | chr1_1:1712768-1712787 | Msa0000560:CDS | 40.0% |
| !!! | ATAAGGAAGTGGTTTTGTGG+CGG | - | chr1_1:1712771-1712790 | Msa0000560:CDS | 40.0% |
| ACTATTGACACGAAGAATGC+TGG | - | chr1_1:1713009-1713028 | Msa0000560:five_prime_UTR | 40.0% | |
| GGTTGAAAAGTAGAGAGTGG+TGG | - | chr1_1:1708083-1708102 | Msa0000560:three_prime_UTR | 45.0% | |
| ACACTTCAAGTGGGACAATG+CGG | - | chr1_1:1708283-1708302 | Msa0000560:three_prime_UTR | 45.0% | |
| ACCAGATCGGTATGGAATTC+TGG | - | chr1_1:1708308-1708327 | Msa0000560:three_prime_UTR | 45.0% | |
| TCCAGAATTCCATACCGATC+TGG | + | chr1_1:1708312-1708331 | None:intergenic | 45.0% | |
| ! | ACTATTTTACCCATGCTCGC+TGG | - | chr1_1:1708447-1708466 | Msa0000560:intron | 45.0% |
| TTTGTTGCTGATCATGGTGG+TGG | - | chr1_1:1708620-1708639 | Msa0000560:CDS | 45.0% | |
| !! | TGGTGGTGCTGGTAACAATT+GGG | - | chr1_1:1708637-1708656 | Msa0000560:CDS | 45.0% |
| TTATCCGACTAAGTGAGGTC+GGG | + | chr1_1:1708707-1708726 | None:intergenic | 45.0% | |
| CTTATCCGACTAAGTGAGGT+CGG | + | chr1_1:1708708-1708727 | None:intergenic | 45.0% | |
| AGGGCAAGGTGTATAAGAGA+AGG | - | chr1_1:1709080-1709099 | Msa0000560:CDS | 45.0% | |
| ! | GAGAGGGTGTGAATTATGTG+AGG | - | chr1_1:1709114-1709133 | Msa0000560:intron | 45.0% |
| GGGTGTGAATTATGTGAGGA+TGG | - | chr1_1:1709118-1709137 | Msa0000560:intron | 45.0% | |
| CAATCAATGACTCTGGTGTC+TGG | - | chr1_1:1709379-1709398 | Msa0000560:intron | 45.0% | |
| AAGGTTGACGATGTTCCTGT+CGG | + | chr1_1:1709538-1709557 | None:intergenic | 45.0% | |
| CTCAAGAGCGGAAATTGAAC+AGG | - | chr1_1:1710021-1710040 | Msa0000560:intron | 45.0% | |
| CAAGAGCGGAAATTGAACAG+GGG | - | chr1_1:1710023-1710042 | Msa0000560:CDS | 45.0% | |
| AAGAGCGGAAATTGAACAGG+GGG | - | chr1_1:1710024-1710043 | Msa0000560:CDS | 45.0% | |
| CAGTGTGTTCCCTAACCAAA+TGG | - | chr1_1:1710313-1710332 | Msa0000560:intron | 45.0% | |
| CCACATCACTTGTCTCCATT+TGG | + | chr1_1:1710331-1710350 | None:intergenic | 45.0% | |
| CCAAATGGAGACAAGTGATG+TGG | - | chr1_1:1710328-1710347 | Msa0000560:intron | 45.0% | |
| AATGGAGACAAGTGATGTGG+TGG | - | chr1_1:1710331-1710350 | Msa0000560:intron | 45.0% | |
| ATAACGAAGAGTGGTTGTGC+TGG | + | chr1_1:1710522-1710541 | None:intergenic | 45.0% | |
| ACAACCACTCTTCGTTATCC+AGG | - | chr1_1:1710524-1710543 | Msa0000560:CDS | 45.0% | |
| GTATCCTGGATAACGAAGAG+TGG | + | chr1_1:1710531-1710550 | None:intergenic | 45.0% | |
| GTGTTGGAATCAAAGAGGCA+AGG | + | chr1_1:1710577-1710596 | None:intergenic | 45.0% | |
| ATCATCCGATCAGATTACGG+AGG | + | chr1_1:1710812-1710831 | None:intergenic | 45.0% | |
| AGGTTCATGAGAGTTTGCAG+AGG | - | chr1_1:1711581-1711600 | Msa0000560:intron | 45.0% | |
| TCGCATACCTGAATACTAGC+AGG | + | chr1_1:1711646-1711665 | None:intergenic | 45.0% | |
| GTATTCAGGTATGCGATCTG+TGG | - | chr1_1:1711650-1711669 | Msa0000560:intron | 45.0% | |
| ! | GCCAGTACGATAAGTTGAGA+AGG | - | chr1_1:1712038-1712057 | Msa0000560:intron | 45.0% |
| TGCTGCATCTGTTCTGTACT+TGG | - | chr1_1:1712151-1712170 | Msa0000560:intron | 45.0% | |
| GCATCTGTTCTGTACTTGGA+TGG | - | chr1_1:1712155-1712174 | Msa0000560:intron | 45.0% | |
| GCTACCAATGACAATTGGAC+AGG | - | chr1_1:1712214-1712233 | Msa0000560:intron | 45.0% | |
| ATCAAATGGGGAATGGAGGT+AGG | - | chr1_1:1712323-1712342 | Msa0000560:intron | 45.0% | |
| TTCTTGTGTACTTGACTGGC+AGG | - | chr1_1:1712739-1712758 | Msa0000560:CDS | 45.0% | |
| AGTGGTATTCTGTACTACGG+CGG | + | chr1_1:1712885-1712904 | None:intergenic | 45.0% | |
| GGCGGTTGAAAAGTAGAGAG+TGG | - | chr1_1:1708080-1708099 | Msa0000560:three_prime_UTR | 50.0% | |
| GGACAATGCGGAAACCAGAT+CGG | - | chr1_1:1708295-1708314 | Msa0000560:three_prime_UTR | 50.0% | |
| ATGCGGAAACCAGATCGGTA+TGG | - | chr1_1:1708300-1708319 | Msa0000560:three_prime_UTR | 50.0% | |
| CCTGAGTAGCGAAATCTTCG+AGG | + | chr1_1:1708375-1708394 | None:intergenic | 50.0% | |
| CCTCGAAGATTTCGCTACTC+AGG | - | chr1_1:1708372-1708391 | Msa0000560:intron | 50.0% | |
| !! | GTGGTGGTGCTGGTAACAAT+TGG | - | chr1_1:1708636-1708655 | Msa0000560:CDS | 50.0% |
| ! | GCTGGTAACAATTGGGCTAG+TGG | - | chr1_1:1708644-1708663 | Msa0000560:CDS | 50.0% |
| ACTAAGTGAGGTCGGGTACA+TGG | + | chr1_1:1708700-1708719 | None:intergenic | 50.0% | |
| TGTACCCGACCTCACTTAGT+CGG | - | chr1_1:1708700-1708719 | Msa0000560:intron | 50.0% | |
| CAAGAGGAGAAAGATCGGAG+AGG | + | chr1_1:1709157-1709176 | None:intergenic | 50.0% | |
| CTCTCCGATCTTTCTCCTCT+TGG | - | chr1_1:1709155-1709174 | Msa0000560:intron | 50.0% | |
| GACTCTGGTGTCTGGTCTAT+TGG | - | chr1_1:1709387-1709406 | Msa0000560:intron | 50.0% | |
| TGACTAAGACTCCTATGGCC+TGG | + | chr1_1:1709637-1709656 | None:intergenic | 50.0% | |
| AGATGGCAGTGACAGTCTTG+AGG | - | chr1_1:1709817-1709836 | Msa0000560:intron | 50.0% | |
| GATGGCAGTGACAGTCTTGA+GGG | - | chr1_1:1709818-1709837 | Msa0000560:intron | 50.0% | |
| CATTCAATTGCTGGAGGGAC+AGG | - | chr1_1:1709854-1709873 | Msa0000560:intron | 50.0% | |
| AGAGCGGAAATTGAACAGGG+GGG | - | chr1_1:1710025-1710044 | Msa0000560:CDS | 50.0% | |
| AGGATATACGCCTCTGACAG+TGG | - | chr1_1:1710619-1710638 | Msa0000560:CDS | 50.0% | |
| CCTCATGACATCAAGCACAG+TGG | + | chr1_1:1710866-1710885 | None:intergenic | 50.0% | |
| CCACTGTGCTTGATGTCATG+AGG | - | chr1_1:1710863-1710882 | Msa0000560:intron | 50.0% | |
| TGTCATGAGGAGACTTCTGC+AGG | - | chr1_1:1710876-1710895 | Msa0000560:intron | 50.0% | |
| GTTGAGCTCATTTGGTACCG+TGG | - | chr1_1:1711171-1711190 | Msa0000560:intron | 50.0% | |
| ! | GAGGCAAAAGTATGCAGCTG+TGG | + | chr1_1:1711694-1711713 | None:intergenic | 50.0% |
| GTTCAAACTGCACACAGGGT+AGG | - | chr1_1:1711786-1711805 | Msa0000560:intron | 50.0% | |
| ! | TTAGGTCAGCGGCCTTATGT+TGG | - | chr1_1:1711973-1711992 | Msa0000560:intron | 50.0% |
| GGTGACGAGCAATAAGGAAG+TGG | - | chr1_1:1712760-1712779 | Msa0000560:CDS | 50.0% | |
| ACACGAAGAATGCTGGCAAG+TGG | - | chr1_1:1713016-1713035 | Msa0000560:five_prime_UTR | 50.0% | |
| !! | TTGGGCTAGTGGCTACCATC+AGG | - | chr1_1:1708655-1708674 | Msa0000560:CDS | 55.0% |
| AGTGAGGTCGGGTACATGGA+TGG | + | chr1_1:1708696-1708715 | None:intergenic | 55.0% | |
| TGTTCCTGTCGGACCATCTG+AGG | + | chr1_1:1709527-1709546 | None:intergenic | 55.0% | |
| ATCCTGATAGGCCAGGCCAT+AGG | - | chr1_1:1709623-1709642 | Msa0000560:intron | 55.0% | |
| GAGCGGAAATTGAACAGGGG+GGG | - | chr1_1:1710026-1710045 | Msa0000560:CDS | 55.0% | |
| ACCTGACGTTCCACTGTCAG+AGG | + | chr1_1:1710632-1710651 | None:intergenic | 55.0% | |
| GAGTTGGGTCAACCTCTCCT+TGG | + | chr1_1:1711055-1711074 | None:intergenic | 55.0% | |
| AGGAGAGGTTGACCCAACTC+AGG | - | chr1_1:1711055-1711074 | Msa0000560:intron | 55.0% | |
| GTGGGGTCCTGCTAGTATTC+AGG | - | chr1_1:1711636-1711655 | Msa0000560:intron | 55.0% | |
| GGCACAAGCACAACCCTAGA+AGG | + | chr1_1:1712653-1712672 | None:intergenic | 55.0% | |
| CTGGCAGGTGACGAGCAATA+AGG | - | chr1_1:1712754-1712773 | Msa0000560:CDS | 55.0% | |
| !! | GCTGATCATGGTGGTGGTGC+TGG | - | chr1_1:1708626-1708645 | Msa0000560:CDS | 60.0% |
| AAGGCCTCAGATGGTCCGAC+AGG | - | chr1_1:1709520-1709539 | Msa0000560:intron | 60.0% | |
| CTCCTATGGCCTGGCCTATC+AGG | + | chr1_1:1709628-1709647 | None:intergenic | 60.0% | |
| ATTGCTGGAGGGACAGGCTC+AGG | - | chr1_1:1709860-1709879 | Msa0000560:intron | 60.0% | |
| GCCTCTGACAGTGGAACGTC+AGG | - | chr1_1:1710628-1710647 | Msa0000560:intron | 60.0% | |
| ! | TACCCATGCTCGCTGGCTGC+AGG | - | chr1_1:1708454-1708473 | Msa0000560:intron | 65.0% |
| ! | ACCCATGCTCGCTGGCTGCA+GGG | - | chr1_1:1708455-1708474 | Msa0000560:intron | 65.0% |
| TCCCTGCAGCCAGCGAGCAT+GGG | + | chr1_1:1708459-1708478 | None:intergenic | 65.0% | |
| ACAGGAGAGGGCAGTGCTGC+AGG | - | chr1_1:1712436-1712455 | Msa0000560:intron | 65.0% | |
| GGGCAGTGCTGCAGGATCAC+TGG | - | chr1_1:1712444-1712463 | Msa0000560:intron | 65.0% | |
| CTCCCTGCAGCCAGCGAGCA+TGG | + | chr1_1:1708460-1708479 | None:intergenic | 70.0% | |
| ! | CATGCTCGCTGGCTGCAGGG+AGG | - | chr1_1:1708458-1708477 | Msa0000560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1708055 | 1713043 | 1708055 | ID=Msa0000560;Name=Msa0000560 |
| chr1_1 | mRNA | 1708055 | 1713043 | 1708055 | ID=Msa0000560-mRNA-1;Parent=Msa0000560;Name=Msa0000560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=210|0.83|0.76|1|0.66|0.46|13|292|454 |
| chr1_1 | exon | 1708055 | 1708337 | 1708055 | ID=Msa0000560-mRNA-1:exon:300;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1708603 | 1708680 | 1708603 | ID=Msa0000560-mRNA-1:exon:299;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1708758 | 1708862 | 1708758 | ID=Msa0000560-mRNA-1:exon:298;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1708993 | 1709121 | 1708993 | ID=Msa0000560-mRNA-1:exon:297;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1709295 | 1709339 | 1709295 | ID=Msa0000560-mRNA-1:exon:296;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1709441 | 1709515 | 1709441 | ID=Msa0000560-mRNA-1:exon:295;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1710022 | 1710126 | 1710022 | ID=Msa0000560-mRNA-1:exon:294;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1710201 | 1710254 | 1710201 | ID=Msa0000560-mRNA-1:exon:293;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1710449 | 1710643 | 1710449 | ID=Msa0000560-mRNA-1:exon:292;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1710650 | 1710849 | 1710650 | ID=Msa0000560-mRNA-1:exon:291;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1711217 | 1711328 | 1711217 | ID=Msa0000560-mRNA-1:exon:290;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1712476 | 1712622 | 1712476 | ID=Msa0000560-mRNA-1:exon:289;Parent=Msa0000560-mRNA-1 |
| chr1_1 | exon | 1712705 | 1713043 | 1712705 | ID=Msa0000560-mRNA-1:exon:288;Parent=Msa0000560-mRNA-1 |
| chr1_1 | five_prime_UTR | 1712834 | 1713043 | 1712834 | ID=Msa0000560-mRNA-1:five_prime_utr;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1712705 | 1712833 | 1712705 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1712476 | 1712622 | 1712476 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1711217 | 1711328 | 1711217 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1710650 | 1710849 | 1710650 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1710449 | 1710643 | 1710449 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1710201 | 1710254 | 1710201 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1710022 | 1710126 | 1710022 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1709441 | 1709515 | 1709441 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1709295 | 1709339 | 1709295 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1708993 | 1709121 | 1708993 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1708758 | 1708862 | 1708758 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | CDS | 1708612 | 1708680 | 1708612 | ID=Msa0000560-mRNA-1:cds;Parent=Msa0000560-mRNA-1 |
| chr1_1 | three_prime_UTR | 1708603 | 1708611 | 1708603 | ID=Msa0000560-mRNA-1:three_prime_utr;Parent=Msa0000560-mRNA-1 |
| chr1_1 | three_prime_UTR | 1708055 | 1708337 | 1708055 | ID=Msa0000560-mRNA-1:three_prime_utr;Parent=Msa0000560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
