Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122890 | XP_024635206.2 | 86.607 | 336 | 14 | 1 | 1 | 305 | 1 | 336 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122890 | sp|Q54M20|TTC4_DICDI | 27.891 | 294 | 193 | 4 | 28 | 305 | 87 | 377 | 3.60e-29 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122890 | I3T7T9 | 86.310 | 336 | 15 | 1 | 1 | 305 | 1 | 336 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0122890 | Msa0167610 | 0.851389 | 9.164037e-61 | -8.615850e-47 |
| Msa0122890 | Msa0240150 | 0.805716 | 1.167226e-49 | -8.615850e-47 |
| Msa0122890 | Msa0340090 | 0.800216 | 1.598989e-48 | -8.615850e-47 |
| Msa0122890 | Msa0979730 | 0.804394 | 2.206265e-49 | -8.615850e-47 |
| Msa0122890 | Msa1375170 | 0.839340 | 1.680620e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122890 | MtrunA17_Chr1g0183161 | 95.708 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 1.61e-164 | 460 |
| Msa0122890 | MtrunA17_Chr1g0183151 | 86.420 | 81 | 6 | 1 | 225 | 305 | 36 | 111 | 2.37e-42 | 144 |
| Msa0122890 | MtrunA17_Chr8g0358301 | 91.935 | 62 | 5 | 0 | 171 | 232 | 3 | 64 | 1.94e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122890 | AT1G04130.1 | 59.050 | 337 | 105 | 2 | 1 | 305 | 1 | 336 | 6.99e-140 | 401 |
| Msa0122890 | AT1G04130.2 | 53.750 | 240 | 78 | 2 | 98 | 305 | 1 | 239 | 2.51e-83 | 254 |
| Msa0122890 | AT1G56440.2 | 34.337 | 166 | 93 | 7 | 35 | 198 | 78 | 229 | 4.18e-13 | 70.5 |
| Msa0122890 | AT1G56440.1 | 34.337 | 166 | 93 | 7 | 35 | 198 | 88 | 239 | 4.51e-13 | 70.5 |
Find 85 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACGAAACTGCGTTTA+AGG | 0.137028 | 1_3:-49742308 | Msa0122890:five_prime_UTR |
| GTAACTAGATTCAAGATTTC+TGG | 0.161972 | 1_3:-49738645 | Msa0122890:exon |
| CATTTACTTTGATCCATTTC+GGG | 0.194904 | 1_3:+49738927 | None:intergenic |
| CTTCTTCAATTCCTCATTCT+TGG | 0.218109 | 1_3:+49740988 | None:intergenic |
| TCATTTACTTTGATCCATTT+CGG | 0.218966 | 1_3:+49738926 | None:intergenic |
| AAAGATAATTTGTGTTGTTT+TGG | 0.283236 | 1_3:-49738535 | Msa0122890:three_prime_UTR |
| CTCAATTATAATGCTAGAAT+TGG | 0.284519 | 1_3:-49738609 | Msa0122890:three_prime_UTR |
| TCTTACCCATCTTCACATAT+TGG | 0.336932 | 1_3:+49742015 | None:intergenic |
| TTGTCAAATGGGTCTTCATT+TGG | 0.352533 | 1_3:-49741014 | Msa0122890:CDS |
| GCAGATTGAAACTAAGATAC+TGG | 0.354334 | 1_3:-49740957 | Msa0122890:CDS |
| TTCTTCAATTCCTCATTCTT+GGG | 0.354589 | 1_3:+49740989 | None:intergenic |
| ACTCCTTCAATATCTATTAG+AGG | 0.356893 | 1_3:-49740050 | Msa0122890:CDS |
| GCCCATGTTAATTTGCTACT+TGG | 0.360457 | 1_3:-49741900 | Msa0122890:CDS |
| CCTATGTATCGAGAACTTAC+TGG | 0.383520 | 1_3:-49740569 | Msa0122890:CDS |
| GCTACTAGTGGGGAAGTTAT+TGG | 0.385514 | 1_3:-49740016 | Msa0122890:CDS |
| TTTGAATTTGCTATAAAAGC+TGG | 0.386477 | 1_3:+49738730 | None:intergenic |
| ATCTCAGGAATGATGAAATT+AGG | 0.386785 | 1_3:+49738872 | None:intergenic |
| TCCTGAGATCCCAGGTGAAA+TGG | 0.390954 | 1_3:-49738858 | Msa0122890:intron |
| ACCATTTCACCTGGGATCTC+AGG | 0.398144 | 1_3:+49738857 | None:intergenic |
| GAAAATAGAGGCTTGAAGAT+TGG | 0.400992 | 1_3:-49740596 | Msa0122890:CDS |
| GTTCATCAGGCTCCCCGAAA+TGG | 0.404916 | 1_3:-49738940 | Msa0122890:intron |
| GCAAATTCAAAGATGGAAAG+TGG | 0.409006 | 1_3:-49738718 | Msa0122890:CDS |
| TGATAGCAGCAATGGCTTCA+AGG | 0.419657 | 1_3:+49742149 | None:intergenic |
| GTACACACCTTTATATTTGA+AGG | 0.424038 | 1_3:+49741828 | None:intergenic |
| ACAAAAGTAACATCCTTCAT+TGG | 0.426238 | 1_3:-49740526 | Msa0122890:CDS |
| ATCGAGAACTTACTGGGTTA+AGG | 0.432106 | 1_3:-49740562 | Msa0122890:CDS |
| ATTCAACGAAAAGGAAGCTT+TGG | 0.437825 | 1_3:+49741060 | None:intergenic |
| AGCACAAGACTATTGTCAAA+TGG | 0.442253 | 1_3:-49741026 | Msa0122890:CDS |
| GTTTCTGCAATAGAAAATAG+AGG | 0.447295 | 1_3:-49740608 | Msa0122890:CDS |
| GGGTAACCAATATGTGAAGA+TGG | 0.450218 | 1_3:-49742021 | Msa0122890:CDS |
| GCTTCCTTTCATACACTTGG+AGG | 0.454416 | 1_3:+49738692 | None:intergenic |
| GTTGTCCCCTTCAAATATAA+AGG | 0.456100 | 1_3:-49741835 | Msa0122890:intron |
| GTTGCTTCCTTTCATACACT+TGG | 0.457940 | 1_3:+49738689 | None:intergenic |
| GTAAGGATTGATATCAAAAC+GGG | 0.459979 | 1_3:+49738376 | None:intergenic |
| AATTATAATGCTAGAATTGG+AGG | 0.477899 | 1_3:-49738606 | Msa0122890:three_prime_UTR |
| TGTAAGGATTGATATCAAAA+CGG | 0.482878 | 1_3:+49738375 | None:intergenic |
| AATAACTGTGTACGATGAAG+TGG | 0.487279 | 1_3:+49742333 | None:intergenic |
| TCTGCATACAAAAGAAGAAC+AGG | 0.488330 | 1_3:+49740503 | None:intergenic |
| GCACAAGACTATTGTCAAAT+GGG | 0.491678 | 1_3:-49741025 | Msa0122890:CDS |
| TTCCCTCTAATAGATATTGA+AGG | 0.495729 | 1_3:+49740047 | None:intergenic |
| GATGGCGCTATGGATGGAAA+AGG | 0.498578 | 1_3:-49742206 | Msa0122890:CDS |
| ATCCAACGAATTCAACGAAA+AGG | 0.499699 | 1_3:+49741051 | None:intergenic |
| ATCTTCAGCTTTAGAACTCA+AGG | 0.507144 | 1_3:-49742122 | Msa0122890:intron |
| TGCCCTTGTGTAGCAATCAA+TGG | 0.510437 | 1_3:+49741977 | None:intergenic |
| TACACACCTTTATATTTGAA+GGG | 0.513059 | 1_3:+49741829 | None:intergenic |
| AAAGAAGAACAGGCCAATGA+AGG | 0.520736 | 1_3:+49740513 | None:intergenic |
| TATCAAAACGGGAACTAGAA+TGG | 0.522411 | 1_3:+49738387 | None:intergenic |
| AACCTTAAACGCAGTTTCGT+TGG | 0.524755 | 1_3:+49742306 | None:intergenic |
| AGATTCTTTGATAGCAGCAA+TGG | 0.528920 | 1_3:+49742141 | None:intergenic |
| TCATTTGGATCCCAAGAATG+AGG | 0.529648 | 1_3:-49740999 | Msa0122890:CDS |
| CTATGTATCGAGAACTTACT+GGG | 0.529659 | 1_3:-49740568 | Msa0122890:CDS |
| TCCATCCATAGCGCCATCGT+TGG | 0.535729 | 1_3:+49742211 | None:intergenic |
| TAGGCTCTTTCAGAACATCA+TGG | 0.536783 | 1_3:+49738891 | None:intergenic |
| ACCAACGATGGCGCTATGGA+TGG | 0.539384 | 1_3:-49742212 | Msa0122890:exon |
| GGCAACCAACGATGGCGCTA+TGG | 0.541170 | 1_3:-49742216 | Msa0122890:exon |
| GAAATCCTCAATGAAGTCAC+TGG | 0.541468 | 1_3:+49740472 | None:intergenic |
| TAGTGGAAAACCATTTCACC+TGG | 0.543377 | 1_3:+49738848 | None:intergenic |
| GGCTCCTCCAAGTGTATGAA+AGG | 0.544448 | 1_3:-49738696 | Msa0122890:CDS |
| TAACGCTATTGCAGAGGCAA+AGG | 0.546218 | 1_3:-49740906 | Msa0122890:intron |
| CCAGTAAGTTCTCGATACAT+AGG | 0.546495 | 1_3:+49740569 | None:intergenic |
| TTCCAAGTAGCAAATTAACA+TGG | 0.546678 | 1_3:+49741898 | None:intergenic |
| TTCATCATTCCTGAGATCCC+AGG | 0.547369 | 1_3:-49738866 | Msa0122890:CDS |
| CTCCTTCAATATCTATTAGA+GGG | 0.550231 | 1_3:-49740049 | Msa0122890:CDS |
| AGAATTGGAGGAACCTCGCA+TGG | 0.558123 | 1_3:-49738594 | Msa0122890:three_prime_UTR |
| GGTAACCAATATGTGAAGAT+GGG | 0.559754 | 1_3:-49742020 | Msa0122890:CDS |
| AATGGATCAAAGTAAATGAA+AGG | 0.566088 | 1_3:-49738922 | Msa0122890:CDS |
| CAAATTCAAAGATGGAAAGT+GGG | 0.573070 | 1_3:-49738717 | Msa0122890:CDS |
| GAACTGCAGCAGCTACTAGT+GGG | 0.574587 | 1_3:-49740027 | Msa0122890:CDS |
| ATGGCGCTATGGATGGAAAA+GGG | 0.580044 | 1_3:-49742205 | Msa0122890:CDS |
| ACTTGGGACACACACAGACA+AGG | 0.584351 | 1_3:-49738419 | Msa0122890:three_prime_UTR |
| ACACACCTTTATATTTGAAG+GGG | 0.595045 | 1_3:+49741830 | None:intergenic |
| GGAACTGCAGCAGCTACTAG+TGG | 0.596282 | 1_3:-49740028 | Msa0122890:CDS |
| TCCAAGTAGCAAATTAACAT+GGG | 0.601319 | 1_3:+49741899 | None:intergenic |
| ATTTACTTTGATCCATTTCG+GGG | 0.610669 | 1_3:+49738928 | None:intergenic |
| TATGTCCAGTGACTTCATTG+AGG | 0.613206 | 1_3:-49740477 | Msa0122890:CDS |
| TGAAGAGAAAGACGCAGTTG+AGG | 0.626108 | 1_3:-49739990 | Msa0122890:CDS |
| ATGCCATTGATTGCTACACA+AGG | 0.631471 | 1_3:-49741980 | Msa0122890:CDS |
| CTTGGGACACACACAGACAA+GGG | 0.643268 | 1_3:-49738418 | Msa0122890:three_prime_UTR |
| AGTTTCTAACGCTATTGCAG+AGG | 0.653391 | 1_3:-49740912 | Msa0122890:CDS |
| ATAACTGTGTACGATGAAGT+GGG | 0.658121 | 1_3:+49742334 | None:intergenic |
| AGAATAGATACATCCATGCG+AGG | 0.679215 | 1_3:+49738581 | None:intergenic |
| TGCCATTGATTGCTACACAA+GGG | 0.679278 | 1_3:-49741979 | Msa0122890:CDS |
| AACTGCAGCAGCTACTAGTG+GGG | 0.680793 | 1_3:-49740026 | Msa0122890:CDS |
| AGTGGAAAACCATTTCACCT+GGG | 0.681775 | 1_3:+49738849 | None:intergenic |
| AAGGTGAACCGAAAACATGT+CGG | 0.696850 | 1_3:+49740442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTAATATTACATTT+TGG | - | chr1_3:49741018-49741037 | Msa0122890:CDS | 10.0% |
| !! | AACAAAACATTTCATATAAA+AGG | + | chr1_3:49740291-49740310 | None:intergenic | 15.0% |
| !!! | ATTCAATGTTTTTAAATTCT+TGG | - | chr1_3:49740989-49741008 | Msa0122890:CDS | 15.0% |
| !!! | TTCTTTTTTGCTTTATAAAA+AGG | + | chr1_3:49741599-49741618 | None:intergenic | 15.0% |
| !!! | AATAATCTTTTTCAGGAAAA+GGG | - | chr1_3:49738656-49738675 | Msa0122890:exon | 20.0% |
| !!! | AATTAAGTTGTTTATCGAAA+CGG | - | chr1_3:49739521-49739540 | Msa0122890:intron | 20.0% |
| !! | TGATGTTTCAATAGTAATAA+TGG | - | chr1_3:49739581-49739600 | Msa0122890:intron | 20.0% |
| !! | CACAATTTATGTTTAAAGAA+GGG | + | chr1_3:49740060-49740079 | None:intergenic | 20.0% |
| !! | TATAAAAGGATATCATATCA+AGG | + | chr1_3:49740277-49740296 | None:intergenic | 20.0% |
| !!! | ATACTAGTTTTGTGTATATA+TGG | - | chr1_3:49740323-49740342 | Msa0122890:intron | 20.0% |
| !! | ATCCAAAACCATAATAAAAA+TGG | + | chr1_3:49740923-49740942 | None:intergenic | 20.0% |
| !! | AGATAAATTAAAGAGAAGAA+TGG | - | chr1_3:49741071-49741090 | Msa0122890:CDS | 20.0% |
| !!! | TTTGAAAACCAATTTTTGAA+TGG | - | chr1_3:49741437-49741456 | Msa0122890:intron | 20.0% |
| !! | AAAGAAATCCATTCAAAAAT+TGG | + | chr1_3:49741448-49741467 | None:intergenic | 20.0% |
| !! | TTAAATACATTCTTTATCGT+TGG | + | chr1_3:49741701-49741720 | None:intergenic | 20.0% |
| !!! | TTTTATAGCAAATTCAAAGA+TGG | - | chr1_3:49741972-49741991 | Msa0122890:CDS | 20.0% |
| !!! | AAAGATAATTTGTGTTGTTT+TGG | - | chr1_3:49742162-49742181 | Msa0122890:CDS | 20.0% |
| !!! | TTTGATTTCAGATTTTTACA+AGG | - | chr1_3:49742205-49742224 | Msa0122890:CDS | 20.0% |
| !!! | CAATAATCTTTTTCAGGAAA+AGG | - | chr1_3:49738655-49738674 | Msa0122890:exon | 25.0% |
| ! | TACACACCTTTATATTTGAA+GGG | + | chr1_3:49738871-49738890 | None:intergenic | 25.0% |
| !! | TAAAGGTGTGTACTTTATTA+TGG | - | chr1_3:49738879-49738898 | Msa0122890:CDS | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr1_3:49738905-49738924 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr1_3:49738906-49738925 | None:intergenic | 25.0% |
| !!! | CTTACATAAGCTATTTCTAT+AGG | - | chr1_3:49738939-49738958 | Msa0122890:intron | 25.0% |
| !!! | TAAGTTTTGTAAGACCAATT+GGG | + | chr1_3:49739091-49739110 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAAGACCAAT+TGG | + | chr1_3:49739092-49739111 | None:intergenic | 25.0% |
| ! | ATGTTATCCTAAACAATACA+TGG | + | chr1_3:49739250-49739269 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAACTCAGTATG+CGG | + | chr1_3:49739461-49739480 | None:intergenic | 25.0% |
| ! | AATGGTAACTGTGATTTATT+AGG | - | chr1_3:49739599-49739618 | Msa0122890:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+GGG | + | chr1_3:49739901-49739920 | None:intergenic | 25.0% |
| ! | GTACAAAATGTTGTCAAATA+GGG | + | chr1_3:49739902-49739921 | None:intergenic | 25.0% |
| ! | AGTACAAAATGTTGTCAAAT+AGG | + | chr1_3:49739903-49739922 | None:intergenic | 25.0% |
| ! | GCACAATTTATGTTTAAAGA+AGG | + | chr1_3:49740061-49740080 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAATTGTGC+AGG | - | chr1_3:49740061-49740080 | Msa0122890:CDS | 25.0% |
| !! | AAAATACGTTTGATAGCTAA+GGG | + | chr1_3:49740359-49740378 | None:intergenic | 25.0% |
| ! | ATTTATTGAGTTATACTACG+AGG | - | chr1_3:49740428-49740447 | Msa0122890:intron | 25.0% |
| !!! | TTTGACATGGTGATATTTTT+TGG | - | chr1_3:49740495-49740514 | Msa0122890:CDS | 25.0% |
| ! | ACTTCATTTCCCTAATATAA+TGG | - | chr1_3:49740814-49740833 | Msa0122890:intron | 25.0% |
| ! | CAGTATGAACCATTATATTA+GGG | + | chr1_3:49740826-49740845 | None:intergenic | 25.0% |
| ! | ACAGTATGAACCATTATATT+AGG | + | chr1_3:49740827-49740846 | None:intergenic | 25.0% |
| ! | ACTGTGTTAAAGTAATAACT+TGG | - | chr1_3:49740842-49740861 | Msa0122890:intron | 25.0% |
| ! | CTGTGTTAAAGTAATAACTT+GGG | - | chr1_3:49740843-49740862 | Msa0122890:intron | 25.0% |
| !!! | AGCCATTTTTATTATGGTTT+TGG | - | chr1_3:49740918-49740937 | Msa0122890:CDS | 25.0% |
| ! | AAAAAGAAAAAAAACTCCCT+TGG | - | chr1_3:49741611-49741630 | Msa0122890:intron | 25.0% |
| ! | TTGTTAAACATATGTGACAA+GGG | + | chr1_3:49741662-49741681 | None:intergenic | 25.0% |
| ! | TTTGTTAAACATATGTGACA+AGG | + | chr1_3:49741663-49741682 | None:intergenic | 25.0% |
| ! | CACATATGTTTAACAAAATG+AGG | - | chr1_3:49741666-49741685 | Msa0122890:intron | 25.0% |
| ! | TCATTTACTTTGATCCATTT+CGG | + | chr1_3:49741774-49741793 | None:intergenic | 25.0% |
| ! | AATGGATCAAAGTAAATGAA+AGG | - | chr1_3:49741775-49741794 | Msa0122890:intron | 25.0% |
| !!! | TTTGAATTTGCTATAAAAGC+TGG | + | chr1_3:49741970-49741989 | None:intergenic | 25.0% |
| ! | CTCAATTATAATGCTAGAAT+TGG | - | chr1_3:49742088-49742107 | Msa0122890:intron | 25.0% |
| ! | AATTATAATGCTAGAATTGG+AGG | - | chr1_3:49742091-49742110 | Msa0122890:intron | 25.0% |
| !!! | GTTTTGGTACATGTATAATT+TGG | - | chr1_3:49742178-49742197 | Msa0122890:CDS | 25.0% |
| !!! | TTCAAATTTCGTTTTTCACT+TGG | - | chr1_3:49742261-49742280 | Msa0122890:five_prime_UTR | 25.0% |
| !!! | TCAAATTTCGTTTTTCACTT+GGG | - | chr1_3:49742262-49742281 | Msa0122890:five_prime_UTR | 25.0% |
| ! | TGTAAGGATTGATATCAAAA+CGG | + | chr1_3:49742325-49742344 | None:intergenic | 25.0% |
| AGCAAGCAAAAAGAGAAAAA+GGG | - | chr1_3:49738460-49738479 | Msa0122890:three_prime_UTR | 30.0% | |
| ! | CACACTCAATAATCTTTTTC+AGG | - | chr1_3:49738649-49738668 | Msa0122890:exon | 30.0% |
| TCCAAGTAGCAAATTAACAT+GGG | + | chr1_3:49738801-49738820 | None:intergenic | 30.0% | |
| TTCCAAGTAGCAAATTAACA+TGG | + | chr1_3:49738802-49738821 | None:intergenic | 30.0% | |
| !! | TGCTACTTGGAAATTTTAGA+AGG | - | chr1_3:49738810-49738829 | Msa0122890:intron | 30.0% |
| !! | GCTACTTGGAAATTTTAGAA+GGG | - | chr1_3:49738811-49738830 | Msa0122890:intron | 30.0% |
| ACACACCTTTATATTTGAAG+GGG | + | chr1_3:49738870-49738889 | None:intergenic | 30.0% | |
| GTACACACCTTTATATTTGA+AGG | + | chr1_3:49738872-49738891 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr1_3:49739000-49739019 | Msa0122890:intron | 30.0% |
| ! | CTTATTTGAGCTTTATCTAG+TGG | + | chr1_3:49739116-49739135 | None:intergenic | 30.0% |
| GAAATGTCCATGTATTGTTT+AGG | - | chr1_3:49739240-49739259 | Msa0122890:intron | 30.0% | |
| ! | TATATGAAAACATGTCGACT+AGG | - | chr1_3:49739289-49739308 | Msa0122890:intron | 30.0% |
| !!! | TAGTCCATACTGGTTTTAAA+TGG | - | chr1_3:49739382-49739401 | Msa0122890:intron | 30.0% |
| TTCTTCAATTCCTCATTCTT+GGG | + | chr1_3:49739711-49739730 | None:intergenic | 30.0% | |
| ! | CTTTGAACTGTTTTCTTTAG+TGG | - | chr1_3:49739822-49739841 | Msa0122890:intron | 30.0% |
| ! | AAACCAGTGTTGTTAAATAG+AGG | + | chr1_3:49739995-49740014 | None:intergenic | 30.0% |
| ! | TTCTCATGTAACTTGTAATG+TGG | - | chr1_3:49740014-49740033 | Msa0122890:CDS | 30.0% |
| GTTTCTGCAATAGAAAATAG+AGG | - | chr1_3:49740089-49740108 | Msa0122890:intron | 30.0% | |
| !!! | ATGTTACTTTTGTCTAACAC+AGG | + | chr1_3:49740164-49740183 | None:intergenic | 30.0% |
| ACAAAAGTAACATCCTTCAT+TGG | - | chr1_3:49740171-49740190 | Msa0122890:intron | 30.0% | |
| ! | GAAAATACGTTTGATAGCTA+AGG | + | chr1_3:49740360-49740379 | None:intergenic | 30.0% |
| ! | TAATTGTTTTCAACATCCCA+TGG | + | chr1_3:49740399-49740418 | None:intergenic | 30.0% |
| CTACAAGTACACAATTTCAA+TGG | + | chr1_3:49740468-49740487 | None:intergenic | 30.0% | |
| ! | TTGTAGTTACTAGTTTGACA+TGG | - | chr1_3:49740482-49740501 | Msa0122890:CDS | 30.0% |
| ! | TTTGGCAAAATCGTTCATTT+TGG | - | chr1_3:49740513-49740532 | Msa0122890:CDS | 30.0% |
| ! | GCATATTTTGTGTCAAATGT+TGG | - | chr1_3:49740535-49740554 | Msa0122890:CDS | 30.0% |
| CTGATAAAACAAGGAATAAG+GGG | + | chr1_3:49740595-49740614 | None:intergenic | 30.0% | |
| CCTGATAAAACAAGGAATAA+GGG | + | chr1_3:49740596-49740615 | None:intergenic | 30.0% | |
| ACTCCTTCAATATCTATTAG+AGG | - | chr1_3:49740647-49740666 | Msa0122890:intron | 30.0% | |
| CTCCTTCAATATCTATTAGA+GGG | - | chr1_3:49740648-49740667 | Msa0122890:intron | 30.0% | |
| TTCCCTCTAATAGATATTGA+AGG | + | chr1_3:49740653-49740672 | None:intergenic | 30.0% | |
| TGTTAAAGTAATAACTTGGG+CGG | - | chr1_3:49740846-49740865 | Msa0122890:intron | 30.0% | |
| !!! | ATAGCGAGCCATTTTTATTA+TGG | - | chr1_3:49740912-49740931 | Msa0122890:CDS | 30.0% |
| GGATGATAAAAGTAGTTCAT+AGG | - | chr1_3:49740939-49740958 | Msa0122890:CDS | 30.0% | |
| AGTTAGTGAAATCTATGACT+AGG | - | chr1_3:49741126-49741145 | Msa0122890:intron | 30.0% | |
| GTTAGTGAAATCTATGACTA+GGG | - | chr1_3:49741127-49741146 | Msa0122890:intron | 30.0% | |
| AGTCTTAGAGTTATGACTAT+GGG | + | chr1_3:49741161-49741180 | None:intergenic | 30.0% | |
| TTAAACTTATGATGTGCCAA+GGG | + | chr1_3:49741630-49741649 | None:intergenic | 30.0% | |
| TAACAGAATGTATGTTCATC+AGG | - | chr1_3:49741744-49741763 | Msa0122890:intron | 30.0% | |
| ATTTACTTTGATCCATTTCG+GGG | + | chr1_3:49741772-49741791 | None:intergenic | 30.0% | |
| CATTTACTTTGATCCATTTC+GGG | + | chr1_3:49741773-49741792 | None:intergenic | 30.0% | |
| ATCTCAGGAATGATGAAATT+AGG | + | chr1_3:49741828-49741847 | None:intergenic | 30.0% | |
| ! | AACAAAAGTATGTCTTCTAG+TGG | + | chr1_3:49741869-49741888 | None:intergenic | 30.0% |
| GAAACTCTAAACAGAATCAA+TGG | + | chr1_3:49741896-49741915 | None:intergenic | 30.0% | |
| CAAATTCAAAGATGGAAAGT+GGG | - | chr1_3:49741980-49741999 | Msa0122890:CDS | 30.0% | |
| GTAACTAGATTCAAGATTTC+TGG | - | chr1_3:49742052-49742071 | Msa0122890:intron | 30.0% | |
| ! | TCAGATTTTTACAAGGTTAC+AGG | - | chr1_3:49742212-49742231 | Msa0122890:exon | 30.0% |
| GTAAGGATTGATATCAAAAC+GGG | + | chr1_3:49742324-49742343 | None:intergenic | 30.0% | |
| ATAACTGTGTACGATGAAGT+GGG | + | chr1_3:49738366-49738385 | None:intergenic | 35.0% | |
| AATAACTGTGTACGATGAAG+TGG | + | chr1_3:49738367-49738386 | None:intergenic | 35.0% | |
| GAGCAAGCAAAAAGAGAAAA+AGG | - | chr1_3:49738459-49738478 | Msa0122890:three_prime_UTR | 35.0% | |
| ! | AGATTCTTTGATAGCAGCAA+TGG | + | chr1_3:49738559-49738578 | None:intergenic | 35.0% |
| !! | ATCTTCAGCTTTAGAACTCA+AGG | - | chr1_3:49738575-49738594 | Msa0122890:three_prime_UTR | 35.0% |
| GGTAACCAATATGTGAAGAT+GGG | - | chr1_3:49738677-49738696 | Msa0122890:CDS | 35.0% | |
| TCTTACCCATCTTCACATAT+TGG | + | chr1_3:49738685-49738704 | None:intergenic | 35.0% | |
| GTTGTCCCCTTCAAATATAA+AGG | - | chr1_3:49738862-49738881 | Msa0122890:CDS | 35.0% | |
| TACTTTATTATGGCCCTGTT+TGG | - | chr1_3:49738889-49738908 | Msa0122890:CDS | 35.0% | |
| TGCTTATAAGTTCTCCCAAT+TGG | - | chr1_3:49739074-49739093 | Msa0122890:intron | 35.0% | |
| AATCTTACCTTCCATTAGTG+GGG | + | chr1_3:49739410-49739429 | None:intergenic | 35.0% | |
| CAATCTTACCTTCCATTAGT+GGG | + | chr1_3:49739411-49739430 | None:intergenic | 35.0% | |
| ACAAGAAGCAAACAAACACA+TGG | + | chr1_3:49739549-49739568 | None:intergenic | 35.0% | |
| GTTTGCTTCTTGTAATTCCT+TGG | - | chr1_3:49739556-49739575 | Msa0122890:intron | 35.0% | |
| ACTATTGAAACATCAGACCA+AGG | + | chr1_3:49739576-49739595 | None:intergenic | 35.0% | |
| ATTCAACGAAAAGGAAGCTT+TGG | + | chr1_3:49739640-49739659 | None:intergenic | 35.0% | |
| ! | TTCCTTTTCGTTGAATTCGT+TGG | - | chr1_3:49739644-49739663 | Msa0122890:intron | 35.0% |
| ATCCAACGAATTCAACGAAA+AGG | + | chr1_3:49739649-49739668 | None:intergenic | 35.0% | |
| AGCACAAGACTATTGTCAAA+TGG | - | chr1_3:49739671-49739690 | Msa0122890:intron | 35.0% | |
| GCACAAGACTATTGTCAAAT+GGG | - | chr1_3:49739672-49739691 | Msa0122890:intron | 35.0% | |
| TTGTCAAATGGGTCTTCATT+TGG | - | chr1_3:49739683-49739702 | Msa0122890:intron | 35.0% | |
| CTTCTTCAATTCCTCATTCT+TGG | + | chr1_3:49739712-49739731 | None:intergenic | 35.0% | |
| GCAGATTGAAACTAAGATAC+TGG | - | chr1_3:49739740-49739759 | Msa0122890:intron | 35.0% | |
| ACTGGAGAATGAAAAACATG+AGG | - | chr1_3:49739758-49739777 | Msa0122890:intron | 35.0% | |
| GAAAATAGAGGCTTGAAGAT+TGG | - | chr1_3:49740101-49740120 | Msa0122890:intron | 35.0% | |
| CTATGTATCGAGAACTTACT+GGG | - | chr1_3:49740129-49740148 | Msa0122890:intron | 35.0% | |
| TCTGCATACAAAAGAAGAAC+AGG | + | chr1_3:49740197-49740216 | None:intergenic | 35.0% | |
| !!! | CCCTTATTCCTTGTTTTATC+AGG | - | chr1_3:49740593-49740612 | Msa0122890:CDS | 35.0% |
| GCCTGATAAAACAAGGAATA+AGG | + | chr1_3:49740597-49740616 | None:intergenic | 35.0% | |
| !!! | TATTCCTTGTTTTATCAGGC+TGG | - | chr1_3:49740597-49740616 | Msa0122890:CDS | 35.0% |
| ! | AGTTTTTGCTTAGATAGACG+AGG | + | chr1_3:49740630-49740649 | None:intergenic | 35.0% |
| ACAATGAGGAAAACACCTAT+TGG | - | chr1_3:49740880-49740899 | Msa0122890:intron | 35.0% | |
| CGCTATAAATCATCACCAAT+AGG | + | chr1_3:49740898-49740917 | None:intergenic | 35.0% | |
| CAGTCTTAGAGTTATGACTA+TGG | + | chr1_3:49741162-49741181 | None:intergenic | 35.0% | |
| !! | GTTGAGAGCAGTTTTGATAA+TGG | - | chr1_3:49741191-49741210 | Msa0122890:intron | 35.0% |
| GTGTTTGTATGGAAGATCAT+TGG | + | chr1_3:49741224-49741243 | None:intergenic | 35.0% | |
| !! | CAAGAGTCATATTTTGGGAA+AGG | + | chr1_3:49741349-49741368 | None:intergenic | 35.0% |
| CTTTCCCAAAATATGACTCT+TGG | - | chr1_3:49741347-49741366 | Msa0122890:intron | 35.0% | |
| ! | ACCTCCAAGAGTCATATTTT+GGG | + | chr1_3:49741354-49741373 | None:intergenic | 35.0% |
| TAAGTTCTTGTACCAAACAG+TGG | + | chr1_3:49741413-49741432 | None:intergenic | 35.0% | |
| !!! | GGGGATGGTTTTAAAATGTT+AGG | + | chr1_3:49741535-49741554 | None:intergenic | 35.0% |
| AAGGAGAAATCTAGTGAAAG+AGG | + | chr1_3:49741580-49741599 | None:intergenic | 35.0% | |
| GTTAAACTTATGATGTGCCA+AGG | + | chr1_3:49741631-49741650 | None:intergenic | 35.0% | |
| GCAAATTCAAAGATGGAAAG+TGG | - | chr1_3:49741979-49741998 | Msa0122890:CDS | 35.0% | |
| TATCAAAACGGGAACTAGAA+TGG | + | chr1_3:49742313-49742332 | None:intergenic | 35.0% | |
| TTCCAACGAAACTGCGTTTA+AGG | - | chr1_3:49738389-49738408 | Msa0122890:three_prime_UTR | 40.0% | |
| AACCTTAAACGCAGTTTCGT+TGG | + | chr1_3:49738394-49738413 | None:intergenic | 40.0% | |
| ! | GCTTTCTCGTTTTCGGTTAA+AGG | + | chr1_3:49738525-49738544 | None:intergenic | 40.0% |
| ! | AAGGTCTGCTTTCTCGTTTT+CGG | + | chr1_3:49738532-49738551 | None:intergenic | 40.0% |
| GGGTAACCAATATGTGAAGA+TGG | - | chr1_3:49738676-49738695 | Msa0122890:CDS | 40.0% | |
| ! | ATGCCATTGATTGCTACACA+AGG | - | chr1_3:49738717-49738736 | Msa0122890:CDS | 40.0% |
| ! | TGCCATTGATTGCTACACAA+GGG | - | chr1_3:49738718-49738737 | Msa0122890:CDS | 40.0% |
| !! | GCCCATGTTAATTTGCTACT+TGG | - | chr1_3:49738797-49738816 | Msa0122890:intron | 40.0% |
| ! | TAGTACACGTAGAGCTTGTT+TGG | + | chr1_3:49739144-49739163 | None:intergenic | 40.0% |
| TACTCACAAGTGTTTGACAG+TGG | + | chr1_3:49739201-49739220 | None:intergenic | 40.0% | |
| ! | GGGACCATTTAAAACCAGTA+TGG | + | chr1_3:49739389-49739408 | None:intergenic | 40.0% |
| TTTAAATGGTCCCCCACTAA+TGG | - | chr1_3:49739396-49739415 | Msa0122890:intron | 40.0% | |
| ATCTTACCTTCCATTAGTGG+GGG | + | chr1_3:49739409-49739428 | None:intergenic | 40.0% | |
| CCAATCTTACCTTCCATTAG+TGG | + | chr1_3:49739412-49739431 | None:intergenic | 40.0% | |
| CCACTAATGGAAGGTAAGAT+TGG | - | chr1_3:49739409-49739428 | Msa0122890:intron | 40.0% | |
| ! | ATTGGTCTCCTCGGATTATT+CGG | - | chr1_3:49739427-49739446 | Msa0122890:intron | 40.0% |
| TCATTTGGATCCCAAGAATG+AGG | - | chr1_3:49739698-49739717 | Msa0122890:intron | 40.0% | |
| AGTTTCTAACGCTATTGCAG+AGG | - | chr1_3:49739785-49739804 | Msa0122890:intron | 40.0% | |
| TTGTCAAATAGGGGCTATAG+AGG | + | chr1_3:49739892-49739911 | None:intergenic | 40.0% | |
| TCTATATCGCTGAGCAATAG+CGG | - | chr1_3:49739933-49739952 | Msa0122890:intron | 40.0% | |
| GTGCCTCTATTTAACAACAC+TGG | - | chr1_3:49739989-49740008 | Msa0122890:CDS | 40.0% | |
| ! | GTAACTTGTAATGTGGAGAC+TGG | - | chr1_3:49740021-49740040 | Msa0122890:CDS | 40.0% |
| CCAGTAAGTTCTCGATACAT+AGG | + | chr1_3:49740131-49740150 | None:intergenic | 40.0% | |
| CCTATGTATCGAGAACTTAC+TGG | - | chr1_3:49740128-49740147 | Msa0122890:intron | 40.0% | |
| ATCGAGAACTTACTGGGTTA+AGG | - | chr1_3:49740135-49740154 | Msa0122890:intron | 40.0% | |
| AAAGAAGAACAGGCCAATGA+AGG | + | chr1_3:49740187-49740206 | None:intergenic | 40.0% | |
| TATGTCCAGTGACTTCATTG+AGG | - | chr1_3:49740220-49740239 | Msa0122890:intron | 40.0% | |
| GAAATCCTCAATGAAGTCAC+TGG | + | chr1_3:49740228-49740247 | None:intergenic | 40.0% | |
| AAGGTGAACCGAAAACATGT+CGG | + | chr1_3:49740258-49740277 | None:intergenic | 40.0% | |
| ! | TGATAGCTAAGGGTGTAACA+CGG | + | chr1_3:49740349-49740368 | None:intergenic | 40.0% |
| ! | TTTTCAACATCCCATGGAAG+CGG | + | chr1_3:49740393-49740412 | None:intergenic | 40.0% |
| AAAACAAGGAATAAGGGGTG+AGG | + | chr1_3:49740590-49740609 | None:intergenic | 40.0% | |
| AGAACCAGCCTGATAAAACA+AGG | + | chr1_3:49740604-49740623 | None:intergenic | 40.0% | |
| !! | TTGTTTTATCAGGCTGGTTC+TGG | - | chr1_3:49740603-49740622 | Msa0122890:CDS | 40.0% |
| CCAGAAATCAATTGCAACGA+AGG | + | chr1_3:49740778-49740797 | None:intergenic | 40.0% | |
| ! | CCTTCGTTGCAATTGATTTC+TGG | - | chr1_3:49740775-49740794 | Msa0122890:intron | 40.0% |
| AAGTAATAACTTGGGCGGTA+AGG | - | chr1_3:49740851-49740870 | Msa0122890:intron | 40.0% | |
| CGGTAAGGATATAGACAATG+AGG | - | chr1_3:49740866-49740885 | Msa0122890:intron | 40.0% | |
| TCAAAACTGCTCTCAACCTA+GGG | + | chr1_3:49741188-49741207 | None:intergenic | 40.0% | |
| ATCAAAACTGCTCTCAACCT+AGG | + | chr1_3:49741189-49741208 | None:intergenic | 40.0% | |
| !!! | GAGAGCAGTTTTGATAATGG+CGG | - | chr1_3:49741194-49741213 | Msa0122890:intron | 40.0% |
| ATCCCTTCACAGATTGTCTA+TGG | - | chr1_3:49741277-49741296 | Msa0122890:intron | 40.0% | |
| CACCATAGACAATCTGTGAA+GGG | + | chr1_3:49741282-49741301 | None:intergenic | 40.0% | |
| TCCCAAAATATGACTCTTGG+AGG | - | chr1_3:49741350-49741369 | Msa0122890:intron | 40.0% | |
| ! | GACCTCCAAGAGTCATATTT+TGG | + | chr1_3:49741355-49741374 | None:intergenic | 40.0% |
| TTCTTGTACCAAACAGTGGT+TGG | + | chr1_3:49741409-49741428 | None:intergenic | 40.0% | |
| TTTGCCTAGCTTAGCATGAT+GGG | + | chr1_3:49741555-49741574 | None:intergenic | 40.0% | |
| ATTTGCCTAGCTTAGCATGA+TGG | + | chr1_3:49741556-49741575 | None:intergenic | 40.0% | |
| TAGGCTCTTTCAGAACATCA+TGG | + | chr1_3:49741809-49741828 | None:intergenic | 40.0% | |
| AGTGGAAAACCATTTCACCT+GGG | + | chr1_3:49741851-49741870 | None:intergenic | 40.0% | |
| TAGTGGAAAACCATTTCACC+TGG | + | chr1_3:49741852-49741871 | None:intergenic | 40.0% | |
| GTTGCTTCCTTTCATACACT+TGG | + | chr1_3:49742011-49742030 | None:intergenic | 40.0% | |
| AGAATAGATACATCCATGCG+AGG | + | chr1_3:49742119-49742138 | None:intergenic | 40.0% | |
| AGAAAAAGGGCAACCAACGA+TGG | - | chr1_3:49738473-49738492 | Msa0122890:three_prime_UTR | 45.0% | |
| ATGGCGCTATGGATGGAAAA+GGG | - | chr1_3:49738492-49738511 | Msa0122890:three_prime_UTR | 45.0% | |
| TGATAGCAGCAATGGCTTCA+AGG | + | chr1_3:49738551-49738570 | None:intergenic | 45.0% | |
| TGCCCTTGTGTAGCAATCAA+TGG | + | chr1_3:49738723-49738742 | None:intergenic | 45.0% | |
| ! | CACGTAGAGCTTGTTTGGAT+TGG | + | chr1_3:49739139-49739158 | None:intergenic | 45.0% |
| ! | CTTTATAGAAGCGCAGTCCA+AGG | + | chr1_3:49739322-49739341 | None:intergenic | 45.0% |
| CTTGGACTGCGCTTCTATAA+AGG | - | chr1_3:49739320-49739339 | Msa0122890:intron | 45.0% | |
| TGCGCTTCTATAAAGGTCTC+AGG | - | chr1_3:49739327-49739346 | Msa0122890:intron | 45.0% | |
| TAGCCCACAGAAATTGGTAC+CGG | + | chr1_3:49739364-49739383 | None:intergenic | 45.0% | |
| !! | ATGGACTAGCCCACAGAAAT+TGG | + | chr1_3:49739370-49739389 | None:intergenic | 45.0% |
| !! | GAAGGTAAGATTGGTCTCCT+CGG | - | chr1_3:49739418-49739437 | Msa0122890:intron | 45.0% |
| TCCTCGGATTATTCGGTCTT+TGG | - | chr1_3:49739434-49739453 | Msa0122890:intron | 45.0% | |
| CCTCGGATTATTCGGTCTTT+GGG | - | chr1_3:49739435-49739454 | Msa0122890:intron | 45.0% | |
| TAACGCTATTGCAGAGGCAA+AGG | - | chr1_3:49739791-49739810 | Msa0122890:intron | 45.0% | |
| GCTACTAGTGGGGAAGTTAT+TGG | - | chr1_3:49740681-49740700 | Msa0122890:intron | 45.0% | |
| TGAAGAGAAAGACGCAGTTG+AGG | - | chr1_3:49740707-49740726 | Msa0122890:intron | 45.0% | |
| !! | AACTCTAAGACTGATCCCCT+AGG | - | chr1_3:49741169-49741188 | Msa0122890:intron | 45.0% |
| CAAAACTGCTCTCAACCTAG+GGG | + | chr1_3:49741187-49741206 | None:intergenic | 45.0% | |
| !!! | GCAGTTTTGATAATGGCGGA+AGG | - | chr1_3:49741198-49741217 | Msa0122890:intron | 45.0% |
| TCCATACAAACACGCCATTG+CGG | - | chr1_3:49741231-49741250 | Msa0122890:intron | 45.0% | |
| CCACCATAGACAATCTGTGA+AGG | + | chr1_3:49741283-49741302 | None:intergenic | 45.0% | |
| CCTTCACAGATTGTCTATGG+TGG | - | chr1_3:49741280-49741299 | Msa0122890:intron | 45.0% | |
| CAAAAGATCTGTCACTGCGA+AGG | - | chr1_3:49741307-49741326 | Msa0122890:intron | 45.0% | |
| TTGCCTAGCTTAGCATGATG+GGG | + | chr1_3:49741554-49741573 | None:intergenic | 45.0% | |
| TTCATCATTCCTGAGATCCC+AGG | - | chr1_3:49741831-49741850 | Msa0122890:intron | 45.0% | |
| GCTTCCTTTCATACACTTGG+AGG | + | chr1_3:49742008-49742027 | None:intergenic | 45.0% | |
| !! | TAATTTATCTTAAATTTAAA+AGG | + | chr1_3:49741061-49741080 | None:intergenic | 5.0% |
| GATGGCGCTATGGATGGAAA+AGG | - | chr1_3:49738491-49738510 | Msa0122890:three_prime_UTR | 50.0% | |
| GTCTCAGGTTTGAATCCTCC+CGG | - | chr1_3:49739342-49739361 | Msa0122890:intron | 50.0% | |
| CTCCCGGTACCAATTTCTGT+GGG | - | chr1_3:49739358-49739377 | Msa0122890:intron | 50.0% | |
| AGCCCACAGAAATTGGTACC+GGG | + | chr1_3:49739363-49739382 | None:intergenic | 50.0% | |
| !! | TTCTGTGGGCTAGTCCATAC+TGG | - | chr1_3:49739372-49739391 | Msa0122890:intron | 50.0% |
| AATGGTCCCCCACTAATGGA+AGG | - | chr1_3:49739400-49739419 | Msa0122890:intron | 50.0% | |
| CCCAAAGACCGAATAATCCG+AGG | + | chr1_3:49739438-49739457 | None:intergenic | 50.0% | |
| ! | CTGCGAGACCGACATGTTTT+CGG | - | chr1_3:49740247-49740266 | Msa0122890:intron | 50.0% |
| AGAAGATCAGCCGCTTCCAT+GGG | - | chr1_3:49740380-49740399 | Msa0122890:intron | 50.0% | |
| GAGGTGGGAAATTGCTTTGG+AGG | + | chr1_3:49740571-49740590 | None:intergenic | 50.0% | |
| GGTGAGGTGGGAAATTGCTT+TGG | + | chr1_3:49740574-49740593 | None:intergenic | 50.0% | |
| CAAGGAATAAGGGGTGAGGT+GGG | + | chr1_3:49740586-49740605 | None:intergenic | 50.0% | |
| ACAAGGAATAAGGGGTGAGG+TGG | + | chr1_3:49740587-49740606 | None:intergenic | 50.0% | |
| GAACTGCAGCAGCTACTAGT+GGG | - | chr1_3:49740670-49740689 | Msa0122890:intron | 50.0% | |
| AACTGCAGCAGCTACTAGTG+GGG | - | chr1_3:49740671-49740690 | Msa0122890:intron | 50.0% | |
| AAGATCTGTCACTGCGAAGG+TGG | - | chr1_3:49741310-49741329 | Msa0122890:intron | 50.0% | |
| ACTCTTGGAGGTCATGTGAC+CGG | - | chr1_3:49741362-49741381 | Msa0122890:intron | 50.0% | |
| ACAGTGGAATAGTGGTTGGC+CGG | + | chr1_3:49741384-49741403 | None:intergenic | 50.0% | |
| GGTCACAGTGGAATAGTGGT+TGG | + | chr1_3:49741388-49741407 | None:intergenic | 50.0% | |
| ! | GGTTGGTCACAGTGGAATAG+TGG | + | chr1_3:49741392-49741411 | None:intergenic | 50.0% |
| ! | CAAACAGTGGTTGGTCACAG+TGG | + | chr1_3:49741400-49741419 | None:intergenic | 50.0% |
| CACTGTGACCAACCACTGTT+TGG | - | chr1_3:49741398-49741417 | Msa0122890:intron | 50.0% | |
| ! | CTAGCTTAGCATGATGGGGA+TGG | + | chr1_3:49741550-49741569 | None:intergenic | 50.0% |
| CATCCCCATCATGCTAAGCT+AGG | - | chr1_3:49741548-49741567 | Msa0122890:intron | 50.0% | |
| TCCTGAGATCCCAGGTGAAA+TGG | - | chr1_3:49741839-49741858 | Msa0122890:CDS | 50.0% | |
| ACCATTTCACCTGGGATCTC+AGG | + | chr1_3:49741843-49741862 | None:intergenic | 50.0% | |
| GGCTCCTCCAAGTGTATGAA+AGG | - | chr1_3:49742001-49742020 | Msa0122890:CDS | 50.0% | |
| AGAATTGGAGGAACCTCGCA+TGG | - | chr1_3:49742103-49742122 | Msa0122890:intron | 50.0% | |
| ACTTGGGACACACACAGACA+AGG | - | chr1_3:49742278-49742297 | Msa0122890:five_prime_UTR | 50.0% | |
| CTTGGGACACACACAGACAA+GGG | - | chr1_3:49742279-49742298 | Msa0122890:five_prime_UTR | 50.0% | |
| ACCAACGATGGCGCTATGGA+TGG | - | chr1_3:49738485-49738504 | Msa0122890:three_prime_UTR | 55.0% | |
| TCCATCCATAGCGCCATCGT+TGG | + | chr1_3:49738489-49738508 | None:intergenic | 55.0% | |
| GTCGACTAGGCTTGAGACCT+TGG | - | chr1_3:49739302-49739321 | Msa0122890:intron | 55.0% | |
| ! | CCACAGAAATTGGTACCGGG+AGG | + | chr1_3:49739360-49739379 | None:intergenic | 55.0% |
| CCTCCCGGTACCAATTTCTG+TGG | - | chr1_3:49739357-49739376 | Msa0122890:intron | 55.0% | |
| CAGAAGATCAGCCGCTTCCA+TGG | - | chr1_3:49740379-49740398 | Msa0122890:intron | 55.0% | |
| GGAACTGCAGCAGCTACTAG+TGG | - | chr1_3:49740669-49740688 | Msa0122890:intron | 55.0% | |
| GCCGCAATGGCGTGTTTGTA+TGG | + | chr1_3:49741235-49741254 | None:intergenic | 55.0% | |
| AAACACGCCATTGCGGCCTA+TGG | - | chr1_3:49741238-49741257 | Msa0122890:intron | 55.0% | |
| GTTCATCAGGCTCCCCGAAA+TGG | - | chr1_3:49741757-49741776 | Msa0122890:intron | 55.0% | |
| GGCAACCAACGATGGCGCTA+TGG | - | chr1_3:49738481-49738500 | Msa0122890:three_prime_UTR | 60.0% | |
| ! | GAGGCGCTACTGAGGCATAG+TGG | + | chr1_3:49739873-49739892 | None:intergenic | 60.0% |
| !! | GGGCTATAGAGGCGCTACTG+AGG | + | chr1_3:49739881-49739900 | None:intergenic | 60.0% |
| TGAAGGGATGCCCGCCATGG+CGG | + | chr1_3:49741266-49741285 | None:intergenic | 65.0% | |
| CTGTGAAGGGATGCCCGCCA+CGG | + | chr1_3:49741269-49741288 | None:intergenic | 65.0% | |
| GGCGGCACCATAGGCCGCAA+TGG | + | chr1_3:49741248-49741267 | None:intergenic | 70.0% | |
| !! | TGCGGCCTATGGTGCCGCCA+TGG | - | chr1_3:49741249-49741268 | Msa0122890:intron | 70.0% |
| !! | GGCCTATGGTGCCGCCATGG+CGG | - | chr1_3:49741252-49741271 | Msa0122890:intron | 70.0% |
| !! | GCCTATGGTGCCGCCATGGC+GGG | - | chr1_3:49741253-49741272 | Msa0122890:intron | 70.0% |
| GCCCGCCATGGCGGCACCAT+AGG | + | chr1_3:49741257-49741276 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49738363 | 49742356 | 49738363 | ID=Msa0122890;Name=Msa0122890 |
| chr1_3 | mRNA | 49738363 | 49742356 | 49738363 | ID=Msa0122890-mRNA-1;Parent=Msa0122890;Name=Msa0122890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=129|0.66|0.71|1|1|1|7|297|346 |
| chr1_3 | exon | 49738363 | 49738776 | 49738363 | ID=Msa0122890-mRNA-1:exon:15122;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49738859 | 49738953 | 49738859 | ID=Msa0122890-mRNA-1:exon:15121;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49739972 | 49740104 | 49739972 | ID=Msa0122890-mRNA-1:exon:15120;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49740451 | 49740636 | 49740451 | ID=Msa0122890-mRNA-1:exon:15119;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49740907 | 49741098 | 49740907 | ID=Msa0122890-mRNA-1:exon:15118;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49741836 | 49742048 | 49741836 | ID=Msa0122890-mRNA-1:exon:15117;Parent=Msa0122890-mRNA-1 |
| chr1_3 | exon | 49742123 | 49742356 | 49742123 | ID=Msa0122890-mRNA-1:exon:15116;Parent=Msa0122890-mRNA-1 |
| chr1_3 | five_prime_UTR | 49742228 | 49742356 | 49742228 | ID=Msa0122890-mRNA-1:five_prime_utr;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49742123 | 49742227 | 49742123 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49741836 | 49742048 | 49741836 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49740907 | 49741098 | 49740907 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49740451 | 49740636 | 49740451 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49739972 | 49740104 | 49739972 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49738859 | 49738953 | 49738859 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | CDS | 49738660 | 49738776 | 49738660 | ID=Msa0122890-mRNA-1:cds;Parent=Msa0122890-mRNA-1 |
| chr1_3 | three_prime_UTR | 49738363 | 49738659 | 49738363 | ID=Msa0122890-mRNA-1:three_prime_utr;Parent=Msa0122890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
