Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375170 | XP_024635206.2 | 86.310 | 336 | 15 | 1 | 1 | 305 | 1 | 336 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375170 | sp|Q54M20|TTC4_DICDI | 27.891 | 294 | 193 | 4 | 28 | 305 | 87 | 377 | 3.90e-29 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375170 | I3T7T9 | 86.012 | 336 | 16 | 1 | 1 | 305 | 1 | 336 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015610 | Msa1375170 | 0.802560 | 5.294543e-49 | -8.615850e-47 |
| Msa0017510 | Msa1375170 | 0.834851 | 2.360238e-56 | -8.615850e-47 |
| Msa0031340 | Msa1375170 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0074700 | Msa1375170 | 0.828753 | 7.545295e-55 | -8.615850e-47 |
| Msa0101590 | Msa1375170 | 0.808609 | 2.846815e-50 | -8.615850e-47 |
| Msa0101700 | Msa1375170 | 0.800534 | 1.378047e-48 | -8.615850e-47 |
| Msa0114060 | Msa1375170 | 0.808045 | 3.755996e-50 | -8.615850e-47 |
| Msa0115360 | Msa1375170 | 0.803841 | 2.874873e-49 | -8.615850e-47 |
| Msa1375170 | Msa1411020 | 0.819294 | 1.252315e-52 | -8.615850e-47 |
| Msa1375170 | Msa1420490 | 0.819715 | 1.004060e-52 | -8.615850e-47 |
| Msa1375170 | Msa1423390 | 0.819327 | 1.230986e-52 | -8.615850e-47 |
| Msa1375170 | Msa1424290 | 0.817773 | 2.771288e-52 | -8.615850e-47 |
| Msa1375170 | Msa1434350 | 0.817526 | 3.150281e-52 | -8.615850e-47 |
| Msa1375170 | Msa1439320 | 0.819872 | 9.242393e-53 | -8.615850e-47 |
| Msa1375170 | Msa1440370 | 0.820498 | 6.643524e-53 | -8.615850e-47 |
| Msa1375170 | Msa1440810 | 0.819238 | 1.290097e-52 | -8.615850e-47 |
| Msa1375170 | Msa1452240 | 0.815879 | 7.372962e-52 | -8.615850e-47 |
| Msa1375170 | Msa1457910 | 0.801813 | 7.543101e-49 | -8.615850e-47 |
| Msa1375170 | Msa1459690 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0663240 | Msa1375170 | 0.803787 | 2.951150e-49 | -8.615850e-47 |
| Msa0688480 | Msa1375170 | 0.803158 | 3.983465e-49 | -8.615850e-47 |
| Msa0690750 | Msa1375170 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0722720 | Msa1375170 | 0.809758 | 1.615532e-50 | -8.615850e-47 |
| Msa0741840 | Msa1375170 | 0.810541 | 1.095293e-50 | -8.615850e-47 |
| Msa0765910 | Msa1375170 | 0.821661 | 3.586810e-53 | -8.615850e-47 |
| Msa0770720 | Msa1375170 | 0.806832 | 6.793293e-50 | -8.615850e-47 |
| Msa0122610 | Msa1375170 | 0.807551 | 4.782642e-50 | -8.615850e-47 |
| Msa0122890 | Msa1375170 | 0.839340 | 1.680620e-57 | -8.615850e-47 |
| Msa0140780 | Msa1375170 | 0.801109 | 1.051231e-48 | -8.615850e-47 |
| Msa0145440 | Msa1375170 | 0.818343 | 2.059908e-52 | -8.615850e-47 |
| Msa0157290 | Msa1375170 | 0.834601 | 2.727901e-56 | -8.615850e-47 |
| Msa0167610 | Msa1375170 | 0.826180 | 3.125227e-54 | -8.615850e-47 |
| Msa0200260 | Msa1375170 | 0.813097 | 3.040940e-51 | -8.615850e-47 |
| Msa0231650 | Msa1375170 | 0.803048 | 4.197362e-49 | -8.615850e-47 |
| Msa1228590 | Msa1375170 | 0.828843 | 7.175670e-55 | -8.615850e-47 |
| Msa1233910 | Msa1375170 | 0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa1252140 | Msa1375170 | 0.803896 | 2.800910e-49 | -8.615850e-47 |
| Msa1267430 | Msa1375170 | 0.823864 | 1.101103e-53 | -8.615850e-47 |
| Msa0380740 | Msa1375170 | 0.804017 | 2.643069e-49 | -8.615850e-47 |
| Msa0428590 | Msa1375170 | 0.811590 | 6.488556e-51 | -8.615850e-47 |
| Msa0440750 | Msa1375170 | 0.806677 | 7.323312e-50 | -8.615850e-47 |
| Msa0979730 | Msa1375170 | 0.811733 | 6.041092e-51 | -8.615850e-47 |
| Msa1012320 | Msa1375170 | 0.801420 | 9.079597e-49 | -8.615850e-47 |
| Msa1014540 | Msa1375170 | 0.807816 | 4.201924e-50 | -8.615850e-47 |
| Msa1081980 | Msa1375170 | 0.816464 | 5.455310e-52 | -8.615850e-47 |
| Msa1085200 | Msa1375170 | 0.800338 | 1.510193e-48 | -8.615850e-47 |
| Msa0243100 | Msa1375170 | 0.817028 | 4.077039e-52 | -8.615850e-47 |
| Msa0264150 | Msa1375170 | 0.810542 | 1.094684e-50 | -8.615850e-47 |
| Msa0287650 | Msa1375170 | 0.817562 | 3.092672e-52 | -8.615850e-47 |
| Msa0347770 | Msa1375170 | 0.811822 | 5.775987e-51 | -8.615850e-47 |
| Msa1167340 | Msa1375170 | 0.806877 | 6.643610e-50 | -8.615850e-47 |
| Msa0500360 | Msa1375170 | 0.801649 | 8.151187e-49 | -8.615850e-47 |
| Msa0507680 | Msa1375170 | 0.804622 | 1.977767e-49 | -8.615850e-47 |
| Msa0523270 | Msa1375170 | 0.802701 | 4.950837e-49 | -8.615850e-47 |
| Msa0542520 | Msa1375170 | 0.812560 | 3.987389e-51 | -8.615850e-47 |
| Msa0571440 | Msa1375170 | 0.812637 | 3.835459e-51 | -8.615850e-47 |
| Msa0597330 | Msa1375170 | 0.811842 | 5.718389e-51 | -8.615850e-47 |
| Msa0871270 | Msa1375170 | 0.806457 | 8.151580e-50 | -8.615850e-47 |
| Msa0880140 | Msa1375170 | 0.829733 | 4.362706e-55 | -8.615850e-47 |
| Msa0938220 | Msa1375170 | 0.816591 | 5.109680e-52 | -8.615850e-47 |
| Msa0963270 | Msa1375170 | 0.810306 | 1.230980e-50 | -8.615850e-47 |
| Msa0966400 | Msa1375170 | 0.829177 | 5.956157e-55 | -8.615850e-47 |
| Msa0975340 | Msa1375170 | 0.816212 | 6.211166e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375170 | MtrunA17_Chr1g0183161 | 95.279 | 233 | 11 | 0 | 1 | 233 | 1 | 233 | 7.31e-164 | 458 |
| Msa1375170 | MtrunA17_Chr1g0183151 | 86.420 | 81 | 6 | 1 | 225 | 305 | 36 | 111 | 2.42e-42 | 144 |
| Msa1375170 | MtrunA17_Chr8g0358301 | 91.935 | 62 | 5 | 0 | 171 | 232 | 3 | 64 | 2.07e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375170 | AT1G04130.1 | 58.754 | 337 | 106 | 2 | 1 | 305 | 1 | 336 | 3.37e-139 | 399 |
| Msa1375170 | AT1G04130.2 | 53.333 | 240 | 79 | 2 | 98 | 305 | 1 | 239 | 1.27e-82 | 252 |
| Msa1375170 | AT1G56440.2 | 34.337 | 166 | 93 | 7 | 35 | 198 | 78 | 229 | 4.30e-13 | 70.5 |
| Msa1375170 | AT1G56440.1 | 34.337 | 166 | 93 | 7 | 35 | 198 | 88 | 239 | 4.31e-13 | 70.5 |
Find 80 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACTAGATTCAAGATTTC+TGG | 0.161972 | tig0019645:+86223 | Msa1375170:exon |
| CATTTACTTTGATCCATTTC+GGG | 0.194904 | tig0019645:-85941 | None:intergenic |
| CTTCTTCAATTCCTCATTCT+TGG | 0.218109 | tig0019645:-83889 | None:intergenic |
| TCATTTACTTTGATCCATTT+CGG | 0.218966 | tig0019645:-85942 | None:intergenic |
| CTCAATTACAATGCTAGAAT+TGG | 0.258579 | tig0019645:+86259 | Msa1375170:three_prime_UTR |
| AAAGATAATTTGTGTTGTTT+TGG | 0.283236 | tig0019645:+86333 | Msa1375170:three_prime_UTR |
| TCTTACCCATCTTCACATAT+TGG | 0.336932 | tig0019645:-82864 | None:intergenic |
| TTGTCAAATGGGTCTTCATT+TGG | 0.352533 | tig0019645:+83863 | Msa1375170:CDS |
| GCAGATTGAAACTAAGATAC+TGG | 0.354334 | tig0019645:+83920 | Msa1375170:CDS |
| TTCTTCAATTCCTCATTCTT+GGG | 0.354589 | tig0019645:-83888 | None:intergenic |
| ACTCCTTCAATATCTATTAG+AGG | 0.356893 | tig0019645:+84827 | Msa1375170:CDS |
| GCCCATGTTAATTTGCTACT+TGG | 0.360457 | tig0019645:+82979 | Msa1375170:CDS |
| CCTATGTATCGAGAACTTAC+TGG | 0.383520 | tig0019645:+84308 | Msa1375170:CDS |
| GCTACTAGTGGGGAAGTTAT+TGG | 0.385514 | tig0019645:+84861 | Msa1375170:CDS |
| TTTGAATTTGCTATAAAAGC+TGG | 0.386477 | tig0019645:-86138 | None:intergenic |
| ATCTCAGGAATGATGAAATT+AGG | 0.386785 | tig0019645:-85996 | None:intergenic |
| TCCTGAGATCCCAGGTGAAA+TGG | 0.390954 | tig0019645:+86010 | Msa1375170:CDS |
| ACCATTTCACCTGGGATCTC+AGG | 0.398144 | tig0019645:-86011 | None:intergenic |
| GAAAATAGAGGCTTGAAGAT+TGG | 0.400992 | tig0019645:+84281 | Msa1375170:CDS |
| GTTCATCAGGCTCCCCGAAA+TGG | 0.404916 | tig0019645:+85928 | Msa1375170:intron |
| GCAAATTCAAAGATGGAAAG+TGG | 0.409006 | tig0019645:+86150 | Msa1375170:CDS |
| TGATAGCAGCAATGGCTTCA+AGG | 0.419657 | tig0019645:-82730 | None:intergenic |
| GTACACACCTTTATATTTGA+AGG | 0.424038 | tig0019645:-83051 | None:intergenic |
| ACAAAAGTAACATCCTTCAT+TGG | 0.426238 | tig0019645:+84351 | Msa1375170:CDS |
| ATCGAGAACTTACTGGGTTA+AGG | 0.432106 | tig0019645:+84315 | Msa1375170:CDS |
| ATTCAACGAAAAGGAAGCTT+TGG | 0.437825 | tig0019645:-83817 | None:intergenic |
| AGCACAAGACTATTGTCAAA+TGG | 0.442253 | tig0019645:+83851 | Msa1375170:CDS |
| GTTTCTGCAATAGAAAATAG+AGG | 0.447295 | tig0019645:+84269 | Msa1375170:CDS |
| GGGTAACCAATATGTGAAGA+TGG | 0.450218 | tig0019645:+82858 | Msa1375170:CDS |
| GCTTCCTTTCATACACTTGG+AGG | 0.454416 | tig0019645:-86176 | None:intergenic |
| GTTGTCCCCTTCAAATATAA+AGG | 0.456100 | tig0019645:+83044 | Msa1375170:CDS |
| GTTGCTTCCTTTCATACACT+TGG | 0.457940 | tig0019645:-86179 | None:intergenic |
| GTAAGGATTGATATCAAAAC+GGG | 0.459979 | tig0019645:-86492 | None:intergenic |
| TGTAAGGATTGATATCAAAA+CGG | 0.482878 | tig0019645:-86493 | None:intergenic |
| TCTGCATACAAAAGAAGAAC+AGG | 0.488330 | tig0019645:-84374 | None:intergenic |
| GCACAAGACTATTGTCAAAT+GGG | 0.491678 | tig0019645:+83852 | Msa1375170:CDS |
| TTCCCTCTAATAGATATTGA+AGG | 0.495729 | tig0019645:-84830 | None:intergenic |
| GATGGCGCTATGGATGGAAA+AGG | 0.498578 | tig0019645:+82673 | Msa1375170:exon |
| ATCCAACGAATTCAACGAAA+AGG | 0.499699 | tig0019645:-83826 | None:intergenic |
| AATTACAATGCTAGAATTGG+AGG | 0.500355 | tig0019645:+86262 | Msa1375170:three_prime_UTR |
| ATCTTCAGCTTTAGAACTCA+AGG | 0.507144 | tig0019645:+82757 | Msa1375170:CDS |
| TGCCCTTGTGTAGCAATCAA+TGG | 0.510437 | tig0019645:-82902 | None:intergenic |
| TACACACCTTTATATTTGAA+GGG | 0.513059 | tig0019645:-83050 | None:intergenic |
| AAAGAAGAACAGGCCAATGA+AGG | 0.520736 | tig0019645:-84364 | None:intergenic |
| TATCAAAACGGGAACTAGAA+TGG | 0.522411 | tig0019645:-86481 | None:intergenic |
| AGATTCTTTGATAGCAGCAA+TGG | 0.528920 | tig0019645:-82738 | None:intergenic |
| TCATTTGGATCCCAAGAATG+AGG | 0.529648 | tig0019645:+83878 | Msa1375170:CDS |
| CTATGTATCGAGAACTTACT+GGG | 0.529659 | tig0019645:+84309 | Msa1375170:CDS |
| GGCAACGATGGCGCTATGGA+TGG | 0.533170 | tig0019645:+82667 | Msa1375170:exon |
| TAGGCTCTTTCAGAACATCA+TGG | 0.536783 | tig0019645:-85977 | None:intergenic |
| GAAATCCTCAATGAAGTCAC+TGG | 0.541468 | tig0019645:-84405 | None:intergenic |
| TAGTGGAAAACCATTTCACC+TGG | 0.543377 | tig0019645:-86020 | None:intergenic |
| GGCTCCTCCAAGTGTATGAA+AGG | 0.544448 | tig0019645:+86172 | Msa1375170:CDS |
| TAACGCTATTGCAGAGGCAA+AGG | 0.546218 | tig0019645:+83971 | Msa1375170:CDS |
| CCAGTAAGTTCTCGATACAT+AGG | 0.546495 | tig0019645:-84308 | None:intergenic |
| TTCCAAGTAGCAAATTAACA+TGG | 0.546678 | tig0019645:-82981 | None:intergenic |
| TTCATCATTCCTGAGATCCC+AGG | 0.547369 | tig0019645:+86002 | Msa1375170:CDS |
| CTCCTTCAATATCTATTAGA+GGG | 0.550231 | tig0019645:+84828 | Msa1375170:CDS |
| AAAGGGCAACGATGGCGCTA+TGG | 0.556727 | tig0019645:+82663 | Msa1375170:exon |
| AGAATTGGAGGAACCTCGCA+TGG | 0.558123 | tig0019645:+86274 | Msa1375170:three_prime_UTR |
| GGTAACCAATATGTGAAGAT+GGG | 0.559754 | tig0019645:+82859 | Msa1375170:CDS |
| AATGGATCAAAGTAAATGAA+AGG | 0.566088 | tig0019645:+85946 | Msa1375170:CDS |
| CAAATTCAAAGATGGAAAGT+GGG | 0.573070 | tig0019645:+86151 | Msa1375170:CDS |
| GAACTGCAGCAGCTACTAGT+GGG | 0.574587 | tig0019645:+84850 | Msa1375170:CDS |
| ATGGCGCTATGGATGGAAAA+GGG | 0.580044 | tig0019645:+82674 | Msa1375170:CDS |
| ACTTGGGACACACACAGACA+AGG | 0.584351 | tig0019645:+86449 | Msa1375170:three_prime_UTR |
| ACACACCTTTATATTTGAAG+GGG | 0.595045 | tig0019645:-83049 | None:intergenic |
| GGAACTGCAGCAGCTACTAG+TGG | 0.596282 | tig0019645:+84849 | Msa1375170:CDS |
| TCCAAGTAGCAAATTAACAT+GGG | 0.601319 | tig0019645:-82980 | None:intergenic |
| ATTTACTTTGATCCATTTCG+GGG | 0.610669 | tig0019645:-85940 | None:intergenic |
| TATGTCCAGTGACTTCATTG+AGG | 0.613206 | tig0019645:+84400 | Msa1375170:CDS |
| TGAAGAGAAAGACGCAGTTG+AGG | 0.626108 | tig0019645:+84887 | Msa1375170:CDS |
| ATGCCATTGATTGCTACACA+AGG | 0.631471 | tig0019645:+82899 | Msa1375170:CDS |
| CTTGGGACACACACAGACAA+GGG | 0.643268 | tig0019645:+86450 | Msa1375170:three_prime_UTR |
| AGTTTCTAACGCTATTGCAG+AGG | 0.653391 | tig0019645:+83965 | Msa1375170:CDS |
| AGAATAGATACATCCATGCG+AGG | 0.679215 | tig0019645:-86287 | None:intergenic |
| TGCCATTGATTGCTACACAA+GGG | 0.679278 | tig0019645:+82900 | Msa1375170:CDS |
| AACTGCAGCAGCTACTAGTG+GGG | 0.680793 | tig0019645:+84851 | Msa1375170:CDS |
| AGTGGAAAACCATTTCACCT+GGG | 0.681775 | tig0019645:-86019 | None:intergenic |
| AAGGTGAACCGAAAACATGT+CGG | 0.696850 | tig0019645:-84435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTAATATTACATTT+TGG | + | tig0019645:85189-85208 | Msa1375170:intron | 10.0% |
| !! | AACAAAACATTTCATATAAA+AGG | - | tig0019645:84471-84490 | None:intergenic | 15.0% |
| !!! | ATTCAATGTTTTTAAATTCT+TGG | + | tig0019645:85160-85179 | Msa1375170:intron | 15.0% |
| !!! | TTCTTTTTTGCTTTATAAAA+AGG | - | tig0019645:85770-85789 | None:intergenic | 15.0% |
| !!! | AATAATCTTTTTCAGGAAAA+GGG | + | tig0019645:82838-82857 | Msa1375170:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCGAAA+CGG | + | tig0019645:83701-83720 | Msa1375170:intron | 20.0% |
| !! | TGATGTTTCAATAGTAATAA+TGG | + | tig0019645:83761-83780 | Msa1375170:intron | 20.0% |
| !! | CACAATTTATGTTTAAAGAA+GGG | - | tig0019645:84240-84259 | None:intergenic | 20.0% |
| !! | TATAAAAGGATATCATATCA+AGG | - | tig0019645:84457-84476 | None:intergenic | 20.0% |
| !!! | ATACTAGTTTTGTGTATATA+TGG | + | tig0019645:84503-84522 | Msa1375170:intron | 20.0% |
| !! | ATCCAAAACCATAATAAAAA+TGG | - | tig0019645:85103-85122 | None:intergenic | 20.0% |
| !! | AGATAAATTAAAGAGAAGAA+TGG | + | tig0019645:85242-85261 | Msa1375170:intron | 20.0% |
| !!! | TTTGAAAACCAATTTTTGAA+TGG | + | tig0019645:85608-85627 | Msa1375170:intron | 20.0% |
| !! | AAAGAAATCCATTCAAAAAT+TGG | - | tig0019645:85619-85638 | None:intergenic | 20.0% |
| !! | TTAAATACATTCTTTATCGT+TGG | - | tig0019645:85872-85891 | None:intergenic | 20.0% |
| !!! | TTTTATAGCAAATTCAAAGA+TGG | + | tig0019645:86143-86162 | Msa1375170:CDS | 20.0% |
| !!! | AAAGATAATTTGTGTTGTTT+TGG | + | tig0019645:86333-86352 | Msa1375170:three_prime_UTR | 20.0% |
| !!! | TTTGATTTCAGATTTTTACA+AGG | + | tig0019645:86376-86395 | Msa1375170:three_prime_UTR | 20.0% |
| !!! | CAATAATCTTTTTCAGGAAA+AGG | + | tig0019645:82837-82856 | Msa1375170:intron | 25.0% |
| ! | TACACACCTTTATATTTGAA+GGG | - | tig0019645:83053-83072 | None:intergenic | 25.0% |
| !! | TAAAGGTGTGTACTTTATTA+TGG | + | tig0019645:83061-83080 | Msa1375170:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | tig0019645:83087-83106 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | tig0019645:83088-83107 | None:intergenic | 25.0% |
| !!! | CTTACATAAGCTATTTCTAT+AGG | + | tig0019645:83121-83140 | Msa1375170:intron | 25.0% |
| !!! | TAAGTTTTGTAAGACCAATT+GGG | - | tig0019645:83273-83292 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAAGACCAAT+TGG | - | tig0019645:83274-83293 | None:intergenic | 25.0% |
| ! | ATGTTATCCTAAACAATACA+TGG | - | tig0019645:83432-83451 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAACTCAGTATG+CGG | - | tig0019645:83643-83662 | None:intergenic | 25.0% |
| ! | AATGGTAACTGTGATTTATT+AGG | + | tig0019645:83779-83798 | Msa1375170:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+GGG | - | tig0019645:84081-84100 | None:intergenic | 25.0% |
| ! | GTACAAAATGTTGTCAAATA+GGG | - | tig0019645:84082-84101 | None:intergenic | 25.0% |
| ! | AGTACAAAATGTTGTCAAAT+AGG | - | tig0019645:84083-84102 | None:intergenic | 25.0% |
| ! | GCACAATTTATGTTTAAAGA+AGG | - | tig0019645:84241-84260 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAATTGTGC+AGG | + | tig0019645:84241-84260 | Msa1375170:intron | 25.0% |
| !! | AAAATACGTTTGATAGCTAA+GGG | - | tig0019645:84539-84558 | None:intergenic | 25.0% |
| ! | ATTTATTGAGTTATACTACG+AGG | + | tig0019645:84608-84627 | Msa1375170:intron | 25.0% |
| !!! | TTTGACATGGTGATATTTTT+TGG | + | tig0019645:84675-84694 | Msa1375170:intron | 25.0% |
| ! | ACTTCATTTCCCTAATATAA+TGG | + | tig0019645:84994-85013 | Msa1375170:intron | 25.0% |
| ! | CAGTATGAACCATTATATTA+GGG | - | tig0019645:85006-85025 | None:intergenic | 25.0% |
| ! | ACAGTATGAACCATTATATT+AGG | - | tig0019645:85007-85026 | None:intergenic | 25.0% |
| ! | ACTGTGTTAAAGTAATAACT+TGG | + | tig0019645:85022-85041 | Msa1375170:intron | 25.0% |
| ! | CTGTGTTAAAGTAATAACTT+GGG | + | tig0019645:85023-85042 | Msa1375170:intron | 25.0% |
| !!! | AGCCATTTTTATTATGGTTT+TGG | + | tig0019645:85098-85117 | Msa1375170:intron | 25.0% |
| !!! | TATGGTTTTGGATGATAAAT+AGG | + | tig0019645:85110-85129 | Msa1375170:intron | 25.0% |
| ! | AGTCTTAGATTTATGACTAT+GGG | - | tig0019645:85332-85351 | None:intergenic | 25.0% |
| ! | AAAAAGAAAAAAAACTCCCT+TGG | + | tig0019645:85782-85801 | Msa1375170:intron | 25.0% |
| ! | TTGTTAAACATATGTGACAA+GGG | - | tig0019645:85833-85852 | None:intergenic | 25.0% |
| ! | TTTGTTAAACATATGTGACA+AGG | - | tig0019645:85834-85853 | None:intergenic | 25.0% |
| ! | CACATATGTTTAACAAAATG+AGG | + | tig0019645:85837-85856 | Msa1375170:intron | 25.0% |
| ! | TCATTTACTTTGATCCATTT+CGG | - | tig0019645:85945-85964 | None:intergenic | 25.0% |
| ! | AATGGATCAAAGTAAATGAA+AGG | + | tig0019645:85946-85965 | Msa1375170:CDS | 25.0% |
| !!! | TTTGAATTTGCTATAAAAGC+TGG | - | tig0019645:86141-86160 | None:intergenic | 25.0% |
| !!! | GTTTTGGTACATGTATAATT+TGG | + | tig0019645:86349-86368 | Msa1375170:three_prime_UTR | 25.0% |
| !!! | TTCAAATTTCGTTTTTCACT+TGG | + | tig0019645:86432-86451 | Msa1375170:three_prime_UTR | 25.0% |
| !!! | TCAAATTTCGTTTTTCACTT+GGG | + | tig0019645:86433-86452 | Msa1375170:three_prime_UTR | 25.0% |
| ! | TGTAAGGATTGATATCAAAA+CGG | - | tig0019645:86496-86515 | None:intergenic | 25.0% |
| AGCAAGCAAAAAGAGAAAAA+GGG | + | tig0019645:82646-82665 | Msa1375170:five_prime_UTR | 30.0% | |
| ! | CACACTCAATAATCTTTTTC+AGG | + | tig0019645:82831-82850 | Msa1375170:intron | 30.0% |
| TCCAAGTAGCAAATTAACAT+GGG | - | tig0019645:82983-83002 | None:intergenic | 30.0% | |
| TTCCAAGTAGCAAATTAACA+TGG | - | tig0019645:82984-83003 | None:intergenic | 30.0% | |
| !! | TGCTACTTGGAAATTTTAGA+AGG | + | tig0019645:82992-83011 | Msa1375170:CDS | 30.0% |
| !! | GCTACTTGGAAATTTTAGAA+GGG | + | tig0019645:82993-83012 | Msa1375170:CDS | 30.0% |
| ACACACCTTTATATTTGAAG+GGG | - | tig0019645:83052-83071 | None:intergenic | 30.0% | |
| GTACACACCTTTATATTTGA+AGG | - | tig0019645:83054-83073 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | tig0019645:83182-83201 | Msa1375170:intron | 30.0% |
| ! | CTTATTTGAGCTTTATCTAG+TGG | - | tig0019645:83298-83317 | None:intergenic | 30.0% |
| GAAATGTCCATGTATTGTTT+AGG | + | tig0019645:83422-83441 | Msa1375170:intron | 30.0% | |
| ! | TATATGAAAACATGTCGACT+AGG | + | tig0019645:83471-83490 | Msa1375170:intron | 30.0% |
| TTCTTCAATTCCTCATTCTT+GGG | - | tig0019645:83891-83910 | None:intergenic | 30.0% | |
| ! | CTTTGAACTGTTTTCTTTAG+TGG | + | tig0019645:84002-84021 | Msa1375170:intron | 30.0% |
| ! | AAACCAGTGTTGTTAAATAG+AGG | - | tig0019645:84175-84194 | None:intergenic | 30.0% |
| ! | TTCTCATGTAACTTGTAATG+TGG | + | tig0019645:84194-84213 | Msa1375170:intron | 30.0% |
| GTTTCTGCAATAGAAAATAG+AGG | + | tig0019645:84269-84288 | Msa1375170:CDS | 30.0% | |
| !!! | ATGTTACTTTTGTCTAACAC+AGG | - | tig0019645:84344-84363 | None:intergenic | 30.0% |
| ACAAAAGTAACATCCTTCAT+TGG | + | tig0019645:84351-84370 | Msa1375170:CDS | 30.0% | |
| ! | GAAAATACGTTTGATAGCTA+AGG | - | tig0019645:84540-84559 | None:intergenic | 30.0% |
| ! | TAATTGTTTTCAACATCCCA+TGG | - | tig0019645:84579-84598 | None:intergenic | 30.0% |
| CTACAAGTACACAATTTCAA+TGG | - | tig0019645:84648-84667 | None:intergenic | 30.0% | |
| ! | TTGTAGTTACTAGTTTGACA+TGG | + | tig0019645:84662-84681 | Msa1375170:intron | 30.0% |
| ! | TTTGGCAAAATCGTTCATTT+TGG | + | tig0019645:84693-84712 | Msa1375170:intron | 30.0% |
| ! | GCATATTTTGTGTCAAATGT+TGG | + | tig0019645:84715-84734 | Msa1375170:intron | 30.0% |
| CTGATAAAACAAGGAATAAG+GGG | - | tig0019645:84775-84794 | None:intergenic | 30.0% | |
| CCTGATAAAACAAGGAATAA+GGG | - | tig0019645:84776-84795 | None:intergenic | 30.0% | |
| ACTCCTTCAATATCTATTAG+AGG | + | tig0019645:84827-84846 | Msa1375170:CDS | 30.0% | |
| CTCCTTCAATATCTATTAGA+GGG | + | tig0019645:84828-84847 | Msa1375170:CDS | 30.0% | |
| TTCCCTCTAATAGATATTGA+AGG | - | tig0019645:84833-84852 | None:intergenic | 30.0% | |
| TGTTAAAGTAATAACTTGGG+CGG | + | tig0019645:85026-85045 | Msa1375170:intron | 30.0% | |
| !!! | ATAGCGAGCCATTTTTATTA+TGG | + | tig0019645:85092-85111 | Msa1375170:intron | 30.0% |
| AGTTAGTGAAATCTATGACT+AGG | + | tig0019645:85297-85316 | Msa1375170:intron | 30.0% | |
| GTTAGTGAAATCTATGACTA+GGG | + | tig0019645:85298-85317 | Msa1375170:intron | 30.0% | |
| CAGTCTTAGATTTATGACTA+TGG | - | tig0019645:85333-85352 | None:intergenic | 30.0% | |
| TTAAACTTATGATGTGCCAA+GGG | - | tig0019645:85801-85820 | None:intergenic | 30.0% | |
| TAACAGAATGTATGTTCATC+AGG | + | tig0019645:85915-85934 | Msa1375170:intron | 30.0% | |
| ATTTACTTTGATCCATTTCG+GGG | - | tig0019645:85943-85962 | None:intergenic | 30.0% | |
| CATTTACTTTGATCCATTTC+GGG | - | tig0019645:85944-85963 | None:intergenic | 30.0% | |
| ATCTCAGGAATGATGAAATT+AGG | - | tig0019645:85999-86018 | None:intergenic | 30.0% | |
| ! | AACAAAAGTATGTCTTCTAG+TGG | - | tig0019645:86040-86059 | None:intergenic | 30.0% |
| GAAACTCTAAACAGAATCAA+TGG | - | tig0019645:86067-86086 | None:intergenic | 30.0% | |
| CAAATTCAAAGATGGAAAGT+GGG | + | tig0019645:86151-86170 | Msa1375170:CDS | 30.0% | |
| GTAACTAGATTCAAGATTTC+TGG | + | tig0019645:86223-86242 | Msa1375170:exon | 30.0% | |
| CTCAATTACAATGCTAGAAT+TGG | + | tig0019645:86259-86278 | Msa1375170:three_prime_UTR | 30.0% | |
| AATTACAATGCTAGAATTGG+AGG | + | tig0019645:86262-86281 | Msa1375170:three_prime_UTR | 30.0% | |
| ! | TCAGATTTTTACAAGGTTAC+AGG | + | tig0019645:86383-86402 | Msa1375170:three_prime_UTR | 30.0% |
| GTAAGGATTGATATCAAAAC+GGG | - | tig0019645:86495-86514 | None:intergenic | 30.0% | |
| GAGCAAGCAAAAAGAGAAAA+AGG | + | tig0019645:82645-82664 | Msa1375170:five_prime_UTR | 35.0% | |
| ! | AGATTCTTTGATAGCAGCAA+TGG | - | tig0019645:82741-82760 | None:intergenic | 35.0% |
| !! | ATCTTCAGCTTTAGAACTCA+AGG | + | tig0019645:82757-82776 | Msa1375170:CDS | 35.0% |
| GGTAACCAATATGTGAAGAT+GGG | + | tig0019645:82859-82878 | Msa1375170:CDS | 35.0% | |
| TCTTACCCATCTTCACATAT+TGG | - | tig0019645:82867-82886 | None:intergenic | 35.0% | |
| GTTGTCCCCTTCAAATATAA+AGG | + | tig0019645:83044-83063 | Msa1375170:CDS | 35.0% | |
| TACTTTATTATGGCCCTGTT+TGG | + | tig0019645:83071-83090 | Msa1375170:intron | 35.0% | |
| TGCTTATAAGTTCTCCCAAT+TGG | + | tig0019645:83256-83275 | Msa1375170:intron | 35.0% | |
| !!! | TGGTCCATACTGGTTTTAAA+TGG | + | tig0019645:83564-83583 | Msa1375170:intron | 35.0% |
| AATCTTACCTTCCATTAGTG+GGG | - | tig0019645:83592-83611 | None:intergenic | 35.0% | |
| CAATCTTACCTTCCATTAGT+GGG | - | tig0019645:83593-83612 | None:intergenic | 35.0% | |
| ACAAGAAGCAAACAAACACA+TGG | - | tig0019645:83729-83748 | None:intergenic | 35.0% | |
| GTTTGCTTCTTGTAATTCCT+TGG | + | tig0019645:83736-83755 | Msa1375170:intron | 35.0% | |
| ACTATTGAAACATCAGACCA+AGG | - | tig0019645:83756-83775 | None:intergenic | 35.0% | |
| ATTCAACGAAAAGGAAGCTT+TGG | - | tig0019645:83820-83839 | None:intergenic | 35.0% | |
| ! | TTCCTTTTCGTTGAATTCGT+TGG | + | tig0019645:83824-83843 | Msa1375170:CDS | 35.0% |
| ATCCAACGAATTCAACGAAA+AGG | - | tig0019645:83829-83848 | None:intergenic | 35.0% | |
| AGCACAAGACTATTGTCAAA+TGG | + | tig0019645:83851-83870 | Msa1375170:CDS | 35.0% | |
| GCACAAGACTATTGTCAAAT+GGG | + | tig0019645:83852-83871 | Msa1375170:CDS | 35.0% | |
| TTGTCAAATGGGTCTTCATT+TGG | + | tig0019645:83863-83882 | Msa1375170:CDS | 35.0% | |
| CTTCTTCAATTCCTCATTCT+TGG | - | tig0019645:83892-83911 | None:intergenic | 35.0% | |
| GCAGATTGAAACTAAGATAC+TGG | + | tig0019645:83920-83939 | Msa1375170:CDS | 35.0% | |
| GAAAATAGAGGCTTGAAGAT+TGG | + | tig0019645:84281-84300 | Msa1375170:CDS | 35.0% | |
| CTATGTATCGAGAACTTACT+GGG | + | tig0019645:84309-84328 | Msa1375170:CDS | 35.0% | |
| TCTGCATACAAAAGAAGAAC+AGG | - | tig0019645:84377-84396 | None:intergenic | 35.0% | |
| !!! | CCCTTATTCCTTGTTTTATC+AGG | + | tig0019645:84773-84792 | Msa1375170:intron | 35.0% |
| GCCTGATAAAACAAGGAATA+AGG | - | tig0019645:84777-84796 | None:intergenic | 35.0% | |
| !!! | TATTCCTTGTTTTATCAGGC+TGG | + | tig0019645:84777-84796 | Msa1375170:intron | 35.0% |
| ! | AGTTTTTGCTTAGATAGACG+AGG | - | tig0019645:84810-84829 | None:intergenic | 35.0% |
| ACAATGAGGAAAACACCTAT+TGG | + | tig0019645:85060-85079 | Msa1375170:intron | 35.0% | |
| CGCTATAAATCATCACCAAT+AGG | - | tig0019645:85078-85097 | None:intergenic | 35.0% | |
| !! | GTTGAGAGCAGTTTTGATAA+TGG | + | tig0019645:85362-85381 | Msa1375170:intron | 35.0% |
| GTGTTTGTATGGAAGATCAT+TGG | - | tig0019645:85395-85414 | None:intergenic | 35.0% | |
| !! | CAAGAGTCATATTTTGGGAA+AGG | - | tig0019645:85520-85539 | None:intergenic | 35.0% |
| CTTTCCCAAAATATGACTCT+TGG | + | tig0019645:85518-85537 | Msa1375170:intron | 35.0% | |
| ! | ACCTCCAAGAGTCATATTTT+GGG | - | tig0019645:85525-85544 | None:intergenic | 35.0% |
| TAAGTTCTTGTACCAAACAG+TGG | - | tig0019645:85584-85603 | None:intergenic | 35.0% | |
| !!! | GGGGATGGTTTTAAAATGTT+AGG | - | tig0019645:85706-85725 | None:intergenic | 35.0% |
| AAGGAGAAATCTAGTGAAAG+AGG | - | tig0019645:85751-85770 | None:intergenic | 35.0% | |
| GTTAAACTTATGATGTGCCA+AGG | - | tig0019645:85802-85821 | None:intergenic | 35.0% | |
| GCAAATTCAAAGATGGAAAG+TGG | + | tig0019645:86150-86169 | Msa1375170:CDS | 35.0% | |
| TATCAAAACGGGAACTAGAA+TGG | - | tig0019645:86484-86503 | None:intergenic | 35.0% | |
| AAAGAGAAAAAGGGCAACGA+TGG | + | tig0019645:82655-82674 | Msa1375170:exon | 40.0% | |
| ! | GCTTTCTCGTTTTCGGTTAA+AGG | - | tig0019645:82707-82726 | None:intergenic | 40.0% |
| ! | AAGGTCTGCTTTCTCGTTTT+CGG | - | tig0019645:82714-82733 | None:intergenic | 40.0% |
| GGGTAACCAATATGTGAAGA+TGG | + | tig0019645:82858-82877 | Msa1375170:CDS | 40.0% | |
| ! | ATGCCATTGATTGCTACACA+AGG | + | tig0019645:82899-82918 | Msa1375170:CDS | 40.0% |
| ! | TGCCATTGATTGCTACACAA+GGG | + | tig0019645:82900-82919 | Msa1375170:CDS | 40.0% |
| !! | GCCCATGTTAATTTGCTACT+TGG | + | tig0019645:82979-82998 | Msa1375170:CDS | 40.0% |
| ! | TAGTACACGTAGAGCTTGTT+TGG | - | tig0019645:83326-83345 | None:intergenic | 40.0% |
| TACTCACAAGTGTTTGACAG+TGG | - | tig0019645:83383-83402 | None:intergenic | 40.0% | |
| ! | GGGACCATTTAAAACCAGTA+TGG | - | tig0019645:83571-83590 | None:intergenic | 40.0% |
| TTTAAATGGTCCCCCACTAA+TGG | + | tig0019645:83578-83597 | Msa1375170:intron | 40.0% | |
| ATCTTACCTTCCATTAGTGG+GGG | - | tig0019645:83591-83610 | None:intergenic | 40.0% | |
| CCAATCTTACCTTCCATTAG+TGG | - | tig0019645:83594-83613 | None:intergenic | 40.0% | |
| CCACTAATGGAAGGTAAGAT+TGG | + | tig0019645:83591-83610 | Msa1375170:intron | 40.0% | |
| ! | ATTGGTCTCCTCGGATTATT+CGG | + | tig0019645:83609-83628 | Msa1375170:intron | 40.0% |
| TCATTTGGATCCCAAGAATG+AGG | + | tig0019645:83878-83897 | Msa1375170:CDS | 40.0% | |
| AGTTTCTAACGCTATTGCAG+AGG | + | tig0019645:83965-83984 | Msa1375170:CDS | 40.0% | |
| TTGTCAAATAGGGGCTATAG+AGG | - | tig0019645:84072-84091 | None:intergenic | 40.0% | |
| TCTATATCGCTGAGCAATAG+CGG | + | tig0019645:84113-84132 | Msa1375170:intron | 40.0% | |
| GTGCCTCTATTTAACAACAC+TGG | + | tig0019645:84169-84188 | Msa1375170:intron | 40.0% | |
| ! | GTAACTTGTAATGTGGAGAC+TGG | + | tig0019645:84201-84220 | Msa1375170:intron | 40.0% |
| CCAGTAAGTTCTCGATACAT+AGG | - | tig0019645:84311-84330 | None:intergenic | 40.0% | |
| CCTATGTATCGAGAACTTAC+TGG | + | tig0019645:84308-84327 | Msa1375170:CDS | 40.0% | |
| ATCGAGAACTTACTGGGTTA+AGG | + | tig0019645:84315-84334 | Msa1375170:CDS | 40.0% | |
| AAAGAAGAACAGGCCAATGA+AGG | - | tig0019645:84367-84386 | None:intergenic | 40.0% | |
| TATGTCCAGTGACTTCATTG+AGG | + | tig0019645:84400-84419 | Msa1375170:CDS | 40.0% | |
| GAAATCCTCAATGAAGTCAC+TGG | - | tig0019645:84408-84427 | None:intergenic | 40.0% | |
| AAGGTGAACCGAAAACATGT+CGG | - | tig0019645:84438-84457 | None:intergenic | 40.0% | |
| ! | TGATAGCTAAGGGTGTAACA+CGG | - | tig0019645:84529-84548 | None:intergenic | 40.0% |
| ! | TTTTCAACATCCCATGGAAG+CGG | - | tig0019645:84573-84592 | None:intergenic | 40.0% |
| AAAACAAGGAATAAGGGGTG+AGG | - | tig0019645:84770-84789 | None:intergenic | 40.0% | |
| AGAACCAGCCTGATAAAACA+AGG | - | tig0019645:84784-84803 | None:intergenic | 40.0% | |
| !! | TTGTTTTATCAGGCTGGTTC+TGG | + | tig0019645:84783-84802 | Msa1375170:intron | 40.0% |
| CCAGAAATCAATTGCAACGA+AGG | - | tig0019645:84958-84977 | None:intergenic | 40.0% | |
| ! | CCTTCGTTGCAATTGATTTC+TGG | + | tig0019645:84955-84974 | Msa1375170:intron | 40.0% |
| AAGTAATAACTTGGGCGGTA+AGG | + | tig0019645:85031-85050 | Msa1375170:intron | 40.0% | |
| CGGTAAGGATATAGACAATG+AGG | + | tig0019645:85046-85065 | Msa1375170:intron | 40.0% | |
| ! | AAATCTAAGACTGATCCCCT+AGG | + | tig0019645:85340-85359 | Msa1375170:intron | 40.0% |
| TCAAAACTGCTCTCAACCTA+GGG | - | tig0019645:85359-85378 | None:intergenic | 40.0% | |
| ATCAAAACTGCTCTCAACCT+AGG | - | tig0019645:85360-85379 | None:intergenic | 40.0% | |
| !!! | GAGAGCAGTTTTGATAATGG+CGG | + | tig0019645:85365-85384 | Msa1375170:intron | 40.0% |
| ATCCCTTCACAGATTGTCTA+TGG | + | tig0019645:85448-85467 | Msa1375170:intron | 40.0% | |
| CACCATAGACAATCTGTGAA+GGG | - | tig0019645:85453-85472 | None:intergenic | 40.0% | |
| TCCCAAAATATGACTCTTGG+AGG | + | tig0019645:85521-85540 | Msa1375170:intron | 40.0% | |
| ! | GACCTCCAAGAGTCATATTT+TGG | - | tig0019645:85526-85545 | None:intergenic | 40.0% |
| TTCTTGTACCAAACAGTGGT+TGG | - | tig0019645:85580-85599 | None:intergenic | 40.0% | |
| TTTGCCTAGCTTAGCATGAT+GGG | - | tig0019645:85726-85745 | None:intergenic | 40.0% | |
| ATTTGCCTAGCTTAGCATGA+TGG | - | tig0019645:85727-85746 | None:intergenic | 40.0% | |
| TAGGCTCTTTCAGAACATCA+TGG | - | tig0019645:85980-85999 | None:intergenic | 40.0% | |
| AGTGGAAAACCATTTCACCT+GGG | - | tig0019645:86022-86041 | None:intergenic | 40.0% | |
| TAGTGGAAAACCATTTCACC+TGG | - | tig0019645:86023-86042 | None:intergenic | 40.0% | |
| GTTGCTTCCTTTCATACACT+TGG | - | tig0019645:86182-86201 | None:intergenic | 40.0% | |
| AGAATAGATACATCCATGCG+AGG | - | tig0019645:86290-86309 | None:intergenic | 40.0% | |
| ATGGCGCTATGGATGGAAAA+GGG | + | tig0019645:82674-82693 | Msa1375170:CDS | 45.0% | |
| TGATAGCAGCAATGGCTTCA+AGG | - | tig0019645:82733-82752 | None:intergenic | 45.0% | |
| TGCCCTTGTGTAGCAATCAA+TGG | - | tig0019645:82905-82924 | None:intergenic | 45.0% | |
| ! | CACGTAGAGCTTGTTTGGAT+TGG | - | tig0019645:83321-83340 | None:intergenic | 45.0% |
| ! | CTTTATAGAAGCGCAGTCCA+AGG | - | tig0019645:83504-83523 | None:intergenic | 45.0% |
| CTTGGACTGCGCTTCTATAA+AGG | + | tig0019645:83502-83521 | Msa1375170:intron | 45.0% | |
| TGCGCTTCTATAAAGGTCTC+AGG | + | tig0019645:83509-83528 | Msa1375170:intron | 45.0% | |
| !! | GAAGGTAAGATTGGTCTCCT+CGG | + | tig0019645:83600-83619 | Msa1375170:intron | 45.0% |
| TCCTCGGATTATTCGGTCTT+TGG | + | tig0019645:83616-83635 | Msa1375170:intron | 45.0% | |
| CCTCGGATTATTCGGTCTTT+GGG | + | tig0019645:83617-83636 | Msa1375170:intron | 45.0% | |
| TAACGCTATTGCAGAGGCAA+AGG | + | tig0019645:83971-83990 | Msa1375170:CDS | 45.0% | |
| GCTACTAGTGGGGAAGTTAT+TGG | + | tig0019645:84861-84880 | Msa1375170:CDS | 45.0% | |
| TGAAGAGAAAGACGCAGTTG+AGG | + | tig0019645:84887-84906 | Msa1375170:CDS | 45.0% | |
| CAAAACTGCTCTCAACCTAG+GGG | - | tig0019645:85358-85377 | None:intergenic | 45.0% | |
| !!! | GCAGTTTTGATAATGGCGGA+AGG | + | tig0019645:85369-85388 | Msa1375170:intron | 45.0% |
| TCCATACAAACACGCCATTG+CGG | + | tig0019645:85402-85421 | Msa1375170:intron | 45.0% | |
| CCACCATAGACAATCTGTGA+AGG | - | tig0019645:85454-85473 | None:intergenic | 45.0% | |
| CCTTCACAGATTGTCTATGG+TGG | + | tig0019645:85451-85470 | Msa1375170:intron | 45.0% | |
| CAAAAGATCTGTCACTGCGA+AGG | + | tig0019645:85478-85497 | Msa1375170:intron | 45.0% | |
| TTGCCTAGCTTAGCATGATG+GGG | - | tig0019645:85725-85744 | None:intergenic | 45.0% | |
| TTCATCATTCCTGAGATCCC+AGG | + | tig0019645:86002-86021 | Msa1375170:CDS | 45.0% | |
| GCTTCCTTTCATACACTTGG+AGG | - | tig0019645:86179-86198 | None:intergenic | 45.0% | |
| !! | TAATTTATCTTAAATTTAAA+AGG | - | tig0019645:85232-85251 | None:intergenic | 5.0% |
| GATGGCGCTATGGATGGAAA+AGG | + | tig0019645:82673-82692 | Msa1375170:exon | 50.0% | |
| GTCTCAGGTTTGAATCCTCC+CGG | + | tig0019645:83524-83543 | Msa1375170:intron | 50.0% | |
| CTCCCGGTACCAATTTCTGT+GGG | + | tig0019645:83540-83559 | Msa1375170:intron | 50.0% | |
| AGCCCACAGAAATTGGTACC+GGG | - | tig0019645:83545-83564 | None:intergenic | 50.0% | |
| CAGCCCACAGAAATTGGTAC+CGG | - | tig0019645:83546-83565 | None:intergenic | 50.0% | |
| ATGGACCAGCCCACAGAAAT+TGG | - | tig0019645:83552-83571 | None:intergenic | 50.0% | |
| AATGGTCCCCCACTAATGGA+AGG | + | tig0019645:83582-83601 | Msa1375170:intron | 50.0% | |
| CCCAAAGACCGAATAATCCG+AGG | - | tig0019645:83620-83639 | None:intergenic | 50.0% | |
| ! | CTGCGAGACCGACATGTTTT+CGG | + | tig0019645:84427-84446 | Msa1375170:CDS | 50.0% |
| AGAAGATCAGCCGCTTCCAT+GGG | + | tig0019645:84560-84579 | Msa1375170:intron | 50.0% | |
| GAGGTGGGAAATTGCTTTGG+AGG | - | tig0019645:84751-84770 | None:intergenic | 50.0% | |
| GGTGAGGTGGGAAATTGCTT+TGG | - | tig0019645:84754-84773 | None:intergenic | 50.0% | |
| CAAGGAATAAGGGGTGAGGT+GGG | - | tig0019645:84766-84785 | None:intergenic | 50.0% | |
| ACAAGGAATAAGGGGTGAGG+TGG | - | tig0019645:84767-84786 | None:intergenic | 50.0% | |
| GAACTGCAGCAGCTACTAGT+GGG | + | tig0019645:84850-84869 | Msa1375170:CDS | 50.0% | |
| AACTGCAGCAGCTACTAGTG+GGG | + | tig0019645:84851-84870 | Msa1375170:CDS | 50.0% | |
| AAGATCTGTCACTGCGAAGG+TGG | + | tig0019645:85481-85500 | Msa1375170:intron | 50.0% | |
| ACTCTTGGAGGTCATGTGAC+CGG | + | tig0019645:85533-85552 | Msa1375170:intron | 50.0% | |
| ACAGTGGAATAGTGGTTGGC+CGG | - | tig0019645:85555-85574 | None:intergenic | 50.0% | |
| GGTCACAGTGGAATAGTGGT+TGG | - | tig0019645:85559-85578 | None:intergenic | 50.0% | |
| ! | GGTTGGTCACAGTGGAATAG+TGG | - | tig0019645:85563-85582 | None:intergenic | 50.0% |
| ! | CAAACAGTGGTTGGTCACAG+TGG | - | tig0019645:85571-85590 | None:intergenic | 50.0% |
| CACTGTGACCAACCACTGTT+TGG | + | tig0019645:85569-85588 | Msa1375170:intron | 50.0% | |
| ! | CTAGCTTAGCATGATGGGGA+TGG | - | tig0019645:85721-85740 | None:intergenic | 50.0% |
| CATCCCCATCATGCTAAGCT+AGG | + | tig0019645:85719-85738 | Msa1375170:intron | 50.0% | |
| TCCTGAGATCCCAGGTGAAA+TGG | + | tig0019645:86010-86029 | Msa1375170:CDS | 50.0% | |
| ACCATTTCACCTGGGATCTC+AGG | - | tig0019645:86014-86033 | None:intergenic | 50.0% | |
| GGCTCCTCCAAGTGTATGAA+AGG | + | tig0019645:86172-86191 | Msa1375170:CDS | 50.0% | |
| AGAATTGGAGGAACCTCGCA+TGG | + | tig0019645:86274-86293 | Msa1375170:three_prime_UTR | 50.0% | |
| ACTTGGGACACACACAGACA+AGG | + | tig0019645:86449-86468 | Msa1375170:three_prime_UTR | 50.0% | |
| CTTGGGACACACACAGACAA+GGG | + | tig0019645:86450-86469 | Msa1375170:three_prime_UTR | 50.0% | |
| AAAGGGCAACGATGGCGCTA+TGG | + | tig0019645:82663-82682 | Msa1375170:exon | 55.0% | |
| GTCGACTAGGCTTGAGACCT+TGG | + | tig0019645:83484-83503 | Msa1375170:intron | 55.0% | |
| ! | CCACAGAAATTGGTACCGGG+AGG | - | tig0019645:83542-83561 | None:intergenic | 55.0% |
| CCTCCCGGTACCAATTTCTG+TGG | + | tig0019645:83539-83558 | Msa1375170:intron | 55.0% | |
| CGGTACCAATTTCTGTGGGC+TGG | + | tig0019645:83544-83563 | Msa1375170:intron | 55.0% | |
| !! | TTCTGTGGGCTGGTCCATAC+TGG | + | tig0019645:83554-83573 | Msa1375170:intron | 55.0% |
| CAGAAGATCAGCCGCTTCCA+TGG | + | tig0019645:84559-84578 | Msa1375170:intron | 55.0% | |
| GGAACTGCAGCAGCTACTAG+TGG | + | tig0019645:84849-84868 | Msa1375170:CDS | 55.0% | |
| GCCGCAATGGCGTGTTTGTA+TGG | - | tig0019645:85406-85425 | None:intergenic | 55.0% | |
| AAACACGCCATTGCGGCCTA+TGG | + | tig0019645:85409-85428 | Msa1375170:intron | 55.0% | |
| GTTCATCAGGCTCCCCGAAA+TGG | + | tig0019645:85928-85947 | Msa1375170:intron | 55.0% | |
| GGCAACGATGGCGCTATGGA+TGG | + | tig0019645:82667-82686 | Msa1375170:exon | 60.0% | |
| ! | GAGGCGCTACTGAGGCATAG+TGG | - | tig0019645:84053-84072 | None:intergenic | 60.0% |
| !! | GGGCTATAGAGGCGCTACTG+AGG | - | tig0019645:84061-84080 | None:intergenic | 60.0% |
| TGAAGGGATGCCCGCCATGG+CGG | - | tig0019645:85437-85456 | None:intergenic | 65.0% | |
| CTGTGAAGGGATGCCCGCCA+TGG | - | tig0019645:85440-85459 | None:intergenic | 65.0% | |
| GGCGGCACCATAGGCCGCAA+TGG | - | tig0019645:85419-85438 | None:intergenic | 70.0% | |
| !! | TGCGGCCTATGGTGCCGCCA+TGG | + | tig0019645:85420-85439 | Msa1375170:intron | 70.0% |
| !! | GGCCTATGGTGCCGCCATGG+CGG | + | tig0019645:85423-85442 | Msa1375170:intron | 70.0% |
| !! | GCCTATGGTGCCGCCATGGC+GGG | + | tig0019645:85424-85443 | Msa1375170:intron | 70.0% |
| GCCCGCCATGGCGGCACCAT+AGG | - | tig0019645:85428-85447 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019645 | gene | 82608 | 86527 | 82608 | ID=Msa1375170;Name=Msa1375170 |
| tig0019645 | mRNA | 82608 | 86527 | 82608 | ID=Msa1375170-mRNA-1;Parent=Msa1375170;Name=Msa1375170-mRNA-1;_AED=0.06;_eAED=0.06;_QI=66|0.66|0.71|1|1|1|7|297|346 |
| tig0019645 | exon | 82608 | 82778 | 82608 | ID=Msa1375170-mRNA-1:exon:4327;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 82853 | 83065 | 82853 | ID=Msa1375170-mRNA-1:exon:4328;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 83801 | 83992 | 83801 | ID=Msa1375170-mRNA-1:exon:4329;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 84263 | 84448 | 84263 | ID=Msa1375170-mRNA-1:exon:4330;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 84795 | 84927 | 84795 | ID=Msa1375170-mRNA-1:exon:4331;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 85937 | 86031 | 85937 | ID=Msa1375170-mRNA-1:exon:4332;Parent=Msa1375170-mRNA-1 |
| tig0019645 | exon | 86114 | 86527 | 86114 | ID=Msa1375170-mRNA-1:exon:4333;Parent=Msa1375170-mRNA-1 |
| tig0019645 | five_prime_UTR | 82608 | 82673 | 82608 | ID=Msa1375170-mRNA-1:five_prime_utr;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 82674 | 82778 | 82674 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 82853 | 83065 | 82853 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 83801 | 83992 | 83801 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 84263 | 84448 | 84263 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 84795 | 84927 | 84795 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 85937 | 86031 | 85937 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | CDS | 86114 | 86230 | 86114 | ID=Msa1375170-mRNA-1:cds;Parent=Msa1375170-mRNA-1 |
| tig0019645 | three_prime_UTR | 86231 | 86527 | 86231 | ID=Msa1375170-mRNA-1:three_prime_utr;Parent=Msa1375170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
