Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167610 | XP_024635206.2 | 86.607 | 336 | 14 | 1 | 1 | 305 | 1 | 336 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167610 | sp|Q54M20|TTC4_DICDI | 27.891 | 294 | 193 | 4 | 28 | 305 | 87 | 377 | 3.60e-29 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167610 | I3T7T9 | 86.310 | 336 | 15 | 1 | 1 | 305 | 1 | 336 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0167610 | 0.802968 | 4.360077e-49 | -8.615850e-47 |
| Msa0094120 | Msa0167610 | 0.819640 | 1.044428e-52 | -8.615850e-47 |
| Msa0122890 | Msa0167610 | 0.851389 | 9.164037e-61 | -8.615850e-47 |
| Msa0167610 | Msa0225740 | 0.825975 | 3.495572e-54 | -8.615850e-47 |
| Msa0167610 | Msa0425010 | 0.806872 | 6.659923e-50 | -8.615850e-47 |
| Msa0167610 | Msa0516320 | 0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0167610 | Msa0521500 | 0.800009 | 1.761866e-48 | -8.615850e-47 |
| Msa0167610 | Msa0688480 | 0.805127 | 1.551094e-49 | -8.615850e-47 |
| Msa0167610 | Msa0979730 | 0.813600 | 2.357541e-51 | -8.615850e-47 |
| Msa0167610 | Msa0994950 | 0.801743 | 7.794630e-49 | -8.615850e-47 |
| Msa0167610 | Msa1203250 | 0.818284 | 2.123675e-52 | -8.615850e-47 |
| Msa0167610 | Msa1320410 | 0.807521 | 4.854387e-50 | -8.615850e-47 |
| Msa0167610 | Msa1336110 | 0.804342 | 2.261879e-49 | -8.615850e-47 |
| Msa0167610 | Msa1375170 | 0.826180 | 3.125227e-54 | -8.615850e-47 |
| Msa0167610 | Msa1411020 | 0.804546 | 2.050877e-49 | -8.615850e-47 |
| Msa0167610 | Msa1424290 | 0.806125 | 9.572369e-50 | -8.615850e-47 |
| Msa0167610 | Msa1434350 | 0.803875 | 2.829301e-49 | -8.615850e-47 |
| Msa0167610 | Msa1439320 | 0.801275 | 9.721776e-49 | -8.615850e-47 |
| Msa0167610 | Msa1457440 | 0.807680 | 4.491492e-50 | -8.615850e-47 |
| Msa0167610 | Msa1460020 | 0.811432 | 7.023406e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167610 | MtrunA17_Chr1g0183161 | 95.708 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 1.61e-164 | 460 |
| Msa0167610 | MtrunA17_Chr1g0183151 | 86.420 | 81 | 6 | 1 | 225 | 305 | 36 | 111 | 2.37e-42 | 144 |
| Msa0167610 | MtrunA17_Chr8g0358301 | 91.935 | 62 | 5 | 0 | 171 | 232 | 3 | 64 | 1.94e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167610 | AT1G04130.1 | 59.050 | 337 | 105 | 2 | 1 | 305 | 1 | 336 | 6.99e-140 | 401 |
| Msa0167610 | AT1G04130.2 | 53.750 | 240 | 78 | 2 | 98 | 305 | 1 | 239 | 2.51e-83 | 254 |
| Msa0167610 | AT1G56440.2 | 34.337 | 166 | 93 | 7 | 35 | 198 | 78 | 229 | 4.18e-13 | 70.5 |
| Msa0167610 | AT1G56440.1 | 34.337 | 166 | 93 | 7 | 35 | 198 | 88 | 239 | 4.51e-13 | 70.5 |
Find 82 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACGAAACTGCGTTTA+AGG | 0.137028 | 1_4:+49534601 | Msa0167610:five_prime_UTR |
| GTAACTAGATTCAAGATTTC+TGG | 0.161972 | 1_4:+49538258 | Msa0167610:exon |
| CATTTACTTTGATCCATTTC+GGG | 0.194904 | 1_4:-49537976 | None:intergenic |
| CTTCTTCAATTCCTCATTCT+TGG | 0.218109 | 1_4:-49535915 | None:intergenic |
| TCATTTACTTTGATCCATTT+CGG | 0.218966 | 1_4:-49537977 | None:intergenic |
| AAAGATAATTTGTGTTGTTT+TGG | 0.283236 | 1_4:+49538368 | Msa0167610:three_prime_UTR |
| CTCAATTATAATGCTAGAAT+TGG | 0.284519 | 1_4:+49538294 | Msa0167610:three_prime_UTR |
| TCTTACCCATCTTCACATAT+TGG | 0.336932 | 1_4:-49534888 | None:intergenic |
| TTGTCAAATGGGTCTTCATT+TGG | 0.352533 | 1_4:+49535889 | Msa0167610:CDS |
| GCAGATTGAAACTAAGATAC+TGG | 0.354334 | 1_4:+49535946 | Msa0167610:CDS |
| TTCTTCAATTCCTCATTCTT+GGG | 0.354589 | 1_4:-49535914 | None:intergenic |
| ACTCCTTCAATATCTATTAG+AGG | 0.356893 | 1_4:+49536853 | Msa0167610:CDS |
| GCCCATGTTAATTTGCTACT+TGG | 0.360457 | 1_4:+49535003 | Msa0167610:CDS |
| CCTATGTATCGAGAACTTAC+TGG | 0.383520 | 1_4:+49536334 | Msa0167610:CDS |
| GCTACTAGTGGGGAAGTTAT+TGG | 0.385514 | 1_4:+49536887 | Msa0167610:CDS |
| TTTGAATTTGCTATAAAAGC+TGG | 0.386477 | 1_4:-49538173 | None:intergenic |
| ATCTCAGGAATGATGAAATT+AGG | 0.386785 | 1_4:-49538031 | None:intergenic |
| TCCTGAGATCCCAGGTGAAA+TGG | 0.390954 | 1_4:+49538045 | Msa0167610:CDS |
| ACCATTTCACCTGGGATCTC+AGG | 0.398144 | 1_4:-49538046 | None:intergenic |
| GAAAATAGAGGCTTGAAGAT+TGG | 0.400992 | 1_4:+49536307 | Msa0167610:CDS |
| GTTCATCAGGCTCCCCGAAA+TGG | 0.404916 | 1_4:+49537963 | Msa0167610:intron |
| GCAAATTCAAAGATGGAAAG+TGG | 0.409006 | 1_4:+49538185 | Msa0167610:CDS |
| TGATAGCAGCAATGGCTTCA+AGG | 0.419657 | 1_4:-49534755 | None:intergenic |
| GTACACACCTTTATATTTGA+AGG | 0.424038 | 1_4:-49535075 | None:intergenic |
| ACAAAAGTAACATCCTTCAT+TGG | 0.426238 | 1_4:+49536377 | Msa0167610:CDS |
| ATCGAGAACTTACTGGGTTA+AGG | 0.432106 | 1_4:+49536341 | Msa0167610:CDS |
| ATTCAACGAAAAGGAAGCTT+TGG | 0.437825 | 1_4:-49535843 | None:intergenic |
| AGCACAAGACTATTGTCAAA+TGG | 0.442253 | 1_4:+49535877 | Msa0167610:CDS |
| GTTTCTGCAATAGAAAATAG+AGG | 0.447295 | 1_4:+49536295 | Msa0167610:CDS |
| GGGTAACCAATATGTGAAGA+TGG | 0.450218 | 1_4:+49534882 | Msa0167610:CDS |
| GCTTCCTTTCATACACTTGG+AGG | 0.454416 | 1_4:-49538211 | None:intergenic |
| GTTGTCCCCTTCAAATATAA+AGG | 0.456100 | 1_4:+49535068 | Msa0167610:CDS |
| GTTGCTTCCTTTCATACACT+TGG | 0.457940 | 1_4:-49538214 | None:intergenic |
| GTAAGGATTGATATCAAAAC+GGG | 0.459979 | 1_4:-49538527 | None:intergenic |
| AATTATAATGCTAGAATTGG+AGG | 0.477899 | 1_4:+49538297 | Msa0167610:three_prime_UTR |
| TGTAAGGATTGATATCAAAA+CGG | 0.482878 | 1_4:-49538528 | None:intergenic |
| TCTGCATACAAAAGAAGAAC+AGG | 0.488330 | 1_4:-49536400 | None:intergenic |
| GCACAAGACTATTGTCAAAT+GGG | 0.491678 | 1_4:+49535878 | Msa0167610:CDS |
| TTCCCTCTAATAGATATTGA+AGG | 0.495729 | 1_4:-49536856 | None:intergenic |
| GATGGCGCTATGGATGGAAA+AGG | 0.498578 | 1_4:+49534698 | Msa0167610:exon |
| ATCCAACGAATTCAACGAAA+AGG | 0.499699 | 1_4:-49535852 | None:intergenic |
| ATCTTCAGCTTTAGAACTCA+AGG | 0.507144 | 1_4:+49534782 | Msa0167610:CDS |
| TGCCCTTGTGTAGCAATCAA+TGG | 0.510437 | 1_4:-49534926 | None:intergenic |
| TACACACCTTTATATTTGAA+GGG | 0.513059 | 1_4:-49535074 | None:intergenic |
| AAAGAAGAACAGGCCAATGA+AGG | 0.520736 | 1_4:-49536390 | None:intergenic |
| TATCAAAACGGGAACTAGAA+TGG | 0.522411 | 1_4:-49538516 | None:intergenic |
| AACCTTAAACGCAGTTTCGT+TGG | 0.524755 | 1_4:-49534603 | None:intergenic |
| AGATTCTTTGATAGCAGCAA+TGG | 0.528920 | 1_4:-49534763 | None:intergenic |
| TCATTTGGATCCCAAGAATG+AGG | 0.529648 | 1_4:+49535904 | Msa0167610:CDS |
| CTATGTATCGAGAACTTACT+GGG | 0.529659 | 1_4:+49536335 | Msa0167610:CDS |
| GGCAACGATGGCGCTATGGA+TGG | 0.533170 | 1_4:+49534692 | Msa0167610:exon |
| TAGGCTCTTTCAGAACATCA+TGG | 0.536783 | 1_4:-49538012 | None:intergenic |
| GAAATCCTCAATGAAGTCAC+TGG | 0.541468 | 1_4:-49536431 | None:intergenic |
| TAGTGGAAAACCATTTCACC+TGG | 0.543377 | 1_4:-49538055 | None:intergenic |
| GGCTCCTCCAAGTGTATGAA+AGG | 0.544448 | 1_4:+49538207 | Msa0167610:CDS |
| TAACGCTATTGCAGAGGCAA+AGG | 0.546218 | 1_4:+49535997 | Msa0167610:CDS |
| CCAGTAAGTTCTCGATACAT+AGG | 0.546495 | 1_4:-49536334 | None:intergenic |
| TTCCAAGTAGCAAATTAACA+TGG | 0.546678 | 1_4:-49535005 | None:intergenic |
| TTCATCATTCCTGAGATCCC+AGG | 0.547369 | 1_4:+49538037 | Msa0167610:CDS |
| CTCCTTCAATATCTATTAGA+GGG | 0.550231 | 1_4:+49536854 | Msa0167610:CDS |
| AAAGGGCAACGATGGCGCTA+TGG | 0.556727 | 1_4:+49534688 | Msa0167610:exon |
| AGAATTGGAGGAACCTCGCA+TGG | 0.558123 | 1_4:+49538309 | Msa0167610:three_prime_UTR |
| GGTAACCAATATGTGAAGAT+GGG | 0.559754 | 1_4:+49534883 | Msa0167610:CDS |
| AATGGATCAAAGTAAATGAA+AGG | 0.566088 | 1_4:+49537981 | Msa0167610:CDS |
| CAAATTCAAAGATGGAAAGT+GGG | 0.573070 | 1_4:+49538186 | Msa0167610:CDS |
| GAACTGCAGCAGCTACTAGT+GGG | 0.574587 | 1_4:+49536876 | Msa0167610:CDS |
| ATGGCGCTATGGATGGAAAA+GGG | 0.580044 | 1_4:+49534699 | Msa0167610:CDS |
| ACTTGGGACACACACAGACA+AGG | 0.584351 | 1_4:+49538484 | Msa0167610:three_prime_UTR |
| ACACACCTTTATATTTGAAG+GGG | 0.595045 | 1_4:-49535073 | None:intergenic |
| GGAACTGCAGCAGCTACTAG+TGG | 0.596282 | 1_4:+49536875 | Msa0167610:CDS |
| TCCAAGTAGCAAATTAACAT+GGG | 0.601319 | 1_4:-49535004 | None:intergenic |
| ATTTACTTTGATCCATTTCG+GGG | 0.610669 | 1_4:-49537975 | None:intergenic |
| TATGTCCAGTGACTTCATTG+AGG | 0.613206 | 1_4:+49536426 | Msa0167610:CDS |
| TGAAGAGAAAGACGCAGTTG+AGG | 0.626108 | 1_4:+49536913 | Msa0167610:CDS |
| ATGCCATTGATTGCTACACA+AGG | 0.631471 | 1_4:+49534923 | Msa0167610:CDS |
| CTTGGGACACACACAGACAA+GGG | 0.643268 | 1_4:+49538485 | Msa0167610:three_prime_UTR |
| AGTTTCTAACGCTATTGCAG+AGG | 0.653391 | 1_4:+49535991 | Msa0167610:CDS |
| AGAATAGATACATCCATGCG+AGG | 0.679215 | 1_4:-49538322 | None:intergenic |
| TGCCATTGATTGCTACACAA+GGG | 0.679278 | 1_4:+49534924 | Msa0167610:CDS |
| AACTGCAGCAGCTACTAGTG+GGG | 0.680793 | 1_4:+49536877 | Msa0167610:CDS |
| AGTGGAAAACCATTTCACCT+GGG | 0.681775 | 1_4:-49538054 | None:intergenic |
| AAGGTGAACCGAAAACATGT+CGG | 0.696850 | 1_4:-49536461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTAATATTACATTT+TGG | + | chr1_4:49537224-49537243 | Msa0167610:intron | 10.0% |
| !! | AACAAAACATTTCATATAAA+AGG | - | chr1_4:49536497-49536516 | None:intergenic | 15.0% |
| !!! | ATTCAATGTTTTTAAATTCT+TGG | + | chr1_4:49537195-49537214 | Msa0167610:intron | 15.0% |
| !!! | TTCTTTTTTGCTTTATAAAA+AGG | - | chr1_4:49537805-49537824 | None:intergenic | 15.0% |
| !!! | AATAATCTTTTTCAGGAAAA+GGG | + | chr1_4:49534862-49534881 | Msa0167610:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCGAAA+CGG | + | chr1_4:49535727-49535746 | Msa0167610:intron | 20.0% |
| !! | TGATGTTTCAATAGTAATAA+TGG | + | chr1_4:49535787-49535806 | Msa0167610:intron | 20.0% |
| !! | CACAATTTATGTTTAAAGAA+GGG | - | chr1_4:49536266-49536285 | None:intergenic | 20.0% |
| !! | TATAAAAGGATATCATATCA+AGG | - | chr1_4:49536483-49536502 | None:intergenic | 20.0% |
| !!! | ATACTAGTTTTGTGTATATA+TGG | + | chr1_4:49536529-49536548 | Msa0167610:intron | 20.0% |
| !! | ATCCAAAACCATAATAAAAA+TGG | - | chr1_4:49537129-49537148 | None:intergenic | 20.0% |
| !! | AGATAAATTAAAGAGAAGAA+TGG | + | chr1_4:49537277-49537296 | Msa0167610:intron | 20.0% |
| !!! | TTTGAAAACCAATTTTTGAA+TGG | + | chr1_4:49537643-49537662 | Msa0167610:intron | 20.0% |
| !! | AAAGAAATCCATTCAAAAAT+TGG | - | chr1_4:49537654-49537673 | None:intergenic | 20.0% |
| !! | TTAAATACATTCTTTATCGT+TGG | - | chr1_4:49537907-49537926 | None:intergenic | 20.0% |
| !!! | TTTTATAGCAAATTCAAAGA+TGG | + | chr1_4:49538178-49538197 | Msa0167610:CDS | 20.0% |
| !!! | AAAGATAATTTGTGTTGTTT+TGG | + | chr1_4:49538368-49538387 | Msa0167610:three_prime_UTR | 20.0% |
| !!! | TTTGATTTCAGATTTTTACA+AGG | + | chr1_4:49538411-49538430 | Msa0167610:three_prime_UTR | 20.0% |
| !! | GTGTGAAATCAAAATCTTTT+TGG | - | chr1_4:49534840-49534859 | None:intergenic | 25.0% |
| !!! | CAATAATCTTTTTCAGGAAA+AGG | + | chr1_4:49534861-49534880 | Msa0167610:intron | 25.0% |
| ! | TACACACCTTTATATTTGAA+GGG | - | chr1_4:49535077-49535096 | None:intergenic | 25.0% |
| !! | TAAAGGTGTGTACTTTATTA+TGG | + | chr1_4:49535085-49535104 | Msa0167610:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr1_4:49535111-49535130 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr1_4:49535112-49535131 | None:intergenic | 25.0% |
| !!! | CTTACATAAGCTATTTCTAT+AGG | + | chr1_4:49535145-49535164 | Msa0167610:intron | 25.0% |
| !!! | TAAGTTTTGTAAGACCAATT+GGG | - | chr1_4:49535297-49535316 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTAAGACCAAT+TGG | - | chr1_4:49535298-49535317 | None:intergenic | 25.0% |
| ! | ATGTTATCCTAAACAATACA+TGG | - | chr1_4:49535456-49535475 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAACTCAGTATG+CGG | - | chr1_4:49535667-49535686 | None:intergenic | 25.0% |
| ! | AATGGTAACTGTGATTTATT+AGG | + | chr1_4:49535805-49535824 | Msa0167610:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+GGG | - | chr1_4:49536107-49536126 | None:intergenic | 25.0% |
| ! | GTACAAAATGTTGTCAAATA+GGG | - | chr1_4:49536108-49536127 | None:intergenic | 25.0% |
| ! | AGTACAAAATGTTGTCAAAT+AGG | - | chr1_4:49536109-49536128 | None:intergenic | 25.0% |
| ! | GCACAATTTATGTTTAAAGA+AGG | - | chr1_4:49536267-49536286 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAATTGTGC+AGG | + | chr1_4:49536267-49536286 | Msa0167610:intron | 25.0% |
| !! | AAAATACGTTTGATAGCTAA+GGG | - | chr1_4:49536565-49536584 | None:intergenic | 25.0% |
| ! | ATTTATTGAGTTATACTACG+AGG | + | chr1_4:49536634-49536653 | Msa0167610:intron | 25.0% |
| !!! | TTTGACATGGTGATATTTTT+TGG | + | chr1_4:49536701-49536720 | Msa0167610:intron | 25.0% |
| ! | ACTTCATTTCCCTAATATAA+TGG | + | chr1_4:49537020-49537039 | Msa0167610:intron | 25.0% |
| ! | CAGTATGAACCATTATATTA+GGG | - | chr1_4:49537032-49537051 | None:intergenic | 25.0% |
| ! | ACAGTATGAACCATTATATT+AGG | - | chr1_4:49537033-49537052 | None:intergenic | 25.0% |
| ! | ACTGTGTTAAAGTAATAACT+TGG | + | chr1_4:49537048-49537067 | Msa0167610:intron | 25.0% |
| ! | CTGTGTTAAAGTAATAACTT+GGG | + | chr1_4:49537049-49537068 | Msa0167610:intron | 25.0% |
| !!! | AGCCATTTTTATTATGGTTT+TGG | + | chr1_4:49537124-49537143 | Msa0167610:intron | 25.0% |
| ! | AAAAAGAAAAAAAACTCCCT+TGG | + | chr1_4:49537817-49537836 | Msa0167610:intron | 25.0% |
| ! | TTGTTAAACATATGTGACAA+GGG | - | chr1_4:49537868-49537887 | None:intergenic | 25.0% |
| ! | TTTGTTAAACATATGTGACA+AGG | - | chr1_4:49537869-49537888 | None:intergenic | 25.0% |
| ! | CACATATGTTTAACAAAATG+AGG | + | chr1_4:49537872-49537891 | Msa0167610:intron | 25.0% |
| ! | TCATTTACTTTGATCCATTT+CGG | - | chr1_4:49537980-49537999 | None:intergenic | 25.0% |
| ! | AATGGATCAAAGTAAATGAA+AGG | + | chr1_4:49537981-49538000 | Msa0167610:CDS | 25.0% |
| !!! | TTTGAATTTGCTATAAAAGC+TGG | - | chr1_4:49538176-49538195 | None:intergenic | 25.0% |
| ! | CTCAATTATAATGCTAGAAT+TGG | + | chr1_4:49538294-49538313 | Msa0167610:three_prime_UTR | 25.0% |
| ! | AATTATAATGCTAGAATTGG+AGG | + | chr1_4:49538297-49538316 | Msa0167610:three_prime_UTR | 25.0% |
| !!! | GTTTTGGTACATGTATAATT+TGG | + | chr1_4:49538384-49538403 | Msa0167610:three_prime_UTR | 25.0% |
| !!! | TTCAAATTTCGTTTTTCACT+TGG | + | chr1_4:49538467-49538486 | Msa0167610:three_prime_UTR | 25.0% |
| !!! | TCAAATTTCGTTTTTCACTT+GGG | + | chr1_4:49538468-49538487 | Msa0167610:three_prime_UTR | 25.0% |
| ! | TGTAAGGATTGATATCAAAA+CGG | - | chr1_4:49538531-49538550 | None:intergenic | 25.0% |
| AGCAAGCAAAAAGAGAAAAA+GGG | + | chr1_4:49534671-49534690 | Msa0167610:five_prime_UTR | 30.0% | |
| ! | CACACTCAATAATCTTTTTC+AGG | + | chr1_4:49534855-49534874 | Msa0167610:intron | 30.0% |
| TCCAAGTAGCAAATTAACAT+GGG | - | chr1_4:49535007-49535026 | None:intergenic | 30.0% | |
| TTCCAAGTAGCAAATTAACA+TGG | - | chr1_4:49535008-49535027 | None:intergenic | 30.0% | |
| !! | TGCTACTTGGAAATTTTAGA+AGG | + | chr1_4:49535016-49535035 | Msa0167610:CDS | 30.0% |
| !! | GCTACTTGGAAATTTTAGAA+GGG | + | chr1_4:49535017-49535036 | Msa0167610:CDS | 30.0% |
| ACACACCTTTATATTTGAAG+GGG | - | chr1_4:49535076-49535095 | None:intergenic | 30.0% | |
| GTACACACCTTTATATTTGA+AGG | - | chr1_4:49535078-49535097 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr1_4:49535206-49535225 | Msa0167610:intron | 30.0% |
| ! | CTTATTTGAGCTTTATCTAG+TGG | - | chr1_4:49535322-49535341 | None:intergenic | 30.0% |
| GAAATGTCCATGTATTGTTT+AGG | + | chr1_4:49535446-49535465 | Msa0167610:intron | 30.0% | |
| ! | TATATGAAAACATGTCGACT+AGG | + | chr1_4:49535495-49535514 | Msa0167610:intron | 30.0% |
| !!! | TAGTCCATACTGGTTTTAAA+TGG | + | chr1_4:49535588-49535607 | Msa0167610:intron | 30.0% |
| TTCTTCAATTCCTCATTCTT+GGG | - | chr1_4:49535917-49535936 | None:intergenic | 30.0% | |
| ! | CTTTGAACTGTTTTCTTTAG+TGG | + | chr1_4:49536028-49536047 | Msa0167610:intron | 30.0% |
| ! | AAACCAGTGTTGTTAAATAG+AGG | - | chr1_4:49536201-49536220 | None:intergenic | 30.0% |
| ! | TTCTCATGTAACTTGTAATG+TGG | + | chr1_4:49536220-49536239 | Msa0167610:intron | 30.0% |
| GTTTCTGCAATAGAAAATAG+AGG | + | chr1_4:49536295-49536314 | Msa0167610:CDS | 30.0% | |
| !!! | ATGTTACTTTTGTCTAACAC+AGG | - | chr1_4:49536370-49536389 | None:intergenic | 30.0% |
| ACAAAAGTAACATCCTTCAT+TGG | + | chr1_4:49536377-49536396 | Msa0167610:CDS | 30.0% | |
| ! | GAAAATACGTTTGATAGCTA+AGG | - | chr1_4:49536566-49536585 | None:intergenic | 30.0% |
| ! | TAATTGTTTTCAACATCCCA+TGG | - | chr1_4:49536605-49536624 | None:intergenic | 30.0% |
| CTACAAGTACACAATTTCAA+TGG | - | chr1_4:49536674-49536693 | None:intergenic | 30.0% | |
| ! | TTGTAGTTACTAGTTTGACA+TGG | + | chr1_4:49536688-49536707 | Msa0167610:intron | 30.0% |
| ! | TTTGGCAAAATCGTTCATTT+TGG | + | chr1_4:49536719-49536738 | Msa0167610:intron | 30.0% |
| ! | GCATATTTTGTGTCAAATGT+TGG | + | chr1_4:49536741-49536760 | Msa0167610:intron | 30.0% |
| CTGATAAAACAAGGAATAAG+GGG | - | chr1_4:49536801-49536820 | None:intergenic | 30.0% | |
| CCTGATAAAACAAGGAATAA+GGG | - | chr1_4:49536802-49536821 | None:intergenic | 30.0% | |
| ACTCCTTCAATATCTATTAG+AGG | + | chr1_4:49536853-49536872 | Msa0167610:CDS | 30.0% | |
| CTCCTTCAATATCTATTAGA+GGG | + | chr1_4:49536854-49536873 | Msa0167610:CDS | 30.0% | |
| TTCCCTCTAATAGATATTGA+AGG | - | chr1_4:49536859-49536878 | None:intergenic | 30.0% | |
| TGTTAAAGTAATAACTTGGG+CGG | + | chr1_4:49537052-49537071 | Msa0167610:intron | 30.0% | |
| !!! | ATAGCGAGCCATTTTTATTA+TGG | + | chr1_4:49537118-49537137 | Msa0167610:intron | 30.0% |
| GGATGATAAAAGTAGTTCAT+AGG | + | chr1_4:49537145-49537164 | Msa0167610:intron | 30.0% | |
| AGTTAGTGAAATCTATGACT+AGG | + | chr1_4:49537332-49537351 | Msa0167610:intron | 30.0% | |
| GTTAGTGAAATCTATGACTA+GGG | + | chr1_4:49537333-49537352 | Msa0167610:intron | 30.0% | |
| AGTCTTAGAGTTATGACTAT+GGG | - | chr1_4:49537367-49537386 | None:intergenic | 30.0% | |
| TTAAACTTATGATGTGCCAA+GGG | - | chr1_4:49537836-49537855 | None:intergenic | 30.0% | |
| TAACAGAATGTATGTTCATC+AGG | + | chr1_4:49537950-49537969 | Msa0167610:intron | 30.0% | |
| ATTTACTTTGATCCATTTCG+GGG | - | chr1_4:49537978-49537997 | None:intergenic | 30.0% | |
| CATTTACTTTGATCCATTTC+GGG | - | chr1_4:49537979-49537998 | None:intergenic | 30.0% | |
| ATCTCAGGAATGATGAAATT+AGG | - | chr1_4:49538034-49538053 | None:intergenic | 30.0% | |
| ! | AACAAAAGTATGTCTTCTAG+TGG | - | chr1_4:49538075-49538094 | None:intergenic | 30.0% |
| GAAACTCTAAACAGAATCAA+TGG | - | chr1_4:49538102-49538121 | None:intergenic | 30.0% | |
| CAAATTCAAAGATGGAAAGT+GGG | + | chr1_4:49538186-49538205 | Msa0167610:CDS | 30.0% | |
| GTAACTAGATTCAAGATTTC+TGG | + | chr1_4:49538258-49538277 | Msa0167610:exon | 30.0% | |
| ! | TCAGATTTTTACAAGGTTAC+AGG | + | chr1_4:49538418-49538437 | Msa0167610:three_prime_UTR | 30.0% |
| GTAAGGATTGATATCAAAAC+GGG | - | chr1_4:49538530-49538549 | None:intergenic | 30.0% | |
| GAGCAAGCAAAAAGAGAAAA+AGG | + | chr1_4:49534670-49534689 | Msa0167610:five_prime_UTR | 35.0% | |
| ! | AGATTCTTTGATAGCAGCAA+TGG | - | chr1_4:49534766-49534785 | None:intergenic | 35.0% |
| !! | ATCTTCAGCTTTAGAACTCA+AGG | + | chr1_4:49534782-49534801 | Msa0167610:CDS | 35.0% |
| GGTAACCAATATGTGAAGAT+GGG | + | chr1_4:49534883-49534902 | Msa0167610:CDS | 35.0% | |
| TCTTACCCATCTTCACATAT+TGG | - | chr1_4:49534891-49534910 | None:intergenic | 35.0% | |
| GTTGTCCCCTTCAAATATAA+AGG | + | chr1_4:49535068-49535087 | Msa0167610:CDS | 35.0% | |
| TACTTTATTATGGCCCTGTT+TGG | + | chr1_4:49535095-49535114 | Msa0167610:intron | 35.0% | |
| TGCTTATAAGTTCTCCCAAT+TGG | + | chr1_4:49535280-49535299 | Msa0167610:intron | 35.0% | |
| AATCTTACCTTCCATTAGTG+GGG | - | chr1_4:49535616-49535635 | None:intergenic | 35.0% | |
| CAATCTTACCTTCCATTAGT+GGG | - | chr1_4:49535617-49535636 | None:intergenic | 35.0% | |
| ACAAGAAGCAAACAAACACA+TGG | - | chr1_4:49535755-49535774 | None:intergenic | 35.0% | |
| GTTTGCTTCTTGTAATTCCT+TGG | + | chr1_4:49535762-49535781 | Msa0167610:intron | 35.0% | |
| ACTATTGAAACATCAGACCA+AGG | - | chr1_4:49535782-49535801 | None:intergenic | 35.0% | |
| ATTCAACGAAAAGGAAGCTT+TGG | - | chr1_4:49535846-49535865 | None:intergenic | 35.0% | |
| ! | TTCCTTTTCGTTGAATTCGT+TGG | + | chr1_4:49535850-49535869 | Msa0167610:CDS | 35.0% |
| ATCCAACGAATTCAACGAAA+AGG | - | chr1_4:49535855-49535874 | None:intergenic | 35.0% | |
| AGCACAAGACTATTGTCAAA+TGG | + | chr1_4:49535877-49535896 | Msa0167610:CDS | 35.0% | |
| GCACAAGACTATTGTCAAAT+GGG | + | chr1_4:49535878-49535897 | Msa0167610:CDS | 35.0% | |
| TTGTCAAATGGGTCTTCATT+TGG | + | chr1_4:49535889-49535908 | Msa0167610:CDS | 35.0% | |
| CTTCTTCAATTCCTCATTCT+TGG | - | chr1_4:49535918-49535937 | None:intergenic | 35.0% | |
| GCAGATTGAAACTAAGATAC+TGG | + | chr1_4:49535946-49535965 | Msa0167610:CDS | 35.0% | |
| ACTGGAGAATGAAAAACATG+AGG | + | chr1_4:49535964-49535983 | Msa0167610:CDS | 35.0% | |
| GAAAATAGAGGCTTGAAGAT+TGG | + | chr1_4:49536307-49536326 | Msa0167610:CDS | 35.0% | |
| CTATGTATCGAGAACTTACT+GGG | + | chr1_4:49536335-49536354 | Msa0167610:CDS | 35.0% | |
| TCTGCATACAAAAGAAGAAC+AGG | - | chr1_4:49536403-49536422 | None:intergenic | 35.0% | |
| !!! | CCCTTATTCCTTGTTTTATC+AGG | + | chr1_4:49536799-49536818 | Msa0167610:intron | 35.0% |
| GCCTGATAAAACAAGGAATA+AGG | - | chr1_4:49536803-49536822 | None:intergenic | 35.0% | |
| !!! | TATTCCTTGTTTTATCAGGC+TGG | + | chr1_4:49536803-49536822 | Msa0167610:intron | 35.0% |
| ! | AGTTTTTGCTTAGATAGACG+AGG | - | chr1_4:49536836-49536855 | None:intergenic | 35.0% |
| ACAATGAGGAAAACACCTAT+TGG | + | chr1_4:49537086-49537105 | Msa0167610:intron | 35.0% | |
| CGCTATAAATCATCACCAAT+AGG | - | chr1_4:49537104-49537123 | None:intergenic | 35.0% | |
| CAGTCTTAGAGTTATGACTA+TGG | - | chr1_4:49537368-49537387 | None:intergenic | 35.0% | |
| !! | GTTGAGAGCAGTTTTGATAA+TGG | + | chr1_4:49537397-49537416 | Msa0167610:intron | 35.0% |
| GTGTTTGTATGGAAGATCAT+TGG | - | chr1_4:49537430-49537449 | None:intergenic | 35.0% | |
| !! | CAAGAGTCATATTTTGGGAA+AGG | - | chr1_4:49537555-49537574 | None:intergenic | 35.0% |
| CTTTCCCAAAATATGACTCT+TGG | + | chr1_4:49537553-49537572 | Msa0167610:intron | 35.0% | |
| ! | ACCTCCAAGAGTCATATTTT+GGG | - | chr1_4:49537560-49537579 | None:intergenic | 35.0% |
| TAAGTTCTTGTACCAAACAG+TGG | - | chr1_4:49537619-49537638 | None:intergenic | 35.0% | |
| !!! | GGGGATGGTTTTAAAATGTT+AGG | - | chr1_4:49537741-49537760 | None:intergenic | 35.0% |
| AAGGAGAAATCTAGTGAAAG+AGG | - | chr1_4:49537786-49537805 | None:intergenic | 35.0% | |
| GTTAAACTTATGATGTGCCA+AGG | - | chr1_4:49537837-49537856 | None:intergenic | 35.0% | |
| GCAAATTCAAAGATGGAAAG+TGG | + | chr1_4:49538185-49538204 | Msa0167610:CDS | 35.0% | |
| TATCAAAACGGGAACTAGAA+TGG | - | chr1_4:49538519-49538538 | None:intergenic | 35.0% | |
| TTCCAACGAAACTGCGTTTA+AGG | + | chr1_4:49534601-49534620 | Msa0167610:five_prime_UTR | 40.0% | |
| AACCTTAAACGCAGTTTCGT+TGG | - | chr1_4:49534606-49534625 | None:intergenic | 40.0% | |
| AAAGAGAAAAAGGGCAACGA+TGG | + | chr1_4:49534680-49534699 | Msa0167610:exon | 40.0% | |
| ! | GCTTTCTCGTTTTCGGTTAA+AGG | - | chr1_4:49534732-49534751 | None:intergenic | 40.0% |
| ! | AAGGTCTGCTTTCTCGTTTT+CGG | - | chr1_4:49534739-49534758 | None:intergenic | 40.0% |
| GGGTAACCAATATGTGAAGA+TGG | + | chr1_4:49534882-49534901 | Msa0167610:CDS | 40.0% | |
| ! | ATGCCATTGATTGCTACACA+AGG | + | chr1_4:49534923-49534942 | Msa0167610:CDS | 40.0% |
| ! | TGCCATTGATTGCTACACAA+GGG | + | chr1_4:49534924-49534943 | Msa0167610:CDS | 40.0% |
| !! | GCCCATGTTAATTTGCTACT+TGG | + | chr1_4:49535003-49535022 | Msa0167610:CDS | 40.0% |
| ! | TAGTACACGTAGAGCTTGTT+TGG | - | chr1_4:49535350-49535369 | None:intergenic | 40.0% |
| TACTCACAAGTGTTTGACAG+TGG | - | chr1_4:49535407-49535426 | None:intergenic | 40.0% | |
| ! | GGGACCATTTAAAACCAGTA+TGG | - | chr1_4:49535595-49535614 | None:intergenic | 40.0% |
| TTTAAATGGTCCCCCACTAA+TGG | + | chr1_4:49535602-49535621 | Msa0167610:intron | 40.0% | |
| ATCTTACCTTCCATTAGTGG+GGG | - | chr1_4:49535615-49535634 | None:intergenic | 40.0% | |
| CCAATCTTACCTTCCATTAG+TGG | - | chr1_4:49535618-49535637 | None:intergenic | 40.0% | |
| CCACTAATGGAAGGTAAGAT+TGG | + | chr1_4:49535615-49535634 | Msa0167610:intron | 40.0% | |
| ! | ATTGGTCTCCTCGGATTATT+CGG | + | chr1_4:49535633-49535652 | Msa0167610:intron | 40.0% |
| TCATTTGGATCCCAAGAATG+AGG | + | chr1_4:49535904-49535923 | Msa0167610:CDS | 40.0% | |
| AGTTTCTAACGCTATTGCAG+AGG | + | chr1_4:49535991-49536010 | Msa0167610:CDS | 40.0% | |
| TTGTCAAATAGGGGCTATAG+AGG | - | chr1_4:49536098-49536117 | None:intergenic | 40.0% | |
| TCTATATCGCTGAGCAATAG+CGG | + | chr1_4:49536139-49536158 | Msa0167610:intron | 40.0% | |
| GTGCCTCTATTTAACAACAC+TGG | + | chr1_4:49536195-49536214 | Msa0167610:intron | 40.0% | |
| ! | GTAACTTGTAATGTGGAGAC+TGG | + | chr1_4:49536227-49536246 | Msa0167610:intron | 40.0% |
| CCAGTAAGTTCTCGATACAT+AGG | - | chr1_4:49536337-49536356 | None:intergenic | 40.0% | |
| CCTATGTATCGAGAACTTAC+TGG | + | chr1_4:49536334-49536353 | Msa0167610:CDS | 40.0% | |
| ATCGAGAACTTACTGGGTTA+AGG | + | chr1_4:49536341-49536360 | Msa0167610:CDS | 40.0% | |
| AAAGAAGAACAGGCCAATGA+AGG | - | chr1_4:49536393-49536412 | None:intergenic | 40.0% | |
| TATGTCCAGTGACTTCATTG+AGG | + | chr1_4:49536426-49536445 | Msa0167610:CDS | 40.0% | |
| GAAATCCTCAATGAAGTCAC+TGG | - | chr1_4:49536434-49536453 | None:intergenic | 40.0% | |
| AAGGTGAACCGAAAACATGT+CGG | - | chr1_4:49536464-49536483 | None:intergenic | 40.0% | |
| ! | TGATAGCTAAGGGTGTAACA+CGG | - | chr1_4:49536555-49536574 | None:intergenic | 40.0% |
| ! | TTTTCAACATCCCATGGAAG+CGG | - | chr1_4:49536599-49536618 | None:intergenic | 40.0% |
| AAAACAAGGAATAAGGGGTG+AGG | - | chr1_4:49536796-49536815 | None:intergenic | 40.0% | |
| AGAACCAGCCTGATAAAACA+AGG | - | chr1_4:49536810-49536829 | None:intergenic | 40.0% | |
| !! | TTGTTTTATCAGGCTGGTTC+TGG | + | chr1_4:49536809-49536828 | Msa0167610:intron | 40.0% |
| CCAGAAATCAATTGCAACGA+AGG | - | chr1_4:49536984-49537003 | None:intergenic | 40.0% | |
| ! | CCTTCGTTGCAATTGATTTC+TGG | + | chr1_4:49536981-49537000 | Msa0167610:intron | 40.0% |
| AAGTAATAACTTGGGCGGTA+AGG | + | chr1_4:49537057-49537076 | Msa0167610:intron | 40.0% | |
| CGGTAAGGATATAGACAATG+AGG | + | chr1_4:49537072-49537091 | Msa0167610:intron | 40.0% | |
| TCAAAACTGCTCTCAACCTA+GGG | - | chr1_4:49537394-49537413 | None:intergenic | 40.0% | |
| ATCAAAACTGCTCTCAACCT+AGG | - | chr1_4:49537395-49537414 | None:intergenic | 40.0% | |
| !!! | GAGAGCAGTTTTGATAATGG+CGG | + | chr1_4:49537400-49537419 | Msa0167610:intron | 40.0% |
| ATCCCTTCACAGATTGTCTA+TGG | + | chr1_4:49537483-49537502 | Msa0167610:intron | 40.0% | |
| CACCATAGACAATCTGTGAA+GGG | - | chr1_4:49537488-49537507 | None:intergenic | 40.0% | |
| TCCCAAAATATGACTCTTGG+AGG | + | chr1_4:49537556-49537575 | Msa0167610:intron | 40.0% | |
| ! | GACCTCCAAGAGTCATATTT+TGG | - | chr1_4:49537561-49537580 | None:intergenic | 40.0% |
| TTCTTGTACCAAACAGTGGT+TGG | - | chr1_4:49537615-49537634 | None:intergenic | 40.0% | |
| TTTGCCTAGCTTAGCATGAT+GGG | - | chr1_4:49537761-49537780 | None:intergenic | 40.0% | |
| ATTTGCCTAGCTTAGCATGA+TGG | - | chr1_4:49537762-49537781 | None:intergenic | 40.0% | |
| TAGGCTCTTTCAGAACATCA+TGG | - | chr1_4:49538015-49538034 | None:intergenic | 40.0% | |
| AGTGGAAAACCATTTCACCT+GGG | - | chr1_4:49538057-49538076 | None:intergenic | 40.0% | |
| TAGTGGAAAACCATTTCACC+TGG | - | chr1_4:49538058-49538077 | None:intergenic | 40.0% | |
| GTTGCTTCCTTTCATACACT+TGG | - | chr1_4:49538217-49538236 | None:intergenic | 40.0% | |
| AGAATAGATACATCCATGCG+AGG | - | chr1_4:49538325-49538344 | None:intergenic | 40.0% | |
| ATGGCGCTATGGATGGAAAA+GGG | + | chr1_4:49534699-49534718 | Msa0167610:CDS | 45.0% | |
| TGATAGCAGCAATGGCTTCA+AGG | - | chr1_4:49534758-49534777 | None:intergenic | 45.0% | |
| TGCCCTTGTGTAGCAATCAA+TGG | - | chr1_4:49534929-49534948 | None:intergenic | 45.0% | |
| ! | CACGTAGAGCTTGTTTGGAT+TGG | - | chr1_4:49535345-49535364 | None:intergenic | 45.0% |
| ! | CTTTATAGAAGCGCAGTCCA+AGG | - | chr1_4:49535528-49535547 | None:intergenic | 45.0% |
| CTTGGACTGCGCTTCTATAA+AGG | + | chr1_4:49535526-49535545 | Msa0167610:intron | 45.0% | |
| TGCGCTTCTATAAAGGTCTC+AGG | + | chr1_4:49535533-49535552 | Msa0167610:intron | 45.0% | |
| TAGCCCACAGAAATTGGTAC+CGG | - | chr1_4:49535570-49535589 | None:intergenic | 45.0% | |
| !! | ATGGACTAGCCCACAGAAAT+TGG | - | chr1_4:49535576-49535595 | None:intergenic | 45.0% |
| !! | GAAGGTAAGATTGGTCTCCT+CGG | + | chr1_4:49535624-49535643 | Msa0167610:intron | 45.0% |
| TCCTCGGATTATTCGGTCTT+TGG | + | chr1_4:49535640-49535659 | Msa0167610:intron | 45.0% | |
| CCTCGGATTATTCGGTCTTT+GGG | + | chr1_4:49535641-49535660 | Msa0167610:intron | 45.0% | |
| TAACGCTATTGCAGAGGCAA+AGG | + | chr1_4:49535997-49536016 | Msa0167610:CDS | 45.0% | |
| GCTACTAGTGGGGAAGTTAT+TGG | + | chr1_4:49536887-49536906 | Msa0167610:CDS | 45.0% | |
| TGAAGAGAAAGACGCAGTTG+AGG | + | chr1_4:49536913-49536932 | Msa0167610:CDS | 45.0% | |
| !! | AACTCTAAGACTGATCCCCT+AGG | + | chr1_4:49537375-49537394 | Msa0167610:intron | 45.0% |
| CAAAACTGCTCTCAACCTAG+GGG | - | chr1_4:49537393-49537412 | None:intergenic | 45.0% | |
| !!! | GCAGTTTTGATAATGGCGGA+AGG | + | chr1_4:49537404-49537423 | Msa0167610:intron | 45.0% |
| TCCATACAAACACGCCATTG+CGG | + | chr1_4:49537437-49537456 | Msa0167610:intron | 45.0% | |
| CCACCATAGACAATCTGTGA+AGG | - | chr1_4:49537489-49537508 | None:intergenic | 45.0% | |
| CCTTCACAGATTGTCTATGG+TGG | + | chr1_4:49537486-49537505 | Msa0167610:intron | 45.0% | |
| CAAAAGATCTGTCACTGCGA+AGG | + | chr1_4:49537513-49537532 | Msa0167610:intron | 45.0% | |
| TTGCCTAGCTTAGCATGATG+GGG | - | chr1_4:49537760-49537779 | None:intergenic | 45.0% | |
| TTCATCATTCCTGAGATCCC+AGG | + | chr1_4:49538037-49538056 | Msa0167610:CDS | 45.0% | |
| GCTTCCTTTCATACACTTGG+AGG | - | chr1_4:49538214-49538233 | None:intergenic | 45.0% | |
| !! | TAATTTATCTTAAATTTAAA+AGG | - | chr1_4:49537267-49537286 | None:intergenic | 5.0% |
| GATGGCGCTATGGATGGAAA+AGG | + | chr1_4:49534698-49534717 | Msa0167610:exon | 50.0% | |
| GTCTCAGGTTTGAATCCTCC+CGG | + | chr1_4:49535548-49535567 | Msa0167610:intron | 50.0% | |
| CTCCCGGTACCAATTTCTGT+GGG | + | chr1_4:49535564-49535583 | Msa0167610:intron | 50.0% | |
| AGCCCACAGAAATTGGTACC+GGG | - | chr1_4:49535569-49535588 | None:intergenic | 50.0% | |
| !! | TTCTGTGGGCTAGTCCATAC+TGG | + | chr1_4:49535578-49535597 | Msa0167610:intron | 50.0% |
| AATGGTCCCCCACTAATGGA+AGG | + | chr1_4:49535606-49535625 | Msa0167610:intron | 50.0% | |
| CCCAAAGACCGAATAATCCG+AGG | - | chr1_4:49535644-49535663 | None:intergenic | 50.0% | |
| ! | CTGCGAGACCGACATGTTTT+CGG | + | chr1_4:49536453-49536472 | Msa0167610:CDS | 50.0% |
| AGAAGATCAGCCGCTTCCAT+GGG | + | chr1_4:49536586-49536605 | Msa0167610:intron | 50.0% | |
| GAGGTGGGAAATTGCTTTGG+AGG | - | chr1_4:49536777-49536796 | None:intergenic | 50.0% | |
| GGTGAGGTGGGAAATTGCTT+TGG | - | chr1_4:49536780-49536799 | None:intergenic | 50.0% | |
| CAAGGAATAAGGGGTGAGGT+GGG | - | chr1_4:49536792-49536811 | None:intergenic | 50.0% | |
| ACAAGGAATAAGGGGTGAGG+TGG | - | chr1_4:49536793-49536812 | None:intergenic | 50.0% | |
| GAACTGCAGCAGCTACTAGT+GGG | + | chr1_4:49536876-49536895 | Msa0167610:CDS | 50.0% | |
| AACTGCAGCAGCTACTAGTG+GGG | + | chr1_4:49536877-49536896 | Msa0167610:CDS | 50.0% | |
| AAGATCTGTCACTGCGAAGG+TGG | + | chr1_4:49537516-49537535 | Msa0167610:intron | 50.0% | |
| ACTCTTGGAGGTCATGTGAC+CGG | + | chr1_4:49537568-49537587 | Msa0167610:intron | 50.0% | |
| ACAGTGGAATAGTGGTTGGC+CGG | - | chr1_4:49537590-49537609 | None:intergenic | 50.0% | |
| GGTCACAGTGGAATAGTGGT+TGG | - | chr1_4:49537594-49537613 | None:intergenic | 50.0% | |
| ! | GGTTGGTCACAGTGGAATAG+TGG | - | chr1_4:49537598-49537617 | None:intergenic | 50.0% |
| ! | CAAACAGTGGTTGGTCACAG+TGG | - | chr1_4:49537606-49537625 | None:intergenic | 50.0% |
| CACTGTGACCAACCACTGTT+TGG | + | chr1_4:49537604-49537623 | Msa0167610:intron | 50.0% | |
| ! | CTAGCTTAGCATGATGGGGA+TGG | - | chr1_4:49537756-49537775 | None:intergenic | 50.0% |
| CATCCCCATCATGCTAAGCT+AGG | + | chr1_4:49537754-49537773 | Msa0167610:intron | 50.0% | |
| TCCTGAGATCCCAGGTGAAA+TGG | + | chr1_4:49538045-49538064 | Msa0167610:CDS | 50.0% | |
| ACCATTTCACCTGGGATCTC+AGG | - | chr1_4:49538049-49538068 | None:intergenic | 50.0% | |
| GGCTCCTCCAAGTGTATGAA+AGG | + | chr1_4:49538207-49538226 | Msa0167610:CDS | 50.0% | |
| AGAATTGGAGGAACCTCGCA+TGG | + | chr1_4:49538309-49538328 | Msa0167610:three_prime_UTR | 50.0% | |
| ACTTGGGACACACACAGACA+AGG | + | chr1_4:49538484-49538503 | Msa0167610:three_prime_UTR | 50.0% | |
| CTTGGGACACACACAGACAA+GGG | + | chr1_4:49538485-49538504 | Msa0167610:three_prime_UTR | 50.0% | |
| AAAGGGCAACGATGGCGCTA+TGG | + | chr1_4:49534688-49534707 | Msa0167610:exon | 55.0% | |
| GTCGACTAGGCTTGAGACCT+TGG | + | chr1_4:49535508-49535527 | Msa0167610:intron | 55.0% | |
| ! | CCACAGAAATTGGTACCGGG+AGG | - | chr1_4:49535566-49535585 | None:intergenic | 55.0% |
| CCTCCCGGTACCAATTTCTG+TGG | + | chr1_4:49535563-49535582 | Msa0167610:intron | 55.0% | |
| CAGAAGATCAGCCGCTTCCA+TGG | + | chr1_4:49536585-49536604 | Msa0167610:intron | 55.0% | |
| GGAACTGCAGCAGCTACTAG+TGG | + | chr1_4:49536875-49536894 | Msa0167610:CDS | 55.0% | |
| GCCGCAATGGCGTGTTTGTA+TGG | - | chr1_4:49537441-49537460 | None:intergenic | 55.0% | |
| AAACACGCCATTGCGGCCTA+TGG | + | chr1_4:49537444-49537463 | Msa0167610:intron | 55.0% | |
| GTTCATCAGGCTCCCCGAAA+TGG | + | chr1_4:49537963-49537982 | Msa0167610:intron | 55.0% | |
| GGCAACGATGGCGCTATGGA+TGG | + | chr1_4:49534692-49534711 | Msa0167610:exon | 60.0% | |
| ! | GAGGCGCTACTGAGGCATAG+TGG | - | chr1_4:49536079-49536098 | None:intergenic | 60.0% |
| !! | GGGCTATAGAGGCGCTACTG+AGG | - | chr1_4:49536087-49536106 | None:intergenic | 60.0% |
| TGAAGGGATGCCCGCCATGG+CGG | - | chr1_4:49537472-49537491 | None:intergenic | 65.0% | |
| CTGTGAAGGGATGCCCGCCA+TGG | - | chr1_4:49537475-49537494 | None:intergenic | 65.0% | |
| GGCGGCACCATAGGCCGCAA+TGG | - | chr1_4:49537454-49537473 | None:intergenic | 70.0% | |
| !! | TGCGGCCTATGGTGCCGCCA+TGG | + | chr1_4:49537455-49537474 | Msa0167610:intron | 70.0% |
| !! | GGCCTATGGTGCCGCCATGG+CGG | + | chr1_4:49537458-49537477 | Msa0167610:intron | 70.0% |
| !! | GCCTATGGTGCCGCCATGGC+GGG | + | chr1_4:49537459-49537478 | Msa0167610:intron | 70.0% |
| GCCCGCCATGGCGGCACCAT+AGG | - | chr1_4:49537463-49537482 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49534575 | 49538562 | 49534575 | ID=Msa0167610;Name=Msa0167610 |
| chr1_4 | mRNA | 49534575 | 49538562 | 49534575 | ID=Msa0167610-mRNA-1;Parent=Msa0167610;Name=Msa0167610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=124|0.66|0.71|1|1|1|7|297|346 |
| chr1_4 | exon | 49534575 | 49534803 | 49534575 | ID=Msa0167610-mRNA-1:exon:14583;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49534877 | 49535089 | 49534877 | ID=Msa0167610-mRNA-1:exon:14584;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49535827 | 49536018 | 49535827 | ID=Msa0167610-mRNA-1:exon:14585;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49536289 | 49536474 | 49536289 | ID=Msa0167610-mRNA-1:exon:14586;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49536821 | 49536953 | 49536821 | ID=Msa0167610-mRNA-1:exon:14587;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49537972 | 49538066 | 49537972 | ID=Msa0167610-mRNA-1:exon:14588;Parent=Msa0167610-mRNA-1 |
| chr1_4 | exon | 49538149 | 49538562 | 49538149 | ID=Msa0167610-mRNA-1:exon:14589;Parent=Msa0167610-mRNA-1 |
| chr1_4 | five_prime_UTR | 49534575 | 49534698 | 49534575 | ID=Msa0167610-mRNA-1:five_prime_utr;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49534699 | 49534803 | 49534699 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49534877 | 49535089 | 49534877 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49535827 | 49536018 | 49535827 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49536289 | 49536474 | 49536289 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49536821 | 49536953 | 49536821 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49537972 | 49538066 | 49537972 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | CDS | 49538149 | 49538265 | 49538149 | ID=Msa0167610-mRNA-1:cds;Parent=Msa0167610-mRNA-1 |
| chr1_4 | three_prime_UTR | 49538266 | 49538562 | 49538266 | ID=Msa0167610-mRNA-1:three_prime_utr;Parent=Msa0167610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
