AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123240 MtrunA17_Chr1g0183691 99.283 279 2 0 1 279 1 279 0.0 567
Msa0123240 MtrunA17_Chr2g0325501 43.017 179 92 3 5 180 18 189 1.76e-41 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123240 AT1G03900.1 70.545 275 62 6 10 279 12 272 1.01e-118 341
Msa0123240 AT3G58600.1 43.575 179 85 4 5 177 27 195 7.67e-40 140

Find 117 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTCTCTGATTTATTT+TGG 0.077754 1_3:+50249878 Msa0123240:three_prime_UTR
TGGGGAGAAATTAACTTTAT+AGG 0.242841 1_3:-50250056 None:intergenic
CAAGGGAAGCATGCGTTTAT+TGG 0.243287 1_3:+50248276 Msa0123240:CDS
GCTGGCATGCTTTCAGCTGC+TGG 0.245848 1_3:+50249082 Msa0123240:CDS
ATCGGATCTTTCTCAATTAC+AGG 0.250114 1_3:+50249297 Msa0123240:CDS
GAATTTGAGAAACGCGTTAT+TGG 0.257049 1_3:-50247901 None:intergenic
GGTCCTGTATCTAGTGTTAA+AGG 0.284346 1_3:+50249238 Msa0123240:CDS
GGAGCAAGGTTCAATACTTT+TGG 0.310945 1_3:-50249136 None:intergenic
TTCTTCTAACGACATCGTTT+TGG 0.328092 1_3:-50247959 None:intergenic
TTGGGAGAGATCAAGGGATT+GGG 0.335083 1_3:-50250075 None:intergenic
AAGCATGCGTTTATTGGATT+GGG 0.336786 1_3:+50248282 Msa0123240:CDS
CACAAGGCGGCTGGTGGAGC+TGG 0.355323 1_3:+50249064 Msa0123240:CDS
GAGTTTGAGTTTAATGTGAA+TGG 0.359078 1_3:-50247928 None:intergenic
GCCGTGACCGGTGCGAGATC+CGG 0.369388 1_3:+50248130 Msa0123240:CDS
GCGAAGAGATCACCGGAGTT+AGG 0.375730 1_3:-50248162 None:intergenic
GCTTTCAGCTGCTGGCCTAT+CGG 0.386640 1_3:+50249090 Msa0123240:CDS
CTTTCAGCTGCTGGCCTATC+GGG 0.396419 1_3:+50249091 Msa0123240:CDS
TCCCGGTCAGCGTGAGGGTT+CGG 0.398042 1_3:+50248200 Msa0123240:CDS
CGAGCAGCAACCGGATCATT+TGG 0.402087 1_3:-50249202 None:intergenic
TTCATCCTGCTGTTAATCAT+AGG 0.414816 1_3:+50248430 Msa0123240:CDS
TGCTGTTAATCATAGGCTTA+AGG 0.419472 1_3:+50248437 Msa0123240:CDS
AACCGAACCCTCACGCTGAC+CGG 0.428541 1_3:-50248202 None:intergenic
CTTCCCTCATCAGCCACTCC+TGG 0.429001 1_3:+50249732 Msa0123240:CDS
GTCCCTTTAACACTAGATAC+AGG 0.431990 1_3:-50249241 None:intergenic
GAAGCATGCGTTTATTGGAT+TGG 0.436801 1_3:+50248281 Msa0123240:CDS
GCGTGAGGGTTCGGTTGAAC+CGG 0.442496 1_3:+50248209 Msa0123240:CDS
TGTGAGAAGAGAACATGATA+AGG 0.442504 1_3:+50248365 Msa0123240:CDS
TTTGAGAAAAGAAATATTGA+AGG 0.443231 1_3:+50249912 Msa0123240:three_prime_UTR
GGCTCCAATCAGACAAGATC+TGG 0.444379 1_3:+50248082 Msa0123240:CDS
CTTGGATCGACAGCTGCGTC+AGG 0.445581 1_3:+50249806 Msa0123240:three_prime_UTR
ATAAAGATTGGGAGAGATCA+AGG 0.446692 1_3:-50250082 None:intergenic
ATCCCGCCGCGAACAACCTC+CGG 0.448428 1_3:+50248039 Msa0123240:CDS
TTTGTTCTGAAGATTGAAGA+TGG 0.449673 1_3:+50248252 Msa0123240:CDS
ACGCCACAGTCAATAAAGAT+TGG 0.451335 1_3:-50250094 None:intergenic
CCTGGATCAACACCTGCATC+AGG 0.454323 1_3:+50249750 Msa0123240:CDS
TGGGAGAGATCAAGGGATTG+GGG 0.455280 1_3:-50250074 None:intergenic
ATTATATATACAGCCACTCT+TGG 0.456768 1_3:+50249788 Msa0123240:exon
ATTGGGAGAGATCAAGGGAT+TGG 0.457400 1_3:-50250076 None:intergenic
CGCCGGAGGTTGTTCGCGGC+GGG 0.458516 1_3:-50248041 None:intergenic
AGAGAACATGATAAGGAGTC+TGG 0.464167 1_3:+50248372 Msa0123240:CDS
AAGATAGTAGCAGAGCATAT+TGG 0.466472 1_3:+50247787 None:intergenic
CCTGATGCAGGTGTTGATCC+AGG 0.466664 1_3:-50249750 None:intergenic
GAAGCAATCCGAGCAGCAAC+CGG 0.468103 1_3:-50249211 None:intergenic
CGCCACAGTCAATAAAGATT+GGG 0.470327 1_3:-50250093 None:intergenic
ACCGGATCATTTGGTGGGAG+TGG 0.474405 1_3:-50249193 None:intergenic
GTGCTTGACATTAATCCTGA+TGG 0.479670 1_3:-50249044 None:intergenic
TCCACTCCCACCAAATGATC+CGG 0.488066 1_3:+50249192 Msa0123240:CDS
CGGAGTTAGGATCTTCTAAC+CGG 0.488892 1_3:-50248149 None:intergenic
TAACCGCCGGAGGTTGTTCG+CGG 0.489732 1_3:-50248045 None:intergenic
GCGTCGTATCTCGCCGTGAC+CGG 0.490086 1_3:+50248118 Msa0123240:CDS
TATCTCGACGAATCGAGAAC+CGG 0.491919 1_3:-50248228 None:intergenic
GTCCTGTATCTAGTGTTAAA+GGG 0.497916 1_3:+50249239 Msa0123240:CDS
CGGACCAGATCTTGTCTGAT+TGG 0.500982 1_3:-50248086 None:intergenic
ATCGACAGCTGCGTCAGGAT+TGG 0.502193 1_3:+50249811 Msa0123240:three_prime_UTR
GTTTATTGGATTGGGGTTTG+CGG 0.504982 1_3:+50248290 Msa0123240:CDS
ATACGAGTATCTTAACTAAG+AGG 0.506250 1_3:+50249851 Msa0123240:three_prime_UTR
CAATCAGACAAGATCTGGTC+CGG 0.507755 1_3:+50248087 Msa0123240:CDS
AGTGTTAAAGGGACAAAAGA+AGG 0.515401 1_3:+50249250 Msa0123240:CDS
ACCGGATCTCGCACCGGTCA+CGG 0.515952 1_3:-50248131 None:intergenic
AGATACGACGCGGAGACGGC+CGG 0.516487 1_3:-50248106 None:intergenic
AAGGCTGCCCATCCTGATGC+AGG 0.520170 1_3:-50249762 None:intergenic
GTCGTTAGAAGAAGAAGAAG+AGG 0.522046 1_3:+50247969 Msa0123240:CDS
TGATTGCTCGAGGAATGTCC+TGG 0.523604 1_3:+50249988 Msa0123240:three_prime_UTR
AATGTCAAGCACAAGGCGGC+TGG 0.531510 1_3:+50249055 Msa0123240:CDS
ACCGAACCCTCACGCTGACC+GGG 0.532951 1_3:-50248201 None:intergenic
TTGAAGGAAGCTGAAGAAAG+AGG 0.533212 1_3:+50249928 Msa0123240:three_prime_UTR
TGTAGGAGGGAGAAACCATC+AGG 0.535611 1_3:+50249029 Msa0123240:intron
TCTCCTAAAACAGTTGACCT+TGG 0.544438 1_3:+50247833 Msa0123240:five_prime_UTR
GTCAAGCACAAGGCGGCTGG+TGG 0.546548 1_3:+50249058 Msa0123240:CDS
CAAATGATCCGGTTGCTGCT+CGG 0.548131 1_3:+50249203 Msa0123240:CDS
CTGAAGATTGAAGATGGACA+AGG 0.551166 1_3:+50248258 Msa0123240:CDS
GCTGCTCGGATTGCTTCTAC+CGG 0.551616 1_3:+50249217 Msa0123240:CDS
AGCATGCGTTTATTGGATTG+GGG 0.552301 1_3:+50248283 Msa0123240:CDS
TTCGCCGCATTTGTAACCGC+CGG 0.553188 1_3:-50248058 None:intergenic
ACAGTCTACTGATTCTCTAT+CGG 0.561613 1_3:+50249279 Msa0123240:CDS
GTCATAAGTATAGTTAGCGC+AGG 0.564945 1_3:+50249952 Msa0123240:three_prime_UTR
CTCCCAATCTTTATTGACTG+TGG 0.565157 1_3:+50250091 Msa0123240:three_prime_UTR
GATCAACACCTGCATCAGGA+TGG 0.567922 1_3:+50249754 Msa0123240:CDS
TTGAGTAATTTGATTGCTCG+AGG 0.568756 1_3:+50249978 Msa0123240:three_prime_UTR
CGCAGCTGTCGATCCAAGAG+TGG 0.568796 1_3:-50249801 None:intergenic
TTGGATTGGGGTTTGCGGAG+AGG 0.569343 1_3:+50248295 Msa0123240:CDS
ATCAACACCTGCATCAGGAT+GGG 0.573253 1_3:+50249755 Msa0123240:CDS
CTTCTAACCGGATCTCGCAC+CGG 0.574822 1_3:-50248137 None:intergenic
CCGCCGGAGGTTGTTCGCGG+CGG 0.582317 1_3:-50248042 None:intergenic
GGCGAGATACGACGCGGAGA+CGG 0.582763 1_3:-50248110 None:intergenic
GCAGCAACCGGATCATTTGG+TGG 0.583616 1_3:-50249199 None:intergenic
GCGGTTACAAATGCGGCGAA+TGG 0.584085 1_3:+50248061 Msa0123240:CDS
TTGCTACATGCACACCCGAT+AGG 0.586697 1_3:-50249105 None:intergenic
TCGCGGCGGGATCTTGTAGA+CGG 0.592219 1_3:-50248028 None:intergenic
GCCGCATTTGTAACCGCCGG+AGG 0.596884 1_3:-50248055 None:intergenic
TTAAGCCTATGATTAACAGC+AGG 0.600310 1_3:-50248435 None:intergenic
TGGCTGTATATATAATCAGA+AGG 0.603345 1_3:-50249781 None:intergenic
ACCTCCGGCGGTTACAAATG+CGG 0.604789 1_3:+50248054 Msa0123240:CDS
TACTCGTATATATAATCAGA+AGG 0.605799 1_3:-50249837 None:intergenic
TGATCCAGGAGTGGCTGATG+AGG 0.607039 1_3:-50249736 None:intergenic
GTCTGGTGATGCTGATGCCG+CGG 0.607238 1_3:+50248389 Msa0123240:CDS
CGCGAACGACGAGGAGTGTG+TGG 0.610612 1_3:-50247999 None:intergenic
CAGCAACCGGATCATTTGGT+GGG 0.614621 1_3:-50249198 None:intergenic
CAGGATTAATGTCAAGCACA+AGG 0.616170 1_3:+50249048 Msa0123240:CDS
AAACATGTTATTACAAACCA+AGG 0.618335 1_3:-50250027 None:intergenic
GTTGTCTTTGTGTTTGCGAG+AGG 0.620833 1_3:+50247857 Msa0123240:five_prime_UTR
TAAAGATTGGGAGAGATCAA+GGG 0.622275 1_3:-50250081 None:intergenic
TGAGAAACGCGTTATTGGTG+TGG 0.623056 1_3:-50247896 None:intergenic
CGGTTAGAAGATCCTAACTC+CGG 0.634275 1_3:+50248150 Msa0123240:CDS
ACACGCAGCGAAGAGATCAC+CGG 0.637569 1_3:-50248169 None:intergenic
TTTAACACTAGATACAGGAC+CGG 0.645020 1_3:-50249236 None:intergenic
CGGCGACTTCGCGAACGACG+AGG 0.648082 1_3:-50248008 None:intergenic
ATTTGGTGGGAGTGGAAGAG+CGG 0.652140 1_3:-50249185 None:intergenic
TGCAGGTGTTGATCCAGGAG+TGG 0.652617 1_3:-50249745 None:intergenic
TGAAGATTGAAGATGGACAA+GGG 0.659170 1_3:+50248259 Msa0123240:CDS
GATCCAGGAGTGGCTGATGA+GGG 0.665742 1_3:-50249735 None:intergenic
TGGTGATGCTGATGCCGCGG+AGG 0.679687 1_3:+50248392 Msa0123240:CDS
CCGCCGCGAACAACCTCCGG+CGG 0.687466 1_3:+50248042 Msa0123240:CDS
ATCGATCTGTGAATCCTCCG+CGG 0.729159 1_3:-50248406 None:intergenic
GATTAATGTCAAGCACAAGG+CGG 0.745005 1_3:+50249051 Msa0123240:CDS
CAAACACAAAGACAACACCA+AGG 0.791676 1_3:-50247850 None:intergenic
GGTCACGGCGAGATACGACG+CGG 0.826251 1_3:-50248116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATATAATTATGATCA+TGG + chr1_3:50248694-50248713 Msa0123240:intron 15.0%
!!! TATTATTCTCTGATTTATTT+TGG + chr1_3:50249878-50249897 Msa0123240:three_prime_UTR 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG + chr1_3:50249879-50249898 Msa0123240:three_prime_UTR 15.0%
!! TTATGATATAATTATGATCA+TGG + chr1_3:50248694-50248713 Msa0123240:intron 15.0%
!!! TATTATTCTCTGATTTATTT+TGG + chr1_3:50249878-50249897 Msa0123240:three_prime_UTR 15.0%
!!! ATTATTCTCTGATTTATTTT+GGG + chr1_3:50249879-50249898 Msa0123240:three_prime_UTR 15.0%
!!! TGAACTTTAATTTTTTGTAG+CGG + chr1_3:50248513-50248532 Msa0123240:intron 20.0%
!!! ATTAGTTTTTTGTGTGTTTT+TGG + chr1_3:50248609-50248628 Msa0123240:intron 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG - chr1_3:50248934-50248953 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG - chr1_3:50248935-50248954 None:intergenic 20.0%
!! AAAACAAATGAATTGGAAAT+AGG - chr1_3:50249356-50249375 None:intergenic 20.0%
!! TATATGCATAAACAAAGAAA+TGG - chr1_3:50249555-50249574 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG - chr1_3:50249646-50249665 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG + chr1_3:50249880-50249899 Msa0123240:three_prime_UTR 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG + chr1_3:50249912-50249931 Msa0123240:three_prime_UTR 20.0%
!!! TGAACTTTAATTTTTTGTAG+CGG + chr1_3:50248513-50248532 Msa0123240:intron 20.0%
!!! ATTAGTTTTTTGTGTGTTTT+TGG + chr1_3:50248609-50248628 Msa0123240:intron 20.0%
!!! GTAAACATGGTTTTAAAAAA+GGG - chr1_3:50248934-50248953 None:intergenic 20.0%
!!! TGTAAACATGGTTTTAAAAA+AGG - chr1_3:50248935-50248954 None:intergenic 20.0%
!! AAAACAAATGAATTGGAAAT+AGG - chr1_3:50249356-50249375 None:intergenic 20.0%
!! TATATGCATAAACAAAGAAA+TGG - chr1_3:50249555-50249574 None:intergenic 20.0%
!! ACAATATAGAGAAATTAAAC+TGG - chr1_3:50249646-50249665 None:intergenic 20.0%
!!! TTATTCTCTGATTTATTTTG+GGG + chr1_3:50249880-50249899 Msa0123240:three_prime_UTR 20.0%
!! TTTGAGAAAAGAAATATTGA+AGG + chr1_3:50249912-50249931 Msa0123240:three_prime_UTR 20.0%
!!! TTCTCCAATGTTTTAAATCA+TGG + chr1_3:50248783-50248802 Msa0123240:intron 25.0%
!! ACAACCATGATTTAAAACAT+TGG - chr1_3:50248790-50248809 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG + chr1_3:50248789-50248808 Msa0123240:intron 25.0%
! AAAACCATGTTTACAAATCA+CGG + chr1_3:50248940-50248959 Msa0123240:intron 25.0%
! AAATGAATTGGAAATAGGAA+AGG - chr1_3:50249351-50249370 None:intergenic 25.0%
! GATTGCAAAAACAAATGAAT+TGG - chr1_3:50249363-50249382 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG + chr1_3:50249591-50249610 Msa0123240:intron 25.0%
! TACTCGTATATATAATCAGA+AGG - chr1_3:50249840-50249859 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG + chr1_3:50249881-50249900 Msa0123240:three_prime_UTR 25.0%
!! GAAATATTGATGTTTTTCCT+TGG + chr1_3:50250010-50250029 Msa0123240:three_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG - chr1_3:50250030-50250049 None:intergenic 25.0%
!!! TTCTCCAATGTTTTAAATCA+TGG + chr1_3:50248783-50248802 Msa0123240:intron 25.0%
!! ACAACCATGATTTAAAACAT+TGG - chr1_3:50248790-50248809 None:intergenic 25.0%
!!! AATGTTTTAAATCATGGTTG+TGG + chr1_3:50248789-50248808 Msa0123240:intron 25.0%
! AAAACCATGTTTACAAATCA+CGG + chr1_3:50248940-50248959 Msa0123240:intron 25.0%
! AAATGAATTGGAAATAGGAA+AGG - chr1_3:50249351-50249370 None:intergenic 25.0%
! GATTGCAAAAACAAATGAAT+TGG - chr1_3:50249363-50249382 None:intergenic 25.0%
! TTGTAAAACAACAGTTACAT+TGG + chr1_3:50249591-50249610 Msa0123240:intron 25.0%
! TACTCGTATATATAATCAGA+AGG - chr1_3:50249840-50249859 None:intergenic 25.0%
!!! TATTCTCTGATTTATTTTGG+GGG + chr1_3:50249881-50249900 Msa0123240:three_prime_UTR 25.0%
!! GAAATATTGATGTTTTTCCT+TGG + chr1_3:50250010-50250029 Msa0123240:three_prime_UTR 25.0%
! AAACATGTTATTACAAACCA+AGG - chr1_3:50250030-50250049 None:intergenic 25.0%
! GAGTTTGAGTTTAATGTGAA+TGG - chr1_3:50247931-50247950 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG + chr1_3:50248252-50248271 Msa0123240:CDS 30.0%
!! TGATCACACAAATTTGCTAA+TGG - chr1_3:50248469-50248488 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG + chr1_3:50248628-50248647 Msa0123240:intron 30.0%
ATTTGGGCAAAAAATAACCT+CGG - chr1_3:50248728-50248747 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG - chr1_3:50248751-50248770 None:intergenic 30.0%
AATCGACAAATACATAAGCA+AGG - chr1_3:50249005-50249024 None:intergenic 30.0%
TTGCTTATGTATTTGTCGAT+TGG + chr1_3:50249004-50249023 Msa0123240:intron 30.0%
AGAACTTGCAAATTATTGCA+TGG + chr1_3:50249392-50249411 Msa0123240:intron 30.0%
CATAATCTTAGATAGGTACA+CGG - chr1_3:50249485-50249504 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG - chr1_3:50249492-50249511 None:intergenic 30.0%
ATTCATAGTAAACAGTGTCT+AGG - chr1_3:50249675-50249694 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG - chr1_3:50249784-50249803 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG + chr1_3:50249788-50249807 Msa0123240:exon 30.0%
ATACGAGTATCTTAACTAAG+AGG + chr1_3:50249851-50249870 Msa0123240:three_prime_UTR 30.0%
GGAAAAACATCAATATTTCC+AGG - chr1_3:50250009-50250028 None:intergenic 30.0%
TGGGGAGAAATTAACTTTAT+AGG - chr1_3:50250059-50250078 None:intergenic 30.0%
! GAGTTTGAGTTTAATGTGAA+TGG - chr1_3:50247931-50247950 None:intergenic 30.0%
!! TTTGTTCTGAAGATTGAAGA+TGG + chr1_3:50248252-50248271 Msa0123240:CDS 30.0%
!! TGATCACACAAATTTGCTAA+TGG - chr1_3:50248469-50248488 None:intergenic 30.0%
TTGGTTAGTGTTAATTGTTG+TGG + chr1_3:50248628-50248647 Msa0123240:intron 30.0%
ATTTGGGCAAAAAATAACCT+CGG - chr1_3:50248728-50248747 None:intergenic 30.0%
CTAGAAACTACTCTAAACAT+CGG - chr1_3:50248751-50248770 None:intergenic 30.0%
AATCGACAAATACATAAGCA+AGG - chr1_3:50249005-50249024 None:intergenic 30.0%
TTGCTTATGTATTTGTCGAT+TGG + chr1_3:50249004-50249023 Msa0123240:intron 30.0%
AGAACTTGCAAATTATTGCA+TGG + chr1_3:50249392-50249411 Msa0123240:intron 30.0%
CATAATCTTAGATAGGTACA+CGG - chr1_3:50249485-50249504 None:intergenic 30.0%
AGCATAGCATAATCTTAGAT+AGG - chr1_3:50249492-50249511 None:intergenic 30.0%
ATTCATAGTAAACAGTGTCT+AGG - chr1_3:50249675-50249694 None:intergenic 30.0%
TGGCTGTATATATAATCAGA+AGG - chr1_3:50249784-50249803 None:intergenic 30.0%
ATTATATATACAGCCACTCT+TGG + chr1_3:50249788-50249807 Msa0123240:exon 30.0%
ATACGAGTATCTTAACTAAG+AGG + chr1_3:50249851-50249870 Msa0123240:three_prime_UTR 30.0%
GGAAAAACATCAATATTTCC+AGG - chr1_3:50250009-50250028 None:intergenic 30.0%
TGGGGAGAAATTAACTTTAT+AGG - chr1_3:50250059-50250078 None:intergenic 30.0%
GAATTTGAGAAACGCGTTAT+TGG - chr1_3:50247904-50247923 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG - chr1_3:50247962-50247981 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG + chr1_3:50247970-50247989 Msa0123240:CDS 35.0%
TGAAGATTGAAGATGGACAA+GGG + chr1_3:50248259-50248278 Msa0123240:CDS 35.0%
AAGCATGCGTTTATTGGATT+GGG + chr1_3:50248282-50248301 Msa0123240:CDS 35.0%
TGTGAGAAGAGAACATGATA+AGG + chr1_3:50248365-50248384 Msa0123240:CDS 35.0%
TTCATCCTGCTGTTAATCAT+AGG + chr1_3:50248430-50248449 Msa0123240:CDS 35.0%
TTAAGCCTATGATTAACAGC+AGG - chr1_3:50248438-50248457 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG + chr1_3:50248437-50248456 Msa0123240:CDS 35.0%
CTACTCTAAACATCGGATTT+GGG - chr1_3:50248744-50248763 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG - chr1_3:50248745-50248764 None:intergenic 35.0%
AGTCACTATTGAGATTGCAT+TGG - chr1_3:50248861-50248880 None:intergenic 35.0%
TAAAAAAGGGTTTGCGATCT+GGG - chr1_3:50248921-50248940 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG - chr1_3:50248922-50248941 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG - chr1_3:50248947-50248966 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG - chr1_3:50249133-50249152 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG - chr1_3:50249239-50249258 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG + chr1_3:50249239-50249258 Msa0123240:CDS 35.0%
AGTGTTAAAGGGACAAAAGA+AGG + chr1_3:50249250-50249269 Msa0123240:CDS 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG + chr1_3:50249279-50249298 Msa0123240:CDS 35.0%
ATCGGATCTTTCTCAATTAC+AGG + chr1_3:50249297-50249316 Msa0123240:CDS 35.0%
TTTCTCAATTACAGGTATGC+TGG + chr1_3:50249305-50249324 Msa0123240:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG + chr1_3:50249397-50249416 Msa0123240:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG + chr1_3:50249978-50249997 Msa0123240:three_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG - chr1_3:50250084-50250103 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG - chr1_3:50250085-50250104 None:intergenic 35.0%
GAATTTGAGAAACGCGTTAT+TGG - chr1_3:50247904-50247923 None:intergenic 35.0%
! TTCTTCTAACGACATCGTTT+TGG - chr1_3:50247962-50247981 None:intergenic 35.0%
TCGTTAGAAGAAGAAGAAGA+GGG + chr1_3:50247970-50247989 Msa0123240:CDS 35.0%
TGAAGATTGAAGATGGACAA+GGG + chr1_3:50248259-50248278 Msa0123240:CDS 35.0%
AAGCATGCGTTTATTGGATT+GGG + chr1_3:50248282-50248301 Msa0123240:CDS 35.0%
TGTGAGAAGAGAACATGATA+AGG + chr1_3:50248365-50248384 Msa0123240:CDS 35.0%
TTCATCCTGCTGTTAATCAT+AGG + chr1_3:50248430-50248449 Msa0123240:CDS 35.0%
TTAAGCCTATGATTAACAGC+AGG - chr1_3:50248438-50248457 None:intergenic 35.0%
TGCTGTTAATCATAGGCTTA+AGG + chr1_3:50248437-50248456 Msa0123240:CDS 35.0%
CTACTCTAAACATCGGATTT+GGG - chr1_3:50248744-50248763 None:intergenic 35.0%
ACTACTCTAAACATCGGATT+TGG - chr1_3:50248745-50248764 None:intergenic 35.0%
AGTCACTATTGAGATTGCAT+TGG - chr1_3:50248861-50248880 None:intergenic 35.0%
TAAAAAAGGGTTTGCGATCT+GGG - chr1_3:50248921-50248940 None:intergenic 35.0%
TTAAAAAAGGGTTTGCGATC+TGG - chr1_3:50248922-50248941 None:intergenic 35.0%
! AAGACCGTGATTTGTAAACA+TGG - chr1_3:50248947-50248966 None:intergenic 35.0%
!!! AGGTTCAATACTTTTGGCTT+CGG - chr1_3:50249133-50249152 None:intergenic 35.0%
TTTAACACTAGATACAGGAC+CGG - chr1_3:50249239-50249258 None:intergenic 35.0%
GTCCTGTATCTAGTGTTAAA+GGG + chr1_3:50249239-50249258 Msa0123240:CDS 35.0%
AGTGTTAAAGGGACAAAAGA+AGG + chr1_3:50249250-50249269 Msa0123240:CDS 35.0%
!! ACAGTCTACTGATTCTCTAT+CGG + chr1_3:50249279-50249298 Msa0123240:CDS 35.0%
ATCGGATCTTTCTCAATTAC+AGG + chr1_3:50249297-50249316 Msa0123240:CDS 35.0%
TTTCTCAATTACAGGTATGC+TGG + chr1_3:50249305-50249324 Msa0123240:intron 35.0%
TTGCAAATTATTGCATGGCT+GGG + chr1_3:50249397-50249416 Msa0123240:intron 35.0%
TTGAGTAATTTGATTGCTCG+AGG + chr1_3:50249978-50249997 Msa0123240:three_prime_UTR 35.0%
TAAAGATTGGGAGAGATCAA+GGG - chr1_3:50250084-50250103 None:intergenic 35.0%
ATAAAGATTGGGAGAGATCA+AGG - chr1_3:50250085-50250104 None:intergenic 35.0%
TCTCCTAAAACAGTTGACCT+TGG + chr1_3:50247833-50247852 Msa0123240:five_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG - chr1_3:50247839-50247858 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG - chr1_3:50247853-50247872 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG + chr1_3:50247969-50247988 Msa0123240:CDS 40.0%
CTGAAGATTGAAGATGGACA+AGG + chr1_3:50248258-50248277 Msa0123240:CDS 40.0%
GAAGCATGCGTTTATTGGAT+TGG + chr1_3:50248281-50248300 Msa0123240:CDS 40.0%
AGCATGCGTTTATTGGATTG+GGG + chr1_3:50248283-50248302 Msa0123240:CDS 40.0%
! GTTTATTGGATTGGGGTTTG+CGG + chr1_3:50248290-50248309 Msa0123240:CDS 40.0%
AGAGAACATGATAAGGAGTC+TGG + chr1_3:50248372-50248391 Msa0123240:CDS 40.0%
! GTTGCTATTGCAAATGATCG+TGG + chr1_3:50248825-50248844 Msa0123240:intron 40.0%
GTGCTTGACATTAATCCTGA+TGG - chr1_3:50249047-50249066 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG + chr1_3:50249048-50249067 Msa0123240:CDS 40.0%
GATTAATGTCAAGCACAAGG+CGG + chr1_3:50249051-50249070 Msa0123240:CDS 40.0%
! GGAGCAAGGTTCAATACTTT+TGG - chr1_3:50249139-50249158 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG + chr1_3:50249238-50249257 Msa0123240:CDS 40.0%
GTCCCTTTAACACTAGATAC+AGG - chr1_3:50249244-50249263 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG - chr1_3:50249342-50249361 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG + chr1_3:50249396-50249415 Msa0123240:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG - chr1_3:50249627-50249646 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG + chr1_3:50249928-50249947 Msa0123240:three_prime_UTR 40.0%
GTCATAAGTATAGTTAGCGC+AGG + chr1_3:50249952-50249971 Msa0123240:three_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG + chr1_3:50250091-50250110 Msa0123240:three_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG - chr1_3:50250096-50250115 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG - chr1_3:50250097-50250116 None:intergenic 40.0%
TCTCCTAAAACAGTTGACCT+TGG + chr1_3:50247833-50247852 Msa0123240:five_prime_UTR 40.0%
! ACACCAAGGTCAACTGTTTT+AGG - chr1_3:50247839-50247858 None:intergenic 40.0%
CAAACACAAAGACAACACCA+AGG - chr1_3:50247853-50247872 None:intergenic 40.0%
GTCGTTAGAAGAAGAAGAAG+AGG + chr1_3:50247969-50247988 Msa0123240:CDS 40.0%
CTGAAGATTGAAGATGGACA+AGG + chr1_3:50248258-50248277 Msa0123240:CDS 40.0%
GAAGCATGCGTTTATTGGAT+TGG + chr1_3:50248281-50248300 Msa0123240:CDS 40.0%
AGCATGCGTTTATTGGATTG+GGG + chr1_3:50248283-50248302 Msa0123240:CDS 40.0%
! GTTTATTGGATTGGGGTTTG+CGG + chr1_3:50248290-50248309 Msa0123240:CDS 40.0%
AGAGAACATGATAAGGAGTC+TGG + chr1_3:50248372-50248391 Msa0123240:CDS 40.0%
! GTTGCTATTGCAAATGATCG+TGG + chr1_3:50248825-50248844 Msa0123240:intron 40.0%
GTGCTTGACATTAATCCTGA+TGG - chr1_3:50249047-50249066 None:intergenic 40.0%
CAGGATTAATGTCAAGCACA+AGG + chr1_3:50249048-50249067 Msa0123240:CDS 40.0%
GATTAATGTCAAGCACAAGG+CGG + chr1_3:50249051-50249070 Msa0123240:CDS 40.0%
! GGAGCAAGGTTCAATACTTT+TGG - chr1_3:50249139-50249158 None:intergenic 40.0%
GGTCCTGTATCTAGTGTTAA+AGG + chr1_3:50249238-50249257 Msa0123240:CDS 40.0%
GTCCCTTTAACACTAGATAC+AGG - chr1_3:50249244-50249263 None:intergenic 40.0%
GGAAATAGGAAAGGCTCTTA+AGG - chr1_3:50249342-50249361 None:intergenic 40.0%
CTTGCAAATTATTGCATGGC+TGG + chr1_3:50249396-50249415 Msa0123240:intron 40.0%
CTGGCAAAGTAACATGATCA+CGG - chr1_3:50249627-50249646 None:intergenic 40.0%
TTGAAGGAAGCTGAAGAAAG+AGG + chr1_3:50249928-50249947 Msa0123240:three_prime_UTR 40.0%
GTCATAAGTATAGTTAGCGC+AGG + chr1_3:50249952-50249971 Msa0123240:three_prime_UTR 40.0%
! CTCCCAATCTTTATTGACTG+TGG + chr1_3:50250091-50250110 Msa0123240:three_prime_UTR 40.0%
CGCCACAGTCAATAAAGATT+GGG - chr1_3:50250096-50250115 None:intergenic 40.0%
ACGCCACAGTCAATAAAGAT+TGG - chr1_3:50250097-50250116 None:intergenic 40.0%
GTTGTCTTTGTGTTTGCGAG+AGG + chr1_3:50247857-50247876 Msa0123240:five_prime_UTR 45.0%
TGAGAAACGCGTTATTGGTG+TGG - chr1_3:50247899-50247918 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG + chr1_3:50248087-50248106 Msa0123240:CDS 45.0%
CGGAGTTAGGATCTTCTAAC+CGG - chr1_3:50248152-50248171 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG + chr1_3:50248150-50248169 Msa0123240:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG + chr1_3:50248183-50248202 Msa0123240:CDS 45.0%
TATCTCGACGAATCGAGAAC+CGG - chr1_3:50248231-50248250 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG + chr1_3:50248276-50248295 Msa0123240:CDS 45.0%
TGATCATGGTGAATTGTCCG+AGG + chr1_3:50248708-50248727 Msa0123240:intron 45.0%
TGCAAATGATCGTGGCCAAA+TGG + chr1_3:50248833-50248852 Msa0123240:intron 45.0%
GCAAATGATCGTGGCCAAAT+GGG + chr1_3:50248834-50248853 Msa0123240:intron 45.0%
CAAATGATCGTGGCCAAATG+GGG + chr1_3:50248835-50248854 Msa0123240:intron 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG + chr1_3:50249012-50249031 Msa0123240:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG - chr1_3:50249332-50249351 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG + chr1_3:50249755-50249774 Msa0123240:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG - chr1_3:50250078-50250097 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG - chr1_3:50250079-50250098 None:intergenic 45.0%
GTTGTCTTTGTGTTTGCGAG+AGG + chr1_3:50247857-50247876 Msa0123240:five_prime_UTR 45.0%
TGAGAAACGCGTTATTGGTG+TGG - chr1_3:50247899-50247918 None:intergenic 45.0%
CAATCAGACAAGATCTGGTC+CGG + chr1_3:50248087-50248106 Msa0123240:CDS 45.0%
CGGAGTTAGGATCTTCTAAC+CGG - chr1_3:50248152-50248171 None:intergenic 45.0%
CGGTTAGAAGATCCTAACTC+CGG + chr1_3:50248150-50248169 Msa0123240:CDS 45.0%
!!! GCTGCGTGTTTTGTTTTTCC+CGG + chr1_3:50248183-50248202 Msa0123240:CDS 45.0%
TATCTCGACGAATCGAGAAC+CGG - chr1_3:50248231-50248250 None:intergenic 45.0%
! CAAGGGAAGCATGCGTTTAT+TGG + chr1_3:50248276-50248295 Msa0123240:CDS 45.0%
TGATCATGGTGAATTGTCCG+AGG + chr1_3:50248708-50248727 Msa0123240:intron 45.0%
TGCAAATGATCGTGGCCAAA+TGG + chr1_3:50248833-50248852 Msa0123240:intron 45.0%
GCAAATGATCGTGGCCAAAT+GGG + chr1_3:50248834-50248853 Msa0123240:intron 45.0%
CAAATGATCGTGGCCAAATG+GGG + chr1_3:50248835-50248854 Msa0123240:intron 45.0%
!! GTATTTGTCGATTGGCCTGT+AGG + chr1_3:50249012-50249031 Msa0123240:intron 45.0%
AAGGCTCTTAAGGAATGAGC+AGG - chr1_3:50249332-50249351 None:intergenic 45.0%
ATCAACACCTGCATCAGGAT+GGG + chr1_3:50249755-50249774 Msa0123240:CDS 45.0%
TTGGGAGAGATCAAGGGATT+GGG - chr1_3:50250078-50250097 None:intergenic 45.0%
ATTGGGAGAGATCAAGGGAT+TGG - chr1_3:50250079-50250098 None:intergenic 45.0%
GGCTCCAATCAGACAAGATC+TGG + chr1_3:50248082-50248101 Msa0123240:CDS 50.0%
CGGACCAGATCTTGTCTGAT+TGG - chr1_3:50248089-50248108 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG - chr1_3:50248409-50248428 None:intergenic 50.0%
! GAGATTGCATTGGCCCCATT+TGG - chr1_3:50248851-50248870 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG - chr1_3:50248907-50248926 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG + chr1_3:50249015-50249034 Msa0123240:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG + chr1_3:50249016-50249035 Msa0123240:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG - chr1_3:50249030-50249049 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG + chr1_3:50249029-50249048 Msa0123240:intron 50.0%
TTGCTACATGCACACCCGAT+AGG - chr1_3:50249108-50249127 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG - chr1_3:50249166-50249185 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG - chr1_3:50249188-50249207 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG + chr1_3:50249192-50249211 Msa0123240:CDS 50.0%
CAGCAACCGGATCATTTGGT+GGG - chr1_3:50249201-50249220 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG + chr1_3:50249203-50249222 Msa0123240:CDS 50.0%
GATCAACACCTGCATCAGGA+TGG + chr1_3:50249754-50249773 Msa0123240:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG + chr1_3:50249988-50250007 Msa0123240:three_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG - chr1_3:50250077-50250096 None:intergenic 50.0%
GGCTCCAATCAGACAAGATC+TGG + chr1_3:50248082-50248101 Msa0123240:CDS 50.0%
CGGACCAGATCTTGTCTGAT+TGG - chr1_3:50248089-50248108 None:intergenic 50.0%
ATCGATCTGTGAATCCTCCG+CGG - chr1_3:50248409-50248428 None:intergenic 50.0%
! GAGATTGCATTGGCCCCATT+TGG - chr1_3:50248851-50248870 None:intergenic 50.0%
CGATCTGGGTTGCAACATCA+AGG - chr1_3:50248907-50248926 None:intergenic 50.0%
!! TTTGTCGATTGGCCTGTAGG+AGG + chr1_3:50249015-50249034 Msa0123240:intron 50.0%
!! TTGTCGATTGGCCTGTAGGA+GGG + chr1_3:50249016-50249035 Msa0123240:intron 50.0%
TGATGGTTTCTCCCTCCTAC+AGG - chr1_3:50249030-50249049 None:intergenic 50.0%
TGTAGGAGGGAGAAACCATC+AGG + chr1_3:50249029-50249048 Msa0123240:intron 50.0%
TTGCTACATGCACACCCGAT+AGG - chr1_3:50249108-50249127 None:intergenic 50.0%
! GATCTGATTTTCCCTGCACC+CGG - chr1_3:50249166-50249185 None:intergenic 50.0%
! ATTTGGTGGGAGTGGAAGAG+CGG - chr1_3:50249188-50249207 None:intergenic 50.0%
TCCACTCCCACCAAATGATC+CGG + chr1_3:50249192-50249211 Msa0123240:CDS 50.0%
CAGCAACCGGATCATTTGGT+GGG - chr1_3:50249201-50249220 None:intergenic 50.0%
CAAATGATCCGGTTGCTGCT+CGG + chr1_3:50249203-50249222 Msa0123240:CDS 50.0%
GATCAACACCTGCATCAGGA+TGG + chr1_3:50249754-50249773 Msa0123240:CDS 50.0%
TGATTGCTCGAGGAATGTCC+TGG + chr1_3:50249988-50250007 Msa0123240:three_prime_UTR 50.0%
TGGGAGAGATCAAGGGATTG+GGG - chr1_3:50250077-50250096 None:intergenic 50.0%
ACCTCCGGCGGTTACAAATG+CGG + chr1_3:50248054-50248073 Msa0123240:CDS 55.0%
TTCGCCGCATTTGTAACCGC+CGG - chr1_3:50248061-50248080 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG + chr1_3:50248061-50248080 Msa0123240:CDS 55.0%
CTTCTAACCGGATCTCGCAC+CGG - chr1_3:50248140-50248159 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG - chr1_3:50248165-50248184 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG - chr1_3:50248172-50248191 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG + chr1_3:50248194-50248213 Msa0123240:CDS 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG + chr1_3:50248195-50248214 Msa0123240:CDS 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG + chr1_3:50248295-50248314 Msa0123240:CDS 55.0%
AATGTCAAGCACAAGGCGGC+TGG + chr1_3:50249055-50249074 Msa0123240:CDS 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG + chr1_3:50249090-50249109 Msa0123240:CDS 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG + chr1_3:50249091-50249110 Msa0123240:CDS 55.0%
ATTGAACCTTGCTCCCCCAC+CGG + chr1_3:50249144-50249163 Msa0123240:CDS 55.0%
! TGATTTTCCCTGCACCCGGT+GGG - chr1_3:50249162-50249181 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG - chr1_3:50249196-50249215 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG - chr1_3:50249202-50249221 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG - chr1_3:50249205-50249224 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG - chr1_3:50249214-50249233 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG + chr1_3:50249217-50249236 Msa0123240:CDS 55.0%
GATCCAGGAGTGGCTGATGA+GGG - chr1_3:50249738-50249757 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG - chr1_3:50249739-50249758 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG - chr1_3:50249748-50249767 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG - chr1_3:50249753-50249772 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG + chr1_3:50249750-50249769 Msa0123240:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG + chr1_3:50249811-50249830 Msa0123240:three_prime_UTR 55.0%
ACCTCCGGCGGTTACAAATG+CGG + chr1_3:50248054-50248073 Msa0123240:CDS 55.0%
TTCGCCGCATTTGTAACCGC+CGG - chr1_3:50248061-50248080 None:intergenic 55.0%
GCGGTTACAAATGCGGCGAA+TGG + chr1_3:50248061-50248080 Msa0123240:CDS 55.0%
CTTCTAACCGGATCTCGCAC+CGG - chr1_3:50248140-50248159 None:intergenic 55.0%
GCGAAGAGATCACCGGAGTT+AGG - chr1_3:50248165-50248184 None:intergenic 55.0%
ACACGCAGCGAAGAGATCAC+CGG - chr1_3:50248172-50248191 None:intergenic 55.0%
! TGTTTTTCCCGGTCAGCGTG+AGG + chr1_3:50248194-50248213 Msa0123240:CDS 55.0%
! GTTTTTCCCGGTCAGCGTGA+GGG + chr1_3:50248195-50248214 Msa0123240:CDS 55.0%
! TTGGATTGGGGTTTGCGGAG+AGG + chr1_3:50248295-50248314 Msa0123240:CDS 55.0%
AATGTCAAGCACAAGGCGGC+TGG + chr1_3:50249055-50249074 Msa0123240:CDS 55.0%
! GCTTTCAGCTGCTGGCCTAT+CGG + chr1_3:50249090-50249109 Msa0123240:CDS 55.0%
! CTTTCAGCTGCTGGCCTATC+GGG + chr1_3:50249091-50249110 Msa0123240:CDS 55.0%
ATTGAACCTTGCTCCCCCAC+CGG + chr1_3:50249144-50249163 Msa0123240:CDS 55.0%
! TGATTTTCCCTGCACCCGGT+GGG - chr1_3:50249162-50249181 None:intergenic 55.0%
! ACCGGATCATTTGGTGGGAG+TGG - chr1_3:50249196-50249215 None:intergenic 55.0%
GCAGCAACCGGATCATTTGG+TGG - chr1_3:50249202-50249221 None:intergenic 55.0%
CGAGCAGCAACCGGATCATT+TGG - chr1_3:50249205-50249224 None:intergenic 55.0%
GAAGCAATCCGAGCAGCAAC+CGG - chr1_3:50249214-50249233 None:intergenic 55.0%
GCTGCTCGGATTGCTTCTAC+CGG + chr1_3:50249217-50249236 Msa0123240:CDS 55.0%
GATCCAGGAGTGGCTGATGA+GGG - chr1_3:50249738-50249757 None:intergenic 55.0%
TGATCCAGGAGTGGCTGATG+AGG - chr1_3:50249739-50249758 None:intergenic 55.0%
!! TGCAGGTGTTGATCCAGGAG+TGG - chr1_3:50249748-50249767 None:intergenic 55.0%
!! CCTGATGCAGGTGTTGATCC+AGG - chr1_3:50249753-50249772 None:intergenic 55.0%
CCTGGATCAACACCTGCATC+AGG + chr1_3:50249750-50249769 Msa0123240:CDS 55.0%
ATCGACAGCTGCGTCAGGAT+TGG + chr1_3:50249811-50249830 Msa0123240:three_prime_UTR 55.0%
TCGCGGCGGGATCTTGTAGA+CGG - chr1_3:50248031-50248050 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG - chr1_3:50248048-50248067 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG - chr1_3:50248205-50248224 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG + chr1_3:50248209-50248228 Msa0123240:CDS 60.0%
! GTCTGGTGATGCTGATGCCG+CGG + chr1_3:50248389-50248408 Msa0123240:CDS 60.0%
GCTGGCATGCTTTCAGCTGC+TGG + chr1_3:50249082-50249101 Msa0123240:CDS 60.0%
TTGAACCTTGCTCCCCCACC+GGG + chr1_3:50249145-50249164 Msa0123240:CDS 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG - chr1_3:50249160-50249179 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG - chr1_3:50249161-50249180 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG - chr1_3:50249163-50249182 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG + chr1_3:50249732-50249751 Msa0123240:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG - chr1_3:50249765-50249784 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG - chr1_3:50249804-50249823 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG + chr1_3:50249806-50249825 Msa0123240:three_prime_UTR 60.0%
TCGCGGCGGGATCTTGTAGA+CGG - chr1_3:50248031-50248050 None:intergenic 60.0%
TAACCGCCGGAGGTTGTTCG+CGG - chr1_3:50248048-50248067 None:intergenic 60.0%
AACCGAACCCTCACGCTGAC+CGG - chr1_3:50248205-50248224 None:intergenic 60.0%
! GCGTGAGGGTTCGGTTGAAC+CGG + chr1_3:50248209-50248228 Msa0123240:CDS 60.0%
! GTCTGGTGATGCTGATGCCG+CGG + chr1_3:50248389-50248408 Msa0123240:CDS 60.0%
GCTGGCATGCTTTCAGCTGC+TGG + chr1_3:50249082-50249101 Msa0123240:CDS 60.0%
TTGAACCTTGCTCCCCCACC+GGG + chr1_3:50249145-50249164 Msa0123240:CDS 60.0%
! ATTTTCCCTGCACCCGGTGG+GGG - chr1_3:50249160-50249179 None:intergenic 60.0%
! GATTTTCCCTGCACCCGGTG+GGG - chr1_3:50249161-50249180 None:intergenic 60.0%
! CTGATTTTCCCTGCACCCGG+TGG - chr1_3:50249163-50249182 None:intergenic 60.0%
CTTCCCTCATCAGCCACTCC+TGG + chr1_3:50249732-50249751 Msa0123240:CDS 60.0%
AAGGCTGCCCATCCTGATGC+AGG - chr1_3:50249765-50249784 None:intergenic 60.0%
CGCAGCTGTCGATCCAAGAG+TGG - chr1_3:50249804-50249823 None:intergenic 60.0%
CTTGGATCGACAGCTGCGTC+AGG + chr1_3:50249806-50249825 Msa0123240:three_prime_UTR 60.0%
! CGCGAACGACGAGGAGTGTG+TGG - chr1_3:50248002-50248021 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG + chr1_3:50248039-50248058 Msa0123240:CDS 65.0%
GCCGCATTTGTAACCGCCGG+AGG - chr1_3:50248058-50248077 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG - chr1_3:50248109-50248128 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG - chr1_3:50248113-50248132 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG - chr1_3:50248119-50248138 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG + chr1_3:50248118-50248137 Msa0123240:CDS 65.0%
! ACCGGATCTCGCACCGGTCA+CGG - chr1_3:50248134-50248153 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG + chr1_3:50248200-50248219 Msa0123240:CDS 65.0%
ACCGAACCCTCACGCTGACC+GGG - chr1_3:50248204-50248223 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG + chr1_3:50248392-50248411 Msa0123240:CDS 65.0%
GTCAAGCACAAGGCGGCTGG+TGG + chr1_3:50249058-50249077 Msa0123240:CDS 65.0%
! CGCGAACGACGAGGAGTGTG+TGG - chr1_3:50248002-50248021 None:intergenic 65.0%
ATCCCGCCGCGAACAACCTC+CGG + chr1_3:50248039-50248058 Msa0123240:CDS 65.0%
GCCGCATTTGTAACCGCCGG+AGG - chr1_3:50248058-50248077 None:intergenic 65.0%
AGATACGACGCGGAGACGGC+CGG - chr1_3:50248109-50248128 None:intergenic 65.0%
GGCGAGATACGACGCGGAGA+CGG - chr1_3:50248113-50248132 None:intergenic 65.0%
GGTCACGGCGAGATACGACG+CGG - chr1_3:50248119-50248138 None:intergenic 65.0%
GCGTCGTATCTCGCCGTGAC+CGG + chr1_3:50248118-50248137 Msa0123240:CDS 65.0%
! ACCGGATCTCGCACCGGTCA+CGG - chr1_3:50248134-50248153 None:intergenic 65.0%
TCCCGGTCAGCGTGAGGGTT+CGG + chr1_3:50248200-50248219 Msa0123240:CDS 65.0%
ACCGAACCCTCACGCTGACC+GGG - chr1_3:50248204-50248223 None:intergenic 65.0%
! TGGTGATGCTGATGCCGCGG+AGG + chr1_3:50248392-50248411 Msa0123240:CDS 65.0%
GTCAAGCACAAGGCGGCTGG+TGG + chr1_3:50249058-50249077 Msa0123240:CDS 65.0%
CGGCGACTTCGCGAACGACG+AGG - chr1_3:50248011-50248030 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG + chr1_3:50248130-50248149 Msa0123240:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG + chr1_3:50249064-50249083 Msa0123240:CDS 70.0%
TTGCTCCCCCACCGGGTGCA+GGG + chr1_3:50249152-50249171 Msa0123240:CDS 70.0%
CGGCGACTTCGCGAACGACG+AGG - chr1_3:50248011-50248030 None:intergenic 70.0%
GCCGTGACCGGTGCGAGATC+CGG + chr1_3:50248130-50248149 Msa0123240:CDS 70.0%
CACAAGGCGGCTGGTGGAGC+TGG + chr1_3:50249064-50249083 Msa0123240:CDS 70.0%
TTGCTCCCCCACCGGGTGCA+GGG + chr1_3:50249152-50249171 Msa0123240:CDS 70.0%
CGCCGGAGGTTGTTCGCGGC+GGG - chr1_3:50248044-50248063 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG - chr1_3:50248045-50248064 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG + chr1_3:50248042-50248061 Msa0123240:CDS 75.0%
CTGCACCCGGTGGGGGAGCA+AGG - chr1_3:50249153-50249172 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG + chr1_3:50249151-50249170 Msa0123240:CDS 75.0%
CGCCGGAGGTTGTTCGCGGC+GGG - chr1_3:50248044-50248063 None:intergenic 75.0%
CCGCCGGAGGTTGTTCGCGG+CGG - chr1_3:50248045-50248064 None:intergenic 75.0%
CCGCCGCGAACAACCTCCGG+CGG + chr1_3:50248042-50248061 Msa0123240:CDS 75.0%
CTGCACCCGGTGGGGGAGCA+AGG - chr1_3:50249153-50249172 None:intergenic 75.0%
CTTGCTCCCCCACCGGGTGC+AGG + chr1_3:50249151-50249170 Msa0123240:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50247791 50250128 50247791 ID=Msa0123240;Name=Msa0123240
chr1_3 mRNA 50247791 50250128 50247791 ID=Msa0123240-mRNA-1;Parent=Msa0123240;Name=Msa0123240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=176|1|1|1|1|1|3|340|279
chr1_3 exon 50247791 50248458 50247791 ID=Msa0123240-mRNA-1:exon:15300;Parent=Msa0123240-mRNA-1
chr1_3 exon 50249034 50249318 50249034 ID=Msa0123240-mRNA-1:exon:15301;Parent=Msa0123240-mRNA-1
chr1_3 exon 50249726 50250128 50249726 ID=Msa0123240-mRNA-1:exon:15302;Parent=Msa0123240-mRNA-1
chr1_3 five_prime_UTR 50247791 50247966 50247791 ID=Msa0123240-mRNA-1:five_prime_utr;Parent=Msa0123240-mRNA-1
chr1_3 CDS 50247967 50248458 50247967 ID=Msa0123240-mRNA-1:cds;Parent=Msa0123240-mRNA-1
chr1_3 CDS 50249034 50249318 50249034 ID=Msa0123240-mRNA-1:cds;Parent=Msa0123240-mRNA-1
chr1_3 CDS 50249726 50249788 50249726 ID=Msa0123240-mRNA-1:cds;Parent=Msa0123240-mRNA-1
chr1_3 three_prime_UTR 50249789 50250128 50249789 ID=Msa0123240-mRNA-1:three_prime_utr;Parent=Msa0123240-mRNA-1
Gene Sequence

>Msa0123240

ATGTCGTTAGAAGAAGAAGAAGAGGGCTTCGACCACACACTCCTCGTCGTTCGCGAAGTCGCCGTCTACAAGATCCCGCCGCGAACAACCTCCGGCGGTTACAAATGCGGCGAATGGCTCCAATCAGACAAGATCTGGTCCGGCCGTCTCCGCGTCGTATCTCGCCGTGACCGGTGCGAGATCCGGTTAGAAGATCCTAACTCCGGTGATCTCTTCGCTGCGTGTTTTGTTTTTCCCGGTCAGCGTGAGGGTTCGGTTGAACCGGTTCTCGATTCGTCGAGATATTTTGTTCTGAAGATTGAAGATGGACAAGGGAAGCATGCGTTTATTGGATTGGGGTTTGCGGAGAGGAATGAAGCTTTTGATTTCAATGTTGCACTTTCTGATCATGAGAAGTATGTGAGAAGAGAACATGATAAGGAGTCTGGTGATGCTGATGCCGCGGAGGATTCACAGATCGATATTCATCCTGCTGTTAATCATAGGCTTAAGGAGGGAGAAACCATCAGGATTAATGTCAAGCACAAGGCGGCTGGTGGAGCTGGCATGCTTTCAGCTGCTGGCCTATCGGGTGTGCATGTAGCAACACCGAAGCCAAAAGTATTGAACCTTGCTCCCCCACCGGGTGCAGGGAAAATCAGATCCGCTCTTCCACTCCCACCAAATGATCCGGTTGCTGCTCGGATTGCTTCTACCGGTCCTGTATCTAGTGTTAAAGGGACAAAAGAAGGTGTGAAACAGTCTACTGATTCTCTATCGGATCTTTCTCAATTACAGAAAAATCTTCCCTCATCAGCCACTCCTGGATCAACACCTGCATCAGGATGGGCAGCCTTCTGA
Protein sequence

>Msa0123240

MSLEEEEEGFDHTLLVVREVAVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSRRDRCEIRLEDPNSGDLFAACFVFPGQREGSVEPVLDSSRYFVLKIEDGQGKHAFIGLGFAERNEAFDFNVALSDHEKYVRREHDKESGDADAAEDSQIDIHPAVNHRLKEGETIRINVKHKAAGGAGMLSAAGLSGVHVATPKPKVLNLAPPPGAGKIRSALPLPPNDPVAARIASTGPVSSVKGTKEGVKQSTDSLSDLSQLQKNLPSSATPGSTPASGWAAF*